Multiple sequence alignment - TraesCS6D01G061700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G061700 chr6D 100.000 2536 0 0 1 2536 28709123 28706588 0.000000e+00 4684.0
1 TraesCS6D01G061700 chr6D 89.877 731 53 15 789 1509 29384564 29385283 0.000000e+00 920.0
2 TraesCS6D01G061700 chr6D 78.093 388 57 16 2117 2495 28991636 28991268 1.180000e-53 220.0
3 TraesCS6D01G061700 chr6D 91.870 123 7 2 1556 1675 29385300 29385422 4.340000e-38 169.0
4 TraesCS6D01G061700 chr6B 89.542 1004 69 19 722 1697 61490176 61491171 0.000000e+00 1240.0
5 TraesCS6D01G061700 chr6B 93.956 728 35 5 1 724 61489375 61490097 0.000000e+00 1092.0
6 TraesCS6D01G061700 chr6B 87.601 863 70 17 846 1675 59588527 59587669 0.000000e+00 966.0
7 TraesCS6D01G061700 chr6B 87.157 693 59 12 846 1515 58807793 58807108 0.000000e+00 760.0
8 TraesCS6D01G061700 chr6B 88.522 636 57 14 789 1413 58320000 58319370 0.000000e+00 756.0
9 TraesCS6D01G061700 chr6B 84.103 780 89 24 789 1547 78151550 78150785 0.000000e+00 721.0
10 TraesCS6D01G061700 chr6B 81.081 777 107 30 789 1547 77958148 77957394 3.640000e-163 584.0
11 TraesCS6D01G061700 chr6B 85.176 398 45 8 1909 2295 61491279 61491673 1.830000e-106 396.0
12 TraesCS6D01G061700 chr6B 75.676 296 59 10 1901 2189 58316982 58316693 4.400000e-28 135.0
13 TraesCS6D01G061700 chr6B 75.338 296 60 10 1901 2189 58315204 58314915 2.050000e-26 130.0
14 TraesCS6D01G061700 chr6B 82.645 121 18 3 2376 2495 60929797 60929915 1.240000e-18 104.0
15 TraesCS6D01G061700 chr6B 89.231 65 4 2 1809 1870 61491213 61491277 7.520000e-11 78.7
16 TraesCS6D01G061700 chr6B 100.000 28 0 0 2503 2530 474193449 474193476 5.000000e-03 52.8
17 TraesCS6D01G061700 chr6A 90.962 863 55 16 819 1675 33008826 33007981 0.000000e+00 1140.0
18 TraesCS6D01G061700 chr6A 86.538 988 65 26 705 1680 33948941 33949872 0.000000e+00 1026.0
19 TraesCS6D01G061700 chr6A 87.627 590 47 9 793 1368 32913827 32913250 0.000000e+00 662.0
20 TraesCS6D01G061700 chr6A 83.042 401 33 17 1814 2192 33950078 33950465 5.230000e-87 331.0
21 TraesCS6D01G061700 chr6A 79.624 319 39 15 2189 2495 33950787 33951091 3.310000e-49 206.0
22 TraesCS6D01G061700 chrUn 87.616 541 50 13 844 1379 27335136 27335664 1.670000e-171 612.0
23 TraesCS6D01G061700 chrUn 100.000 28 0 0 857 884 103527669 103527642 5.000000e-03 52.8
24 TraesCS6D01G061700 chr2D 86.071 560 61 13 787 1338 574436379 574435829 1.010000e-163 586.0
25 TraesCS6D01G061700 chr1B 85.791 373 39 6 5 374 629501023 629500662 1.420000e-102 383.0
26 TraesCS6D01G061700 chr2A 100.000 34 0 0 2503 2536 705885086 705885119 2.110000e-06 63.9
27 TraesCS6D01G061700 chr2A 100.000 29 0 0 2502 2530 775551944 775551972 1.000000e-03 54.7
28 TraesCS6D01G061700 chr2B 97.059 34 1 0 2503 2536 453182676 453182643 9.800000e-05 58.4
29 TraesCS6D01G061700 chr7A 96.875 32 1 0 2505 2536 457867787 457867756 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G061700 chr6D 28706588 28709123 2535 True 4684.000000 4684 100.000000 1 2536 1 chr6D.!!$R1 2535
1 TraesCS6D01G061700 chr6D 29384564 29385422 858 False 544.500000 920 90.873500 789 1675 2 chr6D.!!$F1 886
2 TraesCS6D01G061700 chr6B 59587669 59588527 858 True 966.000000 966 87.601000 846 1675 1 chr6B.!!$R2 829
3 TraesCS6D01G061700 chr6B 58807108 58807793 685 True 760.000000 760 87.157000 846 1515 1 chr6B.!!$R1 669
4 TraesCS6D01G061700 chr6B 78150785 78151550 765 True 721.000000 721 84.103000 789 1547 1 chr6B.!!$R4 758
5 TraesCS6D01G061700 chr6B 61489375 61491673 2298 False 701.675000 1240 89.476250 1 2295 4 chr6B.!!$F3 2294
6 TraesCS6D01G061700 chr6B 77957394 77958148 754 True 584.000000 584 81.081000 789 1547 1 chr6B.!!$R3 758
7 TraesCS6D01G061700 chr6B 58314915 58320000 5085 True 340.333333 756 79.845333 789 2189 3 chr6B.!!$R5 1400
8 TraesCS6D01G061700 chr6A 33007981 33008826 845 True 1140.000000 1140 90.962000 819 1675 1 chr6A.!!$R2 856
9 TraesCS6D01G061700 chr6A 32913250 32913827 577 True 662.000000 662 87.627000 793 1368 1 chr6A.!!$R1 575
10 TraesCS6D01G061700 chr6A 33948941 33951091 2150 False 521.000000 1026 83.068000 705 2495 3 chr6A.!!$F1 1790
11 TraesCS6D01G061700 chrUn 27335136 27335664 528 False 612.000000 612 87.616000 844 1379 1 chrUn.!!$F1 535
12 TraesCS6D01G061700 chr2D 574435829 574436379 550 True 586.000000 586 86.071000 787 1338 1 chr2D.!!$R1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
349 350 0.106149 CGCAGGGGTGGAGGTATAAC 59.894 60.0 0.0 0.0 0.0 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1762 2028 0.036306 AATCCGTCACCACCAACCTC 59.964 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.576648 GTCTTAGAACCATCCCCACCTT 59.423 50.000 0.00 0.00 0.00 3.50
58 59 0.336048 CCATCCCCACCTTGGTTGAT 59.664 55.000 0.00 0.00 35.17 2.57
61 62 0.404040 TCCCCACCTTGGTTGATGAC 59.596 55.000 0.00 0.00 35.17 3.06
73 74 1.815003 GTTGATGACTGCTTTGGAGGG 59.185 52.381 0.00 0.00 0.00 4.30
101 102 7.861372 GGCTCAAAACCTTTAGAAAAGTAGAAC 59.139 37.037 0.00 0.00 0.00 3.01
102 103 7.586664 GCTCAAAACCTTTAGAAAAGTAGAACG 59.413 37.037 0.00 0.00 0.00 3.95
103 104 8.721019 TCAAAACCTTTAGAAAAGTAGAACGA 57.279 30.769 0.00 0.00 0.00 3.85
120 121 5.043189 GAACGAAAATTAGTTCTGGTGGG 57.957 43.478 10.64 0.00 42.34 4.61
126 127 7.094506 ACGAAAATTAGTTCTGGTGGGTTTATC 60.095 37.037 0.00 0.00 0.00 1.75
127 128 7.094549 CGAAAATTAGTTCTGGTGGGTTTATCA 60.095 37.037 0.00 0.00 0.00 2.15
162 163 4.156008 GGCAATTTGGAAGAGTCGTAATGT 59.844 41.667 0.00 0.00 0.00 2.71
252 253 4.481368 TGGCGTGGTCTATTTTGTAGAT 57.519 40.909 0.00 0.00 0.00 1.98
298 299 1.742268 GAGCTGGGATCAAAGTTGCTC 59.258 52.381 0.00 0.00 38.58 4.26
308 309 3.305964 TCAAAGTTGCTCGAACGAGTAG 58.694 45.455 22.03 8.58 43.70 2.57
349 350 0.106149 CGCAGGGGTGGAGGTATAAC 59.894 60.000 0.00 0.00 0.00 1.89
379 380 5.398169 CGACTAGAAGACTGATGGATATGC 58.602 45.833 0.00 0.00 0.00 3.14
510 511 2.131972 TGTGTGTCGTTGTAGCATGAC 58.868 47.619 0.00 0.00 0.00 3.06
514 515 2.155732 GTGTCGTTGTAGCATGACTGTG 59.844 50.000 0.00 0.00 32.64 3.66
518 519 2.157668 CGTTGTAGCATGACTGTGGTTC 59.842 50.000 0.00 0.00 0.00 3.62
521 522 4.882842 TGTAGCATGACTGTGGTTCTTA 57.117 40.909 0.00 0.00 0.00 2.10
525 526 3.441572 AGCATGACTGTGGTTCTTATTGC 59.558 43.478 0.00 0.00 0.00 3.56
532 533 1.467342 GTGGTTCTTATTGCGGGTGAC 59.533 52.381 0.00 0.00 0.00 3.67
537 538 4.321675 GGTTCTTATTGCGGGTGACATTTT 60.322 41.667 0.00 0.00 0.00 1.82
652 657 3.955771 TCGTAGTTTGCTGTTGGTTTC 57.044 42.857 0.00 0.00 0.00 2.78
653 658 2.614983 TCGTAGTTTGCTGTTGGTTTCC 59.385 45.455 0.00 0.00 0.00 3.13
656 661 1.756538 AGTTTGCTGTTGGTTTCCCTG 59.243 47.619 0.00 0.00 0.00 4.45
672 677 2.024080 TCCCTGAATGGAAATTGGAGGG 60.024 50.000 0.00 0.00 40.19 4.30
738 824 7.806014 GTGTTACATGTAATTTCATCCGTTGTT 59.194 33.333 20.72 0.00 0.00 2.83
740 826 5.160641 ACATGTAATTTCATCCGTTGTTGC 58.839 37.500 0.00 0.00 0.00 4.17
762 848 3.635331 TGTACTCAAGTTTCGAACGGAG 58.365 45.455 0.00 5.24 40.87 4.63
763 849 2.150397 ACTCAAGTTTCGAACGGAGG 57.850 50.000 14.99 2.13 40.02 4.30
764 850 1.684983 ACTCAAGTTTCGAACGGAGGA 59.315 47.619 14.99 3.59 40.02 3.71
765 851 2.059541 CTCAAGTTTCGAACGGAGGAC 58.940 52.381 0.00 0.00 35.47 3.85
803 890 4.699522 GGCTCGCTTGGAACCGGT 62.700 66.667 0.00 0.00 0.00 5.28
816 906 5.394224 TGGAACCGGTAAAATCCAAAATC 57.606 39.130 20.99 4.72 38.95 2.17
919 1017 4.096003 CCCGTCCAATCCCGTGCT 62.096 66.667 0.00 0.00 0.00 4.40
1308 1452 2.358247 GTCACCGCCATGGACGTT 60.358 61.111 18.40 4.14 42.00 3.99
1347 1491 2.045131 GGGACGCACTCTCTACGGT 61.045 63.158 0.00 0.00 0.00 4.83
1443 1595 1.205657 TTCGTTTCTGAGTGCGTGTC 58.794 50.000 0.00 0.00 0.00 3.67
1444 1596 0.596600 TCGTTTCTGAGTGCGTGTCC 60.597 55.000 0.00 0.00 0.00 4.02
1456 1656 0.391130 GCGTGTCCTGCTGTTCCATA 60.391 55.000 0.00 0.00 0.00 2.74
1473 1681 7.177184 TGTTCCATAGGTCTGTGTAGTTAGTA 58.823 38.462 0.00 0.00 0.00 1.82
1496 1705 3.393089 AGGCGATGGATCTGAATGTAC 57.607 47.619 0.00 0.00 0.00 2.90
1542 1792 9.871238 AAGAAATGAATCTGAATGAAATGGAAG 57.129 29.630 0.00 0.00 0.00 3.46
1550 1802 8.641498 ATCTGAATGAAATGGAAGTTGTACTT 57.359 30.769 0.00 0.00 41.95 2.24
1565 1817 7.809546 AGTTGTACTTCATCTCTCGATATGA 57.190 36.000 0.00 0.00 0.00 2.15
1566 1818 8.402798 AGTTGTACTTCATCTCTCGATATGAT 57.597 34.615 6.19 0.00 32.40 2.45
1567 1819 8.855110 AGTTGTACTTCATCTCTCGATATGATT 58.145 33.333 6.19 1.44 32.40 2.57
1684 1950 0.173481 GGCTCCAAAATTTCCGCCTC 59.827 55.000 10.81 0.00 34.80 4.70
1686 1952 1.402852 GCTCCAAAATTTCCGCCTCAC 60.403 52.381 0.00 0.00 0.00 3.51
1717 1983 4.494350 ACCACGCGGTATACTATTACAG 57.506 45.455 12.47 0.00 46.71 2.74
1718 1984 3.885297 ACCACGCGGTATACTATTACAGT 59.115 43.478 12.47 0.00 46.71 3.55
1719 1985 4.339247 ACCACGCGGTATACTATTACAGTT 59.661 41.667 12.47 0.00 46.71 3.16
1721 1987 6.207417 ACCACGCGGTATACTATTACAGTTAT 59.793 38.462 12.47 0.00 46.71 1.89
1723 1989 7.596248 CCACGCGGTATACTATTACAGTTATTT 59.404 37.037 12.47 0.00 38.80 1.40
1725 1991 9.533253 ACGCGGTATACTATTACAGTTATTTTT 57.467 29.630 12.47 0.00 38.80 1.94
1743 2009 4.513198 TTTTTGGTTATGCAGTGTAGCC 57.487 40.909 0.00 0.00 0.00 3.93
1744 2010 3.433306 TTTGGTTATGCAGTGTAGCCT 57.567 42.857 0.00 0.00 0.00 4.58
1745 2011 2.401583 TGGTTATGCAGTGTAGCCTG 57.598 50.000 0.00 0.00 35.49 4.85
1746 2012 1.905894 TGGTTATGCAGTGTAGCCTGA 59.094 47.619 0.00 0.00 34.23 3.86
1747 2013 2.280628 GGTTATGCAGTGTAGCCTGAC 58.719 52.381 0.00 0.00 34.23 3.51
1748 2014 2.280628 GTTATGCAGTGTAGCCTGACC 58.719 52.381 0.00 0.00 34.23 4.02
1749 2015 1.567357 TATGCAGTGTAGCCTGACCA 58.433 50.000 0.00 0.00 34.23 4.02
1750 2016 0.692476 ATGCAGTGTAGCCTGACCAA 59.308 50.000 0.00 0.00 34.23 3.67
1751 2017 0.250295 TGCAGTGTAGCCTGACCAAC 60.250 55.000 0.00 0.00 34.23 3.77
1752 2018 0.955919 GCAGTGTAGCCTGACCAACC 60.956 60.000 0.00 0.00 34.23 3.77
1753 2019 0.321653 CAGTGTAGCCTGACCAACCC 60.322 60.000 0.00 0.00 34.23 4.11
1754 2020 1.002502 GTGTAGCCTGACCAACCCC 60.003 63.158 0.00 0.00 0.00 4.95
1755 2021 2.228480 TGTAGCCTGACCAACCCCC 61.228 63.158 0.00 0.00 0.00 5.40
1770 2036 3.167414 CCCCCTTTCGAGGTTGGT 58.833 61.111 0.00 0.00 0.00 3.67
1771 2037 1.303317 CCCCCTTTCGAGGTTGGTG 60.303 63.158 0.00 0.00 0.00 4.17
1772 2038 1.303317 CCCCTTTCGAGGTTGGTGG 60.303 63.158 0.00 0.00 0.00 4.61
1773 2039 1.454539 CCCTTTCGAGGTTGGTGGT 59.545 57.895 0.00 0.00 0.00 4.16
1774 2040 0.889186 CCCTTTCGAGGTTGGTGGTG 60.889 60.000 0.00 0.00 0.00 4.17
1775 2041 0.107831 CCTTTCGAGGTTGGTGGTGA 59.892 55.000 0.00 0.00 0.00 4.02
1776 2042 1.226746 CTTTCGAGGTTGGTGGTGAC 58.773 55.000 0.00 0.00 0.00 3.67
1777 2043 0.531090 TTTCGAGGTTGGTGGTGACG 60.531 55.000 0.00 0.00 0.00 4.35
1778 2044 2.357034 CGAGGTTGGTGGTGACGG 60.357 66.667 0.00 0.00 0.00 4.79
1779 2045 2.863346 CGAGGTTGGTGGTGACGGA 61.863 63.158 0.00 0.00 0.00 4.69
1780 2046 1.677552 GAGGTTGGTGGTGACGGAT 59.322 57.895 0.00 0.00 0.00 4.18
1781 2047 0.036306 GAGGTTGGTGGTGACGGATT 59.964 55.000 0.00 0.00 0.00 3.01
1782 2048 0.250727 AGGTTGGTGGTGACGGATTG 60.251 55.000 0.00 0.00 0.00 2.67
1783 2049 0.536460 GGTTGGTGGTGACGGATTGT 60.536 55.000 0.00 0.00 0.00 2.71
1784 2050 0.591170 GTTGGTGGTGACGGATTGTG 59.409 55.000 0.00 0.00 0.00 3.33
1785 2051 1.169661 TTGGTGGTGACGGATTGTGC 61.170 55.000 0.00 0.00 0.00 4.57
1786 2052 1.302511 GGTGGTGACGGATTGTGCT 60.303 57.895 0.00 0.00 0.00 4.40
1787 2053 0.889186 GGTGGTGACGGATTGTGCTT 60.889 55.000 0.00 0.00 0.00 3.91
1788 2054 0.238289 GTGGTGACGGATTGTGCTTG 59.762 55.000 0.00 0.00 0.00 4.01
1789 2055 0.179032 TGGTGACGGATTGTGCTTGT 60.179 50.000 0.00 0.00 0.00 3.16
1790 2056 0.951558 GGTGACGGATTGTGCTTGTT 59.048 50.000 0.00 0.00 0.00 2.83
1791 2057 1.336755 GGTGACGGATTGTGCTTGTTT 59.663 47.619 0.00 0.00 0.00 2.83
1792 2058 2.384382 GTGACGGATTGTGCTTGTTTG 58.616 47.619 0.00 0.00 0.00 2.93
1793 2059 2.032799 GTGACGGATTGTGCTTGTTTGA 59.967 45.455 0.00 0.00 0.00 2.69
1794 2060 2.685388 TGACGGATTGTGCTTGTTTGAA 59.315 40.909 0.00 0.00 0.00 2.69
1795 2061 3.042887 GACGGATTGTGCTTGTTTGAAC 58.957 45.455 0.00 0.00 0.00 3.18
1796 2062 2.425312 ACGGATTGTGCTTGTTTGAACA 59.575 40.909 0.00 0.00 37.08 3.18
1797 2063 3.068024 ACGGATTGTGCTTGTTTGAACAT 59.932 39.130 0.00 0.00 38.95 2.71
1798 2064 4.277174 ACGGATTGTGCTTGTTTGAACATA 59.723 37.500 0.00 0.00 38.95 2.29
1799 2065 4.616802 CGGATTGTGCTTGTTTGAACATAC 59.383 41.667 0.00 0.00 38.95 2.39
1800 2066 5.562696 CGGATTGTGCTTGTTTGAACATACT 60.563 40.000 0.00 0.00 38.95 2.12
1801 2067 5.630680 GGATTGTGCTTGTTTGAACATACTG 59.369 40.000 0.00 0.00 38.95 2.74
1802 2068 3.963665 TGTGCTTGTTTGAACATACTGC 58.036 40.909 0.00 2.10 38.95 4.40
1803 2069 3.243367 TGTGCTTGTTTGAACATACTGCC 60.243 43.478 0.00 0.00 38.95 4.85
1804 2070 3.004734 GTGCTTGTTTGAACATACTGCCT 59.995 43.478 0.00 0.00 38.95 4.75
1805 2071 3.636300 TGCTTGTTTGAACATACTGCCTT 59.364 39.130 0.00 0.00 38.95 4.35
1806 2072 4.824537 TGCTTGTTTGAACATACTGCCTTA 59.175 37.500 0.00 0.00 38.95 2.69
1807 2073 5.476599 TGCTTGTTTGAACATACTGCCTTAT 59.523 36.000 0.00 0.00 38.95 1.73
1816 2240 6.828273 TGAACATACTGCCTTATATTGCAACT 59.172 34.615 0.00 0.00 36.98 3.16
1891 2318 0.879765 AGTTGCAATCTGCTGCTGTC 59.120 50.000 0.59 0.00 45.31 3.51
1894 2321 1.730501 TGCAATCTGCTGCTGTCTAC 58.269 50.000 0.00 0.00 45.31 2.59
1895 2322 1.277273 TGCAATCTGCTGCTGTCTACT 59.723 47.619 0.00 0.00 45.31 2.57
1896 2323 2.497273 TGCAATCTGCTGCTGTCTACTA 59.503 45.455 0.00 0.00 45.31 1.82
1897 2324 3.122297 GCAATCTGCTGCTGTCTACTAG 58.878 50.000 0.00 0.00 40.96 2.57
1898 2325 3.430098 GCAATCTGCTGCTGTCTACTAGT 60.430 47.826 0.00 0.00 40.96 2.57
1899 2326 4.202060 GCAATCTGCTGCTGTCTACTAGTA 60.202 45.833 1.89 1.89 40.96 1.82
1907 2334 5.410439 GCTGCTGTCTACTAGTAGATCCTAC 59.590 48.000 30.33 19.83 43.32 3.18
1914 2341 8.533657 TGTCTACTAGTAGATCCTACTAGATGC 58.466 40.741 31.75 22.18 46.01 3.91
1935 2367 3.747010 GCTATCTCTGATGCCTTGATGTG 59.253 47.826 0.00 0.00 0.00 3.21
1939 2371 2.676839 CTCTGATGCCTTGATGTGTCAC 59.323 50.000 0.00 0.00 33.11 3.67
1963 2395 8.162880 CACGATTCTGTTCTGTAATACTTTCAC 58.837 37.037 0.00 0.00 0.00 3.18
1964 2396 8.088981 ACGATTCTGTTCTGTAATACTTTCACT 58.911 33.333 0.00 0.00 0.00 3.41
1965 2397 9.569167 CGATTCTGTTCTGTAATACTTTCACTA 57.431 33.333 0.00 0.00 0.00 2.74
2060 2505 2.169769 CCTCCCGATAGCCACAACTTTA 59.830 50.000 0.00 0.00 0.00 1.85
2094 2539 8.761497 CAGAAACGTTCTCTGAATTTAAGTGTA 58.239 33.333 24.17 0.00 42.51 2.90
2134 2581 8.494016 ACTAATCTGTGTTATAAAACTCTGCC 57.506 34.615 7.31 0.00 36.51 4.85
2135 2582 8.100791 ACTAATCTGTGTTATAAAACTCTGCCA 58.899 33.333 7.31 0.00 36.51 4.92
2178 2625 3.192422 TCAAATGGTTACAGAATTGCCCG 59.808 43.478 0.00 0.00 0.00 6.13
2191 2964 1.164411 TTGCCCGTTGCTCAACATAG 58.836 50.000 12.54 2.37 41.20 2.23
2215 3049 2.939103 GCTGGCTAACTTACTGACATGG 59.061 50.000 0.00 0.00 0.00 3.66
2225 3059 7.839680 AACTTACTGACATGGGAAGAAAAAT 57.160 32.000 0.00 0.00 0.00 1.82
2227 3061 8.934023 ACTTACTGACATGGGAAGAAAAATAA 57.066 30.769 0.00 0.00 0.00 1.40
2228 3062 9.533831 ACTTACTGACATGGGAAGAAAAATAAT 57.466 29.630 0.00 0.00 0.00 1.28
2255 5046 5.818136 TCCTACAATCATTTTGTGCTAGC 57.182 39.130 8.10 8.10 34.11 3.42
2281 5072 2.672874 TGTCAGCTGCTATTTTGCTACG 59.327 45.455 9.47 0.00 35.05 3.51
2298 5090 1.905637 ACGGGGACATGTTTTTCTCC 58.094 50.000 0.00 0.00 0.00 3.71
2307 5099 6.209361 GGACATGTTTTTCTCCTGTTTTCTC 58.791 40.000 0.00 0.00 0.00 2.87
2310 5102 6.381133 ACATGTTTTTCTCCTGTTTTCTCCTT 59.619 34.615 0.00 0.00 0.00 3.36
2314 5106 7.602265 TGTTTTTCTCCTGTTTTCTCCTTTTTG 59.398 33.333 0.00 0.00 0.00 2.44
2316 5108 7.660030 TTTCTCCTGTTTTCTCCTTTTTGAT 57.340 32.000 0.00 0.00 0.00 2.57
2318 5110 6.364701 TCTCCTGTTTTCTCCTTTTTGATGA 58.635 36.000 0.00 0.00 0.00 2.92
2319 5111 6.263168 TCTCCTGTTTTCTCCTTTTTGATGAC 59.737 38.462 0.00 0.00 0.00 3.06
2326 5118 2.807967 CTCCTTTTTGATGACGAGTGCA 59.192 45.455 0.00 0.00 0.00 4.57
2329 5121 3.291585 CTTTTTGATGACGAGTGCACAC 58.708 45.455 21.04 12.49 0.00 3.82
2331 5123 1.556591 TTGATGACGAGTGCACACGC 61.557 55.000 31.95 24.48 36.20 5.34
2332 5124 2.730672 GATGACGAGTGCACACGCC 61.731 63.158 31.95 24.09 37.32 5.68
2370 5162 8.659491 GGCTAACATTTGAATTTCAATCCTTTC 58.341 33.333 12.39 1.29 36.11 2.62
2374 5166 8.036273 ACATTTGAATTTCAATCCTTTCATGC 57.964 30.769 12.39 0.00 36.11 4.06
2387 5179 7.624360 ATCCTTTCATGCGTTATCTTAACAA 57.376 32.000 0.00 0.00 0.00 2.83
2412 6140 6.054860 TGAACTTTTTCATTTCCCCACAAA 57.945 33.333 0.00 0.00 36.79 2.83
2413 6141 6.112058 TGAACTTTTTCATTTCCCCACAAAG 58.888 36.000 0.00 0.00 36.79 2.77
2423 6151 3.897141 TCCCCACAAAGGAAAAACAAC 57.103 42.857 0.00 0.00 41.22 3.32
2489 6217 9.139174 GTGAAACTAACATTGTTTTGGATATGG 57.861 33.333 7.45 0.00 37.70 2.74
2495 6223 6.949352 ACATTGTTTTGGATATGGCTCTAG 57.051 37.500 0.00 0.00 0.00 2.43
2496 6224 5.300286 ACATTGTTTTGGATATGGCTCTAGC 59.700 40.000 0.00 0.00 41.14 3.42
2508 6236 0.536460 GCTCTAGCCGCTCTACTCCT 60.536 60.000 0.00 0.00 34.31 3.69
2509 6237 1.975660 CTCTAGCCGCTCTACTCCTT 58.024 55.000 0.00 0.00 0.00 3.36
2511 6239 2.292292 CTCTAGCCGCTCTACTCCTTTC 59.708 54.545 0.00 0.00 0.00 2.62
2513 6241 1.227002 GCCGCTCTACTCCTTTCGG 60.227 63.158 0.00 0.00 39.81 4.30
2514 6242 1.946475 GCCGCTCTACTCCTTTCGGT 61.946 60.000 0.00 0.00 39.11 4.69
2516 6244 0.100861 CGCTCTACTCCTTTCGGTCC 59.899 60.000 0.00 0.00 0.00 4.46
2518 6246 1.826096 GCTCTACTCCTTTCGGTCCTT 59.174 52.381 0.00 0.00 0.00 3.36
2519 6247 2.234168 GCTCTACTCCTTTCGGTCCTTT 59.766 50.000 0.00 0.00 0.00 3.11
2522 6250 5.568223 GCTCTACTCCTTTCGGTCCTTTTTA 60.568 44.000 0.00 0.00 0.00 1.52
2523 6251 5.787380 TCTACTCCTTTCGGTCCTTTTTAC 58.213 41.667 0.00 0.00 0.00 2.01
2524 6252 4.701651 ACTCCTTTCGGTCCTTTTTACT 57.298 40.909 0.00 0.00 0.00 2.24
2526 6254 4.347292 ACTCCTTTCGGTCCTTTTTACTCT 59.653 41.667 0.00 0.00 0.00 3.24
2527 6255 4.638304 TCCTTTCGGTCCTTTTTACTCTG 58.362 43.478 0.00 0.00 0.00 3.35
2528 6256 3.188667 CCTTTCGGTCCTTTTTACTCTGC 59.811 47.826 0.00 0.00 0.00 4.26
2529 6257 3.478857 TTCGGTCCTTTTTACTCTGCA 57.521 42.857 0.00 0.00 0.00 4.41
2532 6260 5.353394 TCGGTCCTTTTTACTCTGCATAT 57.647 39.130 0.00 0.00 0.00 1.78
2533 6261 6.474140 TCGGTCCTTTTTACTCTGCATATA 57.526 37.500 0.00 0.00 0.00 0.86
2535 6263 6.984474 TCGGTCCTTTTTACTCTGCATATAAG 59.016 38.462 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.507484 CTCCAAAGCAGTCATCAACCA 58.493 47.619 0.00 0.00 0.00 3.67
58 59 1.455849 CCACCCTCCAAAGCAGTCA 59.544 57.895 0.00 0.00 0.00 3.41
61 62 1.676967 GAGCCACCCTCCAAAGCAG 60.677 63.158 0.00 0.00 34.35 4.24
73 74 5.902681 ACTTTTCTAAAGGTTTTGAGCCAC 58.097 37.500 4.40 0.00 0.00 5.01
101 102 5.447624 AAACCCACCAGAACTAATTTTCG 57.552 39.130 0.00 0.00 0.00 3.46
102 103 8.117813 TGATAAACCCACCAGAACTAATTTTC 57.882 34.615 0.00 0.00 0.00 2.29
103 104 7.309805 GCTGATAAACCCACCAGAACTAATTTT 60.310 37.037 0.00 0.00 0.00 1.82
120 121 5.323371 TGCCCAAAACATAGCTGATAAAC 57.677 39.130 0.00 0.00 0.00 2.01
126 127 3.685756 CCAAATTGCCCAAAACATAGCTG 59.314 43.478 0.00 0.00 0.00 4.24
127 128 3.582208 TCCAAATTGCCCAAAACATAGCT 59.418 39.130 0.00 0.00 0.00 3.32
225 226 2.550830 AATAGACCACGCCATGATCC 57.449 50.000 0.00 0.00 0.00 3.36
252 253 5.653330 AGTTCCTTTTTGTTTCGGTCCTTTA 59.347 36.000 0.00 0.00 0.00 1.85
298 299 2.662700 ACTTCACTTGCTACTCGTTCG 58.337 47.619 0.00 0.00 0.00 3.95
308 309 3.304057 GCAGACCTGTAAACTTCACTTGC 60.304 47.826 0.00 0.00 0.00 4.01
434 435 2.157738 AGACATCCAGAGCAAAAGCAC 58.842 47.619 0.00 0.00 0.00 4.40
479 480 3.173668 ACGACACACAAACTAAGAGCA 57.826 42.857 0.00 0.00 0.00 4.26
510 511 1.468520 CACCCGCAATAAGAACCACAG 59.531 52.381 0.00 0.00 0.00 3.66
514 515 1.816074 TGTCACCCGCAATAAGAACC 58.184 50.000 0.00 0.00 0.00 3.62
518 519 4.082245 AGGAAAAATGTCACCCGCAATAAG 60.082 41.667 0.00 0.00 0.00 1.73
521 522 2.247358 AGGAAAAATGTCACCCGCAAT 58.753 42.857 0.00 0.00 0.00 3.56
525 526 3.190535 CCAACTAGGAAAAATGTCACCCG 59.809 47.826 0.00 0.00 41.22 5.28
532 533 4.447389 CGCAAAACCCAACTAGGAAAAATG 59.553 41.667 0.00 0.00 41.22 2.32
537 538 0.955905 GCGCAAAACCCAACTAGGAA 59.044 50.000 0.30 0.00 41.22 3.36
579 582 5.875359 CCCAAAAGCTACTAGAACTACCTTG 59.125 44.000 0.00 0.00 0.00 3.61
580 583 5.571047 GCCCAAAAGCTACTAGAACTACCTT 60.571 44.000 0.00 0.00 0.00 3.50
652 657 2.391678 CCCTCCAATTTCCATTCAGGG 58.608 52.381 0.00 0.00 34.92 4.45
653 658 2.391678 CCCCTCCAATTTCCATTCAGG 58.608 52.381 0.00 0.00 39.47 3.86
656 661 2.846665 TCCCCCTCCAATTTCCATTC 57.153 50.000 0.00 0.00 0.00 2.67
698 703 7.681939 ACATGTAACACGATCATACCTTTTT 57.318 32.000 0.00 0.00 0.00 1.94
699 704 8.780846 TTACATGTAACACGATCATACCTTTT 57.219 30.769 14.35 0.00 0.00 2.27
706 711 8.559536 GGATGAAATTACATGTAACACGATCAT 58.440 33.333 20.26 20.86 0.00 2.45
738 824 2.792674 CGTTCGAAACTTGAGTACAGCA 59.207 45.455 0.00 0.00 0.00 4.41
740 826 3.635331 TCCGTTCGAAACTTGAGTACAG 58.365 45.455 0.00 0.00 0.00 2.74
762 848 3.464545 GCGTTCGTTCGTCCGTCC 61.465 66.667 4.37 0.00 0.00 4.79
763 849 2.726912 TGCGTTCGTTCGTCCGTC 60.727 61.111 4.37 2.99 0.00 4.79
764 850 3.026311 GTGCGTTCGTTCGTCCGT 61.026 61.111 4.37 0.00 0.00 4.69
765 851 4.099585 CGTGCGTTCGTTCGTCCG 62.100 66.667 4.37 0.00 0.00 4.79
766 852 2.194591 CTTCGTGCGTTCGTTCGTCC 62.195 60.000 9.57 0.00 0.00 4.79
769 855 2.464189 CCTTCGTGCGTTCGTTCG 59.536 61.111 1.99 0.30 0.00 3.95
803 890 4.142403 CGGCAGCTCAGATTTTGGATTTTA 60.142 41.667 0.00 0.00 0.00 1.52
902 1000 4.096003 AGCACGGGATTGGACGGG 62.096 66.667 0.00 0.00 36.40 5.28
919 1017 2.046023 CAGCCTGCCGTTGGATCA 60.046 61.111 0.00 0.00 0.00 2.92
974 1088 2.276740 GGCTGGTGGGAGGATTGG 59.723 66.667 0.00 0.00 0.00 3.16
1338 1482 2.879907 CCGCCGAAACCGTAGAGA 59.120 61.111 0.00 0.00 0.00 3.10
1456 1656 4.705991 GCCTTCTACTAACTACACAGACCT 59.294 45.833 0.00 0.00 0.00 3.85
1473 1681 2.437281 ACATTCAGATCCATCGCCTTCT 59.563 45.455 0.00 0.00 0.00 2.85
1496 1705 2.023673 TGCAAGAACCAACAACTCCAG 58.976 47.619 0.00 0.00 0.00 3.86
1561 1813 3.780294 ACAAGCCAGGAGGTACAATCATA 59.220 43.478 0.00 0.00 37.19 2.15
1562 1814 2.578021 ACAAGCCAGGAGGTACAATCAT 59.422 45.455 0.00 0.00 37.19 2.45
1563 1815 1.985159 ACAAGCCAGGAGGTACAATCA 59.015 47.619 0.00 0.00 37.19 2.57
1564 1816 2.789409 ACAAGCCAGGAGGTACAATC 57.211 50.000 0.00 0.00 37.19 2.67
1565 1817 2.290960 GGAACAAGCCAGGAGGTACAAT 60.291 50.000 0.00 0.00 37.19 2.71
1566 1818 1.073284 GGAACAAGCCAGGAGGTACAA 59.927 52.381 0.00 0.00 37.19 2.41
1567 1819 0.690762 GGAACAAGCCAGGAGGTACA 59.309 55.000 0.00 0.00 37.19 2.90
1684 1950 2.514902 CCGCGTGGTATGAATTTTGTG 58.485 47.619 6.91 0.00 0.00 3.33
1723 1989 3.505680 CAGGCTACACTGCATAACCAAAA 59.494 43.478 0.00 0.00 34.04 2.44
1725 1991 2.304470 TCAGGCTACACTGCATAACCAA 59.696 45.455 0.00 0.00 38.36 3.67
1726 1992 1.905894 TCAGGCTACACTGCATAACCA 59.094 47.619 0.00 0.00 38.36 3.67
1727 1993 2.280628 GTCAGGCTACACTGCATAACC 58.719 52.381 0.00 0.00 38.36 2.85
1728 1994 2.280628 GGTCAGGCTACACTGCATAAC 58.719 52.381 0.00 0.00 38.36 1.89
1729 1995 1.905894 TGGTCAGGCTACACTGCATAA 59.094 47.619 0.00 0.00 38.36 1.90
1730 1996 1.567357 TGGTCAGGCTACACTGCATA 58.433 50.000 0.00 0.00 38.36 3.14
1731 1997 0.692476 TTGGTCAGGCTACACTGCAT 59.308 50.000 0.00 0.00 38.36 3.96
1734 2000 0.321653 GGGTTGGTCAGGCTACACTG 60.322 60.000 0.00 0.00 39.84 3.66
1735 2001 1.489560 GGGGTTGGTCAGGCTACACT 61.490 60.000 0.00 0.00 0.00 3.55
1737 2003 2.228480 GGGGGTTGGTCAGGCTACA 61.228 63.158 0.00 0.00 0.00 2.74
1757 2023 1.226746 GTCACCACCAACCTCGAAAG 58.773 55.000 0.00 0.00 0.00 2.62
1758 2024 0.531090 CGTCACCACCAACCTCGAAA 60.531 55.000 0.00 0.00 0.00 3.46
1759 2025 1.068417 CGTCACCACCAACCTCGAA 59.932 57.895 0.00 0.00 0.00 3.71
1760 2026 2.732016 CGTCACCACCAACCTCGA 59.268 61.111 0.00 0.00 0.00 4.04
1761 2027 2.167398 ATCCGTCACCACCAACCTCG 62.167 60.000 0.00 0.00 0.00 4.63
1762 2028 0.036306 AATCCGTCACCACCAACCTC 59.964 55.000 0.00 0.00 0.00 3.85
1763 2029 0.250727 CAATCCGTCACCACCAACCT 60.251 55.000 0.00 0.00 0.00 3.50
1764 2030 0.536460 ACAATCCGTCACCACCAACC 60.536 55.000 0.00 0.00 0.00 3.77
1765 2031 0.591170 CACAATCCGTCACCACCAAC 59.409 55.000 0.00 0.00 0.00 3.77
1766 2032 1.169661 GCACAATCCGTCACCACCAA 61.170 55.000 0.00 0.00 0.00 3.67
1767 2033 1.599518 GCACAATCCGTCACCACCA 60.600 57.895 0.00 0.00 0.00 4.17
1768 2034 0.889186 AAGCACAATCCGTCACCACC 60.889 55.000 0.00 0.00 0.00 4.61
1769 2035 0.238289 CAAGCACAATCCGTCACCAC 59.762 55.000 0.00 0.00 0.00 4.16
1770 2036 0.179032 ACAAGCACAATCCGTCACCA 60.179 50.000 0.00 0.00 0.00 4.17
1771 2037 0.951558 AACAAGCACAATCCGTCACC 59.048 50.000 0.00 0.00 0.00 4.02
1772 2038 2.032799 TCAAACAAGCACAATCCGTCAC 59.967 45.455 0.00 0.00 0.00 3.67
1773 2039 2.293170 TCAAACAAGCACAATCCGTCA 58.707 42.857 0.00 0.00 0.00 4.35
1774 2040 3.042887 GTTCAAACAAGCACAATCCGTC 58.957 45.455 0.00 0.00 0.00 4.79
1775 2041 2.425312 TGTTCAAACAAGCACAATCCGT 59.575 40.909 0.00 0.00 35.67 4.69
1776 2042 3.077229 TGTTCAAACAAGCACAATCCG 57.923 42.857 0.00 0.00 35.67 4.18
1777 2043 5.630680 CAGTATGTTCAAACAAGCACAATCC 59.369 40.000 0.00 0.00 43.03 3.01
1778 2044 5.117592 GCAGTATGTTCAAACAAGCACAATC 59.882 40.000 0.00 0.00 43.03 2.67
1779 2045 4.984161 GCAGTATGTTCAAACAAGCACAAT 59.016 37.500 0.00 0.00 43.03 2.71
1780 2046 4.358851 GCAGTATGTTCAAACAAGCACAA 58.641 39.130 0.00 0.00 43.03 3.33
1781 2047 3.243367 GGCAGTATGTTCAAACAAGCACA 60.243 43.478 0.00 0.00 43.03 4.57
1782 2048 3.004734 AGGCAGTATGTTCAAACAAGCAC 59.995 43.478 0.00 0.00 43.03 4.40
1783 2049 3.221771 AGGCAGTATGTTCAAACAAGCA 58.778 40.909 0.00 0.00 43.03 3.91
1784 2050 3.923017 AGGCAGTATGTTCAAACAAGC 57.077 42.857 0.00 2.75 43.03 4.01
1785 2051 9.507280 CAATATAAGGCAGTATGTTCAAACAAG 57.493 33.333 0.00 0.00 43.03 3.16
1786 2052 7.973388 GCAATATAAGGCAGTATGTTCAAACAA 59.027 33.333 0.00 0.00 43.03 2.83
1787 2053 7.121907 TGCAATATAAGGCAGTATGTTCAAACA 59.878 33.333 0.00 0.00 38.02 2.83
1788 2054 7.479980 TGCAATATAAGGCAGTATGTTCAAAC 58.520 34.615 0.00 0.00 39.31 2.93
1789 2055 7.637631 TGCAATATAAGGCAGTATGTTCAAA 57.362 32.000 0.00 0.00 39.31 2.69
1790 2056 7.339212 AGTTGCAATATAAGGCAGTATGTTCAA 59.661 33.333 0.59 0.00 41.68 2.69
1791 2057 6.828273 AGTTGCAATATAAGGCAGTATGTTCA 59.172 34.615 0.59 0.00 41.68 3.18
1792 2058 7.012327 TGAGTTGCAATATAAGGCAGTATGTTC 59.988 37.037 0.59 0.00 41.68 3.18
1793 2059 6.828273 TGAGTTGCAATATAAGGCAGTATGTT 59.172 34.615 0.59 0.00 41.68 2.71
1794 2060 6.260936 GTGAGTTGCAATATAAGGCAGTATGT 59.739 38.462 0.59 0.00 41.68 2.29
1795 2061 6.260714 TGTGAGTTGCAATATAAGGCAGTATG 59.739 38.462 0.59 0.00 41.68 2.39
1796 2062 6.356556 TGTGAGTTGCAATATAAGGCAGTAT 58.643 36.000 0.59 0.00 41.68 2.12
1797 2063 5.739959 TGTGAGTTGCAATATAAGGCAGTA 58.260 37.500 0.59 0.00 41.68 2.74
1798 2064 4.588899 TGTGAGTTGCAATATAAGGCAGT 58.411 39.130 0.59 0.00 41.68 4.40
1799 2065 5.565592 TTGTGAGTTGCAATATAAGGCAG 57.434 39.130 0.59 0.00 41.68 4.85
1800 2066 4.142403 GCTTGTGAGTTGCAATATAAGGCA 60.142 41.667 0.59 0.00 38.46 4.75
1801 2067 4.354587 GCTTGTGAGTTGCAATATAAGGC 58.645 43.478 0.59 0.00 0.00 4.35
1802 2068 4.591202 CGCTTGTGAGTTGCAATATAAGG 58.409 43.478 0.59 0.00 0.00 2.69
1803 2069 4.031028 GCGCTTGTGAGTTGCAATATAAG 58.969 43.478 0.59 7.78 0.00 1.73
1804 2070 3.689161 AGCGCTTGTGAGTTGCAATATAA 59.311 39.130 2.64 0.00 0.00 0.98
1805 2071 3.270027 AGCGCTTGTGAGTTGCAATATA 58.730 40.909 2.64 0.00 0.00 0.86
1806 2072 2.086869 AGCGCTTGTGAGTTGCAATAT 58.913 42.857 2.64 0.00 0.00 1.28
1807 2073 1.522668 AGCGCTTGTGAGTTGCAATA 58.477 45.000 2.64 0.00 0.00 1.90
1894 2321 9.982651 GAGATAGCATCTAGTAGGATCTACTAG 57.017 40.741 25.01 25.01 45.05 2.57
1895 2322 9.723760 AGAGATAGCATCTAGTAGGATCTACTA 57.276 37.037 12.51 12.51 40.38 1.82
1896 2323 8.486210 CAGAGATAGCATCTAGTAGGATCTACT 58.514 40.741 11.65 11.65 40.38 2.57
1897 2324 8.482943 TCAGAGATAGCATCTAGTAGGATCTAC 58.517 40.741 0.00 0.00 40.38 2.59
1898 2325 8.616799 TCAGAGATAGCATCTAGTAGGATCTA 57.383 38.462 0.00 0.00 40.38 1.98
1899 2326 7.509236 TCAGAGATAGCATCTAGTAGGATCT 57.491 40.000 0.00 0.00 40.38 2.75
1907 2334 5.185442 TCAAGGCATCAGAGATAGCATCTAG 59.815 44.000 0.00 0.00 40.38 2.43
1914 2341 4.958509 ACACATCAAGGCATCAGAGATAG 58.041 43.478 0.00 0.00 0.00 2.08
1935 2367 7.813852 AAGTATTACAGAACAGAATCGTGAC 57.186 36.000 0.00 0.00 0.00 3.67
1939 2371 8.467402 AGTGAAAGTATTACAGAACAGAATCG 57.533 34.615 0.00 0.00 0.00 3.34
1963 2395 0.388907 TTCCGACGCCCGAAAAGTAG 60.389 55.000 0.00 0.00 41.76 2.57
1964 2396 0.667184 GTTCCGACGCCCGAAAAGTA 60.667 55.000 0.00 0.00 41.76 2.24
1965 2397 1.957695 GTTCCGACGCCCGAAAAGT 60.958 57.895 0.00 0.00 41.76 2.66
1966 2398 2.858158 GTTCCGACGCCCGAAAAG 59.142 61.111 0.00 0.00 41.76 2.27
1987 2429 7.287235 TGAAGATCATGATCAGACACTGAGTAT 59.713 37.037 31.99 8.65 44.08 2.12
1992 2436 5.416947 TGTGAAGATCATGATCAGACACTG 58.583 41.667 33.09 0.00 40.22 3.66
2060 2505 3.997021 CAGAGAACGTTTCTGCATAACCT 59.003 43.478 20.00 3.69 40.87 3.50
2134 2581 6.680810 TGACTGAACTAAAATTCTGCCATTG 58.319 36.000 0.00 0.00 32.39 2.82
2135 2582 6.899393 TGACTGAACTAAAATTCTGCCATT 57.101 33.333 0.00 0.00 32.39 3.16
2178 2625 2.159462 GCCAGCTTCTATGTTGAGCAAC 60.159 50.000 6.41 6.41 41.50 4.17
2191 2964 3.926616 TGTCAGTAAGTTAGCCAGCTTC 58.073 45.455 0.00 0.00 0.00 3.86
2255 5046 3.671928 GCAAAATAGCAGCTGACAAAGTG 59.328 43.478 20.43 9.09 0.00 3.16
2281 5072 2.876581 ACAGGAGAAAAACATGTCCCC 58.123 47.619 0.00 0.00 0.00 4.81
2298 5090 6.060028 TCGTCATCAAAAAGGAGAAAACAG 57.940 37.500 0.00 0.00 0.00 3.16
2307 5099 2.290367 TGTGCACTCGTCATCAAAAAGG 59.710 45.455 19.41 0.00 0.00 3.11
2310 5102 1.260297 CGTGTGCACTCGTCATCAAAA 59.740 47.619 28.10 0.00 0.00 2.44
2314 5106 2.730672 GGCGTGTGCACTCGTCATC 61.731 63.158 33.39 20.45 45.35 2.92
2316 5108 2.916502 AAAGGCGTGTGCACTCGTCA 62.917 55.000 37.32 9.23 45.35 4.35
2318 5110 2.203015 AAAGGCGTGTGCACTCGT 60.203 55.556 33.62 18.29 45.35 4.18
2319 5111 1.568612 ATGAAAGGCGTGTGCACTCG 61.569 55.000 31.02 31.02 45.35 4.18
2326 5118 1.238439 CCAACTCATGAAAGGCGTGT 58.762 50.000 0.00 0.00 35.00 4.49
2331 5123 5.649782 AATGTTAGCCAACTCATGAAAGG 57.350 39.130 0.00 0.00 35.56 3.11
2332 5124 6.680810 TCAAATGTTAGCCAACTCATGAAAG 58.319 36.000 0.00 0.00 35.56 2.62
2370 5162 8.673626 AAGTTCATTTGTTAAGATAACGCATG 57.326 30.769 0.00 0.00 0.00 4.06
2406 5198 7.784633 ATATGTTGTTGTTTTTCCTTTGTGG 57.215 32.000 0.00 0.00 37.10 4.17
2417 6145 7.915397 GCCTCGATCAAATATATGTTGTTGTTT 59.085 33.333 0.00 0.00 0.00 2.83
2418 6146 7.066887 TGCCTCGATCAAATATATGTTGTTGTT 59.933 33.333 0.00 0.00 0.00 2.83
2422 6150 6.205464 CCTTGCCTCGATCAAATATATGTTGT 59.795 38.462 0.00 0.00 0.00 3.32
2423 6151 6.427853 TCCTTGCCTCGATCAAATATATGTTG 59.572 38.462 0.00 0.00 0.00 3.33
2462 6190 9.912634 CATATCCAAAACAATGTTAGTTTCACT 57.087 29.630 0.00 0.00 38.17 3.41
2463 6191 9.139174 CCATATCCAAAACAATGTTAGTTTCAC 57.861 33.333 0.00 0.00 38.17 3.18
2464 6192 7.816995 GCCATATCCAAAACAATGTTAGTTTCA 59.183 33.333 0.00 0.00 38.17 2.69
2465 6193 8.034804 AGCCATATCCAAAACAATGTTAGTTTC 58.965 33.333 0.00 0.00 38.17 2.78
2489 6217 0.536460 AGGAGTAGAGCGGCTAGAGC 60.536 60.000 0.60 0.00 41.14 4.09
2495 6223 4.403976 CGAAAGGAGTAGAGCGGC 57.596 61.111 0.00 0.00 0.00 6.53
2508 6236 3.811083 TGCAGAGTAAAAAGGACCGAAA 58.189 40.909 0.00 0.00 0.00 3.46
2509 6237 3.478857 TGCAGAGTAAAAAGGACCGAA 57.521 42.857 0.00 0.00 0.00 4.30
2511 6239 7.178712 CTTATATGCAGAGTAAAAAGGACCG 57.821 40.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.