Multiple sequence alignment - TraesCS6D01G062000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G062000 chr6D 100.000 3149 0 0 1 3149 28984437 28981289 0.000000e+00 5816.0
1 TraesCS6D01G062000 chr6A 91.733 2008 96 19 813 2759 33552118 33554116 0.000000e+00 2724.0
2 TraesCS6D01G062000 chr6A 90.433 554 26 10 88 614 33551446 33551999 0.000000e+00 704.0
3 TraesCS6D01G062000 chr6A 98.361 122 2 0 657 778 33551997 33552118 6.840000e-52 215.0
4 TraesCS6D01G062000 chr6A 94.017 117 7 0 2940 3056 33554255 33554371 8.970000e-41 178.0
5 TraesCS6D01G062000 chr4A 82.294 1299 189 27 993 2285 718025097 718026360 0.000000e+00 1086.0
6 TraesCS6D01G062000 chr4A 74.434 1060 213 35 986 2033 716992076 716991063 1.360000e-108 403.0
7 TraesCS6D01G062000 chr4A 91.011 89 8 0 1 89 155596248 155596160 1.530000e-23 121.0
8 TraesCS6D01G062000 chr7A 82.474 1261 181 21 890 2142 15678370 15677142 0.000000e+00 1068.0
9 TraesCS6D01G062000 chr7A 100.000 28 0 0 2154 2181 15668709 15668682 6.000000e-03 52.8
10 TraesCS6D01G062000 chr7D 78.826 1261 241 12 890 2148 17265879 17267115 0.000000e+00 826.0
11 TraesCS6D01G062000 chr7D 77.360 1144 237 18 1001 2136 17809071 17810200 0.000000e+00 658.0
12 TraesCS6D01G062000 chr7D 86.893 206 27 0 1772 1977 17833924 17834129 6.790000e-57 231.0
13 TraesCS6D01G062000 chr7D 90.244 82 8 0 2556 2637 387916761 387916842 1.190000e-19 108.0
14 TraesCS6D01G062000 chr5D 93.258 89 4 2 1 88 97825851 97825938 2.550000e-26 130.0
15 TraesCS6D01G062000 chr7B 92.222 90 5 1 1 88 484597303 484597392 3.300000e-25 126.0
16 TraesCS6D01G062000 chr3A 90.909 88 8 0 1 88 328604711 328604798 5.520000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G062000 chr6D 28981289 28984437 3148 True 5816.00 5816 100.000 1 3149 1 chr6D.!!$R1 3148
1 TraesCS6D01G062000 chr6A 33551446 33554371 2925 False 955.25 2724 93.636 88 3056 4 chr6A.!!$F1 2968
2 TraesCS6D01G062000 chr4A 718025097 718026360 1263 False 1086.00 1086 82.294 993 2285 1 chr4A.!!$F1 1292
3 TraesCS6D01G062000 chr4A 716991063 716992076 1013 True 403.00 403 74.434 986 2033 1 chr4A.!!$R2 1047
4 TraesCS6D01G062000 chr7A 15677142 15678370 1228 True 1068.00 1068 82.474 890 2142 1 chr7A.!!$R2 1252
5 TraesCS6D01G062000 chr7D 17265879 17267115 1236 False 826.00 826 78.826 890 2148 1 chr7D.!!$F1 1258
6 TraesCS6D01G062000 chr7D 17809071 17810200 1129 False 658.00 658 77.360 1001 2136 1 chr7D.!!$F2 1135

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.384725 CACAGCCTCGTTTTGAAGCG 60.385 55.0 0.0 0.0 39.13 4.68 F
796 824 0.613260 TGCGTACCCAATCTCTTGCT 59.387 50.0 0.0 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 1788 1.405933 GGGGAAGATGCCAATTGTTGC 60.406 52.381 4.43 2.10 0.0 4.17 R
2615 2714 0.185901 GATTGGGGATTGGCTAGGCA 59.814 55.000 16.16 16.16 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.647771 GGCACCCCGGAGACCTTT 61.648 66.667 0.73 0.00 0.00 3.11
26 27 2.434774 GCACCCCGGAGACCTTTT 59.565 61.111 0.73 0.00 0.00 2.27
27 28 1.228459 GCACCCCGGAGACCTTTTT 60.228 57.895 0.73 0.00 0.00 1.94
51 52 6.706055 TTTGTATCTGTAAACTTGAGCTCG 57.294 37.500 9.64 0.00 0.00 5.03
52 53 4.744570 TGTATCTGTAAACTTGAGCTCGG 58.255 43.478 9.64 7.10 0.00 4.63
53 54 2.743636 TCTGTAAACTTGAGCTCGGG 57.256 50.000 9.64 6.72 0.00 5.14
54 55 1.968493 TCTGTAAACTTGAGCTCGGGT 59.032 47.619 9.64 7.40 0.00 5.28
55 56 2.367567 TCTGTAAACTTGAGCTCGGGTT 59.632 45.455 15.40 15.40 0.00 4.11
56 57 3.575256 TCTGTAAACTTGAGCTCGGGTTA 59.425 43.478 19.58 15.59 0.00 2.85
57 58 4.039488 TCTGTAAACTTGAGCTCGGGTTAA 59.961 41.667 19.58 4.29 0.00 2.01
58 59 4.706035 TGTAAACTTGAGCTCGGGTTAAA 58.294 39.130 19.58 12.03 0.00 1.52
59 60 5.310451 TGTAAACTTGAGCTCGGGTTAAAT 58.690 37.500 19.58 10.41 0.00 1.40
60 61 6.465948 TGTAAACTTGAGCTCGGGTTAAATA 58.534 36.000 19.58 9.65 0.00 1.40
61 62 6.935771 TGTAAACTTGAGCTCGGGTTAAATAA 59.064 34.615 19.58 1.71 0.00 1.40
62 63 6.887626 AAACTTGAGCTCGGGTTAAATAAA 57.112 33.333 19.58 1.07 0.00 1.40
63 64 6.496338 AACTTGAGCTCGGGTTAAATAAAG 57.504 37.500 18.37 10.74 0.00 1.85
64 65 4.395231 ACTTGAGCTCGGGTTAAATAAAGC 59.605 41.667 9.64 0.00 34.72 3.51
65 66 4.216411 TGAGCTCGGGTTAAATAAAGCT 57.784 40.909 9.64 3.99 42.45 3.74
66 67 4.585879 TGAGCTCGGGTTAAATAAAGCTT 58.414 39.130 9.64 0.00 40.01 3.74
67 68 4.634443 TGAGCTCGGGTTAAATAAAGCTTC 59.366 41.667 9.64 0.00 40.01 3.86
68 69 3.621715 AGCTCGGGTTAAATAAAGCTTCG 59.378 43.478 0.00 0.00 36.75 3.79
69 70 3.787805 GCTCGGGTTAAATAAAGCTTCGC 60.788 47.826 0.00 0.00 35.83 4.70
70 71 2.349275 TCGGGTTAAATAAAGCTTCGCG 59.651 45.455 0.00 0.00 35.83 5.87
71 72 2.349275 CGGGTTAAATAAAGCTTCGCGA 59.651 45.455 3.71 3.71 35.83 5.87
72 73 3.543460 CGGGTTAAATAAAGCTTCGCGAG 60.543 47.826 9.59 4.97 35.83 5.03
73 74 3.619929 GGGTTAAATAAAGCTTCGCGAGA 59.380 43.478 9.59 0.00 35.83 4.04
74 75 4.272748 GGGTTAAATAAAGCTTCGCGAGAT 59.727 41.667 9.59 0.00 35.83 2.75
75 76 5.220796 GGGTTAAATAAAGCTTCGCGAGATT 60.221 40.000 9.59 6.06 34.95 2.40
76 77 5.677178 GGTTAAATAAAGCTTCGCGAGATTG 59.323 40.000 9.59 2.43 41.60 2.67
77 78 4.946784 AAATAAAGCTTCGCGAGATTGT 57.053 36.364 9.59 0.00 41.60 2.71
78 79 4.522297 AATAAAGCTTCGCGAGATTGTC 57.478 40.909 9.59 0.00 41.60 3.18
79 80 1.795768 AAAGCTTCGCGAGATTGTCA 58.204 45.000 9.59 0.00 41.60 3.58
80 81 1.795768 AAGCTTCGCGAGATTGTCAA 58.204 45.000 9.59 0.00 41.60 3.18
81 82 1.795768 AGCTTCGCGAGATTGTCAAA 58.204 45.000 9.59 0.00 41.60 2.69
82 83 2.143122 AGCTTCGCGAGATTGTCAAAA 58.857 42.857 9.59 0.00 41.60 2.44
83 84 2.548057 AGCTTCGCGAGATTGTCAAAAA 59.452 40.909 9.59 0.00 41.60 1.94
117 118 1.082756 GTCGCACAGCCTCGTTTTG 60.083 57.895 0.00 0.00 0.00 2.44
122 123 0.384725 CACAGCCTCGTTTTGAAGCG 60.385 55.000 0.00 0.00 39.13 4.68
143 144 1.437573 CGCTGGAGAAGGACGCATA 59.562 57.895 0.00 0.00 0.00 3.14
230 231 2.514803 TGCTAGCTTTCCCCTTGTTTC 58.485 47.619 17.23 0.00 0.00 2.78
233 234 3.057245 GCTAGCTTTCCCCTTGTTTCTTG 60.057 47.826 7.70 0.00 0.00 3.02
234 235 3.312736 AGCTTTCCCCTTGTTTCTTGA 57.687 42.857 0.00 0.00 0.00 3.02
301 307 4.112634 TGTTTCATCGTCCTGATCGATTC 58.887 43.478 0.00 0.00 43.98 2.52
306 312 4.518970 TCATCGTCCTGATCGATTCATACA 59.481 41.667 0.00 0.00 43.98 2.29
412 426 1.133407 AGAAGAGTTCCAGATCGCGTC 59.867 52.381 5.77 2.98 0.00 5.19
423 437 2.279937 GATCGCGTCGCCACTTTGAC 62.280 60.000 12.44 0.00 0.00 3.18
501 524 2.126882 TGAACATACTGCTATGGGCCT 58.873 47.619 4.53 0.00 40.92 5.19
502 525 3.313791 TGAACATACTGCTATGGGCCTA 58.686 45.455 4.53 0.00 40.92 3.93
503 526 3.324846 TGAACATACTGCTATGGGCCTAG 59.675 47.826 4.53 5.37 40.92 3.02
504 527 3.260269 ACATACTGCTATGGGCCTAGA 57.740 47.619 4.53 0.00 40.92 2.43
505 528 2.900546 ACATACTGCTATGGGCCTAGAC 59.099 50.000 4.53 2.03 40.92 2.59
514 540 0.755698 TGGGCCTAGACTGGATCGAC 60.756 60.000 4.53 0.00 0.00 4.20
520 546 3.147629 CCTAGACTGGATCGACGGTAAT 58.852 50.000 0.00 0.00 0.00 1.89
546 572 4.264262 GGGAATCATGGGATCCATTGATCT 60.264 45.833 22.18 15.01 42.23 2.75
547 573 4.948621 GGAATCATGGGATCCATTGATCTC 59.051 45.833 22.18 19.74 46.93 2.75
560 586 8.733092 ATCCATTGATCTCCTATGACTAAGAA 57.267 34.615 0.00 0.00 31.03 2.52
650 678 7.484035 AAAAAGTAGAATCGGTATCATGCTC 57.516 36.000 0.00 0.00 0.00 4.26
651 679 4.792521 AGTAGAATCGGTATCATGCTCC 57.207 45.455 0.00 0.00 0.00 4.70
652 680 2.732412 AGAATCGGTATCATGCTCCG 57.268 50.000 13.90 13.90 44.76 4.63
657 685 2.732412 CGGTATCATGCTCCGAAGAT 57.268 50.000 14.60 0.00 46.05 2.40
658 686 3.850122 CGGTATCATGCTCCGAAGATA 57.150 47.619 14.60 0.00 46.05 1.98
763 791 6.597832 TTACCCCATTTGATTTTCGATGTT 57.402 33.333 0.00 0.00 0.00 2.71
765 793 5.961272 ACCCCATTTGATTTTCGATGTTAC 58.039 37.500 0.00 0.00 0.00 2.50
777 805 2.094026 TCGATGTTACTGTCAGCAGCAT 60.094 45.455 2.27 2.27 46.30 3.79
778 806 2.030091 CGATGTTACTGTCAGCAGCATG 59.970 50.000 7.10 0.00 46.30 4.06
790 818 3.085208 CAGCATGCGTACCCAATCT 57.915 52.632 13.01 0.00 0.00 2.40
791 819 0.940126 CAGCATGCGTACCCAATCTC 59.060 55.000 13.01 0.00 0.00 2.75
792 820 0.833287 AGCATGCGTACCCAATCTCT 59.167 50.000 13.01 0.00 0.00 3.10
793 821 1.210478 AGCATGCGTACCCAATCTCTT 59.790 47.619 13.01 0.00 0.00 2.85
794 822 1.331756 GCATGCGTACCCAATCTCTTG 59.668 52.381 0.00 0.00 0.00 3.02
795 823 1.331756 CATGCGTACCCAATCTCTTGC 59.668 52.381 0.00 0.00 0.00 4.01
796 824 0.613260 TGCGTACCCAATCTCTTGCT 59.387 50.000 0.00 0.00 0.00 3.91
797 825 1.009829 GCGTACCCAATCTCTTGCTG 58.990 55.000 0.00 0.00 0.00 4.41
798 826 1.676014 GCGTACCCAATCTCTTGCTGT 60.676 52.381 0.00 0.00 0.00 4.40
799 827 2.002586 CGTACCCAATCTCTTGCTGTG 58.997 52.381 0.00 0.00 0.00 3.66
800 828 2.612972 CGTACCCAATCTCTTGCTGTGT 60.613 50.000 0.00 0.00 0.00 3.72
801 829 2.664402 ACCCAATCTCTTGCTGTGTT 57.336 45.000 0.00 0.00 0.00 3.32
802 830 3.788227 ACCCAATCTCTTGCTGTGTTA 57.212 42.857 0.00 0.00 0.00 2.41
803 831 4.307032 ACCCAATCTCTTGCTGTGTTAT 57.693 40.909 0.00 0.00 0.00 1.89
804 832 4.666512 ACCCAATCTCTTGCTGTGTTATT 58.333 39.130 0.00 0.00 0.00 1.40
805 833 4.460382 ACCCAATCTCTTGCTGTGTTATTG 59.540 41.667 0.00 0.00 0.00 1.90
806 834 4.460382 CCCAATCTCTTGCTGTGTTATTGT 59.540 41.667 0.00 0.00 0.00 2.71
807 835 5.396484 CCAATCTCTTGCTGTGTTATTGTG 58.604 41.667 0.00 0.00 0.00 3.33
808 836 5.048504 CCAATCTCTTGCTGTGTTATTGTGT 60.049 40.000 0.00 0.00 0.00 3.72
809 837 5.869753 ATCTCTTGCTGTGTTATTGTGTC 57.130 39.130 0.00 0.00 0.00 3.67
810 838 4.702831 TCTCTTGCTGTGTTATTGTGTCA 58.297 39.130 0.00 0.00 0.00 3.58
811 839 4.511454 TCTCTTGCTGTGTTATTGTGTCAC 59.489 41.667 0.00 0.00 0.00 3.67
841 869 7.440856 TGTTTTTCATGTCAGAGCGCATATATA 59.559 33.333 11.47 0.00 0.00 0.86
843 871 9.651913 TTTTTCATGTCAGAGCGCATATATATA 57.348 29.630 11.47 0.00 0.00 0.86
844 872 9.822185 TTTTCATGTCAGAGCGCATATATATAT 57.178 29.630 11.47 0.00 0.00 0.86
999 1029 2.101965 CGTCTCAGGCTCTCAGCG 59.898 66.667 0.00 0.00 43.62 5.18
1054 1084 3.118261 GGATGACCTGCTTCACTCCATTA 60.118 47.826 0.00 0.00 0.00 1.90
1063 1093 3.804873 GCTTCACTCCATTATTCCTCGAC 59.195 47.826 0.00 0.00 0.00 4.20
1094 1124 2.158813 TCCTTGACCTTCTTGCTTTCGT 60.159 45.455 0.00 0.00 0.00 3.85
1149 1179 4.597507 TCCTCCTATCCATCCAAACATACC 59.402 45.833 0.00 0.00 0.00 2.73
1208 1247 2.250924 TGTTCATGAGTGCTCTCCTCA 58.749 47.619 13.00 5.96 42.74 3.86
1223 1262 2.104792 CTCCTCATCCTCGCCCATTTAA 59.895 50.000 0.00 0.00 0.00 1.52
1267 1306 6.153170 ACATTCATGCCATGTCACTGATTTAA 59.847 34.615 4.31 0.00 27.99 1.52
1281 1320 5.768164 CACTGATTTAACCAACCAAGGTACT 59.232 40.000 0.00 0.00 42.25 2.73
1357 1401 6.834451 CCCACAAAGTCCTCTAGATAGTTCTA 59.166 42.308 0.00 0.00 33.17 2.10
1358 1402 7.507616 CCCACAAAGTCCTCTAGATAGTTCTAT 59.492 40.741 0.00 0.00 33.98 1.98
1720 1764 6.819649 ACGGATCCGAATACAGAAAATAACAA 59.180 34.615 39.55 0.00 42.83 2.83
1742 1788 0.379669 GATCCTGGTGAAAGCATGCG 59.620 55.000 13.01 0.00 46.93 4.73
1749 1795 1.421382 GTGAAAGCATGCGCAACAAT 58.579 45.000 17.11 2.34 42.27 2.71
1763 1809 1.135024 CAACAATTGGCATCTTCCCCG 60.135 52.381 10.83 0.00 0.00 5.73
1991 2037 0.850883 TGGGGAGGGAGGAGCAATTT 60.851 55.000 0.00 0.00 0.00 1.82
2280 2357 9.245962 GTTGTAGTATAACCATGTCAGATGTAC 57.754 37.037 0.00 0.00 0.00 2.90
2292 2369 5.368145 TGTCAGATGTACTTGGAATATGGC 58.632 41.667 0.00 0.00 0.00 4.40
2299 2376 3.066291 ACTTGGAATATGGCGTTGTCA 57.934 42.857 0.00 0.00 0.00 3.58
2347 2424 5.527951 TCAGCATGCATGAAAATGTTGTTTT 59.472 32.000 30.64 0.00 36.65 2.43
2348 2425 6.038382 TCAGCATGCATGAAAATGTTGTTTTT 59.962 30.769 30.64 0.00 36.65 1.94
2415 2492 4.135306 TCGAGTAGAGAACAGAACAGTGT 58.865 43.478 0.00 0.00 0.00 3.55
2441 2518 6.653020 TCATTTGCAGTTATGTAGGAGATGT 58.347 36.000 5.72 0.00 0.00 3.06
2453 2530 0.179081 GGAGATGTTCACGGTAGCCC 60.179 60.000 0.00 0.00 0.00 5.19
2477 2554 4.144297 AGCACTGAGGATTTTGCAGTTAA 58.856 39.130 0.00 0.00 40.63 2.01
2483 2560 7.816031 CACTGAGGATTTTGCAGTTAATTCATT 59.184 33.333 0.00 0.00 40.63 2.57
2496 2573 7.201857 GCAGTTAATTCATTCTTGAGGGCTTAT 60.202 37.037 0.00 0.00 32.27 1.73
2533 2632 7.232300 CGCATATAAGAGATGTGTTTATGCTG 58.768 38.462 16.59 10.87 38.69 4.41
2535 2634 7.173907 GCATATAAGAGATGTGTTTATGCTGGT 59.826 37.037 13.96 0.00 38.14 4.00
2548 2647 6.126594 TGTTTATGCTGGTATAAGGGCTTAGT 60.127 38.462 0.00 0.00 0.00 2.24
2563 2662 4.510571 GGCTTAGTGGATTTCTAACCGAA 58.489 43.478 0.00 0.00 0.00 4.30
2566 2665 3.345508 AGTGGATTTCTAACCGAACCC 57.654 47.619 0.00 0.00 0.00 4.11
2575 2674 2.093553 TCTAACCGAACCCCAATAACCG 60.094 50.000 0.00 0.00 0.00 4.44
2577 2676 2.116533 CCGAACCCCAATAACCGGC 61.117 63.158 0.00 0.00 0.00 6.13
2616 2715 4.737353 GGTTTTACTTGTCTAACCGGTG 57.263 45.455 8.52 0.00 31.64 4.94
2624 2723 1.305465 TCTAACCGGTGCCTAGCCA 60.305 57.895 8.52 0.00 0.00 4.75
2635 2734 0.890996 GCCTAGCCAATCCCCAATCG 60.891 60.000 0.00 0.00 0.00 3.34
2636 2735 0.250901 CCTAGCCAATCCCCAATCGG 60.251 60.000 0.00 0.00 0.00 4.18
2637 2736 0.474184 CTAGCCAATCCCCAATCGGT 59.526 55.000 0.00 0.00 0.00 4.69
2655 2762 1.850345 GGTGGTAATGGGGATCCTCAA 59.150 52.381 20.77 0.00 0.00 3.02
2676 2783 2.651361 CGCCACGCCTCCCTATAG 59.349 66.667 0.00 0.00 0.00 1.31
2685 2792 2.557490 CGCCTCCCTATAGTTACTCCAC 59.443 54.545 0.00 0.00 0.00 4.02
2686 2793 2.898612 GCCTCCCTATAGTTACTCCACC 59.101 54.545 0.00 0.00 0.00 4.61
2687 2794 3.155501 CCTCCCTATAGTTACTCCACCG 58.844 54.545 0.00 0.00 0.00 4.94
2688 2795 2.557490 CTCCCTATAGTTACTCCACCGC 59.443 54.545 0.00 0.00 0.00 5.68
2689 2796 2.176364 TCCCTATAGTTACTCCACCGCT 59.824 50.000 0.00 0.00 0.00 5.52
2737 2845 1.076632 TCTCCTCTTCCTCTCCGCC 60.077 63.158 0.00 0.00 0.00 6.13
2753 2861 1.142965 GCCTCCTCCGCTTCTTCTC 59.857 63.158 0.00 0.00 0.00 2.87
2759 2867 1.681486 CTCCGCTTCTTCTCCTCCCC 61.681 65.000 0.00 0.00 0.00 4.81
2762 2870 0.105778 CGCTTCTTCTCCTCCCCATC 59.894 60.000 0.00 0.00 0.00 3.51
2763 2871 0.472044 GCTTCTTCTCCTCCCCATCC 59.528 60.000 0.00 0.00 0.00 3.51
2764 2872 1.135960 CTTCTTCTCCTCCCCATCCC 58.864 60.000 0.00 0.00 0.00 3.85
2765 2873 0.327576 TTCTTCTCCTCCCCATCCCC 60.328 60.000 0.00 0.00 0.00 4.81
2766 2874 2.040884 TTCTCCTCCCCATCCCCG 60.041 66.667 0.00 0.00 0.00 5.73
2797 2905 4.883354 GCCTCCCGCCTCCCAATG 62.883 72.222 0.00 0.00 0.00 2.82
2798 2906 4.195334 CCTCCCGCCTCCCAATGG 62.195 72.222 0.00 0.00 0.00 3.16
2799 2907 3.411517 CTCCCGCCTCCCAATGGT 61.412 66.667 0.00 0.00 0.00 3.55
2800 2908 3.406595 CTCCCGCCTCCCAATGGTC 62.407 68.421 0.00 0.00 0.00 4.02
2801 2909 4.856801 CCCGCCTCCCAATGGTCG 62.857 72.222 0.00 0.00 0.00 4.79
2802 2910 4.856801 CCGCCTCCCAATGGTCGG 62.857 72.222 0.00 1.88 37.69 4.79
2803 2911 3.781307 CGCCTCCCAATGGTCGGA 61.781 66.667 8.09 0.00 0.00 4.55
2804 2912 2.124695 GCCTCCCAATGGTCGGAC 60.125 66.667 8.09 0.00 0.00 4.79
2806 2914 2.590092 CTCCCAATGGTCGGACCC 59.410 66.667 23.81 7.15 37.50 4.46
2807 2915 3.012722 TCCCAATGGTCGGACCCC 61.013 66.667 23.81 0.85 37.50 4.95
2808 2916 3.334891 CCCAATGGTCGGACCCCA 61.335 66.667 23.81 7.27 37.50 4.96
2809 2917 2.689691 CCCAATGGTCGGACCCCAT 61.690 63.158 23.81 9.41 44.62 4.00
2810 2918 1.152963 CCAATGGTCGGACCCCATC 60.153 63.158 23.81 0.00 41.87 3.51
2811 2919 1.523711 CAATGGTCGGACCCCATCG 60.524 63.158 23.81 4.91 41.87 3.84
2812 2920 3.400599 AATGGTCGGACCCCATCGC 62.401 63.158 23.81 0.00 41.87 4.58
2815 2923 3.771160 GTCGGACCCCATCGCTGT 61.771 66.667 0.00 0.00 0.00 4.40
2816 2924 3.458163 TCGGACCCCATCGCTGTC 61.458 66.667 0.00 0.00 0.00 3.51
2817 2925 4.873129 CGGACCCCATCGCTGTCG 62.873 72.222 0.00 0.00 0.00 4.35
2820 2928 4.148825 ACCCCATCGCTGTCGCTC 62.149 66.667 0.00 0.00 35.26 5.03
2822 2930 4.899239 CCCATCGCTGTCGCTCCC 62.899 72.222 0.00 0.00 35.26 4.30
2855 2963 3.443045 CCGCAATGCCACCACTCC 61.443 66.667 0.00 0.00 0.00 3.85
2856 2964 3.443045 CGCAATGCCACCACTCCC 61.443 66.667 0.00 0.00 0.00 4.30
2857 2965 2.283101 GCAATGCCACCACTCCCA 60.283 61.111 0.00 0.00 0.00 4.37
2858 2966 2.639327 GCAATGCCACCACTCCCAC 61.639 63.158 0.00 0.00 0.00 4.61
2859 2967 2.034066 AATGCCACCACTCCCACG 59.966 61.111 0.00 0.00 0.00 4.94
2860 2968 3.567579 AATGCCACCACTCCCACGG 62.568 63.158 0.00 0.00 0.00 4.94
2863 2971 2.032071 CCACCACTCCCACGGTTC 59.968 66.667 0.00 0.00 31.41 3.62
2864 2972 2.357034 CACCACTCCCACGGTTCG 60.357 66.667 0.00 0.00 31.41 3.95
2865 2973 4.309950 ACCACTCCCACGGTTCGC 62.310 66.667 0.00 0.00 28.43 4.70
2867 2975 4.003788 CACTCCCACGGTTCGCCT 62.004 66.667 0.00 0.00 34.30 5.52
2868 2976 3.239253 ACTCCCACGGTTCGCCTT 61.239 61.111 0.00 0.00 34.30 4.35
2869 2977 2.434359 CTCCCACGGTTCGCCTTC 60.434 66.667 0.00 0.00 34.30 3.46
2870 2978 3.234630 CTCCCACGGTTCGCCTTCA 62.235 63.158 0.00 0.00 34.30 3.02
2871 2979 2.281208 CCCACGGTTCGCCTTCAA 60.281 61.111 0.00 0.00 34.30 2.69
2872 2980 2.325082 CCCACGGTTCGCCTTCAAG 61.325 63.158 0.00 0.00 34.30 3.02
2873 2981 2.556287 CACGGTTCGCCTTCAAGC 59.444 61.111 0.00 0.00 34.30 4.01
2874 2982 1.961277 CACGGTTCGCCTTCAAGCT 60.961 57.895 0.00 0.00 34.30 3.74
2876 2984 1.228657 ACGGTTCGCCTTCAAGCTTC 61.229 55.000 0.00 0.00 34.30 3.86
2877 2985 1.497722 GGTTCGCCTTCAAGCTTCG 59.502 57.895 0.00 0.00 0.00 3.79
2878 2986 1.154395 GTTCGCCTTCAAGCTTCGC 60.154 57.895 0.00 0.00 0.00 4.70
2879 2987 1.596752 TTCGCCTTCAAGCTTCGCA 60.597 52.632 0.00 0.00 0.00 5.10
2880 2988 0.955428 TTCGCCTTCAAGCTTCGCAT 60.955 50.000 0.00 0.00 0.00 4.73
2881 2989 1.061570 CGCCTTCAAGCTTCGCATC 59.938 57.895 0.00 0.00 0.00 3.91
2882 2990 1.431036 GCCTTCAAGCTTCGCATCC 59.569 57.895 0.00 0.00 0.00 3.51
2883 2991 1.028868 GCCTTCAAGCTTCGCATCCT 61.029 55.000 0.00 0.00 0.00 3.24
2884 2992 1.012841 CCTTCAAGCTTCGCATCCTC 58.987 55.000 0.00 0.00 0.00 3.71
2885 2993 0.649475 CTTCAAGCTTCGCATCCTCG 59.351 55.000 0.00 0.00 0.00 4.63
2886 2994 0.740868 TTCAAGCTTCGCATCCTCGG 60.741 55.000 0.00 0.00 0.00 4.63
2887 2995 2.176273 CAAGCTTCGCATCCTCGGG 61.176 63.158 0.00 0.00 0.00 5.14
2888 2996 4.537433 AGCTTCGCATCCTCGGGC 62.537 66.667 0.00 0.00 0.00 6.13
2935 3043 4.492160 CGCCTGCTTCGCCGACTA 62.492 66.667 0.00 0.00 0.00 2.59
2936 3044 2.886124 GCCTGCTTCGCCGACTAC 60.886 66.667 0.00 0.00 0.00 2.73
2937 3045 2.202756 CCTGCTTCGCCGACTACC 60.203 66.667 0.00 0.00 0.00 3.18
2938 3046 2.571757 CTGCTTCGCCGACTACCA 59.428 61.111 0.00 0.00 0.00 3.25
2980 3088 1.852157 AGGCATGTTGGGAGTGGGA 60.852 57.895 0.00 0.00 0.00 4.37
2982 3090 1.678970 GCATGTTGGGAGTGGGACC 60.679 63.158 0.00 0.00 0.00 4.46
2999 3107 2.223711 GGACCTTGTGAATTTTGTGCGT 60.224 45.455 0.00 0.00 0.00 5.24
3046 3154 0.658897 GGTTTCGTTTCAGGTTCGCA 59.341 50.000 0.00 0.00 0.00 5.10
3050 3158 0.865111 TCGTTTCAGGTTCGCATGTG 59.135 50.000 0.00 0.00 0.00 3.21
3056 3164 2.143122 TCAGGTTCGCATGTGAAACTC 58.857 47.619 31.69 19.34 42.08 3.01
3057 3165 1.136252 CAGGTTCGCATGTGAAACTCG 60.136 52.381 31.69 23.17 42.08 4.18
3058 3166 1.144969 GGTTCGCATGTGAAACTCGA 58.855 50.000 26.15 7.46 38.04 4.04
3059 3167 1.529438 GGTTCGCATGTGAAACTCGAA 59.471 47.619 26.15 12.87 39.72 3.71
3060 3168 2.159627 GGTTCGCATGTGAAACTCGAAT 59.840 45.455 26.15 0.00 42.09 3.34
3061 3169 3.369756 GGTTCGCATGTGAAACTCGAATA 59.630 43.478 26.15 0.00 42.09 1.75
3062 3170 4.142988 GGTTCGCATGTGAAACTCGAATAA 60.143 41.667 26.15 0.00 42.09 1.40
3063 3171 5.447279 GGTTCGCATGTGAAACTCGAATAAT 60.447 40.000 26.15 0.00 42.09 1.28
3064 3172 5.142635 TCGCATGTGAAACTCGAATAATG 57.857 39.130 6.47 0.00 38.04 1.90
3065 3173 4.629634 TCGCATGTGAAACTCGAATAATGT 59.370 37.500 6.47 0.00 38.04 2.71
3066 3174 5.121611 TCGCATGTGAAACTCGAATAATGTT 59.878 36.000 6.47 0.00 38.04 2.71
3067 3175 6.311690 TCGCATGTGAAACTCGAATAATGTTA 59.688 34.615 6.47 0.00 38.04 2.41
3068 3176 7.011016 TCGCATGTGAAACTCGAATAATGTTAT 59.989 33.333 6.47 0.00 38.04 1.89
3069 3177 7.110628 CGCATGTGAAACTCGAATAATGTTATG 59.889 37.037 0.00 0.00 38.04 1.90
3070 3178 7.910162 GCATGTGAAACTCGAATAATGTTATGT 59.090 33.333 0.00 0.00 38.04 2.29
3071 3179 9.213819 CATGTGAAACTCGAATAATGTTATGTG 57.786 33.333 0.00 0.00 38.04 3.21
3072 3180 7.747888 TGTGAAACTCGAATAATGTTATGTGG 58.252 34.615 0.00 0.00 38.04 4.17
3073 3181 7.604545 TGTGAAACTCGAATAATGTTATGTGGA 59.395 33.333 0.00 0.00 38.04 4.02
3074 3182 8.447833 GTGAAACTCGAATAATGTTATGTGGAA 58.552 33.333 0.00 0.00 0.00 3.53
3075 3183 9.004717 TGAAACTCGAATAATGTTATGTGGAAA 57.995 29.630 0.00 0.00 0.00 3.13
3076 3184 9.490663 GAAACTCGAATAATGTTATGTGGAAAG 57.509 33.333 0.00 0.00 0.00 2.62
3077 3185 8.561738 AACTCGAATAATGTTATGTGGAAAGT 57.438 30.769 0.00 0.00 0.00 2.66
3078 3186 8.197988 ACTCGAATAATGTTATGTGGAAAGTC 57.802 34.615 0.00 0.00 0.00 3.01
3079 3187 8.041323 ACTCGAATAATGTTATGTGGAAAGTCT 58.959 33.333 0.00 0.00 0.00 3.24
3080 3188 9.529325 CTCGAATAATGTTATGTGGAAAGTCTA 57.471 33.333 0.00 0.00 0.00 2.59
3081 3189 9.309516 TCGAATAATGTTATGTGGAAAGTCTAC 57.690 33.333 0.00 0.00 0.00 2.59
3082 3190 8.548721 CGAATAATGTTATGTGGAAAGTCTACC 58.451 37.037 0.00 0.00 0.00 3.18
3083 3191 8.747538 AATAATGTTATGTGGAAAGTCTACCC 57.252 34.615 0.00 0.00 0.00 3.69
3084 3192 5.772393 ATGTTATGTGGAAAGTCTACCCA 57.228 39.130 0.00 0.00 0.00 4.51
3085 3193 5.570205 TGTTATGTGGAAAGTCTACCCAA 57.430 39.130 0.00 0.00 0.00 4.12
3086 3194 5.310451 TGTTATGTGGAAAGTCTACCCAAC 58.690 41.667 0.00 0.00 0.00 3.77
3087 3195 5.163184 TGTTATGTGGAAAGTCTACCCAACA 60.163 40.000 0.00 4.98 32.42 3.33
3088 3196 3.485463 TGTGGAAAGTCTACCCAACAG 57.515 47.619 0.00 0.00 0.00 3.16
3089 3197 2.775384 TGTGGAAAGTCTACCCAACAGT 59.225 45.455 0.00 0.00 0.00 3.55
3090 3198 3.181458 TGTGGAAAGTCTACCCAACAGTC 60.181 47.826 0.00 0.00 0.00 3.51
3091 3199 2.036733 TGGAAAGTCTACCCAACAGTCG 59.963 50.000 0.00 0.00 0.00 4.18
3092 3200 2.298163 GGAAAGTCTACCCAACAGTCGA 59.702 50.000 0.00 0.00 0.00 4.20
3093 3201 3.056035 GGAAAGTCTACCCAACAGTCGAT 60.056 47.826 0.00 0.00 0.00 3.59
3094 3202 3.594603 AAGTCTACCCAACAGTCGATG 57.405 47.619 0.00 0.00 0.00 3.84
3095 3203 1.825474 AGTCTACCCAACAGTCGATGG 59.175 52.381 0.00 0.00 34.88 3.51
3096 3204 1.549170 GTCTACCCAACAGTCGATGGT 59.451 52.381 2.27 0.00 33.25 3.55
3097 3205 2.028385 GTCTACCCAACAGTCGATGGTT 60.028 50.000 2.27 0.84 33.25 3.67
3098 3206 2.028476 TCTACCCAACAGTCGATGGTTG 60.028 50.000 19.43 19.43 43.02 3.77
3099 3207 0.472471 ACCCAACAGTCGATGGTTGT 59.528 50.000 22.51 9.30 42.09 3.32
3100 3208 0.874390 CCCAACAGTCGATGGTTGTG 59.126 55.000 22.51 13.12 42.09 3.33
3101 3209 0.238289 CCAACAGTCGATGGTTGTGC 59.762 55.000 22.51 0.00 42.09 4.57
3102 3210 0.943673 CAACAGTCGATGGTTGTGCA 59.056 50.000 18.58 0.00 39.54 4.57
3103 3211 1.069703 CAACAGTCGATGGTTGTGCAG 60.070 52.381 18.58 0.08 39.54 4.41
3104 3212 0.106708 ACAGTCGATGGTTGTGCAGT 59.893 50.000 0.00 0.00 0.00 4.40
3105 3213 1.229428 CAGTCGATGGTTGTGCAGTT 58.771 50.000 0.00 0.00 0.00 3.16
3106 3214 1.603802 CAGTCGATGGTTGTGCAGTTT 59.396 47.619 0.00 0.00 0.00 2.66
3107 3215 1.873591 AGTCGATGGTTGTGCAGTTTC 59.126 47.619 0.00 0.00 0.00 2.78
3108 3216 1.069227 GTCGATGGTTGTGCAGTTTCC 60.069 52.381 0.00 0.00 0.00 3.13
3109 3217 1.202758 TCGATGGTTGTGCAGTTTCCT 60.203 47.619 0.00 0.00 0.00 3.36
3110 3218 1.197721 CGATGGTTGTGCAGTTTCCTC 59.802 52.381 0.00 0.00 0.00 3.71
3111 3219 1.197721 GATGGTTGTGCAGTTTCCTCG 59.802 52.381 0.00 0.00 0.00 4.63
3112 3220 0.817634 TGGTTGTGCAGTTTCCTCGG 60.818 55.000 0.00 0.00 0.00 4.63
3113 3221 0.818040 GGTTGTGCAGTTTCCTCGGT 60.818 55.000 0.00 0.00 0.00 4.69
3114 3222 1.021968 GTTGTGCAGTTTCCTCGGTT 58.978 50.000 0.00 0.00 0.00 4.44
3115 3223 1.404035 GTTGTGCAGTTTCCTCGGTTT 59.596 47.619 0.00 0.00 0.00 3.27
3116 3224 1.757682 TGTGCAGTTTCCTCGGTTTT 58.242 45.000 0.00 0.00 0.00 2.43
3117 3225 1.403679 TGTGCAGTTTCCTCGGTTTTG 59.596 47.619 0.00 0.00 0.00 2.44
3118 3226 0.383949 TGCAGTTTCCTCGGTTTTGC 59.616 50.000 0.00 0.00 0.00 3.68
3119 3227 0.318699 GCAGTTTCCTCGGTTTTGCC 60.319 55.000 0.00 0.00 0.00 4.52
3138 3246 2.045045 CGGAAGCTGGAATGGGCA 60.045 61.111 0.00 0.00 0.00 5.36
3139 3247 2.117156 CGGAAGCTGGAATGGGCAG 61.117 63.158 0.00 0.00 0.00 4.85
3140 3248 1.000396 GGAAGCTGGAATGGGCAGT 60.000 57.895 0.00 0.00 0.00 4.40
3141 3249 1.318158 GGAAGCTGGAATGGGCAGTG 61.318 60.000 0.00 0.00 0.00 3.66
3142 3250 0.610232 GAAGCTGGAATGGGCAGTGT 60.610 55.000 0.00 0.00 0.00 3.55
3143 3251 0.610232 AAGCTGGAATGGGCAGTGTC 60.610 55.000 0.00 0.00 0.00 3.67
3144 3252 1.303561 GCTGGAATGGGCAGTGTCA 60.304 57.895 0.00 0.00 0.00 3.58
3145 3253 0.682209 GCTGGAATGGGCAGTGTCAT 60.682 55.000 0.00 0.00 0.00 3.06
3146 3254 1.843368 CTGGAATGGGCAGTGTCATT 58.157 50.000 11.73 11.73 36.43 2.57
3147 3255 2.173519 CTGGAATGGGCAGTGTCATTT 58.826 47.619 12.70 0.00 34.18 2.32
3148 3256 2.564062 CTGGAATGGGCAGTGTCATTTT 59.436 45.455 12.70 0.00 34.18 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.653078 CCGGGGTGCCCTAACCAA 61.653 66.667 7.26 0.00 42.67 3.67
1 2 4.660611 TCCGGGGTGCCCTAACCA 62.661 66.667 0.00 0.00 42.67 3.67
2 3 3.793888 CTCCGGGGTGCCCTAACC 61.794 72.222 0.00 0.00 42.67 2.85
3 4 2.686106 TCTCCGGGGTGCCCTAAC 60.686 66.667 0.00 0.00 42.67 2.34
4 5 2.686106 GTCTCCGGGGTGCCCTAA 60.686 66.667 0.00 0.00 42.67 2.69
5 6 4.791069 GGTCTCCGGGGTGCCCTA 62.791 72.222 0.00 0.00 42.67 3.53
8 9 2.708593 AAAAAGGTCTCCGGGGTGCC 62.709 60.000 0.00 5.26 0.00 5.01
9 10 1.228459 AAAAAGGTCTCCGGGGTGC 60.228 57.895 0.00 0.00 0.00 5.01
26 27 7.307751 CCGAGCTCAAGTTTACAGATACAAAAA 60.308 37.037 15.40 0.00 0.00 1.94
27 28 6.147164 CCGAGCTCAAGTTTACAGATACAAAA 59.853 38.462 15.40 0.00 0.00 2.44
28 29 5.637810 CCGAGCTCAAGTTTACAGATACAAA 59.362 40.000 15.40 0.00 0.00 2.83
29 30 5.168569 CCGAGCTCAAGTTTACAGATACAA 58.831 41.667 15.40 0.00 0.00 2.41
30 31 4.381612 CCCGAGCTCAAGTTTACAGATACA 60.382 45.833 15.40 0.00 0.00 2.29
31 32 4.113354 CCCGAGCTCAAGTTTACAGATAC 58.887 47.826 15.40 0.00 0.00 2.24
32 33 3.767673 ACCCGAGCTCAAGTTTACAGATA 59.232 43.478 15.40 0.00 0.00 1.98
33 34 2.567615 ACCCGAGCTCAAGTTTACAGAT 59.432 45.455 15.40 0.00 0.00 2.90
34 35 1.968493 ACCCGAGCTCAAGTTTACAGA 59.032 47.619 15.40 0.00 0.00 3.41
35 36 2.457366 ACCCGAGCTCAAGTTTACAG 57.543 50.000 15.40 0.00 0.00 2.74
36 37 2.922740 AACCCGAGCTCAAGTTTACA 57.077 45.000 15.40 0.00 0.00 2.41
37 38 5.874895 ATTTAACCCGAGCTCAAGTTTAC 57.125 39.130 19.97 0.00 0.00 2.01
38 39 7.361457 GCTTTATTTAACCCGAGCTCAAGTTTA 60.361 37.037 19.97 10.97 0.00 2.01
39 40 6.569801 GCTTTATTTAACCCGAGCTCAAGTTT 60.570 38.462 19.97 6.28 0.00 2.66
40 41 5.106277 GCTTTATTTAACCCGAGCTCAAGTT 60.106 40.000 19.05 19.05 0.00 2.66
41 42 4.395231 GCTTTATTTAACCCGAGCTCAAGT 59.605 41.667 15.40 7.20 0.00 3.16
42 43 4.636206 AGCTTTATTTAACCCGAGCTCAAG 59.364 41.667 15.40 6.48 35.74 3.02
43 44 4.585879 AGCTTTATTTAACCCGAGCTCAA 58.414 39.130 15.40 0.00 35.74 3.02
44 45 4.216411 AGCTTTATTTAACCCGAGCTCA 57.784 40.909 15.40 0.00 35.74 4.26
45 46 4.260253 CGAAGCTTTATTTAACCCGAGCTC 60.260 45.833 2.73 2.73 39.36 4.09
46 47 3.621715 CGAAGCTTTATTTAACCCGAGCT 59.378 43.478 0.00 0.00 41.82 4.09
47 48 3.936661 CGAAGCTTTATTTAACCCGAGC 58.063 45.455 0.00 0.00 0.00 5.03
83 84 1.778027 CGACGGCGGAACAGGTTTTT 61.778 55.000 13.24 0.00 0.00 1.94
84 85 2.248835 CGACGGCGGAACAGGTTTT 61.249 57.895 13.24 0.00 0.00 2.43
85 86 2.663852 CGACGGCGGAACAGGTTT 60.664 61.111 13.24 0.00 0.00 3.27
104 105 1.507141 CCGCTTCAAAACGAGGCTGT 61.507 55.000 0.00 0.00 44.34 4.40
106 107 2.617274 GCCGCTTCAAAACGAGGCT 61.617 57.895 0.00 0.00 44.34 4.58
122 123 4.821589 CGTCCTTCTCCAGCGGCC 62.822 72.222 0.00 0.00 0.00 6.13
128 129 1.134367 CTTCGTATGCGTCCTTCTCCA 59.866 52.381 2.37 0.00 39.49 3.86
170 171 1.280746 GTTGGAGACGACGACGACA 59.719 57.895 15.32 4.61 42.66 4.35
194 195 3.431486 GCTAGCATGCCTTGTAGAGAAGT 60.431 47.826 15.66 0.00 0.00 3.01
266 271 3.911365 CGATGAAACATTACGCAAGCAAA 59.089 39.130 0.00 0.00 45.62 3.68
277 282 4.123497 TCGATCAGGACGATGAAACATT 57.877 40.909 0.00 0.00 33.17 2.71
279 284 3.801114 ATCGATCAGGACGATGAAACA 57.199 42.857 0.00 0.00 46.35 2.83
301 307 4.836125 AACAAAGTTCAGCCAGTGTATG 57.164 40.909 0.00 0.00 0.00 2.39
306 312 6.769512 TCTCTAATAACAAAGTTCAGCCAGT 58.230 36.000 0.00 0.00 0.00 4.00
350 359 4.500603 AGACGGACTGTACTACAAAGTG 57.499 45.455 0.00 0.00 36.36 3.16
412 426 1.003839 TAGCCCTGTCAAAGTGGCG 60.004 57.895 0.00 0.00 43.37 5.69
423 437 8.691797 GGAGTCTAAATATCTAATCTAGCCCTG 58.308 40.741 0.00 0.00 0.00 4.45
501 524 4.202080 CCAAATTACCGTCGATCCAGTCTA 60.202 45.833 0.00 0.00 0.00 2.59
502 525 3.430374 CCAAATTACCGTCGATCCAGTCT 60.430 47.826 0.00 0.00 0.00 3.24
503 526 2.864343 CCAAATTACCGTCGATCCAGTC 59.136 50.000 0.00 0.00 0.00 3.51
504 527 2.419574 CCCAAATTACCGTCGATCCAGT 60.420 50.000 0.00 0.00 0.00 4.00
505 528 2.159014 TCCCAAATTACCGTCGATCCAG 60.159 50.000 0.00 0.00 0.00 3.86
514 540 3.561143 TCCCATGATTCCCAAATTACCG 58.439 45.455 0.00 0.00 0.00 4.02
520 546 3.968649 CAATGGATCCCATGATTCCCAAA 59.031 43.478 9.90 0.00 44.40 3.28
546 572 9.967451 CTGATAGAGGTATTCTTAGTCATAGGA 57.033 37.037 0.00 0.00 37.36 2.94
547 573 9.967451 TCTGATAGAGGTATTCTTAGTCATAGG 57.033 37.037 0.00 0.00 37.36 2.57
626 654 6.483640 GGAGCATGATACCGATTCTACTTTTT 59.516 38.462 0.00 0.00 0.00 1.94
627 655 5.992217 GGAGCATGATACCGATTCTACTTTT 59.008 40.000 0.00 0.00 0.00 2.27
628 656 5.542779 GGAGCATGATACCGATTCTACTTT 58.457 41.667 0.00 0.00 0.00 2.66
629 657 5.140747 GGAGCATGATACCGATTCTACTT 57.859 43.478 0.00 0.00 0.00 2.24
630 658 4.792521 GGAGCATGATACCGATTCTACT 57.207 45.455 0.00 0.00 0.00 2.57
638 666 2.732412 ATCTTCGGAGCATGATACCG 57.268 50.000 13.43 13.43 46.71 4.02
639 667 4.218635 TCTGTATCTTCGGAGCATGATACC 59.781 45.833 0.00 0.00 40.00 2.73
640 668 5.378292 TCTGTATCTTCGGAGCATGATAC 57.622 43.478 0.00 0.00 40.69 2.24
641 669 5.105595 CCATCTGTATCTTCGGAGCATGATA 60.106 44.000 0.00 0.00 0.00 2.15
642 670 4.322574 CCATCTGTATCTTCGGAGCATGAT 60.323 45.833 0.00 0.00 0.00 2.45
643 671 3.006217 CCATCTGTATCTTCGGAGCATGA 59.994 47.826 0.00 0.00 0.00 3.07
644 672 3.006217 TCCATCTGTATCTTCGGAGCATG 59.994 47.826 0.00 0.00 0.00 4.06
645 673 3.234353 TCCATCTGTATCTTCGGAGCAT 58.766 45.455 0.00 0.00 0.00 3.79
646 674 2.666317 TCCATCTGTATCTTCGGAGCA 58.334 47.619 0.00 0.00 0.00 4.26
647 675 3.006323 ACATCCATCTGTATCTTCGGAGC 59.994 47.826 0.00 0.00 0.00 4.70
648 676 4.038522 ACACATCCATCTGTATCTTCGGAG 59.961 45.833 0.00 0.00 0.00 4.63
649 677 3.960755 ACACATCCATCTGTATCTTCGGA 59.039 43.478 0.00 0.00 0.00 4.55
650 678 4.327982 ACACATCCATCTGTATCTTCGG 57.672 45.455 0.00 0.00 0.00 4.30
651 679 6.238211 GGAAAACACATCCATCTGTATCTTCG 60.238 42.308 0.00 0.00 36.92 3.79
652 680 6.599244 TGGAAAACACATCCATCTGTATCTTC 59.401 38.462 0.00 0.00 41.98 2.87
653 681 6.484288 TGGAAAACACATCCATCTGTATCTT 58.516 36.000 0.00 0.00 41.98 2.40
654 682 6.065976 TGGAAAACACATCCATCTGTATCT 57.934 37.500 0.00 0.00 41.98 1.98
763 791 0.530288 TACGCATGCTGCTGACAGTA 59.470 50.000 17.13 4.93 46.30 2.74
777 805 0.613260 AGCAAGAGATTGGGTACGCA 59.387 50.000 8.80 8.80 0.00 5.24
778 806 1.009829 CAGCAAGAGATTGGGTACGC 58.990 55.000 2.35 2.35 0.00 4.42
779 807 2.002586 CACAGCAAGAGATTGGGTACG 58.997 52.381 0.00 0.00 0.00 3.67
780 808 3.059352 ACACAGCAAGAGATTGGGTAC 57.941 47.619 0.00 0.00 0.00 3.34
781 809 3.788227 AACACAGCAAGAGATTGGGTA 57.212 42.857 0.00 0.00 0.00 3.69
782 810 2.664402 AACACAGCAAGAGATTGGGT 57.336 45.000 0.00 0.00 0.00 4.51
783 811 4.460382 ACAATAACACAGCAAGAGATTGGG 59.540 41.667 0.00 0.00 0.00 4.12
784 812 5.048504 ACACAATAACACAGCAAGAGATTGG 60.049 40.000 0.00 0.00 0.00 3.16
785 813 6.005583 ACACAATAACACAGCAAGAGATTG 57.994 37.500 0.00 0.00 0.00 2.67
786 814 5.764686 TGACACAATAACACAGCAAGAGATT 59.235 36.000 0.00 0.00 0.00 2.40
787 815 5.180117 GTGACACAATAACACAGCAAGAGAT 59.820 40.000 0.00 0.00 35.06 2.75
788 816 4.511454 GTGACACAATAACACAGCAAGAGA 59.489 41.667 0.00 0.00 35.06 3.10
789 817 4.512944 AGTGACACAATAACACAGCAAGAG 59.487 41.667 8.59 0.00 37.05 2.85
790 818 4.450976 AGTGACACAATAACACAGCAAGA 58.549 39.130 8.59 0.00 37.05 3.02
791 819 4.818534 AGTGACACAATAACACAGCAAG 57.181 40.909 8.59 0.00 37.05 4.01
792 820 6.262049 ACAATAGTGACACAATAACACAGCAA 59.738 34.615 8.59 0.00 37.05 3.91
793 821 5.762711 ACAATAGTGACACAATAACACAGCA 59.237 36.000 8.59 0.00 37.05 4.41
794 822 6.241207 ACAATAGTGACACAATAACACAGC 57.759 37.500 8.59 0.00 37.05 4.40
795 823 9.515020 AAAAACAATAGTGACACAATAACACAG 57.485 29.630 8.59 0.00 37.05 3.66
796 824 9.509855 GAAAAACAATAGTGACACAATAACACA 57.490 29.630 8.59 0.00 37.05 3.72
797 825 9.509855 TGAAAAACAATAGTGACACAATAACAC 57.490 29.630 8.59 0.00 35.15 3.32
801 829 9.891828 GACATGAAAAACAATAGTGACACAATA 57.108 29.630 8.59 0.00 0.00 1.90
802 830 8.412456 TGACATGAAAAACAATAGTGACACAAT 58.588 29.630 8.59 0.00 0.00 2.71
803 831 7.766283 TGACATGAAAAACAATAGTGACACAA 58.234 30.769 8.59 0.00 0.00 3.33
804 832 7.281999 TCTGACATGAAAAACAATAGTGACACA 59.718 33.333 8.59 0.00 0.00 3.72
805 833 7.639039 TCTGACATGAAAAACAATAGTGACAC 58.361 34.615 0.00 0.00 0.00 3.67
806 834 7.520453 GCTCTGACATGAAAAACAATAGTGACA 60.520 37.037 0.00 0.00 0.00 3.58
807 835 6.798959 GCTCTGACATGAAAAACAATAGTGAC 59.201 38.462 0.00 0.00 0.00 3.67
808 836 6.347644 CGCTCTGACATGAAAAACAATAGTGA 60.348 38.462 0.00 0.00 0.00 3.41
809 837 5.791974 CGCTCTGACATGAAAAACAATAGTG 59.208 40.000 0.00 0.00 0.00 2.74
810 838 5.617751 GCGCTCTGACATGAAAAACAATAGT 60.618 40.000 0.00 0.00 0.00 2.12
811 839 4.790140 GCGCTCTGACATGAAAAACAATAG 59.210 41.667 0.00 0.00 0.00 1.73
877 905 9.330063 ACATTAGATGAATGACGTGAACATTAT 57.670 29.630 0.00 0.00 46.94 1.28
878 906 8.716646 ACATTAGATGAATGACGTGAACATTA 57.283 30.769 0.00 0.00 46.94 1.90
919 947 5.766222 TGCAGCTTCTCTGAAAGAAATTTC 58.234 37.500 10.33 10.33 46.34 2.17
999 1029 3.077359 CCAACCTTGAAGAGTGGACATC 58.923 50.000 8.00 0.00 0.00 3.06
1054 1084 2.043227 GAAGGATCCCAGTCGAGGAAT 58.957 52.381 8.55 0.00 36.85 3.01
1208 1247 3.080300 TGTTGTTAAATGGGCGAGGAT 57.920 42.857 0.00 0.00 0.00 3.24
1223 1262 4.405116 TGTTTAGGTACGAGGTTGTTGT 57.595 40.909 0.00 0.00 0.00 3.32
1267 1306 3.418047 GCATGTAAGTACCTTGGTTGGT 58.582 45.455 0.00 0.00 43.66 3.67
1281 1320 3.006940 GGGAATCTGACAACGCATGTAA 58.993 45.455 0.00 0.00 44.12 2.41
1357 1401 3.361786 CATAGGAAACACCCCCGAAAAT 58.638 45.455 0.00 0.00 40.05 1.82
1358 1402 2.555670 CCATAGGAAACACCCCCGAAAA 60.556 50.000 0.00 0.00 40.05 2.29
1720 1764 2.429610 GCATGCTTTCACCAGGATCAAT 59.570 45.455 11.37 0.00 0.00 2.57
1742 1788 1.405933 GGGGAAGATGCCAATTGTTGC 60.406 52.381 4.43 2.10 0.00 4.17
1785 1831 3.118531 ACCAACCAGGAGAAGCATATCT 58.881 45.455 0.00 0.00 41.22 1.98
2280 2357 3.270027 TCTGACAACGCCATATTCCAAG 58.730 45.455 0.00 0.00 0.00 3.61
2292 2369 3.914364 GCTAAAAATTGGCTCTGACAACG 59.086 43.478 0.00 0.00 31.33 4.10
2415 2492 6.544928 TCTCCTACATAACTGCAAATGAGA 57.455 37.500 9.62 0.00 0.00 3.27
2453 2530 1.129998 CTGCAAAATCCTCAGTGCTCG 59.870 52.381 0.00 0.00 37.87 5.03
2496 2573 6.223120 TCTCTTATATGCGCATAAGCTTGAA 58.777 36.000 32.02 17.44 38.07 2.69
2533 2632 6.189036 AGAAATCCACTAAGCCCTTATACC 57.811 41.667 0.00 0.00 0.00 2.73
2535 2634 7.472381 CGGTTAGAAATCCACTAAGCCCTTATA 60.472 40.741 0.00 0.00 41.96 0.98
2548 2647 1.986631 TGGGGTTCGGTTAGAAATCCA 59.013 47.619 0.00 0.00 41.10 3.41
2563 2662 1.129058 CTCTAGCCGGTTATTGGGGT 58.871 55.000 1.90 0.00 37.81 4.95
2566 2665 2.040178 ACTCCTCTAGCCGGTTATTGG 58.960 52.381 1.90 6.86 0.00 3.16
2605 2704 1.143401 GGCTAGGCACCGGTTAGAC 59.857 63.158 14.69 8.77 0.00 2.59
2615 2714 0.185901 GATTGGGGATTGGCTAGGCA 59.814 55.000 16.16 16.16 0.00 4.75
2616 2715 0.890996 CGATTGGGGATTGGCTAGGC 60.891 60.000 9.85 9.85 0.00 3.93
2635 2734 1.518367 TGAGGATCCCCATTACCACC 58.482 55.000 8.55 0.00 33.88 4.61
2636 2735 2.422945 GGTTGAGGATCCCCATTACCAC 60.423 54.545 11.31 0.00 32.08 4.16
2637 2736 1.850345 GGTTGAGGATCCCCATTACCA 59.150 52.381 11.31 0.00 32.08 3.25
2639 2738 1.814248 GCGGTTGAGGATCCCCATTAC 60.814 57.143 8.55 0.00 33.88 1.89
2642 2741 2.919043 GCGGTTGAGGATCCCCAT 59.081 61.111 8.55 0.00 33.88 4.00
2646 2745 4.467084 TGGCGCGGTTGAGGATCC 62.467 66.667 8.83 2.48 0.00 3.36
2685 2792 3.599285 TTACTTGGCCACCGAGCGG 62.599 63.158 3.88 7.48 38.56 5.52
2686 2793 1.231958 TTTTACTTGGCCACCGAGCG 61.232 55.000 3.88 0.00 38.56 5.03
2687 2794 0.955905 TTTTTACTTGGCCACCGAGC 59.044 50.000 3.88 0.00 38.56 5.03
2710 2817 3.699038 AGAGGAAGAGGAGACGAAATGAG 59.301 47.826 0.00 0.00 0.00 2.90
2711 2818 3.697045 GAGAGGAAGAGGAGACGAAATGA 59.303 47.826 0.00 0.00 0.00 2.57
2712 2819 3.181480 GGAGAGGAAGAGGAGACGAAATG 60.181 52.174 0.00 0.00 0.00 2.32
2713 2820 3.028130 GGAGAGGAAGAGGAGACGAAAT 58.972 50.000 0.00 0.00 0.00 2.17
2714 2821 2.448453 GGAGAGGAAGAGGAGACGAAA 58.552 52.381 0.00 0.00 0.00 3.46
2737 2845 0.744281 GAGGAGAAGAAGCGGAGGAG 59.256 60.000 0.00 0.00 0.00 3.69
2781 2889 4.195334 CCATTGGGAGGCGGGAGG 62.195 72.222 0.00 0.00 35.59 4.30
2782 2890 3.406595 GACCATTGGGAGGCGGGAG 62.407 68.421 7.78 0.00 38.05 4.30
2785 2893 4.856801 CCGACCATTGGGAGGCGG 62.857 72.222 7.78 10.40 39.23 6.13
2786 2894 3.781307 TCCGACCATTGGGAGGCG 61.781 66.667 7.78 5.23 38.05 5.52
2788 2896 2.590092 GGTCCGACCATTGGGAGG 59.410 66.667 13.05 9.81 38.42 4.30
2789 2897 2.590092 GGGTCCGACCATTGGGAG 59.410 66.667 19.43 0.06 41.02 4.30
2790 2898 3.012722 GGGGTCCGACCATTGGGA 61.013 66.667 19.43 0.00 41.02 4.37
2791 2899 2.689691 ATGGGGTCCGACCATTGGG 61.690 63.158 19.43 0.00 46.25 4.12
2792 2900 3.006677 ATGGGGTCCGACCATTGG 58.993 61.111 19.43 0.00 46.25 3.16
2797 2905 4.530857 CAGCGATGGGGTCCGACC 62.531 72.222 9.30 9.30 37.60 4.79
2798 2906 3.718210 GACAGCGATGGGGTCCGAC 62.718 68.421 5.32 0.00 0.00 4.79
2799 2907 3.458163 GACAGCGATGGGGTCCGA 61.458 66.667 5.32 0.00 0.00 4.55
2800 2908 4.873129 CGACAGCGATGGGGTCCG 62.873 72.222 5.32 0.00 40.82 4.79
2837 2945 4.120331 GAGTGGTGGCATTGCGGC 62.120 66.667 1.91 0.00 41.67 6.53
2839 2947 3.443045 GGGAGTGGTGGCATTGCG 61.443 66.667 1.91 0.00 0.00 4.85
2840 2948 2.283101 TGGGAGTGGTGGCATTGC 60.283 61.111 0.00 0.00 0.00 3.56
2841 2949 2.334946 CGTGGGAGTGGTGGCATTG 61.335 63.158 0.00 0.00 0.00 2.82
2842 2950 2.034066 CGTGGGAGTGGTGGCATT 59.966 61.111 0.00 0.00 0.00 3.56
2843 2951 4.033776 CCGTGGGAGTGGTGGCAT 62.034 66.667 0.00 0.00 0.00 4.40
2845 2953 4.265056 AACCGTGGGAGTGGTGGC 62.265 66.667 0.00 0.00 38.82 5.01
2846 2954 2.032071 GAACCGTGGGAGTGGTGG 59.968 66.667 0.00 0.00 38.82 4.61
2850 2958 3.530910 AAGGCGAACCGTGGGAGTG 62.531 63.158 0.00 0.00 42.76 3.51
2855 2963 2.966309 GCTTGAAGGCGAACCGTGG 61.966 63.158 0.00 0.00 42.76 4.94
2856 2964 1.507141 AAGCTTGAAGGCGAACCGTG 61.507 55.000 0.00 0.00 42.76 4.94
2857 2965 1.227853 AAGCTTGAAGGCGAACCGT 60.228 52.632 0.00 0.00 42.76 4.83
2858 2966 1.497722 GAAGCTTGAAGGCGAACCG 59.502 57.895 2.10 0.00 42.76 4.44
2859 2967 1.497722 CGAAGCTTGAAGGCGAACC 59.502 57.895 2.10 0.00 37.29 3.62
2924 3032 2.202756 GCCTGGTAGTCGGCGAAG 60.203 66.667 12.92 4.60 36.45 3.79
2928 3036 4.162690 CCCTGCCTGGTAGTCGGC 62.163 72.222 10.99 0.00 46.46 5.54
2929 3037 2.291043 AACCCTGCCTGGTAGTCGG 61.291 63.158 10.99 8.13 37.76 4.79
2930 3038 1.079127 CAACCCTGCCTGGTAGTCG 60.079 63.158 10.99 3.10 37.76 4.18
2931 3039 0.690762 TTCAACCCTGCCTGGTAGTC 59.309 55.000 10.99 0.00 37.76 2.59
2932 3040 0.400594 GTTCAACCCTGCCTGGTAGT 59.599 55.000 10.99 0.00 37.76 2.73
2933 3041 0.693049 AGTTCAACCCTGCCTGGTAG 59.307 55.000 4.63 4.63 37.76 3.18
2934 3042 0.400213 CAGTTCAACCCTGCCTGGTA 59.600 55.000 0.00 0.00 37.76 3.25
2935 3043 1.151450 CAGTTCAACCCTGCCTGGT 59.849 57.895 0.00 0.00 41.55 4.00
2936 3044 4.085876 CAGTTCAACCCTGCCTGG 57.914 61.111 0.00 0.00 0.00 4.45
2945 3053 3.456280 TGCCTCAAAATTGCAGTTCAAC 58.544 40.909 0.00 0.00 37.53 3.18
2956 3064 2.564062 CACTCCCAACATGCCTCAAAAT 59.436 45.455 0.00 0.00 0.00 1.82
2980 3088 2.425312 TCACGCACAAAATTCACAAGGT 59.575 40.909 0.00 0.00 0.00 3.50
2982 3090 2.468777 GCTCACGCACAAAATTCACAAG 59.531 45.455 0.00 0.00 35.78 3.16
2999 3107 1.774254 TGAAGAAGAACCCCTTGCTCA 59.226 47.619 0.00 0.00 34.68 4.26
3046 3154 8.397906 CCACATAACATTATTCGAGTTTCACAT 58.602 33.333 0.00 0.00 0.00 3.21
3050 3158 9.490663 CTTTCCACATAACATTATTCGAGTTTC 57.509 33.333 0.00 0.00 0.00 2.78
3056 3164 8.548721 GGTAGACTTTCCACATAACATTATTCG 58.451 37.037 0.00 0.00 0.00 3.34
3057 3165 8.837389 GGGTAGACTTTCCACATAACATTATTC 58.163 37.037 0.00 0.00 0.00 1.75
3058 3166 8.333235 TGGGTAGACTTTCCACATAACATTATT 58.667 33.333 0.00 0.00 0.00 1.40
3059 3167 7.867921 TGGGTAGACTTTCCACATAACATTAT 58.132 34.615 0.00 0.00 0.00 1.28
3060 3168 7.260387 TGGGTAGACTTTCCACATAACATTA 57.740 36.000 0.00 0.00 0.00 1.90
3061 3169 6.134535 TGGGTAGACTTTCCACATAACATT 57.865 37.500 0.00 0.00 0.00 2.71
3062 3170 5.772393 TGGGTAGACTTTCCACATAACAT 57.228 39.130 0.00 0.00 0.00 2.71
3063 3171 5.163184 TGTTGGGTAGACTTTCCACATAACA 60.163 40.000 0.00 0.00 0.00 2.41
3064 3172 5.310451 TGTTGGGTAGACTTTCCACATAAC 58.690 41.667 0.00 0.00 0.00 1.89
3065 3173 5.072600 ACTGTTGGGTAGACTTTCCACATAA 59.927 40.000 0.00 0.00 0.00 1.90
3066 3174 4.595781 ACTGTTGGGTAGACTTTCCACATA 59.404 41.667 0.00 0.00 0.00 2.29
3067 3175 3.394606 ACTGTTGGGTAGACTTTCCACAT 59.605 43.478 0.00 0.00 0.00 3.21
3068 3176 2.775384 ACTGTTGGGTAGACTTTCCACA 59.225 45.455 0.00 0.00 0.00 4.17
3069 3177 3.400255 GACTGTTGGGTAGACTTTCCAC 58.600 50.000 0.00 0.00 0.00 4.02
3070 3178 2.036733 CGACTGTTGGGTAGACTTTCCA 59.963 50.000 0.00 0.00 0.00 3.53
3071 3179 2.298163 TCGACTGTTGGGTAGACTTTCC 59.702 50.000 0.00 0.00 0.00 3.13
3072 3180 3.655276 TCGACTGTTGGGTAGACTTTC 57.345 47.619 0.00 0.00 0.00 2.62
3073 3181 3.306780 CCATCGACTGTTGGGTAGACTTT 60.307 47.826 0.00 0.00 32.28 2.66
3074 3182 2.233922 CCATCGACTGTTGGGTAGACTT 59.766 50.000 0.00 0.00 32.28 3.01
3075 3183 1.825474 CCATCGACTGTTGGGTAGACT 59.175 52.381 0.00 0.00 32.28 3.24
3076 3184 1.549170 ACCATCGACTGTTGGGTAGAC 59.451 52.381 7.65 0.00 38.97 2.59
3077 3185 1.933021 ACCATCGACTGTTGGGTAGA 58.067 50.000 7.65 0.00 38.97 2.59
3078 3186 2.289444 ACAACCATCGACTGTTGGGTAG 60.289 50.000 24.52 9.93 44.72 3.18
3079 3187 1.695242 ACAACCATCGACTGTTGGGTA 59.305 47.619 24.52 0.00 44.72 3.69
3080 3188 0.472471 ACAACCATCGACTGTTGGGT 59.528 50.000 24.52 10.15 44.72 4.51
3081 3189 0.874390 CACAACCATCGACTGTTGGG 59.126 55.000 24.52 19.96 44.72 4.12
3082 3190 0.238289 GCACAACCATCGACTGTTGG 59.762 55.000 24.52 15.34 44.72 3.77
3083 3191 0.943673 TGCACAACCATCGACTGTTG 59.056 50.000 21.16 21.16 45.65 3.33
3084 3192 1.229428 CTGCACAACCATCGACTGTT 58.771 50.000 0.00 0.00 0.00 3.16
3085 3193 0.106708 ACTGCACAACCATCGACTGT 59.893 50.000 0.00 0.00 0.00 3.55
3086 3194 1.229428 AACTGCACAACCATCGACTG 58.771 50.000 0.00 0.00 0.00 3.51
3087 3195 1.873591 GAAACTGCACAACCATCGACT 59.126 47.619 0.00 0.00 0.00 4.18
3088 3196 1.069227 GGAAACTGCACAACCATCGAC 60.069 52.381 0.00 0.00 0.00 4.20
3089 3197 1.202758 AGGAAACTGCACAACCATCGA 60.203 47.619 0.00 0.00 41.13 3.59
3090 3198 1.197721 GAGGAAACTGCACAACCATCG 59.802 52.381 0.00 0.00 44.43 3.84
3091 3199 1.197721 CGAGGAAACTGCACAACCATC 59.802 52.381 0.00 0.00 44.43 3.51
3092 3200 1.238439 CGAGGAAACTGCACAACCAT 58.762 50.000 0.00 0.00 44.43 3.55
3093 3201 0.817634 CCGAGGAAACTGCACAACCA 60.818 55.000 0.00 0.00 44.43 3.67
3094 3202 0.818040 ACCGAGGAAACTGCACAACC 60.818 55.000 0.00 0.00 44.43 3.77
3095 3203 1.021968 AACCGAGGAAACTGCACAAC 58.978 50.000 0.00 0.00 44.43 3.32
3096 3204 1.757682 AAACCGAGGAAACTGCACAA 58.242 45.000 0.00 0.00 44.43 3.33
3097 3205 1.403679 CAAAACCGAGGAAACTGCACA 59.596 47.619 0.00 0.00 44.43 4.57
3098 3206 1.864029 GCAAAACCGAGGAAACTGCAC 60.864 52.381 0.00 0.00 44.43 4.57
3099 3207 0.383949 GCAAAACCGAGGAAACTGCA 59.616 50.000 0.00 0.00 44.43 4.41
3100 3208 0.318699 GGCAAAACCGAGGAAACTGC 60.319 55.000 0.00 0.00 44.43 4.40
3101 3209 3.865700 GGCAAAACCGAGGAAACTG 57.134 52.632 0.00 0.00 44.43 3.16
3111 3219 3.670377 AGCTTCCGCGGCAAAACC 61.670 61.111 23.51 0.61 42.32 3.27
3112 3220 2.429069 CAGCTTCCGCGGCAAAAC 60.429 61.111 23.51 6.01 42.32 2.43
3113 3221 3.669344 CCAGCTTCCGCGGCAAAA 61.669 61.111 23.51 9.22 42.32 2.44
3114 3222 4.634703 TCCAGCTTCCGCGGCAAA 62.635 61.111 23.51 10.08 42.32 3.68
3115 3223 3.918253 ATTCCAGCTTCCGCGGCAA 62.918 57.895 23.51 14.85 42.32 4.52
3116 3224 4.408821 ATTCCAGCTTCCGCGGCA 62.409 61.111 23.51 9.50 42.32 5.69
3117 3225 3.880846 CATTCCAGCTTCCGCGGC 61.881 66.667 23.51 9.39 42.32 6.53
3118 3226 3.204827 CCATTCCAGCTTCCGCGG 61.205 66.667 22.12 22.12 42.32 6.46
3119 3227 3.204827 CCCATTCCAGCTTCCGCG 61.205 66.667 0.00 0.00 42.32 6.46
3120 3228 3.521796 GCCCATTCCAGCTTCCGC 61.522 66.667 0.00 0.00 0.00 5.54
3121 3229 2.045045 TGCCCATTCCAGCTTCCG 60.045 61.111 0.00 0.00 0.00 4.30
3122 3230 1.000396 ACTGCCCATTCCAGCTTCC 60.000 57.895 0.00 0.00 33.65 3.46
3123 3231 0.610232 ACACTGCCCATTCCAGCTTC 60.610 55.000 0.00 0.00 33.65 3.86
3124 3232 0.610232 GACACTGCCCATTCCAGCTT 60.610 55.000 0.00 0.00 33.65 3.74
3125 3233 1.001641 GACACTGCCCATTCCAGCT 60.002 57.895 0.00 0.00 33.65 4.24
3126 3234 0.682209 ATGACACTGCCCATTCCAGC 60.682 55.000 0.00 0.00 33.65 4.85
3127 3235 1.843368 AATGACACTGCCCATTCCAG 58.157 50.000 0.00 0.00 36.41 3.86
3128 3236 2.307496 AAATGACACTGCCCATTCCA 57.693 45.000 0.00 0.00 32.36 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.