Multiple sequence alignment - TraesCS6D01G061500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G061500 chr6D 100.000 5437 0 0 1 5437 28695593 28701029 0.000000e+00 10041.0
1 TraesCS6D01G061500 chr6D 84.750 400 34 13 2198 2589 458372948 458372568 5.140000e-100 375.0
2 TraesCS6D01G061500 chr6A 92.922 2529 117 27 982 3469 33957625 33955118 0.000000e+00 3622.0
3 TraesCS6D01G061500 chr6A 92.409 1752 95 20 3702 5436 33955122 33953392 0.000000e+00 2464.0
4 TraesCS6D01G061500 chr6A 82.303 356 36 12 656 1001 33958001 33957663 3.210000e-72 283.0
5 TraesCS6D01G061500 chr6A 82.988 241 27 9 105 345 33958831 33958605 7.140000e-49 206.0
6 TraesCS6D01G061500 chr6B 86.088 2523 200 72 112 2563 61498566 61496124 0.000000e+00 2575.0
7 TraesCS6D01G061500 chr6B 93.065 1687 70 16 3776 5436 61495183 61493518 0.000000e+00 2423.0
8 TraesCS6D01G061500 chr6B 92.175 869 57 4 2628 3490 61496112 61495249 0.000000e+00 1218.0
9 TraesCS6D01G061500 chr6B 87.371 776 72 17 1487 2247 35064250 35065014 0.000000e+00 867.0
10 TraesCS6D01G061500 chr6B 85.880 517 38 16 936 1438 35063746 35064241 8.070000e-143 518.0
11 TraesCS6D01G061500 chr3A 87.306 1095 105 24 1487 2563 94169086 94170164 0.000000e+00 1221.0
12 TraesCS6D01G061500 chr3A 90.601 649 44 9 4561 5198 94173241 94173883 0.000000e+00 845.0
13 TraesCS6D01G061500 chr3A 90.844 557 37 7 3776 4332 94172429 94172971 0.000000e+00 734.0
14 TraesCS6D01G061500 chr3A 93.970 398 21 2 3093 3490 94171969 94172363 2.800000e-167 599.0
15 TraesCS6D01G061500 chr3A 89.301 458 36 6 2624 3075 94170172 94170622 3.680000e-156 562.0
16 TraesCS6D01G061500 chr3A 82.016 367 44 10 1011 1366 94163113 94163468 5.330000e-75 292.0
17 TraesCS6D01G061500 chr3A 95.062 81 4 0 1358 1438 94168997 94169077 1.590000e-25 128.0
18 TraesCS6D01G061500 chr5D 87.215 1095 107 22 1487 2563 539739963 539741042 0.000000e+00 1216.0
19 TraesCS6D01G061500 chr5D 91.753 873 58 7 2624 3490 539741050 539741914 0.000000e+00 1201.0
20 TraesCS6D01G061500 chr5D 90.639 673 48 9 4536 5198 539742825 539743492 0.000000e+00 880.0
21 TraesCS6D01G061500 chr5D 91.513 542 33 4 3776 4317 539741980 539742508 0.000000e+00 734.0
22 TraesCS6D01G061500 chr5D 84.807 441 41 12 1011 1438 539739527 539739954 2.340000e-113 420.0
23 TraesCS6D01G061500 chr5D 81.915 94 3 5 884 976 539739447 539739527 3.510000e-07 67.6
24 TraesCS6D01G061500 chr3B 86.588 1096 111 23 1487 2563 735000268 735001346 0.000000e+00 1177.0
25 TraesCS6D01G061500 chr3B 91.190 874 60 8 2624 3490 735001354 735002217 0.000000e+00 1171.0
26 TraesCS6D01G061500 chr3B 89.701 670 55 8 4539 5198 735003114 735003779 0.000000e+00 843.0
27 TraesCS6D01G061500 chr3B 90.485 557 41 3 3776 4332 735002283 735002827 0.000000e+00 725.0
28 TraesCS6D01G061500 chr3B 90.652 353 22 6 4854 5198 735004250 735004599 4.960000e-125 459.0
29 TraesCS6D01G061500 chr3B 84.807 441 41 12 1011 1438 734999832 735000259 2.340000e-113 420.0
30 TraesCS6D01G061500 chr1A 86.096 1086 119 20 1495 2563 17878128 17879198 0.000000e+00 1140.0
31 TraesCS6D01G061500 chr1A 90.089 676 52 8 4532 5198 17884554 17885223 0.000000e+00 863.0
32 TraesCS6D01G061500 chr1A 93.290 462 28 2 3029 3490 17883475 17883933 0.000000e+00 678.0
33 TraesCS6D01G061500 chr1A 88.330 557 47 7 3776 4332 17883999 17884537 0.000000e+00 652.0
34 TraesCS6D01G061500 chr1A 87.470 415 39 6 2631 3039 17879213 17879620 2.970000e-127 466.0
35 TraesCS6D01G061500 chr1A 83.834 433 48 11 1011 1438 17877695 17878110 5.110000e-105 392.0
36 TraesCS6D01G061500 chr1A 94.118 51 2 1 884 934 17877615 17877664 5.840000e-10 76.8
37 TraesCS6D01G061500 chr2B 87.113 776 75 17 1487 2247 738172075 738171310 0.000000e+00 856.0
38 TraesCS6D01G061500 chr2B 85.880 517 38 16 936 1438 738172579 738172084 8.070000e-143 518.0
39 TraesCS6D01G061500 chr2D 88.612 641 57 6 4805 5437 248776459 248777091 0.000000e+00 765.0
40 TraesCS6D01G061500 chr2D 85.987 628 77 7 2860 3485 248740917 248741535 0.000000e+00 662.0
41 TraesCS6D01G061500 chr2D 85.061 656 84 4 3734 4388 248759978 248760620 0.000000e+00 656.0
42 TraesCS6D01G061500 chr2A 87.500 640 57 14 4805 5437 288987282 288987905 0.000000e+00 717.0
43 TraesCS6D01G061500 chr2A 83.994 656 90 6 3734 4388 288982920 288983561 2.780000e-172 616.0
44 TraesCS6D01G061500 chr2A 83.607 610 86 10 2738 3343 288960621 288961220 1.320000e-155 560.0
45 TraesCS6D01G061500 chr2A 82.915 398 51 10 4420 4810 288983564 288983951 5.210000e-90 342.0
46 TraesCS6D01G061500 chr2A 91.111 135 10 2 3351 3485 288962879 288963011 1.200000e-41 182.0
47 TraesCS6D01G061500 chr5A 80.782 921 100 34 2122 3007 552876933 552876055 0.000000e+00 649.0
48 TraesCS6D01G061500 chrUn 85.880 517 38 16 936 1438 391731905 391732400 8.070000e-143 518.0
49 TraesCS6D01G061500 chr4D 84.750 400 34 13 2198 2589 440272502 440272882 5.140000e-100 375.0
50 TraesCS6D01G061500 chr7D 83.590 390 36 13 2057 2431 53728242 53727866 1.880000e-89 340.0
51 TraesCS6D01G061500 chr7A 79.920 249 20 14 2019 2239 139199044 139198798 7.290000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G061500 chr6D 28695593 28701029 5436 False 10041.000000 10041 100.000000 1 5437 1 chr6D.!!$F1 5436
1 TraesCS6D01G061500 chr6A 33953392 33958831 5439 True 1643.750000 3622 87.655500 105 5436 4 chr6A.!!$R1 5331
2 TraesCS6D01G061500 chr6B 61493518 61498566 5048 True 2072.000000 2575 90.442667 112 5436 3 chr6B.!!$R1 5324
3 TraesCS6D01G061500 chr6B 35063746 35065014 1268 False 692.500000 867 86.625500 936 2247 2 chr6B.!!$F1 1311
4 TraesCS6D01G061500 chr3A 94168997 94173883 4886 False 681.500000 1221 91.180667 1358 5198 6 chr3A.!!$F2 3840
5 TraesCS6D01G061500 chr5D 539739447 539743492 4045 False 753.100000 1216 87.973667 884 5198 6 chr5D.!!$F1 4314
6 TraesCS6D01G061500 chr3B 734999832 735004599 4767 False 799.166667 1177 88.903833 1011 5198 6 chr3B.!!$F1 4187
7 TraesCS6D01G061500 chr1A 17877615 17885223 7608 False 609.685714 1140 89.032429 884 5198 7 chr1A.!!$F1 4314
8 TraesCS6D01G061500 chr2B 738171310 738172579 1269 True 687.000000 856 86.496500 936 2247 2 chr2B.!!$R1 1311
9 TraesCS6D01G061500 chr2D 248776459 248777091 632 False 765.000000 765 88.612000 4805 5437 1 chr2D.!!$F3 632
10 TraesCS6D01G061500 chr2D 248740917 248741535 618 False 662.000000 662 85.987000 2860 3485 1 chr2D.!!$F1 625
11 TraesCS6D01G061500 chr2D 248759978 248760620 642 False 656.000000 656 85.061000 3734 4388 1 chr2D.!!$F2 654
12 TraesCS6D01G061500 chr2A 288982920 288987905 4985 False 558.333333 717 84.803000 3734 5437 3 chr2A.!!$F2 1703
13 TraesCS6D01G061500 chr2A 288960621 288963011 2390 False 371.000000 560 87.359000 2738 3485 2 chr2A.!!$F1 747
14 TraesCS6D01G061500 chr5A 552876055 552876933 878 True 649.000000 649 80.782000 2122 3007 1 chr5A.!!$R1 885

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.036164 TTTGCTACGTGGCCATGACT 59.964 50.000 31.74 12.70 0.00 3.41 F
34 35 0.036164 TTGCTACGTGGCCATGACTT 59.964 50.000 31.74 11.92 0.00 3.01 F
955 1472 0.037303 TCTTGGCAGGGAAGAAGCTG 59.963 55.000 0.00 0.00 0.00 4.24 F
1460 2105 1.476110 GCACATATTGGCGGGTCCTAA 60.476 52.381 0.00 0.00 35.26 2.69 F
1758 2422 1.001520 GCCATTAAAAAGGCCAACGGT 59.998 47.619 5.01 0.00 45.18 4.83 F
1863 2537 1.209127 CCGTTGCCGTGTCCATTTC 59.791 57.895 0.00 0.00 0.00 2.17 F
3680 11257 0.030638 CATTTTATCGCCCCTTGCCG 59.969 55.000 0.00 0.00 36.24 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 2217 0.033504 ACACTCATTTCAGGCGACGT 59.966 50.000 0.00 0.0 0.00 4.34 R
1724 2381 0.698238 AATGGCCTCTAACCTGCACA 59.302 50.000 3.32 0.0 0.00 4.57 R
1758 2422 1.343075 ACCTCCTCCGAGAAATGGCTA 60.343 52.381 0.00 0.0 38.52 3.93 R
3357 10934 1.217244 GTACGTGCCGGTGATCCTT 59.783 57.895 1.90 0.0 0.00 3.36 R
3672 11249 0.254747 TGTAGGATTTCCGGCAAGGG 59.745 55.000 0.00 0.0 42.08 3.95 R
3790 11367 0.790207 GTACACACCATGCGTCACAG 59.210 55.000 0.00 0.0 0.00 3.66 R
4497 12092 1.405872 ACACAGTGGAACGGTACAGA 58.594 50.000 5.31 0.0 45.56 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.804108 CCTATCATCTCCTCTTTGCTACG 58.196 47.826 0.00 0.00 0.00 3.51
23 24 4.279671 CCTATCATCTCCTCTTTGCTACGT 59.720 45.833 0.00 0.00 0.00 3.57
24 25 3.510388 TCATCTCCTCTTTGCTACGTG 57.490 47.619 0.00 0.00 0.00 4.49
25 26 2.166459 TCATCTCCTCTTTGCTACGTGG 59.834 50.000 0.00 0.00 0.00 4.94
26 27 0.246635 TCTCCTCTTTGCTACGTGGC 59.753 55.000 18.00 18.00 0.00 5.01
27 28 0.741221 CTCCTCTTTGCTACGTGGCC 60.741 60.000 21.89 0.00 0.00 5.36
28 29 1.003839 CCTCTTTGCTACGTGGCCA 60.004 57.895 21.89 7.65 0.00 5.36
29 30 0.392998 CCTCTTTGCTACGTGGCCAT 60.393 55.000 21.89 0.00 0.00 4.40
30 31 0.729116 CTCTTTGCTACGTGGCCATG 59.271 55.000 23.83 23.83 0.00 3.66
31 32 0.323302 TCTTTGCTACGTGGCCATGA 59.677 50.000 31.74 14.78 0.00 3.07
32 33 0.447801 CTTTGCTACGTGGCCATGAC 59.552 55.000 31.74 19.15 0.00 3.06
33 34 0.036164 TTTGCTACGTGGCCATGACT 59.964 50.000 31.74 12.70 0.00 3.41
34 35 0.036164 TTGCTACGTGGCCATGACTT 59.964 50.000 31.74 11.92 0.00 3.01
35 36 0.673333 TGCTACGTGGCCATGACTTG 60.673 55.000 31.74 17.14 0.00 3.16
36 37 0.673644 GCTACGTGGCCATGACTTGT 60.674 55.000 31.74 11.13 0.00 3.16
37 38 1.078709 CTACGTGGCCATGACTTGTG 58.921 55.000 31.74 10.01 0.00 3.33
38 39 0.321210 TACGTGGCCATGACTTGTGG 60.321 55.000 31.74 4.27 39.80 4.17
39 40 2.334946 CGTGGCCATGACTTGTGGG 61.335 63.158 21.08 0.00 37.22 4.61
42 43 2.283101 GCCATGACTTGTGGGCCA 60.283 61.111 0.00 0.00 40.55 5.36
43 44 2.639327 GCCATGACTTGTGGGCCAC 61.639 63.158 29.75 29.75 40.55 5.01
44 45 2.334946 CCATGACTTGTGGGCCACG 61.335 63.158 30.14 19.79 37.14 4.94
45 46 2.034066 ATGACTTGTGGGCCACGG 59.966 61.111 30.14 25.75 37.14 4.94
46 47 4.947147 TGACTTGTGGGCCACGGC 62.947 66.667 30.14 20.25 37.14 5.68
47 48 4.643387 GACTTGTGGGCCACGGCT 62.643 66.667 30.14 15.27 41.60 5.52
48 49 3.246112 ACTTGTGGGCCACGGCTA 61.246 61.111 30.14 11.38 41.60 3.93
49 50 2.272146 CTTGTGGGCCACGGCTAT 59.728 61.111 30.14 0.00 41.60 2.97
50 51 1.819632 CTTGTGGGCCACGGCTATC 60.820 63.158 30.14 6.64 41.60 2.08
51 52 2.535485 CTTGTGGGCCACGGCTATCA 62.535 60.000 30.14 9.47 41.60 2.15
52 53 2.203070 GTGGGCCACGGCTATCAG 60.203 66.667 22.83 0.00 41.60 2.90
53 54 2.364973 TGGGCCACGGCTATCAGA 60.365 61.111 0.00 0.00 41.60 3.27
54 55 1.992834 TGGGCCACGGCTATCAGAA 60.993 57.895 0.00 0.00 41.60 3.02
55 56 1.223487 GGGCCACGGCTATCAGAAA 59.777 57.895 4.39 0.00 41.60 2.52
56 57 0.393808 GGGCCACGGCTATCAGAAAA 60.394 55.000 4.39 0.00 41.60 2.29
57 58 1.680338 GGCCACGGCTATCAGAAAAT 58.320 50.000 8.20 0.00 41.60 1.82
58 59 1.334869 GGCCACGGCTATCAGAAAATG 59.665 52.381 8.20 0.00 41.60 2.32
59 60 1.334869 GCCACGGCTATCAGAAAATGG 59.665 52.381 0.00 0.00 38.26 3.16
60 61 2.643551 CCACGGCTATCAGAAAATGGT 58.356 47.619 0.00 0.00 0.00 3.55
61 62 3.016736 CCACGGCTATCAGAAAATGGTT 58.983 45.455 0.00 0.00 0.00 3.67
62 63 3.065371 CCACGGCTATCAGAAAATGGTTC 59.935 47.826 0.00 0.00 0.00 3.62
63 64 3.689161 CACGGCTATCAGAAAATGGTTCA 59.311 43.478 0.00 0.00 0.00 3.18
64 65 4.155826 CACGGCTATCAGAAAATGGTTCAA 59.844 41.667 0.00 0.00 0.00 2.69
65 66 4.764823 ACGGCTATCAGAAAATGGTTCAAA 59.235 37.500 0.00 0.00 0.00 2.69
66 67 5.418840 ACGGCTATCAGAAAATGGTTCAAAT 59.581 36.000 0.00 0.00 0.00 2.32
67 68 6.071391 ACGGCTATCAGAAAATGGTTCAAATT 60.071 34.615 0.00 0.00 0.00 1.82
68 69 6.813152 CGGCTATCAGAAAATGGTTCAAATTT 59.187 34.615 0.00 0.00 0.00 1.82
69 70 7.973388 CGGCTATCAGAAAATGGTTCAAATTTA 59.027 33.333 0.00 0.00 0.00 1.40
70 71 9.651913 GGCTATCAGAAAATGGTTCAAATTTAA 57.348 29.630 0.00 0.00 0.00 1.52
81 82 6.838198 GGTTCAAATTTAACCAAACCAGTC 57.162 37.500 17.55 0.00 44.83 3.51
82 83 6.342111 GGTTCAAATTTAACCAAACCAGTCA 58.658 36.000 17.55 0.00 44.83 3.41
83 84 6.989759 GGTTCAAATTTAACCAAACCAGTCAT 59.010 34.615 17.55 0.00 44.83 3.06
84 85 7.170828 GGTTCAAATTTAACCAAACCAGTCATC 59.829 37.037 17.55 0.00 44.83 2.92
85 86 6.442952 TCAAATTTAACCAAACCAGTCATCG 58.557 36.000 0.00 0.00 0.00 3.84
86 87 5.385509 AATTTAACCAAACCAGTCATCGG 57.614 39.130 0.00 0.00 0.00 4.18
87 88 3.495434 TTAACCAAACCAGTCATCGGT 57.505 42.857 0.00 0.00 38.85 4.69
88 89 1.604604 AACCAAACCAGTCATCGGTG 58.395 50.000 0.00 0.00 36.67 4.94
89 90 0.472471 ACCAAACCAGTCATCGGTGT 59.528 50.000 0.00 0.00 36.67 4.16
90 91 1.133915 ACCAAACCAGTCATCGGTGTT 60.134 47.619 0.00 0.00 36.67 3.32
91 92 1.953686 CCAAACCAGTCATCGGTGTTT 59.046 47.619 0.00 0.00 36.67 2.83
92 93 2.360801 CCAAACCAGTCATCGGTGTTTT 59.639 45.455 0.00 0.00 36.67 2.43
93 94 3.550030 CCAAACCAGTCATCGGTGTTTTC 60.550 47.826 0.00 0.00 36.67 2.29
94 95 2.930826 ACCAGTCATCGGTGTTTTCT 57.069 45.000 0.00 0.00 34.69 2.52
95 96 2.494059 ACCAGTCATCGGTGTTTTCTG 58.506 47.619 0.00 1.17 34.69 3.02
96 97 1.197721 CCAGTCATCGGTGTTTTCTGC 59.802 52.381 0.00 0.00 0.00 4.26
97 98 1.872952 CAGTCATCGGTGTTTTCTGCA 59.127 47.619 0.00 0.00 0.00 4.41
98 99 2.290367 CAGTCATCGGTGTTTTCTGCAA 59.710 45.455 0.00 0.00 0.00 4.08
99 100 3.058016 CAGTCATCGGTGTTTTCTGCAAT 60.058 43.478 0.00 0.00 0.00 3.56
100 101 3.569701 AGTCATCGGTGTTTTCTGCAATT 59.430 39.130 0.00 0.00 0.00 2.32
101 102 4.037923 AGTCATCGGTGTTTTCTGCAATTT 59.962 37.500 0.00 0.00 0.00 1.82
102 103 4.744631 GTCATCGGTGTTTTCTGCAATTTT 59.255 37.500 0.00 0.00 0.00 1.82
103 104 5.234116 GTCATCGGTGTTTTCTGCAATTTTT 59.766 36.000 0.00 0.00 0.00 1.94
135 136 8.725405 TTATGCTATTTATTCGGTTTCTCACA 57.275 30.769 0.00 0.00 0.00 3.58
141 142 1.295792 TTCGGTTTCTCACACTGTGC 58.704 50.000 7.90 0.00 32.98 4.57
144 145 1.806247 CGGTTTCTCACACTGTGCTCA 60.806 52.381 7.90 0.00 32.98 4.26
145 146 1.869767 GGTTTCTCACACTGTGCTCAG 59.130 52.381 14.08 14.08 46.18 3.35
172 173 4.058124 GAGCAAATTTTGAACAACCCCTC 58.942 43.478 13.26 3.84 0.00 4.30
199 200 5.405873 TCAACAATCAAGTGACGCGTTATTA 59.594 36.000 15.53 0.00 0.00 0.98
205 206 4.746115 TCAAGTGACGCGTTATTACAAACT 59.254 37.500 15.53 4.69 0.00 2.66
206 207 5.919707 TCAAGTGACGCGTTATTACAAACTA 59.080 36.000 15.53 0.00 0.00 2.24
211 212 5.059587 TGACGCGTTATTACAAACTAGAACG 59.940 40.000 15.53 0.36 41.81 3.95
279 280 0.106769 TGGCACTCAAAAGAGCACCA 60.107 50.000 3.71 3.71 40.48 4.17
297 298 1.077357 ACAAAACCAGTGTCGCCCA 60.077 52.632 0.00 0.00 0.00 5.36
330 331 7.507672 CGTAGCCCAATAATAGACTTAATCG 57.492 40.000 0.00 0.00 0.00 3.34
331 332 6.034683 CGTAGCCCAATAATAGACTTAATCGC 59.965 42.308 0.00 0.00 0.00 4.58
388 393 6.006449 CCTGGACCATATCTTTCCCAATAAG 58.994 44.000 0.00 0.00 0.00 1.73
393 398 7.014326 GGACCATATCTTTCCCAATAAGAAACC 59.986 40.741 0.00 0.00 35.43 3.27
407 412 8.585018 CCAATAAGAAACCCTGTAATTTGTCTT 58.415 33.333 0.00 0.00 0.00 3.01
420 425 8.856153 TGTAATTTGTCTTCCACTGCTTTATA 57.144 30.769 0.00 0.00 0.00 0.98
462 467 4.148825 GGAGCTCCGCCATCACGT 62.149 66.667 19.06 0.00 0.00 4.49
466 471 1.067416 GCTCCGCCATCACGTATCA 59.933 57.895 0.00 0.00 0.00 2.15
523 528 2.162809 GACGGGGTTCGCATTAACAATT 59.837 45.455 0.00 0.00 43.89 2.32
524 529 2.559231 ACGGGGTTCGCATTAACAATTT 59.441 40.909 0.00 0.00 43.89 1.82
544 549 9.651913 ACAATTTTAGTCAAATCTCTCTCTCTC 57.348 33.333 0.00 0.00 33.60 3.20
545 550 9.874205 CAATTTTAGTCAAATCTCTCTCTCTCT 57.126 33.333 0.00 0.00 33.60 3.10
547 552 8.877864 TTTTAGTCAAATCTCTCTCTCTCTCT 57.122 34.615 0.00 0.00 0.00 3.10
548 553 8.506168 TTTAGTCAAATCTCTCTCTCTCTCTC 57.494 38.462 0.00 0.00 0.00 3.20
549 554 6.319048 AGTCAAATCTCTCTCTCTCTCTCT 57.681 41.667 0.00 0.00 0.00 3.10
550 555 6.352516 AGTCAAATCTCTCTCTCTCTCTCTC 58.647 44.000 0.00 0.00 0.00 3.20
551 556 6.157645 AGTCAAATCTCTCTCTCTCTCTCTCT 59.842 42.308 0.00 0.00 0.00 3.10
552 557 6.481644 GTCAAATCTCTCTCTCTCTCTCTCTC 59.518 46.154 0.00 0.00 0.00 3.20
553 558 6.385176 TCAAATCTCTCTCTCTCTCTCTCTCT 59.615 42.308 0.00 0.00 0.00 3.10
554 559 6.418057 AATCTCTCTCTCTCTCTCTCTCTC 57.582 45.833 0.00 0.00 0.00 3.20
555 560 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
556 561 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
557 562 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
558 563 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
559 564 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
569 574 5.012664 TCTCTCTCTCTCTCTACACACTGTT 59.987 44.000 0.00 0.00 0.00 3.16
610 616 1.684869 CCCACCACTCTCTCTCTCTCC 60.685 61.905 0.00 0.00 0.00 3.71
613 619 0.106217 CCACTCTCTCTCTCTCCCCC 60.106 65.000 0.00 0.00 0.00 5.40
684 1193 3.708210 CCTCCGTAACCAGAGGCA 58.292 61.111 0.00 0.00 43.11 4.75
685 1194 1.517832 CCTCCGTAACCAGAGGCAG 59.482 63.158 0.00 0.00 43.11 4.85
686 1195 0.970937 CCTCCGTAACCAGAGGCAGA 60.971 60.000 0.00 0.00 43.11 4.26
687 1196 0.457851 CTCCGTAACCAGAGGCAGAG 59.542 60.000 0.00 0.00 0.00 3.35
688 1197 0.251653 TCCGTAACCAGAGGCAGAGT 60.252 55.000 0.00 0.00 0.00 3.24
689 1198 0.108615 CCGTAACCAGAGGCAGAGTG 60.109 60.000 0.00 0.00 0.00 3.51
690 1199 0.737715 CGTAACCAGAGGCAGAGTGC 60.738 60.000 0.00 0.00 44.08 4.40
701 1210 1.860484 GCAGAGTGCACAGGCTTTCC 61.860 60.000 21.04 0.97 44.26 3.13
714 1225 6.180472 CACAGGCTTTCCCTCTCTAAAAATA 58.820 40.000 0.00 0.00 44.09 1.40
718 1229 7.066404 CAGGCTTTCCCTCTCTAAAAATAGAAC 59.934 40.741 0.00 0.00 44.09 3.01
719 1230 6.319152 GGCTTTCCCTCTCTAAAAATAGAACC 59.681 42.308 0.00 0.00 0.00 3.62
765 1277 4.083431 GGCCTTCTCATCAATTGATCATCG 60.083 45.833 18.16 7.50 32.72 3.84
788 1300 2.734276 GAGGTATCGATTCCTGGCTC 57.266 55.000 26.33 9.88 33.83 4.70
789 1301 1.273886 GAGGTATCGATTCCTGGCTCC 59.726 57.143 26.33 9.30 33.83 4.70
790 1302 0.321996 GGTATCGATTCCTGGCTCCC 59.678 60.000 13.42 0.00 0.00 4.30
791 1303 0.038159 GTATCGATTCCTGGCTCCCG 60.038 60.000 1.71 0.00 0.00 5.14
803 1315 4.899239 CTCCCGCCGTCCATCAGC 62.899 72.222 0.00 0.00 0.00 4.26
828 1340 4.347813 TGCTTCGGTTTTTCTTTTCTTCG 58.652 39.130 0.00 0.00 0.00 3.79
832 1344 4.912214 TCGGTTTTTCTTTTCTTCGTTCC 58.088 39.130 0.00 0.00 0.00 3.62
834 1346 4.733405 CGGTTTTTCTTTTCTTCGTTCCAG 59.267 41.667 0.00 0.00 0.00 3.86
852 1365 3.632604 TCCAGCTAGAATCGATTTCGTCT 59.367 43.478 12.81 7.33 39.46 4.18
880 1393 2.000447 GGTCCGTTGAAATCTTCTCCG 59.000 52.381 0.00 0.00 0.00 4.63
955 1472 0.037303 TCTTGGCAGGGAAGAAGCTG 59.963 55.000 0.00 0.00 0.00 4.24
1023 1613 2.158957 GGATCAATACGAGGTGCTGGAA 60.159 50.000 0.00 0.00 0.00 3.53
1099 1700 3.515602 AGAAGAGGTTGGTGCAATTCT 57.484 42.857 0.00 0.00 0.00 2.40
1105 1717 2.092323 GGTTGGTGCAATTCTACCCTC 58.908 52.381 0.00 0.13 36.10 4.30
1259 1877 3.187432 GTCTCGCTCTTTCTTCCCTTTTG 59.813 47.826 0.00 0.00 0.00 2.44
1260 1878 2.485814 CTCGCTCTTTCTTCCCTTTTGG 59.514 50.000 0.00 0.00 39.97 3.28
1329 1970 6.655848 ACCATTGGATGAAATTCACCATTTTG 59.344 34.615 10.37 12.70 35.02 2.44
1330 1971 6.655848 CCATTGGATGAAATTCACCATTTTGT 59.344 34.615 14.69 0.00 35.02 2.83
1331 1972 7.175293 CCATTGGATGAAATTCACCATTTTGTT 59.825 33.333 14.69 0.00 35.02 2.83
1332 1973 7.727331 TTGGATGAAATTCACCATTTTGTTC 57.273 32.000 14.69 0.03 35.02 3.18
1339 1980 8.138074 TGAAATTCACCATTTTGTTCGTTCATA 58.862 29.630 0.00 0.00 35.02 2.15
1442 2086 3.303938 CTCCCCTCTTCTCTTATCTGCA 58.696 50.000 0.00 0.00 0.00 4.41
1452 2096 4.309933 TCTCTTATCTGCACATATTGGCG 58.690 43.478 0.00 0.00 0.00 5.69
1460 2105 1.476110 GCACATATTGGCGGGTCCTAA 60.476 52.381 0.00 0.00 35.26 2.69
1526 2171 8.840321 TGTTCCTACTGAAAATTCTCTTTCAAG 58.160 33.333 0.93 0.00 43.03 3.02
1596 2251 4.536364 ATGAGTGTCTTTGTTGTTGTCG 57.464 40.909 0.00 0.00 0.00 4.35
1669 2326 2.497107 ATGTGTGCAACTTGTGAAGC 57.503 45.000 0.00 0.00 38.04 3.86
1694 2351 3.057245 GCTCTGAACTGAATTTGGAACCC 60.057 47.826 0.00 0.00 0.00 4.11
1700 2357 2.226330 CTGAATTTGGAACCCGTGACA 58.774 47.619 0.00 0.00 0.00 3.58
1710 2367 2.060050 ACCCGTGACAAAATTGTGGA 57.940 45.000 3.05 0.00 42.43 4.02
1712 2369 3.757270 ACCCGTGACAAAATTGTGGATA 58.243 40.909 3.05 0.00 42.43 2.59
1714 2371 4.770010 ACCCGTGACAAAATTGTGGATATT 59.230 37.500 3.05 0.00 42.43 1.28
1724 2381 8.217111 ACAAAATTGTGGATATTTGTTTTCCCT 58.783 29.630 0.00 0.00 41.75 4.20
1725 2382 8.505625 CAAAATTGTGGATATTTGTTTTCCCTG 58.494 33.333 0.00 0.00 0.00 4.45
1746 2410 3.245087 TGTGCAGGTTAGAGGCCATTAAA 60.245 43.478 5.01 0.00 0.00 1.52
1758 2422 1.001520 GCCATTAAAAAGGCCAACGGT 59.998 47.619 5.01 0.00 45.18 4.83
1863 2537 1.209127 CCGTTGCCGTGTCCATTTC 59.791 57.895 0.00 0.00 0.00 2.17
2442 3136 9.702494 CTATCTGATATTCAGTTGCATGTCTTA 57.298 33.333 4.56 0.00 44.58 2.10
2443 3137 8.969260 ATCTGATATTCAGTTGCATGTCTTAA 57.031 30.769 4.56 0.00 44.58 1.85
2454 3148 4.323417 TGCATGTCTTAACTCCGAATGTT 58.677 39.130 0.00 0.00 0.00 2.71
2460 3154 5.106712 TGTCTTAACTCCGAATGTTGCATTC 60.107 40.000 10.78 10.78 0.00 2.67
2485 3179 4.637534 TCTCTTGGCTAAACATCTGCAATC 59.362 41.667 0.00 0.00 0.00 2.67
2588 3298 2.074729 TTCCTTCTTCCCCGCAAAAA 57.925 45.000 0.00 0.00 0.00 1.94
2609 3319 9.290483 CAAAAAGAAAAGTTACAGTTCCTTCTC 57.710 33.333 0.00 0.00 0.00 2.87
2889 3615 2.606725 GCAGAAATCCAGATCACAGACG 59.393 50.000 0.00 0.00 0.00 4.18
2960 3692 9.890629 TGAATATATACTCTTGTTTCTGCACTT 57.109 29.630 0.00 0.00 0.00 3.16
3112 9040 7.144661 CAGCTATACTTCCTAACAGACATGAG 58.855 42.308 0.00 0.00 0.00 2.90
3124 9052 6.757897 AACAGACATGAGAAAAACAAGACA 57.242 33.333 0.00 0.00 0.00 3.41
3125 9053 6.757897 ACAGACATGAGAAAAACAAGACAA 57.242 33.333 0.00 0.00 0.00 3.18
3175 9103 7.502226 TGCAAACCCCAATATATTAAGAGTCAG 59.498 37.037 0.00 0.00 0.00 3.51
3271 9199 4.402155 ACAGCAAAAGATTGTTCAGAACCA 59.598 37.500 10.93 0.00 38.85 3.67
3287 9215 4.999311 CAGAACCACTTCATCAACAGATGA 59.001 41.667 4.17 4.17 44.71 2.92
3481 11058 6.730977 AGGTATGTAGTATCTGGCCATACAAT 59.269 38.462 17.69 10.78 39.57 2.71
3485 11062 6.319715 TGTAGTATCTGGCCATACAATAGGA 58.680 40.000 16.91 4.54 32.39 2.94
3490 11067 8.890472 AGTATCTGGCCATACAATAGGATAAAA 58.110 33.333 16.91 0.00 32.39 1.52
3491 11068 9.167311 GTATCTGGCCATACAATAGGATAAAAG 57.833 37.037 5.51 0.00 30.61 2.27
3492 11069 7.149202 TCTGGCCATACAATAGGATAAAAGT 57.851 36.000 5.51 0.00 0.00 2.66
3493 11070 8.270137 TCTGGCCATACAATAGGATAAAAGTA 57.730 34.615 5.51 0.00 0.00 2.24
3494 11071 8.375506 TCTGGCCATACAATAGGATAAAAGTAG 58.624 37.037 5.51 0.00 0.00 2.57
3496 11073 6.884836 GGCCATACAATAGGATAAAAGTAGGG 59.115 42.308 0.00 0.00 36.71 3.53
3497 11074 6.884836 GCCATACAATAGGATAAAAGTAGGGG 59.115 42.308 0.00 0.00 34.87 4.79
3500 11077 5.941788 ACAATAGGATAAAAGTAGGGGCAG 58.058 41.667 0.00 0.00 0.00 4.85
3502 11079 6.159751 ACAATAGGATAAAAGTAGGGGCAGAA 59.840 38.462 0.00 0.00 0.00 3.02
3503 11080 6.841781 ATAGGATAAAAGTAGGGGCAGAAA 57.158 37.500 0.00 0.00 0.00 2.52
3505 11082 5.262009 AGGATAAAAGTAGGGGCAGAAAAC 58.738 41.667 0.00 0.00 0.00 2.43
3506 11083 4.401519 GGATAAAAGTAGGGGCAGAAAACC 59.598 45.833 0.00 0.00 0.00 3.27
3512 11089 2.434774 GGGCAGAAAACCCCGAGT 59.565 61.111 0.00 0.00 42.01 4.18
3513 11090 1.681076 GGGCAGAAAACCCCGAGTA 59.319 57.895 0.00 0.00 42.01 2.59
3515 11092 1.487558 GGGCAGAAAACCCCGAGTATA 59.512 52.381 0.00 0.00 42.01 1.47
3516 11093 2.558378 GGCAGAAAACCCCGAGTATAC 58.442 52.381 0.00 0.00 0.00 1.47
3521 11098 3.579586 AGAAAACCCCGAGTATACACACA 59.420 43.478 5.50 0.00 0.00 3.72
3523 11100 1.927487 ACCCCGAGTATACACACACA 58.073 50.000 5.50 0.00 0.00 3.72
3524 11101 2.250031 ACCCCGAGTATACACACACAA 58.750 47.619 5.50 0.00 0.00 3.33
3525 11102 2.633967 ACCCCGAGTATACACACACAAA 59.366 45.455 5.50 0.00 0.00 2.83
3526 11103 2.997986 CCCCGAGTATACACACACAAAC 59.002 50.000 5.50 0.00 0.00 2.93
3527 11104 3.555377 CCCCGAGTATACACACACAAACA 60.555 47.826 5.50 0.00 0.00 2.83
3528 11105 3.430895 CCCGAGTATACACACACAAACAC 59.569 47.826 5.50 0.00 0.00 3.32
3532 11109 5.043737 AGTATACACACACAAACACCCTT 57.956 39.130 5.50 0.00 0.00 3.95
3533 11110 6.177310 AGTATACACACACAAACACCCTTA 57.823 37.500 5.50 0.00 0.00 2.69
3536 11113 3.692690 ACACACACAAACACCCTTAGTT 58.307 40.909 0.00 0.00 0.00 2.24
3537 11114 4.846040 ACACACACAAACACCCTTAGTTA 58.154 39.130 0.00 0.00 0.00 2.24
3538 11115 5.254901 ACACACACAAACACCCTTAGTTAA 58.745 37.500 0.00 0.00 0.00 2.01
3539 11116 5.124297 ACACACACAAACACCCTTAGTTAAC 59.876 40.000 0.00 0.00 0.00 2.01
3541 11118 5.889289 ACACACAAACACCCTTAGTTAACAT 59.111 36.000 8.61 0.00 0.00 2.71
3542 11119 6.038936 ACACACAAACACCCTTAGTTAACATC 59.961 38.462 8.61 0.00 0.00 3.06
3543 11120 5.533528 ACACAAACACCCTTAGTTAACATCC 59.466 40.000 8.61 0.00 0.00 3.51
3544 11121 5.533154 CACAAACACCCTTAGTTAACATCCA 59.467 40.000 8.61 0.00 0.00 3.41
3545 11122 5.768164 ACAAACACCCTTAGTTAACATCCAG 59.232 40.000 8.61 0.00 0.00 3.86
3546 11123 3.951663 ACACCCTTAGTTAACATCCAGC 58.048 45.455 8.61 0.00 0.00 4.85
3547 11124 3.587506 ACACCCTTAGTTAACATCCAGCT 59.412 43.478 8.61 0.00 0.00 4.24
3548 11125 4.781087 ACACCCTTAGTTAACATCCAGCTA 59.219 41.667 8.61 0.00 0.00 3.32
3551 11128 7.126726 ACACCCTTAGTTAACATCCAGCTATTA 59.873 37.037 8.61 0.00 0.00 0.98
3552 11129 8.157476 CACCCTTAGTTAACATCCAGCTATTAT 58.843 37.037 8.61 0.00 0.00 1.28
3553 11130 8.724310 ACCCTTAGTTAACATCCAGCTATTATT 58.276 33.333 8.61 0.00 0.00 1.40
3554 11131 9.220767 CCCTTAGTTAACATCCAGCTATTATTC 57.779 37.037 8.61 0.00 0.00 1.75
3555 11132 9.778741 CCTTAGTTAACATCCAGCTATTATTCA 57.221 33.333 8.61 0.00 0.00 2.57
3567 11144 9.299465 TCCAGCTATTATTCATATTTCATTGCA 57.701 29.630 0.00 0.00 0.00 4.08
3570 11147 9.582431 AGCTATTATTCATATTTCATTGCATGC 57.418 29.630 11.82 11.82 0.00 4.06
3571 11148 9.582431 GCTATTATTCATATTTCATTGCATGCT 57.418 29.630 20.33 0.00 0.00 3.79
3575 11152 9.602568 TTATTCATATTTCATTGCATGCTTTGT 57.397 25.926 20.33 3.62 0.00 2.83
3576 11153 7.908827 TTCATATTTCATTGCATGCTTTGTT 57.091 28.000 20.33 8.39 0.00 2.83
3577 11154 8.999220 TTCATATTTCATTGCATGCTTTGTTA 57.001 26.923 20.33 8.94 0.00 2.41
3578 11155 8.999220 TCATATTTCATTGCATGCTTTGTTAA 57.001 26.923 20.33 13.86 0.00 2.01
3579 11156 8.871862 TCATATTTCATTGCATGCTTTGTTAAC 58.128 29.630 20.33 0.00 0.00 2.01
3580 11157 8.657729 CATATTTCATTGCATGCTTTGTTAACA 58.342 29.630 20.33 3.59 0.00 2.41
3581 11158 7.675962 ATTTCATTGCATGCTTTGTTAACAT 57.324 28.000 20.33 0.00 0.00 2.71
3582 11159 6.709145 TTCATTGCATGCTTTGTTAACATC 57.291 33.333 20.33 2.83 0.00 3.06
3583 11160 5.780984 TCATTGCATGCTTTGTTAACATCA 58.219 33.333 20.33 8.46 0.00 3.07
3584 11161 5.634439 TCATTGCATGCTTTGTTAACATCAC 59.366 36.000 20.33 2.37 0.00 3.06
3585 11162 3.911868 TGCATGCTTTGTTAACATCACC 58.088 40.909 20.33 0.00 0.00 4.02
3586 11163 3.320256 TGCATGCTTTGTTAACATCACCA 59.680 39.130 20.33 5.30 0.00 4.17
3587 11164 4.202192 TGCATGCTTTGTTAACATCACCAA 60.202 37.500 20.33 0.00 0.00 3.67
3588 11165 4.931002 GCATGCTTTGTTAACATCACCAAT 59.069 37.500 11.37 0.00 0.00 3.16
3589 11166 5.062558 GCATGCTTTGTTAACATCACCAATC 59.937 40.000 11.37 0.00 0.00 2.67
3590 11167 5.781210 TGCTTTGTTAACATCACCAATCA 57.219 34.783 9.56 0.00 0.00 2.57
3591 11168 5.527951 TGCTTTGTTAACATCACCAATCAC 58.472 37.500 9.56 0.00 0.00 3.06
3592 11169 5.068329 TGCTTTGTTAACATCACCAATCACA 59.932 36.000 9.56 0.00 0.00 3.58
3593 11170 6.158598 GCTTTGTTAACATCACCAATCACAT 58.841 36.000 9.56 0.00 0.00 3.21
3594 11171 7.040132 TGCTTTGTTAACATCACCAATCACATA 60.040 33.333 9.56 0.00 0.00 2.29
3595 11172 7.812191 GCTTTGTTAACATCACCAATCACATAA 59.188 33.333 9.56 0.00 0.00 1.90
3596 11173 9.859427 CTTTGTTAACATCACCAATCACATAAT 57.141 29.630 9.56 0.00 0.00 1.28
3597 11174 9.853555 TTTGTTAACATCACCAATCACATAATC 57.146 29.630 9.56 0.00 0.00 1.75
3598 11175 8.572855 TGTTAACATCACCAATCACATAATCA 57.427 30.769 3.59 0.00 0.00 2.57
3599 11176 9.018582 TGTTAACATCACCAATCACATAATCAA 57.981 29.630 3.59 0.00 0.00 2.57
3600 11177 9.289303 GTTAACATCACCAATCACATAATCAAC 57.711 33.333 0.00 0.00 0.00 3.18
3601 11178 7.465353 AACATCACCAATCACATAATCAACA 57.535 32.000 0.00 0.00 0.00 3.33
3602 11179 7.649533 ACATCACCAATCACATAATCAACAT 57.350 32.000 0.00 0.00 0.00 2.71
3603 11180 8.750515 ACATCACCAATCACATAATCAACATA 57.249 30.769 0.00 0.00 0.00 2.29
3604 11181 8.843262 ACATCACCAATCACATAATCAACATAG 58.157 33.333 0.00 0.00 0.00 2.23
3605 11182 8.843262 CATCACCAATCACATAATCAACATAGT 58.157 33.333 0.00 0.00 0.00 2.12
3607 11184 9.325198 TCACCAATCACATAATCAACATAGTAC 57.675 33.333 0.00 0.00 0.00 2.73
3608 11185 9.330063 CACCAATCACATAATCAACATAGTACT 57.670 33.333 0.00 0.00 0.00 2.73
3637 11214 9.912634 TTCTTCATCAGAAATATTTCAACAACC 57.087 29.630 26.02 2.31 38.68 3.77
3638 11215 9.300681 TCTTCATCAGAAATATTTCAACAACCT 57.699 29.630 26.02 4.75 39.61 3.50
3639 11216 9.918630 CTTCATCAGAAATATTTCAACAACCTT 57.081 29.630 26.02 4.08 39.61 3.50
3640 11217 9.912634 TTCATCAGAAATATTTCAACAACCTTC 57.087 29.630 26.02 0.23 39.61 3.46
3641 11218 9.076781 TCATCAGAAATATTTCAACAACCTTCA 57.923 29.630 26.02 0.00 39.61 3.02
3642 11219 9.695526 CATCAGAAATATTTCAACAACCTTCAA 57.304 29.630 26.02 2.46 39.61 2.69
3644 11221 9.912634 TCAGAAATATTTCAACAACCTTCAATC 57.087 29.630 26.02 0.00 39.61 2.67
3645 11222 9.143631 CAGAAATATTTCAACAACCTTCAATCC 57.856 33.333 26.02 0.00 39.61 3.01
3646 11223 8.314021 AGAAATATTTCAACAACCTTCAATCCC 58.686 33.333 26.02 0.00 39.61 3.85
3647 11224 7.552050 AATATTTCAACAACCTTCAATCCCA 57.448 32.000 0.00 0.00 0.00 4.37
3648 11225 4.664150 TTTCAACAACCTTCAATCCCAC 57.336 40.909 0.00 0.00 0.00 4.61
3649 11226 3.304911 TCAACAACCTTCAATCCCACA 57.695 42.857 0.00 0.00 0.00 4.17
3650 11227 3.636679 TCAACAACCTTCAATCCCACAA 58.363 40.909 0.00 0.00 0.00 3.33
3651 11228 4.026744 TCAACAACCTTCAATCCCACAAA 58.973 39.130 0.00 0.00 0.00 2.83
3652 11229 4.653341 TCAACAACCTTCAATCCCACAAAT 59.347 37.500 0.00 0.00 0.00 2.32
3653 11230 5.130145 TCAACAACCTTCAATCCCACAAATT 59.870 36.000 0.00 0.00 0.00 1.82
3654 11231 6.325028 TCAACAACCTTCAATCCCACAAATTA 59.675 34.615 0.00 0.00 0.00 1.40
3655 11232 6.739331 ACAACCTTCAATCCCACAAATTAA 57.261 33.333 0.00 0.00 0.00 1.40
3656 11233 7.130681 ACAACCTTCAATCCCACAAATTAAA 57.869 32.000 0.00 0.00 0.00 1.52
3657 11234 7.216494 ACAACCTTCAATCCCACAAATTAAAG 58.784 34.615 0.00 0.00 0.00 1.85
3658 11235 6.994421 ACCTTCAATCCCACAAATTAAAGT 57.006 33.333 0.00 0.00 0.00 2.66
3659 11236 6.758254 ACCTTCAATCCCACAAATTAAAGTG 58.242 36.000 0.00 0.00 35.56 3.16
3660 11237 6.326323 ACCTTCAATCCCACAAATTAAAGTGT 59.674 34.615 0.00 0.00 33.99 3.55
3661 11238 6.868339 CCTTCAATCCCACAAATTAAAGTGTC 59.132 38.462 0.00 0.00 33.99 3.67
3662 11239 6.968263 TCAATCCCACAAATTAAAGTGTCA 57.032 33.333 0.00 0.00 33.99 3.58
3663 11240 7.537596 TCAATCCCACAAATTAAAGTGTCAT 57.462 32.000 0.00 0.00 33.99 3.06
3664 11241 7.961351 TCAATCCCACAAATTAAAGTGTCATT 58.039 30.769 0.00 0.00 33.99 2.57
3665 11242 8.428063 TCAATCCCACAAATTAAAGTGTCATTT 58.572 29.630 0.00 0.00 33.99 2.32
3666 11243 9.054922 CAATCCCACAAATTAAAGTGTCATTTT 57.945 29.630 0.00 0.00 33.99 1.82
3669 11246 9.921637 TCCCACAAATTAAAGTGTCATTTTATC 57.078 29.630 1.79 0.00 33.99 1.75
3670 11247 8.859156 CCCACAAATTAAAGTGTCATTTTATCG 58.141 33.333 1.79 0.00 33.99 2.92
3671 11248 8.372521 CCACAAATTAAAGTGTCATTTTATCGC 58.627 33.333 1.79 0.00 33.99 4.58
3672 11249 8.372521 CACAAATTAAAGTGTCATTTTATCGCC 58.627 33.333 1.79 0.00 0.00 5.54
3673 11250 7.544217 ACAAATTAAAGTGTCATTTTATCGCCC 59.456 33.333 1.79 0.00 0.00 6.13
3674 11251 5.570234 TTAAAGTGTCATTTTATCGCCCC 57.430 39.130 1.79 0.00 0.00 5.80
3675 11252 3.366052 AAGTGTCATTTTATCGCCCCT 57.634 42.857 0.00 0.00 0.00 4.79
3676 11253 3.366052 AGTGTCATTTTATCGCCCCTT 57.634 42.857 0.00 0.00 0.00 3.95
3677 11254 3.016736 AGTGTCATTTTATCGCCCCTTG 58.983 45.455 0.00 0.00 0.00 3.61
3678 11255 1.748493 TGTCATTTTATCGCCCCTTGC 59.252 47.619 0.00 0.00 0.00 4.01
3679 11256 1.067060 GTCATTTTATCGCCCCTTGCC 59.933 52.381 0.00 0.00 36.24 4.52
3680 11257 0.030638 CATTTTATCGCCCCTTGCCG 59.969 55.000 0.00 0.00 36.24 5.69
3681 11258 1.106944 ATTTTATCGCCCCTTGCCGG 61.107 55.000 0.00 0.00 36.24 6.13
3682 11259 2.199613 TTTTATCGCCCCTTGCCGGA 62.200 55.000 5.05 0.00 36.24 5.14
3683 11260 2.199613 TTTATCGCCCCTTGCCGGAA 62.200 55.000 5.05 0.00 36.24 4.30
3684 11261 2.199613 TTATCGCCCCTTGCCGGAAA 62.200 55.000 5.05 0.00 36.24 3.13
3685 11262 1.990160 TATCGCCCCTTGCCGGAAAT 61.990 55.000 5.05 0.00 36.24 2.17
3686 11263 3.518068 CGCCCCTTGCCGGAAATC 61.518 66.667 5.05 0.00 36.24 2.17
3687 11264 3.147595 GCCCCTTGCCGGAAATCC 61.148 66.667 5.05 0.00 33.16 3.01
3688 11265 2.683475 CCCCTTGCCGGAAATCCT 59.317 61.111 5.05 0.00 33.16 3.24
3689 11266 1.919771 CCCCTTGCCGGAAATCCTA 59.080 57.895 5.05 0.00 33.16 2.94
3690 11267 0.465642 CCCCTTGCCGGAAATCCTAC 60.466 60.000 5.05 0.00 33.16 3.18
3691 11268 0.254747 CCCTTGCCGGAAATCCTACA 59.745 55.000 5.05 0.00 33.16 2.74
3692 11269 1.133792 CCCTTGCCGGAAATCCTACAT 60.134 52.381 5.05 0.00 33.16 2.29
3693 11270 2.222027 CCTTGCCGGAAATCCTACATC 58.778 52.381 5.05 0.00 33.16 3.06
3694 11271 2.158755 CCTTGCCGGAAATCCTACATCT 60.159 50.000 5.05 0.00 33.16 2.90
3695 11272 2.910688 TGCCGGAAATCCTACATCTC 57.089 50.000 5.05 0.00 0.00 2.75
3696 11273 2.115427 TGCCGGAAATCCTACATCTCA 58.885 47.619 5.05 0.00 0.00 3.27
3697 11274 2.705658 TGCCGGAAATCCTACATCTCAT 59.294 45.455 5.05 0.00 0.00 2.90
3698 11275 3.244215 TGCCGGAAATCCTACATCTCATC 60.244 47.826 5.05 0.00 0.00 2.92
3699 11276 3.866449 GCCGGAAATCCTACATCTCATCC 60.866 52.174 5.05 0.00 0.00 3.51
3700 11277 3.579709 CGGAAATCCTACATCTCATCCG 58.420 50.000 0.00 0.00 42.01 4.18
3701 11278 3.615110 CGGAAATCCTACATCTCATCCGG 60.615 52.174 0.00 0.00 43.52 5.14
3742 11319 3.745799 TCGTAAGCCCATGTTTGAAGAA 58.254 40.909 0.00 0.00 37.18 2.52
3754 11331 7.219322 CCATGTTTGAAGAATTCCTTTTCCTT 58.781 34.615 0.65 0.00 46.93 3.36
3764 11341 4.911514 TTCCTTTTCCTTGTAAGTGCAC 57.088 40.909 9.40 9.40 0.00 4.57
3772 11349 2.353269 CCTTGTAAGTGCACGTGTGAAA 59.647 45.455 18.38 4.30 0.00 2.69
3774 11351 1.666700 TGTAAGTGCACGTGTGAAACC 59.333 47.619 18.38 0.00 34.36 3.27
3790 11367 7.201410 CGTGTGAAACCTTATGTGTAGTACATC 60.201 40.741 6.21 1.42 42.60 3.06
3801 11378 3.547868 GTGTAGTACATCTGTGACGCATG 59.452 47.826 6.21 0.00 0.00 4.06
3882 11462 3.009473 TCCCCAATCAAGGTCTTCAGAAG 59.991 47.826 3.45 3.45 0.00 2.85
3883 11463 3.009473 CCCCAATCAAGGTCTTCAGAAGA 59.991 47.826 8.95 8.95 34.51 2.87
3968 11548 1.067213 GCTCCTGAGAAGAAGCGACTT 60.067 52.381 0.00 0.00 0.00 3.01
4034 11614 2.854777 CACACCTCGAATCGACAGAATC 59.145 50.000 0.00 0.00 0.00 2.52
4240 11828 3.274288 GAAGTTCATCCGATTTGAGGCT 58.726 45.455 0.00 0.00 0.00 4.58
4247 11835 2.179427 TCCGATTTGAGGCTGAAGAGA 58.821 47.619 0.00 0.00 0.00 3.10
4256 11844 1.895798 AGGCTGAAGAGATTCGACACA 59.104 47.619 0.00 0.00 0.00 3.72
4458 12053 3.117131 AGGAGAGGCCTCAAAAGGAAAAA 60.117 43.478 33.90 0.00 46.97 1.94
4504 12099 7.042389 GCATCTTTATTAGCTTCAGTCTGTACC 60.042 40.741 0.00 0.00 0.00 3.34
4571 12256 5.774498 ACTCCAATTTTCTGACCTGAAAC 57.226 39.130 2.25 0.00 35.91 2.78
4706 12397 4.742438 TGTAATTCGGCTGTTCTTGTTC 57.258 40.909 0.00 0.00 0.00 3.18
4747 12440 1.609072 GACTTTCAGTGTTGGCCCTTC 59.391 52.381 0.00 0.00 0.00 3.46
4751 12444 1.604593 CAGTGTTGGCCCTTCCTGG 60.605 63.158 0.00 0.00 35.26 4.45
4966 16002 4.237724 GCTCCCAAGTTTATTCAAAGTGC 58.762 43.478 0.00 0.00 0.00 4.40
4979 16023 3.554934 TCAAAGTGCTGTTCTGATTGGT 58.445 40.909 0.00 0.00 0.00 3.67
5006 16050 8.295288 GCCCAAGAAGATTAATATGTCATTGAG 58.705 37.037 0.00 0.00 0.00 3.02
5027 16071 2.408271 TGTCATGATCACAAGGGCTC 57.592 50.000 0.00 0.00 0.00 4.70
5152 17019 7.093992 ACAACATAATTTCCCCATTTTACACG 58.906 34.615 0.00 0.00 0.00 4.49
5310 17181 2.951642 CTCAACAACTCCTTCCAAAGCA 59.048 45.455 0.00 0.00 0.00 3.91
5319 17190 2.040813 TCCTTCCAAAGCAGCAATCTCT 59.959 45.455 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.279671 ACGTAGCAAAGAGGAGATGATAGG 59.720 45.833 0.00 0.00 0.00 2.57
1 2 5.218885 CACGTAGCAAAGAGGAGATGATAG 58.781 45.833 0.00 0.00 0.00 2.08
2 3 4.038042 CCACGTAGCAAAGAGGAGATGATA 59.962 45.833 0.00 0.00 0.00 2.15
5 6 2.544685 CCACGTAGCAAAGAGGAGATG 58.455 52.381 0.00 0.00 0.00 2.90
6 7 1.134670 GCCACGTAGCAAAGAGGAGAT 60.135 52.381 0.00 0.00 0.00 2.75
7 8 0.246635 GCCACGTAGCAAAGAGGAGA 59.753 55.000 0.00 0.00 0.00 3.71
8 9 0.741221 GGCCACGTAGCAAAGAGGAG 60.741 60.000 8.54 0.00 0.00 3.69
9 10 1.295423 GGCCACGTAGCAAAGAGGA 59.705 57.895 8.54 0.00 0.00 3.71
10 11 0.392998 ATGGCCACGTAGCAAAGAGG 60.393 55.000 8.16 0.00 0.00 3.69
11 12 0.729116 CATGGCCACGTAGCAAAGAG 59.271 55.000 8.16 0.00 0.00 2.85
12 13 0.323302 TCATGGCCACGTAGCAAAGA 59.677 50.000 8.16 0.00 0.00 2.52
13 14 0.447801 GTCATGGCCACGTAGCAAAG 59.552 55.000 8.16 0.00 0.00 2.77
14 15 0.036164 AGTCATGGCCACGTAGCAAA 59.964 50.000 8.16 0.00 0.00 3.68
15 16 0.036164 AAGTCATGGCCACGTAGCAA 59.964 50.000 8.16 0.00 0.00 3.91
16 17 0.673333 CAAGTCATGGCCACGTAGCA 60.673 55.000 8.16 0.00 0.00 3.49
17 18 0.673644 ACAAGTCATGGCCACGTAGC 60.674 55.000 8.16 0.00 0.00 3.58
18 19 1.078709 CACAAGTCATGGCCACGTAG 58.921 55.000 8.16 0.00 0.00 3.51
19 20 0.321210 CCACAAGTCATGGCCACGTA 60.321 55.000 8.16 0.00 0.00 3.57
20 21 1.600636 CCACAAGTCATGGCCACGT 60.601 57.895 8.16 0.00 0.00 4.49
21 22 2.334946 CCCACAAGTCATGGCCACG 61.335 63.158 8.16 0.00 35.74 4.94
22 23 2.639327 GCCCACAAGTCATGGCCAC 61.639 63.158 8.16 0.00 37.94 5.01
23 24 2.283101 GCCCACAAGTCATGGCCA 60.283 61.111 8.56 8.56 37.94 5.36
25 26 2.283101 TGGCCCACAAGTCATGGC 60.283 61.111 0.00 0.00 43.26 4.40
26 27 2.334946 CGTGGCCCACAAGTCATGG 61.335 63.158 15.45 0.00 33.40 3.66
27 28 2.334946 CCGTGGCCCACAAGTCATG 61.335 63.158 15.45 0.00 33.40 3.07
28 29 2.034066 CCGTGGCCCACAAGTCAT 59.966 61.111 15.45 0.00 33.40 3.06
29 30 4.947147 GCCGTGGCCCACAAGTCA 62.947 66.667 15.45 0.00 33.40 3.41
30 31 2.536997 ATAGCCGTGGCCCACAAGTC 62.537 60.000 15.45 0.00 43.17 3.01
31 32 2.536997 GATAGCCGTGGCCCACAAGT 62.537 60.000 15.45 0.00 43.17 3.16
32 33 1.819632 GATAGCCGTGGCCCACAAG 60.820 63.158 15.45 5.56 43.17 3.16
33 34 2.270850 GATAGCCGTGGCCCACAA 59.729 61.111 15.45 0.00 43.17 3.33
34 35 3.006133 TGATAGCCGTGGCCCACA 61.006 61.111 15.45 2.41 43.17 4.17
35 36 2.203070 CTGATAGCCGTGGCCCAC 60.203 66.667 2.98 2.98 43.17 4.61
36 37 1.558167 TTTCTGATAGCCGTGGCCCA 61.558 55.000 7.39 2.79 43.17 5.36
37 38 0.393808 TTTTCTGATAGCCGTGGCCC 60.394 55.000 7.39 0.00 43.17 5.80
38 39 1.334869 CATTTTCTGATAGCCGTGGCC 59.665 52.381 7.39 0.00 43.17 5.36
39 40 1.334869 CCATTTTCTGATAGCCGTGGC 59.665 52.381 1.67 1.67 42.33 5.01
40 41 2.643551 ACCATTTTCTGATAGCCGTGG 58.356 47.619 0.00 0.00 0.00 4.94
41 42 3.689161 TGAACCATTTTCTGATAGCCGTG 59.311 43.478 0.00 0.00 0.00 4.94
42 43 3.950397 TGAACCATTTTCTGATAGCCGT 58.050 40.909 0.00 0.00 0.00 5.68
43 44 4.963276 TTGAACCATTTTCTGATAGCCG 57.037 40.909 0.00 0.00 0.00 5.52
44 45 9.651913 TTAAATTTGAACCATTTTCTGATAGCC 57.348 29.630 0.00 0.00 0.00 3.93
58 59 6.342111 TGACTGGTTTGGTTAAATTTGAACC 58.658 36.000 8.56 8.56 45.64 3.62
59 60 7.096230 CGATGACTGGTTTGGTTAAATTTGAAC 60.096 37.037 0.00 0.00 0.00 3.18
60 61 6.920758 CGATGACTGGTTTGGTTAAATTTGAA 59.079 34.615 0.00 0.00 0.00 2.69
61 62 6.442952 CGATGACTGGTTTGGTTAAATTTGA 58.557 36.000 0.00 0.00 0.00 2.69
62 63 5.633182 CCGATGACTGGTTTGGTTAAATTTG 59.367 40.000 0.00 0.00 0.00 2.32
63 64 5.303333 ACCGATGACTGGTTTGGTTAAATTT 59.697 36.000 0.00 0.00 35.82 1.82
64 65 4.830600 ACCGATGACTGGTTTGGTTAAATT 59.169 37.500 0.00 0.00 35.82 1.82
65 66 4.217550 CACCGATGACTGGTTTGGTTAAAT 59.782 41.667 0.00 0.00 37.72 1.40
66 67 3.566322 CACCGATGACTGGTTTGGTTAAA 59.434 43.478 0.00 0.00 37.72 1.52
67 68 3.142951 CACCGATGACTGGTTTGGTTAA 58.857 45.455 0.00 0.00 37.72 2.01
68 69 2.105134 ACACCGATGACTGGTTTGGTTA 59.895 45.455 0.00 0.00 37.72 2.85
69 70 1.133915 ACACCGATGACTGGTTTGGTT 60.134 47.619 0.00 0.00 37.72 3.67
70 71 0.472471 ACACCGATGACTGGTTTGGT 59.528 50.000 0.00 0.00 37.72 3.67
71 72 1.604604 AACACCGATGACTGGTTTGG 58.395 50.000 0.00 0.00 37.72 3.28
72 73 3.315191 AGAAAACACCGATGACTGGTTTG 59.685 43.478 0.00 0.00 37.72 2.93
73 74 3.315191 CAGAAAACACCGATGACTGGTTT 59.685 43.478 0.00 0.00 37.72 3.27
74 75 2.878406 CAGAAAACACCGATGACTGGTT 59.122 45.455 0.00 0.00 37.72 3.67
75 76 2.494059 CAGAAAACACCGATGACTGGT 58.506 47.619 0.00 0.00 41.47 4.00
76 77 1.197721 GCAGAAAACACCGATGACTGG 59.802 52.381 0.00 0.00 0.00 4.00
77 78 1.872952 TGCAGAAAACACCGATGACTG 59.127 47.619 0.00 0.00 0.00 3.51
78 79 2.254546 TGCAGAAAACACCGATGACT 57.745 45.000 0.00 0.00 0.00 3.41
79 80 3.559238 ATTGCAGAAAACACCGATGAC 57.441 42.857 0.00 0.00 0.00 3.06
80 81 4.582701 AAATTGCAGAAAACACCGATGA 57.417 36.364 0.00 0.00 0.00 2.92
81 82 5.655893 AAAAATTGCAGAAAACACCGATG 57.344 34.783 0.00 0.00 0.00 3.84
101 102 9.930693 ACCGAATAAATAGCATAAAAACCAAAA 57.069 25.926 0.00 0.00 0.00 2.44
102 103 9.930693 AACCGAATAAATAGCATAAAAACCAAA 57.069 25.926 0.00 0.00 0.00 3.28
103 104 9.930693 AAACCGAATAAATAGCATAAAAACCAA 57.069 25.926 0.00 0.00 0.00 3.67
104 105 9.575783 GAAACCGAATAAATAGCATAAAAACCA 57.424 29.630 0.00 0.00 0.00 3.67
105 106 9.797556 AGAAACCGAATAAATAGCATAAAAACC 57.202 29.630 0.00 0.00 0.00 3.27
108 109 9.997482 GTGAGAAACCGAATAAATAGCATAAAA 57.003 29.630 0.00 0.00 0.00 1.52
109 110 9.168451 TGTGAGAAACCGAATAAATAGCATAAA 57.832 29.630 0.00 0.00 0.00 1.40
122 123 1.134521 AGCACAGTGTGAGAAACCGAA 60.135 47.619 27.37 0.00 35.23 4.30
141 142 6.144854 TGTTCAAAATTTGCTCGAATCTGAG 58.855 36.000 0.00 0.00 39.05 3.35
144 145 5.691754 GGTTGTTCAAAATTTGCTCGAATCT 59.308 36.000 0.00 0.00 0.00 2.40
145 146 5.107491 GGGTTGTTCAAAATTTGCTCGAATC 60.107 40.000 0.00 0.00 0.00 2.52
172 173 2.725759 CGCGTCACTTGATTGTTGATGG 60.726 50.000 0.00 0.00 0.00 3.51
199 200 9.871238 AATCAATATCTACACGTTCTAGTTTGT 57.129 29.630 0.00 0.00 0.00 2.83
244 245 0.742281 GCCAGATCTCGAGCTTTGCA 60.742 55.000 7.81 0.00 0.00 4.08
248 249 0.459489 GAGTGCCAGATCTCGAGCTT 59.541 55.000 7.81 0.00 0.00 3.74
279 280 0.681564 TTGGGCGACACTGGTTTTGT 60.682 50.000 0.00 0.00 0.00 2.83
307 308 7.097834 AGCGATTAAGTCTATTATTGGGCTAC 58.902 38.462 0.00 0.00 0.00 3.58
345 346 2.084546 GGACATGGAAGCAAGTACCAC 58.915 52.381 0.00 0.00 36.49 4.16
347 348 2.359900 CAGGACATGGAAGCAAGTACC 58.640 52.381 0.00 0.00 0.00 3.34
380 385 7.178451 AGACAAATTACAGGGTTTCTTATTGGG 59.822 37.037 0.00 0.00 0.00 4.12
388 393 5.535030 AGTGGAAGACAAATTACAGGGTTTC 59.465 40.000 0.00 0.00 0.00 2.78
393 398 4.074970 AGCAGTGGAAGACAAATTACAGG 58.925 43.478 0.00 0.00 0.00 4.00
420 425 1.296715 CTTCCTGTACAAGCCGGCT 59.703 57.895 27.08 27.08 0.00 5.52
462 467 3.119245 GGGCTTATTCCGTATCGCTGATA 60.119 47.826 0.00 0.00 0.00 2.15
466 471 1.045407 TGGGCTTATTCCGTATCGCT 58.955 50.000 0.00 0.00 0.00 4.93
474 479 5.509670 GGAGCATTGTTTATGGGCTTATTCC 60.510 44.000 0.00 0.00 34.44 3.01
523 528 8.328758 AGAGAGAGAGAGAGAGATTTGACTAAA 58.671 37.037 0.00 0.00 0.00 1.85
524 529 7.861629 AGAGAGAGAGAGAGAGATTTGACTAA 58.138 38.462 0.00 0.00 0.00 2.24
540 545 5.360999 TGTGTAGAGAGAGAGAGAGAGAGAG 59.639 48.000 0.00 0.00 0.00 3.20
541 546 5.127194 GTGTGTAGAGAGAGAGAGAGAGAGA 59.873 48.000 0.00 0.00 0.00 3.10
542 547 5.127845 AGTGTGTAGAGAGAGAGAGAGAGAG 59.872 48.000 0.00 0.00 0.00 3.20
543 548 5.023452 AGTGTGTAGAGAGAGAGAGAGAGA 58.977 45.833 0.00 0.00 0.00 3.10
544 549 5.111989 CAGTGTGTAGAGAGAGAGAGAGAG 58.888 50.000 0.00 0.00 0.00 3.20
545 550 4.530553 ACAGTGTGTAGAGAGAGAGAGAGA 59.469 45.833 0.00 0.00 0.00 3.10
546 551 4.832248 ACAGTGTGTAGAGAGAGAGAGAG 58.168 47.826 0.00 0.00 0.00 3.20
547 552 4.901197 ACAGTGTGTAGAGAGAGAGAGA 57.099 45.455 0.00 0.00 0.00 3.10
548 553 4.092821 CGAACAGTGTGTAGAGAGAGAGAG 59.907 50.000 0.00 0.00 0.00 3.20
549 554 3.997681 CGAACAGTGTGTAGAGAGAGAGA 59.002 47.826 0.00 0.00 0.00 3.10
550 555 3.425625 GCGAACAGTGTGTAGAGAGAGAG 60.426 52.174 0.00 0.00 0.00 3.20
551 556 2.484651 GCGAACAGTGTGTAGAGAGAGA 59.515 50.000 0.00 0.00 0.00 3.10
552 557 2.226674 TGCGAACAGTGTGTAGAGAGAG 59.773 50.000 0.00 0.00 0.00 3.20
553 558 2.226674 CTGCGAACAGTGTGTAGAGAGA 59.773 50.000 0.00 0.00 39.22 3.10
554 559 2.590073 CTGCGAACAGTGTGTAGAGAG 58.410 52.381 0.00 0.00 39.22 3.20
555 560 1.335964 GCTGCGAACAGTGTGTAGAGA 60.336 52.381 0.00 0.00 46.30 3.10
556 561 1.063806 GCTGCGAACAGTGTGTAGAG 58.936 55.000 0.00 0.00 46.30 2.43
557 562 3.195041 GCTGCGAACAGTGTGTAGA 57.805 52.632 0.00 0.00 46.30 2.59
625 631 0.394565 AGAGCGAGAGGTTTGCAGTT 59.605 50.000 0.00 0.00 45.11 3.16
661 1170 3.366739 CTGGTTACGGAGGGACGGC 62.367 68.421 0.00 0.00 38.39 5.68
675 1184 2.109517 CTGTGCACTCTGCCTCTGGT 62.110 60.000 19.41 0.00 44.23 4.00
682 1191 1.578423 GAAAGCCTGTGCACTCTGC 59.422 57.895 19.41 16.88 45.29 4.26
683 1192 1.239968 GGGAAAGCCTGTGCACTCTG 61.240 60.000 19.41 7.41 41.13 3.35
684 1193 1.073897 GGGAAAGCCTGTGCACTCT 59.926 57.895 19.41 9.56 41.13 3.24
685 1194 0.957888 GAGGGAAAGCCTGTGCACTC 60.958 60.000 19.41 5.65 41.13 3.51
686 1195 1.073897 GAGGGAAAGCCTGTGCACT 59.926 57.895 19.41 0.00 41.13 4.40
687 1196 0.957888 GAGAGGGAAAGCCTGTGCAC 60.958 60.000 10.75 10.75 41.13 4.57
688 1197 1.130054 AGAGAGGGAAAGCCTGTGCA 61.130 55.000 0.00 0.00 41.13 4.57
689 1198 0.905357 TAGAGAGGGAAAGCCTGTGC 59.095 55.000 0.00 0.00 37.95 4.57
690 1199 3.703001 TTTAGAGAGGGAAAGCCTGTG 57.297 47.619 0.00 0.00 0.00 3.66
701 1210 5.126779 GCCTGGGTTCTATTTTTAGAGAGG 58.873 45.833 0.00 0.00 0.00 3.69
703 1212 4.468510 TCGCCTGGGTTCTATTTTTAGAGA 59.531 41.667 0.00 0.00 0.00 3.10
786 1298 4.899239 GCTGATGGACGGCGGGAG 62.899 72.222 13.24 0.00 41.21 4.30
803 1315 6.506357 CGAAGAAAAGAAAAACCGAAGCAAAG 60.506 38.462 0.00 0.00 0.00 2.77
828 1340 4.113354 ACGAAATCGATTCTAGCTGGAAC 58.887 43.478 15.40 8.28 43.02 3.62
832 1344 5.276584 CCAAAGACGAAATCGATTCTAGCTG 60.277 44.000 11.83 3.78 43.02 4.24
834 1346 4.551024 GCCAAAGACGAAATCGATTCTAGC 60.551 45.833 11.83 5.13 43.02 3.42
880 1393 4.511454 GCAAGAAAAACACCCAAGGAAATC 59.489 41.667 0.00 0.00 0.00 2.17
955 1472 7.040823 CCCTAATCTGATTCAGCCAAATAGAAC 60.041 40.741 6.10 0.00 0.00 3.01
1023 1613 2.002625 GGAGCCCTTCCCAATCTGT 58.997 57.895 0.00 0.00 40.37 3.41
1099 1700 1.480954 GAGGATGAACAAGCGAGGGTA 59.519 52.381 0.00 0.00 0.00 3.69
1105 1717 3.201290 AGCATAAGAGGATGAACAAGCG 58.799 45.455 0.00 0.00 0.00 4.68
1233 1851 1.134936 GGAAGAAAGAGCGAGACCTCC 60.135 57.143 0.00 0.00 32.17 4.30
1259 1877 2.079158 CTGACATGTGACATGACACCC 58.921 52.381 30.26 13.94 39.69 4.61
1260 1878 1.466167 GCTGACATGTGACATGACACC 59.534 52.381 30.26 18.05 39.69 4.16
1307 1936 7.118101 CGAACAAAATGGTGAATTTCATCCAAT 59.882 33.333 18.35 11.39 37.51 3.16
1329 1970 3.786635 AGCTCCATCTGTATGAACGAAC 58.213 45.455 0.00 0.00 34.84 3.95
1330 1971 3.447229 TGAGCTCCATCTGTATGAACGAA 59.553 43.478 12.15 0.00 34.84 3.85
1331 1972 3.023832 TGAGCTCCATCTGTATGAACGA 58.976 45.455 12.15 0.00 34.84 3.85
1332 1973 3.443099 TGAGCTCCATCTGTATGAACG 57.557 47.619 12.15 0.00 34.84 3.95
1442 2086 2.368875 CTCTTAGGACCCGCCAATATGT 59.631 50.000 0.00 0.00 40.02 2.29
1530 2175 6.578023 TGAATCCTTCGGTTGAAACAAATTT 58.422 32.000 0.00 0.00 32.66 1.82
1533 2178 5.068460 ACATGAATCCTTCGGTTGAAACAAA 59.932 36.000 0.00 0.00 32.66 2.83
1563 2217 0.033504 ACACTCATTTCAGGCGACGT 59.966 50.000 0.00 0.00 0.00 4.34
1596 2251 1.026718 GCACACATAGCACCCCTGAC 61.027 60.000 0.00 0.00 0.00 3.51
1669 2326 5.218139 GTTCCAAATTCAGTTCAGAGCTTG 58.782 41.667 0.00 0.00 0.00 4.01
1694 2351 7.636259 AACAAATATCCACAATTTTGTCACG 57.364 32.000 0.00 0.00 40.39 4.35
1700 2357 8.217111 ACAGGGAAAACAAATATCCACAATTTT 58.783 29.630 0.00 0.00 34.82 1.82
1710 2367 4.806640 CCTGCACAGGGAAAACAAATAT 57.193 40.909 8.93 0.00 44.87 1.28
1724 2381 0.698238 AATGGCCTCTAACCTGCACA 59.302 50.000 3.32 0.00 0.00 4.57
1725 2382 2.710096 TAATGGCCTCTAACCTGCAC 57.290 50.000 3.32 0.00 0.00 4.57
1752 2416 1.006832 CCGAGAAATGGCTACCGTTG 58.993 55.000 0.00 0.00 32.46 4.10
1758 2422 1.343075 ACCTCCTCCGAGAAATGGCTA 60.343 52.381 0.00 0.00 38.52 3.93
2442 3136 4.074970 AGAAGAATGCAACATTCGGAGTT 58.925 39.130 13.12 4.06 33.51 3.01
2443 3137 3.679389 AGAAGAATGCAACATTCGGAGT 58.321 40.909 13.12 2.71 33.51 3.85
2454 3148 4.397420 TGTTTAGCCAAGAGAAGAATGCA 58.603 39.130 0.00 0.00 0.00 3.96
2460 3154 4.005650 TGCAGATGTTTAGCCAAGAGAAG 58.994 43.478 0.00 0.00 0.00 2.85
2485 3179 3.997681 CTCATAGATGCAGCATCCTGAAG 59.002 47.826 28.57 18.11 41.36 3.02
2554 3256 9.074576 GGGAAGAAGGAATTGTAACTTAAAGAA 57.925 33.333 0.00 0.00 0.00 2.52
2588 3298 5.915175 ACGAGAAGGAACTGTAACTTTTCT 58.085 37.500 10.82 8.14 40.86 2.52
2609 3319 7.688167 GTGAAACATCATATGTCACAACTTACG 59.312 37.037 15.06 0.00 44.07 3.18
2889 3615 8.021973 TCTCTAGAAAAATGACTCGTACACTTC 58.978 37.037 0.00 0.00 0.00 3.01
2960 3692 2.694628 GAGGCAATGGGATGTGCAAATA 59.305 45.455 0.00 0.00 42.74 1.40
3112 9040 7.701924 TCATCAGAACATGTTGTCTTGTTTTTC 59.298 33.333 17.58 0.00 40.40 2.29
3124 9052 7.698506 ATTGTCTTCATCATCAGAACATGTT 57.301 32.000 11.78 11.78 0.00 2.71
3125 9053 7.535997 CAATTGTCTTCATCATCAGAACATGT 58.464 34.615 0.00 0.00 0.00 3.21
3175 9103 7.606456 TCCACAATCCTCTGTACTTTAAATGAC 59.394 37.037 0.00 0.00 0.00 3.06
3287 9215 2.249139 GACCTGGACTGGTAACTGACT 58.751 52.381 0.00 0.00 41.00 3.41
3357 10934 1.217244 GTACGTGCCGGTGATCCTT 59.783 57.895 1.90 0.00 0.00 3.36
3481 11058 6.420638 GTTTTCTGCCCCTACTTTTATCCTA 58.579 40.000 0.00 0.00 0.00 2.94
3485 11062 4.350245 GGGTTTTCTGCCCCTACTTTTAT 58.650 43.478 0.00 0.00 40.26 1.40
3496 11073 2.093341 TGTATACTCGGGGTTTTCTGCC 60.093 50.000 4.17 0.00 0.00 4.85
3497 11074 2.934553 GTGTATACTCGGGGTTTTCTGC 59.065 50.000 4.17 0.00 0.00 4.26
3500 11077 3.681417 GTGTGTGTATACTCGGGGTTTTC 59.319 47.826 4.17 0.00 0.00 2.29
3502 11079 2.633967 TGTGTGTGTATACTCGGGGTTT 59.366 45.455 4.17 0.00 0.00 3.27
3503 11080 2.250031 TGTGTGTGTATACTCGGGGTT 58.750 47.619 4.17 0.00 0.00 4.11
3505 11082 2.997986 GTTTGTGTGTGTATACTCGGGG 59.002 50.000 4.17 0.00 0.00 5.73
3506 11083 3.430895 GTGTTTGTGTGTGTATACTCGGG 59.569 47.826 4.17 0.00 0.00 5.14
3507 11084 3.430895 GGTGTTTGTGTGTGTATACTCGG 59.569 47.826 4.17 0.00 0.00 4.63
3508 11085 3.430895 GGGTGTTTGTGTGTGTATACTCG 59.569 47.826 4.17 0.00 0.00 4.18
3509 11086 4.638304 AGGGTGTTTGTGTGTGTATACTC 58.362 43.478 4.17 0.83 0.00 2.59
3510 11087 4.699925 AGGGTGTTTGTGTGTGTATACT 57.300 40.909 4.17 0.00 0.00 2.12
3511 11088 5.993441 ACTAAGGGTGTTTGTGTGTGTATAC 59.007 40.000 0.00 0.00 0.00 1.47
3512 11089 6.177310 ACTAAGGGTGTTTGTGTGTGTATA 57.823 37.500 0.00 0.00 0.00 1.47
3513 11090 5.043737 ACTAAGGGTGTTTGTGTGTGTAT 57.956 39.130 0.00 0.00 0.00 2.29
3515 11092 3.359695 ACTAAGGGTGTTTGTGTGTGT 57.640 42.857 0.00 0.00 0.00 3.72
3516 11093 5.124138 TGTTAACTAAGGGTGTTTGTGTGTG 59.876 40.000 7.22 0.00 0.00 3.82
3521 11098 5.697067 TGGATGTTAACTAAGGGTGTTTGT 58.303 37.500 7.22 0.00 0.00 2.83
3523 11100 4.765339 GCTGGATGTTAACTAAGGGTGTTT 59.235 41.667 7.22 0.00 0.00 2.83
3524 11101 4.042934 AGCTGGATGTTAACTAAGGGTGTT 59.957 41.667 7.22 0.00 0.00 3.32
3525 11102 3.587506 AGCTGGATGTTAACTAAGGGTGT 59.412 43.478 7.22 0.00 0.00 4.16
3526 11103 4.222124 AGCTGGATGTTAACTAAGGGTG 57.778 45.455 7.22 0.00 0.00 4.61
3527 11104 6.576778 AATAGCTGGATGTTAACTAAGGGT 57.423 37.500 7.22 2.36 0.00 4.34
3528 11105 9.220767 GAATAATAGCTGGATGTTAACTAAGGG 57.779 37.037 7.22 0.00 0.00 3.95
3541 11118 9.299465 TGCAATGAAATATGAATAATAGCTGGA 57.701 29.630 0.00 0.00 0.00 3.86
3562 11139 4.931002 GGTGATGTTAACAAAGCATGCAAT 59.069 37.500 21.98 5.17 0.00 3.56
3563 11140 4.202192 TGGTGATGTTAACAAAGCATGCAA 60.202 37.500 21.98 0.36 0.00 4.08
3564 11141 3.320256 TGGTGATGTTAACAAAGCATGCA 59.680 39.130 21.98 0.00 0.00 3.96
3565 11142 3.911868 TGGTGATGTTAACAAAGCATGC 58.088 40.909 13.23 10.51 0.00 4.06
3566 11143 6.089820 GTGATTGGTGATGTTAACAAAGCATG 59.910 38.462 20.56 0.00 30.15 4.06
3567 11144 6.158598 GTGATTGGTGATGTTAACAAAGCAT 58.841 36.000 20.56 13.63 30.15 3.79
3568 11145 5.068329 TGTGATTGGTGATGTTAACAAAGCA 59.932 36.000 13.23 15.98 0.00 3.91
3569 11146 5.527951 TGTGATTGGTGATGTTAACAAAGC 58.472 37.500 13.23 13.65 0.00 3.51
3570 11147 9.859427 ATTATGTGATTGGTGATGTTAACAAAG 57.141 29.630 13.23 0.00 0.00 2.77
3571 11148 9.853555 GATTATGTGATTGGTGATGTTAACAAA 57.146 29.630 13.23 2.05 0.00 2.83
3572 11149 9.018582 TGATTATGTGATTGGTGATGTTAACAA 57.981 29.630 13.23 0.00 0.00 2.83
3573 11150 8.572855 TGATTATGTGATTGGTGATGTTAACA 57.427 30.769 11.41 11.41 0.00 2.41
3574 11151 9.289303 GTTGATTATGTGATTGGTGATGTTAAC 57.711 33.333 0.00 0.00 0.00 2.01
3575 11152 9.018582 TGTTGATTATGTGATTGGTGATGTTAA 57.981 29.630 0.00 0.00 0.00 2.01
3576 11153 8.572855 TGTTGATTATGTGATTGGTGATGTTA 57.427 30.769 0.00 0.00 0.00 2.41
3577 11154 7.465353 TGTTGATTATGTGATTGGTGATGTT 57.535 32.000 0.00 0.00 0.00 2.71
3578 11155 7.649533 ATGTTGATTATGTGATTGGTGATGT 57.350 32.000 0.00 0.00 0.00 3.06
3579 11156 8.843262 ACTATGTTGATTATGTGATTGGTGATG 58.157 33.333 0.00 0.00 0.00 3.07
3580 11157 8.985315 ACTATGTTGATTATGTGATTGGTGAT 57.015 30.769 0.00 0.00 0.00 3.06
3581 11158 9.325198 GTACTATGTTGATTATGTGATTGGTGA 57.675 33.333 0.00 0.00 0.00 4.02
3582 11159 9.330063 AGTACTATGTTGATTATGTGATTGGTG 57.670 33.333 0.00 0.00 0.00 4.17
3611 11188 9.912634 GGTTGTTGAAATATTTCTGATGAAGAA 57.087 29.630 24.77 14.02 43.37 2.52
3612 11189 9.300681 AGGTTGTTGAAATATTTCTGATGAAGA 57.699 29.630 24.77 9.56 38.02 2.87
3613 11190 9.918630 AAGGTTGTTGAAATATTTCTGATGAAG 57.081 29.630 24.77 0.00 38.02 3.02
3614 11191 9.912634 GAAGGTTGTTGAAATATTTCTGATGAA 57.087 29.630 24.77 10.78 38.02 2.57
3615 11192 9.076781 TGAAGGTTGTTGAAATATTTCTGATGA 57.923 29.630 24.77 5.56 38.02 2.92
3616 11193 9.695526 TTGAAGGTTGTTGAAATATTTCTGATG 57.304 29.630 24.77 0.00 38.02 3.07
3618 11195 9.912634 GATTGAAGGTTGTTGAAATATTTCTGA 57.087 29.630 24.77 13.32 38.02 3.27
3619 11196 9.143631 GGATTGAAGGTTGTTGAAATATTTCTG 57.856 33.333 24.77 0.00 38.02 3.02
3620 11197 8.314021 GGGATTGAAGGTTGTTGAAATATTTCT 58.686 33.333 24.77 5.98 38.02 2.52
3621 11198 8.093927 TGGGATTGAAGGTTGTTGAAATATTTC 58.906 33.333 19.37 19.37 37.69 2.17
3622 11199 7.877612 GTGGGATTGAAGGTTGTTGAAATATTT 59.122 33.333 0.00 0.00 0.00 1.40
3623 11200 7.016072 TGTGGGATTGAAGGTTGTTGAAATATT 59.984 33.333 0.00 0.00 0.00 1.28
3624 11201 6.496565 TGTGGGATTGAAGGTTGTTGAAATAT 59.503 34.615 0.00 0.00 0.00 1.28
3625 11202 5.835819 TGTGGGATTGAAGGTTGTTGAAATA 59.164 36.000 0.00 0.00 0.00 1.40
3626 11203 4.653341 TGTGGGATTGAAGGTTGTTGAAAT 59.347 37.500 0.00 0.00 0.00 2.17
3627 11204 4.026744 TGTGGGATTGAAGGTTGTTGAAA 58.973 39.130 0.00 0.00 0.00 2.69
3628 11205 3.636679 TGTGGGATTGAAGGTTGTTGAA 58.363 40.909 0.00 0.00 0.00 2.69
3629 11206 3.304911 TGTGGGATTGAAGGTTGTTGA 57.695 42.857 0.00 0.00 0.00 3.18
3630 11207 4.399004 TTTGTGGGATTGAAGGTTGTTG 57.601 40.909 0.00 0.00 0.00 3.33
3631 11208 5.628797 AATTTGTGGGATTGAAGGTTGTT 57.371 34.783 0.00 0.00 0.00 2.83
3632 11209 6.739331 TTAATTTGTGGGATTGAAGGTTGT 57.261 33.333 0.00 0.00 0.00 3.32
3633 11210 7.171337 CACTTTAATTTGTGGGATTGAAGGTTG 59.829 37.037 6.39 0.00 35.56 3.77
3634 11211 7.147567 ACACTTTAATTTGTGGGATTGAAGGTT 60.148 33.333 9.59 0.00 35.56 3.50
3635 11212 6.326323 ACACTTTAATTTGTGGGATTGAAGGT 59.674 34.615 9.59 0.79 35.56 3.50
3636 11213 6.758254 ACACTTTAATTTGTGGGATTGAAGG 58.242 36.000 9.59 0.34 35.56 3.46
3637 11214 7.432869 TGACACTTTAATTTGTGGGATTGAAG 58.567 34.615 9.59 0.00 38.39 3.02
3638 11215 7.353414 TGACACTTTAATTTGTGGGATTGAA 57.647 32.000 9.59 0.00 38.39 2.69
3639 11216 6.968263 TGACACTTTAATTTGTGGGATTGA 57.032 33.333 9.59 0.00 38.39 2.57
3640 11217 8.606040 AAATGACACTTTAATTTGTGGGATTG 57.394 30.769 9.59 0.00 38.39 2.67
3643 11220 9.921637 GATAAAATGACACTTTAATTTGTGGGA 57.078 29.630 0.00 0.00 38.39 4.37
3644 11221 8.859156 CGATAAAATGACACTTTAATTTGTGGG 58.141 33.333 0.00 0.00 38.39 4.61
3645 11222 8.372521 GCGATAAAATGACACTTTAATTTGTGG 58.627 33.333 0.00 0.00 38.39 4.17
3646 11223 8.372521 GGCGATAAAATGACACTTTAATTTGTG 58.627 33.333 0.00 0.00 39.80 3.33
3647 11224 7.544217 GGGCGATAAAATGACACTTTAATTTGT 59.456 33.333 0.00 0.00 0.00 2.83
3648 11225 7.010091 GGGGCGATAAAATGACACTTTAATTTG 59.990 37.037 0.00 0.00 0.00 2.32
3649 11226 7.039270 GGGGCGATAAAATGACACTTTAATTT 58.961 34.615 0.00 0.00 0.00 1.82
3650 11227 6.379988 AGGGGCGATAAAATGACACTTTAATT 59.620 34.615 0.00 0.00 0.00 1.40
3651 11228 5.891551 AGGGGCGATAAAATGACACTTTAAT 59.108 36.000 0.00 0.00 0.00 1.40
3652 11229 5.258051 AGGGGCGATAAAATGACACTTTAA 58.742 37.500 0.00 0.00 0.00 1.52
3653 11230 4.850680 AGGGGCGATAAAATGACACTTTA 58.149 39.130 0.00 0.00 0.00 1.85
3654 11231 3.697166 AGGGGCGATAAAATGACACTTT 58.303 40.909 0.00 0.00 0.00 2.66
3655 11232 3.366052 AGGGGCGATAAAATGACACTT 57.634 42.857 0.00 0.00 0.00 3.16
3656 11233 3.016736 CAAGGGGCGATAAAATGACACT 58.983 45.455 0.00 0.00 0.00 3.55
3657 11234 2.479560 GCAAGGGGCGATAAAATGACAC 60.480 50.000 0.00 0.00 0.00 3.67
3658 11235 1.748493 GCAAGGGGCGATAAAATGACA 59.252 47.619 0.00 0.00 0.00 3.58
3659 11236 1.067060 GGCAAGGGGCGATAAAATGAC 59.933 52.381 0.00 0.00 46.16 3.06
3660 11237 1.398692 GGCAAGGGGCGATAAAATGA 58.601 50.000 0.00 0.00 46.16 2.57
3661 11238 3.965780 GGCAAGGGGCGATAAAATG 57.034 52.632 0.00 0.00 46.16 2.32
3670 11247 2.279037 TAGGATTTCCGGCAAGGGGC 62.279 60.000 0.00 0.00 42.08 5.80
3671 11248 0.465642 GTAGGATTTCCGGCAAGGGG 60.466 60.000 0.00 0.00 42.08 4.79
3672 11249 0.254747 TGTAGGATTTCCGGCAAGGG 59.745 55.000 0.00 0.00 42.08 3.95
3673 11250 2.158755 AGATGTAGGATTTCCGGCAAGG 60.159 50.000 0.00 0.00 42.08 3.61
3674 11251 3.134458 GAGATGTAGGATTTCCGGCAAG 58.866 50.000 0.00 0.00 42.08 4.01
3675 11252 2.503765 TGAGATGTAGGATTTCCGGCAA 59.496 45.455 0.00 0.00 42.08 4.52
3676 11253 2.115427 TGAGATGTAGGATTTCCGGCA 58.885 47.619 0.00 0.00 42.08 5.69
3677 11254 2.910688 TGAGATGTAGGATTTCCGGC 57.089 50.000 0.00 0.00 42.08 6.13
3678 11255 3.615110 CGGATGAGATGTAGGATTTCCGG 60.615 52.174 0.00 0.00 40.78 5.14
3679 11256 3.579709 CGGATGAGATGTAGGATTTCCG 58.420 50.000 0.00 0.00 42.08 4.30
3680 11257 3.578716 TCCGGATGAGATGTAGGATTTCC 59.421 47.826 0.00 0.00 0.00 3.13
3681 11258 4.873746 TCCGGATGAGATGTAGGATTTC 57.126 45.455 0.00 0.00 0.00 2.17
3682 11259 7.502060 AATATCCGGATGAGATGTAGGATTT 57.498 36.000 27.55 0.00 39.07 2.17
3683 11260 7.841729 AGTAATATCCGGATGAGATGTAGGATT 59.158 37.037 27.55 15.67 39.07 3.01
3684 11261 7.358263 AGTAATATCCGGATGAGATGTAGGAT 58.642 38.462 27.55 5.17 40.99 3.24
3685 11262 6.732487 AGTAATATCCGGATGAGATGTAGGA 58.268 40.000 27.55 2.62 0.00 2.94
3686 11263 7.411486 AAGTAATATCCGGATGAGATGTAGG 57.589 40.000 27.55 0.00 0.00 3.18
3689 11266 7.819900 GCTAAAAGTAATATCCGGATGAGATGT 59.180 37.037 27.55 1.29 0.00 3.06
3690 11267 8.037758 AGCTAAAAGTAATATCCGGATGAGATG 58.962 37.037 27.55 7.50 0.00 2.90
3691 11268 8.037758 CAGCTAAAAGTAATATCCGGATGAGAT 58.962 37.037 27.55 9.92 0.00 2.75
3692 11269 7.378966 CAGCTAAAAGTAATATCCGGATGAGA 58.621 38.462 27.55 7.63 0.00 3.27
3693 11270 6.091441 GCAGCTAAAAGTAATATCCGGATGAG 59.909 42.308 27.55 2.05 0.00 2.90
3694 11271 5.932303 GCAGCTAAAAGTAATATCCGGATGA 59.068 40.000 27.55 11.34 0.00 2.92
3695 11272 5.122396 GGCAGCTAAAAGTAATATCCGGATG 59.878 44.000 27.55 7.39 0.00 3.51
3696 11273 5.013183 AGGCAGCTAAAAGTAATATCCGGAT 59.987 40.000 22.95 22.95 0.00 4.18
3697 11274 4.347000 AGGCAGCTAAAAGTAATATCCGGA 59.653 41.667 6.61 6.61 0.00 5.14
3698 11275 4.642429 AGGCAGCTAAAAGTAATATCCGG 58.358 43.478 0.00 0.00 0.00 5.14
3699 11276 5.107453 CGAAGGCAGCTAAAAGTAATATCCG 60.107 44.000 0.00 0.00 0.00 4.18
3700 11277 5.758784 ACGAAGGCAGCTAAAAGTAATATCC 59.241 40.000 0.00 0.00 0.00 2.59
3701 11278 6.846325 ACGAAGGCAGCTAAAAGTAATATC 57.154 37.500 0.00 0.00 0.00 1.63
3742 11319 4.023193 CGTGCACTTACAAGGAAAAGGAAT 60.023 41.667 16.19 0.00 0.00 3.01
3754 11331 1.666700 GGTTTCACACGTGCACTTACA 59.333 47.619 17.22 0.00 0.00 2.41
3764 11341 5.921976 TGTACTACACATAAGGTTTCACACG 59.078 40.000 0.00 0.00 30.04 4.49
3790 11367 0.790207 GTACACACCATGCGTCACAG 59.210 55.000 0.00 0.00 0.00 3.66
3801 11378 9.450807 GCATAATATTTGATCAAAGTACACACC 57.549 33.333 24.17 7.43 33.32 4.16
3882 11462 1.964223 TGTCTGGTCTTCTGTCTGGTC 59.036 52.381 0.00 0.00 0.00 4.02
3883 11463 2.088104 TGTCTGGTCTTCTGTCTGGT 57.912 50.000 0.00 0.00 0.00 4.00
3884 11464 2.630098 TCTTGTCTGGTCTTCTGTCTGG 59.370 50.000 0.00 0.00 0.00 3.86
3885 11465 3.068732 TGTCTTGTCTGGTCTTCTGTCTG 59.931 47.826 0.00 0.00 0.00 3.51
3886 11466 3.300388 TGTCTTGTCTGGTCTTCTGTCT 58.700 45.455 0.00 0.00 0.00 3.41
3887 11467 3.735237 TGTCTTGTCTGGTCTTCTGTC 57.265 47.619 0.00 0.00 0.00 3.51
3888 11468 3.742640 GCTTGTCTTGTCTGGTCTTCTGT 60.743 47.826 0.00 0.00 0.00 3.41
3889 11469 2.805099 GCTTGTCTTGTCTGGTCTTCTG 59.195 50.000 0.00 0.00 0.00 3.02
3890 11470 2.703007 AGCTTGTCTTGTCTGGTCTTCT 59.297 45.455 0.00 0.00 0.00 2.85
3891 11471 3.118905 AGCTTGTCTTGTCTGGTCTTC 57.881 47.619 0.00 0.00 0.00 2.87
3892 11472 3.388024 TGTAGCTTGTCTTGTCTGGTCTT 59.612 43.478 0.00 0.00 0.00 3.01
3893 11473 2.965831 TGTAGCTTGTCTTGTCTGGTCT 59.034 45.455 0.00 0.00 0.00 3.85
3968 11548 3.258123 TCAATCTGGTGAGAATGTCGACA 59.742 43.478 22.48 22.48 31.81 4.35
4034 11614 1.033746 ATGCCAGTGGGAATTCAGCG 61.034 55.000 7.73 0.00 35.59 5.18
4234 11822 2.094494 GTGTCGAATCTCTTCAGCCTCA 60.094 50.000 0.00 0.00 0.00 3.86
4240 11828 3.305964 GACGTTGTGTCGAATCTCTTCA 58.694 45.455 0.00 0.00 37.96 3.02
4256 11844 4.430765 CGCTGCCGGTAGGACGTT 62.431 66.667 21.82 0.00 41.02 3.99
4458 12053 9.737844 AAGATGCAAAATTATTGTGGGTTTATT 57.262 25.926 0.00 0.00 0.00 1.40
4478 12073 6.917217 ACAGACTGAAGCTAATAAAGATGC 57.083 37.500 10.08 0.00 0.00 3.91
4497 12092 1.405872 ACACAGTGGAACGGTACAGA 58.594 50.000 5.31 0.00 45.56 3.41
4571 12256 6.618287 TTTGGAGTTGTATTCACAAGACAG 57.382 37.500 0.00 0.00 45.18 3.51
4747 12440 2.426024 CCATGTGATCTTTCAAGCCAGG 59.574 50.000 0.00 0.00 32.48 4.45
4751 12444 5.009310 TGCATATCCATGTGATCTTTCAAGC 59.991 40.000 0.00 0.00 34.76 4.01
4815 15851 7.170998 CGGCTTATAGATGTACCTGTTAAAAGG 59.829 40.741 10.41 10.41 43.57 3.11
4979 16023 7.779326 TCAATGACATATTAATCTTCTTGGGCA 59.221 33.333 0.00 0.00 0.00 5.36
4996 16040 5.941647 TGTGATCATGACAACTCAATGACAT 59.058 36.000 0.00 0.00 36.39 3.06
4997 16041 5.307204 TGTGATCATGACAACTCAATGACA 58.693 37.500 0.00 0.00 0.00 3.58
5006 16050 2.421424 GAGCCCTTGTGATCATGACAAC 59.579 50.000 0.00 0.00 0.00 3.32
5027 16071 7.331687 GGATAAAACACCACTTCAATTGATTGG 59.668 37.037 25.09 25.09 38.30 3.16
5174 17041 6.556212 TGTTGTTGATGTGTTGAATTTACGT 58.444 32.000 0.00 0.00 0.00 3.57
5286 17157 1.967319 TGGAAGGAGTTGTTGAGCAC 58.033 50.000 0.00 0.00 0.00 4.40
5343 17214 5.854866 CGATTTATACTTCAAGACGCCGATA 59.145 40.000 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.