Multiple sequence alignment - TraesCS6D01G061300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G061300 chr6D 100.000 2617 0 0 1 2617 28687014 28689630 0.000000e+00 4833
1 TraesCS6D01G061300 chr6D 85.502 807 65 32 1057 1822 29391941 29391146 0.000000e+00 795
2 TraesCS6D01G061300 chr6D 79.677 310 36 18 2228 2524 29389904 29389609 5.710000e-47 198
3 TraesCS6D01G061300 chr6A 85.917 845 71 37 816 1639 33964415 33963598 0.000000e+00 857
4 TraesCS6D01G061300 chr6A 90.492 589 29 14 1057 1623 33001547 33002130 0.000000e+00 752
5 TraesCS6D01G061300 chr6A 75.726 1067 117 54 1620 2617 33963038 33962045 3.140000e-109 405
6 TraesCS6D01G061300 chr6A 80.272 294 31 15 2244 2524 33003205 33003484 2.050000e-46 196
7 TraesCS6D01G061300 chr6A 94.068 118 6 1 664 781 475435163 475435047 7.440000e-41 178
8 TraesCS6D01G061300 chr6B 96.560 436 15 0 1052 1487 61796064 61795629 0.000000e+00 723
9 TraesCS6D01G061300 chr6B 96.897 419 13 0 1057 1475 58777809 58778227 0.000000e+00 702
10 TraesCS6D01G061300 chr6B 87.646 599 46 20 1058 1639 59026383 59026970 0.000000e+00 671
11 TraesCS6D01G061300 chr6B 76.952 807 102 50 1556 2349 58778371 58779106 1.470000e-102 383
12 TraesCS6D01G061300 chr6B 87.097 310 33 3 1556 1863 61795496 61795192 6.930000e-91 344
13 TraesCS6D01G061300 chr6B 80.082 487 75 17 129 601 61796875 61796397 2.490000e-90 342
14 TraesCS6D01G061300 chr6B 84.249 273 20 4 2365 2617 58311378 58311647 7.230000e-61 244
15 TraesCS6D01G061300 chr6B 90.323 124 11 1 1866 1988 464575011 464574888 7.500000e-36 161
16 TraesCS6D01G061300 chr6B 92.793 111 8 0 1878 1988 577618602 577618712 7.500000e-36 161
17 TraesCS6D01G061300 chr6B 90.698 86 6 1 1556 1639 58310559 58310644 2.130000e-21 113
18 TraesCS6D01G061300 chr4A 95.704 419 18 0 1053 1471 23611226 23610808 0.000000e+00 675
19 TraesCS6D01G061300 chr1D 85.888 659 61 18 823 1471 321640445 321641081 0.000000e+00 673
20 TraesCS6D01G061300 chr1D 82.883 222 22 10 2181 2402 408519635 408519430 4.450000e-43 185
21 TraesCS6D01G061300 chr1D 96.396 111 4 0 663 773 5428004 5428114 1.600000e-42 183
22 TraesCS6D01G061300 chr1D 94.118 119 7 0 654 772 227655300 227655418 5.750000e-42 182
23 TraesCS6D01G061300 chr1D 73.333 525 84 37 1570 2060 466081926 466081424 2.710000e-30 143
24 TraesCS6D01G061300 chr4D 94.872 429 19 3 1047 1475 444177278 444177703 0.000000e+00 667
25 TraesCS6D01G061300 chr4D 82.883 222 22 10 2181 2402 486438564 486438769 4.450000e-43 185
26 TraesCS6D01G061300 chr1A 90.837 502 35 9 972 1471 468599278 468598786 0.000000e+00 662
27 TraesCS6D01G061300 chr4B 94.595 185 10 0 1943 2127 644837549 644837733 1.190000e-73 287
28 TraesCS6D01G061300 chr4B 93.514 185 11 1 1943 2127 624108072 624108255 9.230000e-70 274
29 TraesCS6D01G061300 chr4B 94.595 111 6 0 1878 1988 97763061 97762951 3.460000e-39 172
30 TraesCS6D01G061300 chrUn 77.528 445 51 19 2105 2524 112593084 112592664 3.390000e-54 222
31 TraesCS6D01G061300 chr3B 94.203 138 8 0 1946 2083 238063762 238063625 7.340000e-51 211
32 TraesCS6D01G061300 chr3B 77.064 218 30 17 1435 1639 800629090 800628880 9.900000e-20 108
33 TraesCS6D01G061300 chr2B 79.012 324 37 13 2138 2440 611069824 611069511 2.660000e-45 193
34 TraesCS6D01G061300 chr2B 95.575 113 5 0 659 771 612680046 612680158 5.750000e-42 182
35 TraesCS6D01G061300 chr2B 91.406 128 9 1 644 771 391899695 391899820 9.630000e-40 174
36 TraesCS6D01G061300 chr2B 93.694 111 7 0 1878 1988 765129931 765129821 1.610000e-37 167
37 TraesCS6D01G061300 chr2B 73.137 510 81 38 1563 2038 2243947 2243460 5.880000e-27 132
38 TraesCS6D01G061300 chr3D 98.131 107 2 0 665 771 435646743 435646849 1.240000e-43 187
39 TraesCS6D01G061300 chr3D 73.333 525 85 37 1570 2060 19667309 19666806 2.710000e-30 143
40 TraesCS6D01G061300 chr5B 96.429 112 4 0 661 772 281433782 281433893 4.450000e-43 185
41 TraesCS6D01G061300 chr5B 94.595 111 6 0 1878 1988 61757905 61758015 3.460000e-39 172
42 TraesCS6D01G061300 chr1B 97.248 109 3 0 664 772 624663026 624662918 4.450000e-43 185
43 TraesCS6D01G061300 chr1B 95.413 109 5 0 663 771 434189014 434188906 9.630000e-40 174
44 TraesCS6D01G061300 chr2A 78.019 323 40 13 2138 2440 662973150 662972839 9.630000e-40 174
45 TraesCS6D01G061300 chr2A 78.019 323 40 13 2138 2440 663304922 663304611 9.630000e-40 174
46 TraesCS6D01G061300 chr5D 90.991 111 10 0 1878 1988 484041426 484041316 1.620000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G061300 chr6D 28687014 28689630 2616 False 4833.000000 4833 100.0000 1 2617 1 chr6D.!!$F1 2616
1 TraesCS6D01G061300 chr6D 29389609 29391941 2332 True 496.500000 795 82.5895 1057 2524 2 chr6D.!!$R1 1467
2 TraesCS6D01G061300 chr6A 33962045 33964415 2370 True 631.000000 857 80.8215 816 2617 2 chr6A.!!$R2 1801
3 TraesCS6D01G061300 chr6A 33001547 33003484 1937 False 474.000000 752 85.3820 1057 2524 2 chr6A.!!$F1 1467
4 TraesCS6D01G061300 chr6B 59026383 59026970 587 False 671.000000 671 87.6460 1058 1639 1 chr6B.!!$F1 581
5 TraesCS6D01G061300 chr6B 58777809 58779106 1297 False 542.500000 702 86.9245 1057 2349 2 chr6B.!!$F4 1292
6 TraesCS6D01G061300 chr6B 61795192 61796875 1683 True 469.666667 723 87.9130 129 1863 3 chr6B.!!$R2 1734
7 TraesCS6D01G061300 chr1D 321640445 321641081 636 False 673.000000 673 85.8880 823 1471 1 chr1D.!!$F3 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 403 0.032815 TTCATTCGTGACCGTGCTCA 59.967 50.0 0.0 0.0 35.01 4.26 F
985 1083 0.033991 TCTCTTCCTCCTCCACTCCG 60.034 60.0 0.0 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1453 1564 0.030603 CTTAGGCCCTCTCTCCCCTT 60.031 60.0 0.0 0.0 0.0 3.95 R
2404 4397 0.250295 TTCACTGAAGCTGGAACCCG 60.250 55.0 0.0 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.609046 AGGACTAGACATGGCACCC 58.391 57.895 0.00 0.00 0.00 4.61
19 20 0.983378 AGGACTAGACATGGCACCCC 60.983 60.000 0.00 0.00 0.00 4.95
20 21 1.527370 GACTAGACATGGCACCCCC 59.473 63.158 0.00 0.00 0.00 5.40
42 43 2.032528 CGCAGCCCTGTTTCTCCA 59.967 61.111 0.00 0.00 0.00 3.86
43 44 1.377725 CGCAGCCCTGTTTCTCCAT 60.378 57.895 0.00 0.00 0.00 3.41
44 45 1.372087 CGCAGCCCTGTTTCTCCATC 61.372 60.000 0.00 0.00 0.00 3.51
45 46 1.372087 GCAGCCCTGTTTCTCCATCG 61.372 60.000 0.00 0.00 0.00 3.84
46 47 0.036010 CAGCCCTGTTTCTCCATCGT 60.036 55.000 0.00 0.00 0.00 3.73
47 48 0.693049 AGCCCTGTTTCTCCATCGTT 59.307 50.000 0.00 0.00 0.00 3.85
48 49 0.804989 GCCCTGTTTCTCCATCGTTG 59.195 55.000 0.00 0.00 0.00 4.10
49 50 1.453155 CCCTGTTTCTCCATCGTTGG 58.547 55.000 6.15 6.15 45.15 3.77
50 51 1.271379 CCCTGTTTCTCCATCGTTGGT 60.271 52.381 12.19 0.00 44.06 3.67
51 52 2.504367 CCTGTTTCTCCATCGTTGGTT 58.496 47.619 12.19 0.00 44.06 3.67
52 53 2.484264 CCTGTTTCTCCATCGTTGGTTC 59.516 50.000 12.19 1.59 44.06 3.62
53 54 3.403038 CTGTTTCTCCATCGTTGGTTCT 58.597 45.455 12.19 0.00 44.06 3.01
54 55 3.399330 TGTTTCTCCATCGTTGGTTCTC 58.601 45.455 12.19 2.49 44.06 2.87
55 56 3.181459 TGTTTCTCCATCGTTGGTTCTCA 60.181 43.478 12.19 4.73 44.06 3.27
56 57 3.981071 TTCTCCATCGTTGGTTCTCAT 57.019 42.857 12.19 0.00 44.06 2.90
57 58 3.526931 TCTCCATCGTTGGTTCTCATC 57.473 47.619 12.19 0.00 44.06 2.92
58 59 2.168521 TCTCCATCGTTGGTTCTCATCC 59.831 50.000 12.19 0.00 44.06 3.51
59 60 1.209504 TCCATCGTTGGTTCTCATCCC 59.790 52.381 12.19 0.00 44.06 3.85
60 61 1.065491 CCATCGTTGGTTCTCATCCCA 60.065 52.381 4.23 0.00 38.30 4.37
61 62 2.617788 CCATCGTTGGTTCTCATCCCAA 60.618 50.000 4.23 0.00 38.30 4.12
62 63 2.940994 TCGTTGGTTCTCATCCCAAA 57.059 45.000 0.00 0.00 42.12 3.28
63 64 3.216187 TCGTTGGTTCTCATCCCAAAA 57.784 42.857 0.00 0.00 42.12 2.44
64 65 3.556999 TCGTTGGTTCTCATCCCAAAAA 58.443 40.909 0.00 0.00 42.12 1.94
65 66 3.568007 TCGTTGGTTCTCATCCCAAAAAG 59.432 43.478 0.00 0.00 42.12 2.27
66 67 3.653344 GTTGGTTCTCATCCCAAAAAGC 58.347 45.455 0.00 0.00 42.12 3.51
67 68 1.885887 TGGTTCTCATCCCAAAAAGCG 59.114 47.619 0.00 0.00 0.00 4.68
68 69 2.159382 GGTTCTCATCCCAAAAAGCGA 58.841 47.619 0.00 0.00 0.00 4.93
69 70 2.556622 GGTTCTCATCCCAAAAAGCGAA 59.443 45.455 0.00 0.00 0.00 4.70
70 71 3.366374 GGTTCTCATCCCAAAAAGCGAAG 60.366 47.826 0.00 0.00 0.00 3.79
71 72 2.436417 TCTCATCCCAAAAAGCGAAGG 58.564 47.619 0.00 0.00 0.00 3.46
72 73 2.162681 CTCATCCCAAAAAGCGAAGGT 58.837 47.619 0.00 0.00 44.60 3.50
73 74 1.885887 TCATCCCAAAAAGCGAAGGTG 59.114 47.619 0.00 0.00 39.47 4.00
74 75 0.603065 ATCCCAAAAAGCGAAGGTGC 59.397 50.000 0.00 0.00 39.47 5.01
75 76 0.753479 TCCCAAAAAGCGAAGGTGCA 60.753 50.000 0.00 0.00 39.47 4.57
76 77 0.103937 CCCAAAAAGCGAAGGTGCAA 59.896 50.000 0.00 0.00 39.47 4.08
77 78 1.270252 CCCAAAAAGCGAAGGTGCAAT 60.270 47.619 0.00 0.00 39.47 3.56
78 79 2.482864 CCAAAAAGCGAAGGTGCAATT 58.517 42.857 0.00 0.00 39.47 2.32
79 80 2.476241 CCAAAAAGCGAAGGTGCAATTC 59.524 45.455 0.00 0.00 39.47 2.17
80 81 2.438868 AAAAGCGAAGGTGCAATTCC 57.561 45.000 7.20 0.00 39.47 3.01
81 82 0.240945 AAAGCGAAGGTGCAATTCCG 59.759 50.000 7.20 2.17 39.47 4.30
82 83 0.605319 AAGCGAAGGTGCAATTCCGA 60.605 50.000 7.20 0.00 39.47 4.55
83 84 1.134694 GCGAAGGTGCAATTCCGAC 59.865 57.895 7.20 0.00 34.15 4.79
84 85 1.419922 CGAAGGTGCAATTCCGACG 59.580 57.895 7.20 4.05 0.00 5.12
85 86 1.794222 GAAGGTGCAATTCCGACGG 59.206 57.895 7.84 7.84 0.00 4.79
86 87 1.644786 GAAGGTGCAATTCCGACGGG 61.645 60.000 15.25 0.00 0.00 5.28
87 88 2.046700 GGTGCAATTCCGACGGGA 60.047 61.111 15.25 5.39 41.83 5.14
88 89 1.451387 GGTGCAATTCCGACGGGAT 60.451 57.895 15.25 8.26 43.41 3.85
89 90 1.436983 GGTGCAATTCCGACGGGATC 61.437 60.000 15.25 0.00 43.41 3.36
90 91 0.462047 GTGCAATTCCGACGGGATCT 60.462 55.000 15.25 0.00 43.41 2.75
91 92 0.461870 TGCAATTCCGACGGGATCTG 60.462 55.000 15.25 12.62 43.41 2.90
92 93 0.179084 GCAATTCCGACGGGATCTGA 60.179 55.000 15.25 0.00 43.41 3.27
93 94 1.571919 CAATTCCGACGGGATCTGAC 58.428 55.000 15.25 0.00 43.41 3.51
94 95 1.134818 CAATTCCGACGGGATCTGACA 60.135 52.381 15.25 0.00 43.41 3.58
95 96 1.191535 ATTCCGACGGGATCTGACAA 58.808 50.000 15.25 0.00 43.41 3.18
96 97 0.970640 TTCCGACGGGATCTGACAAA 59.029 50.000 15.25 0.00 43.41 2.83
97 98 0.970640 TCCGACGGGATCTGACAAAA 59.029 50.000 15.25 0.00 37.43 2.44
98 99 1.345089 TCCGACGGGATCTGACAAAAA 59.655 47.619 15.25 0.00 37.43 1.94
115 116 3.957383 AAAAATGACACACGCACCC 57.043 47.368 0.00 0.00 0.00 4.61
116 117 1.107114 AAAAATGACACACGCACCCA 58.893 45.000 0.00 0.00 0.00 4.51
117 118 1.327303 AAAATGACACACGCACCCAT 58.673 45.000 0.00 0.00 0.00 4.00
118 119 0.597568 AAATGACACACGCACCCATG 59.402 50.000 0.00 0.00 0.00 3.66
119 120 1.243342 AATGACACACGCACCCATGG 61.243 55.000 4.14 4.14 0.00 3.66
120 121 2.281484 GACACACGCACCCATGGT 60.281 61.111 11.73 0.00 35.62 3.55
121 122 1.896660 GACACACGCACCCATGGTT 60.897 57.895 11.73 0.00 31.02 3.67
122 123 1.452145 GACACACGCACCCATGGTTT 61.452 55.000 11.73 0.00 31.02 3.27
123 124 1.285641 CACACGCACCCATGGTTTC 59.714 57.895 11.73 0.00 31.02 2.78
124 125 1.901464 ACACGCACCCATGGTTTCC 60.901 57.895 11.73 0.00 31.02 3.13
125 126 1.603455 CACGCACCCATGGTTTCCT 60.603 57.895 11.73 0.00 31.02 3.36
126 127 1.303317 ACGCACCCATGGTTTCCTC 60.303 57.895 11.73 0.00 31.02 3.71
127 128 2.046285 CGCACCCATGGTTTCCTCC 61.046 63.158 11.73 0.00 31.02 4.30
135 136 2.434359 GGTTTCCTCCGTGCCGAG 60.434 66.667 0.00 0.00 0.00 4.63
144 145 4.039357 CGTGCCGAGGACTGTCGT 62.039 66.667 2.15 2.15 38.32 4.34
163 164 2.741092 GGAGTGGGTGAGTTGCGA 59.259 61.111 0.00 0.00 0.00 5.10
173 174 2.354305 AGTTGCGACGTGACCGAC 60.354 61.111 0.00 0.00 37.88 4.79
192 193 1.338973 ACGTCGTTTTCTCCACTAGCA 59.661 47.619 0.00 0.00 0.00 3.49
195 196 2.157863 GTCGTTTTCTCCACTAGCAAGC 59.842 50.000 0.00 0.00 0.00 4.01
200 201 4.096003 TCCACTAGCAAGCCCGGC 62.096 66.667 0.00 0.00 0.00 6.13
215 217 1.436983 CCGGCGAGCCCTTTGTTATC 61.437 60.000 9.30 0.00 0.00 1.75
218 220 2.014594 CGAGCCCTTTGTTATCGGC 58.985 57.895 0.00 0.00 41.96 5.54
236 238 2.993853 GCTCCTCTCCACCTTGGG 59.006 66.667 0.00 0.00 38.32 4.12
237 239 2.674220 GCTCCTCTCCACCTTGGGG 61.674 68.421 0.00 0.00 40.17 4.96
240 242 3.732849 CTCTCCACCTTGGGGCCC 61.733 72.222 18.17 18.17 38.12 5.80
321 323 3.948719 TGGTGGTGAGAACCCGGC 61.949 66.667 0.00 0.00 36.83 6.13
322 324 3.948719 GGTGGTGAGAACCCGGCA 61.949 66.667 0.00 0.00 0.00 5.69
338 340 1.598130 GCACTTCGGCCAGTCTTGT 60.598 57.895 2.24 0.00 0.00 3.16
339 341 1.166531 GCACTTCGGCCAGTCTTGTT 61.167 55.000 2.24 0.00 0.00 2.83
344 346 2.341846 TCGGCCAGTCTTGTTCTTTT 57.658 45.000 2.24 0.00 0.00 2.27
354 356 2.828520 TCTTGTTCTTTTGTGTGGGCAA 59.171 40.909 0.00 0.00 0.00 4.52
355 357 2.663826 TGTTCTTTTGTGTGGGCAAC 57.336 45.000 0.00 0.00 0.00 4.17
361 363 1.261480 TTTGTGTGGGCAACTGTTGT 58.739 45.000 20.57 0.00 0.00 3.32
362 364 1.261480 TTGTGTGGGCAACTGTTGTT 58.739 45.000 20.57 0.00 36.75 2.83
367 369 3.058224 GTGTGGGCAACTGTTGTTCTATC 60.058 47.826 20.57 4.01 33.52 2.08
368 370 3.181445 TGTGGGCAACTGTTGTTCTATCT 60.181 43.478 20.57 0.00 33.52 1.98
383 385 4.574674 TCTATCTGTGCCATGGTTTCTT 57.425 40.909 14.67 0.00 0.00 2.52
385 387 2.655090 TCTGTGCCATGGTTTCTTCA 57.345 45.000 14.67 0.00 0.00 3.02
394 396 3.119849 CCATGGTTTCTTCATTCGTGACC 60.120 47.826 2.57 0.00 0.00 4.02
396 398 2.140717 GGTTTCTTCATTCGTGACCGT 58.859 47.619 0.00 0.00 35.01 4.83
401 403 0.032815 TTCATTCGTGACCGTGCTCA 59.967 50.000 0.00 0.00 35.01 4.26
402 404 0.032815 TCATTCGTGACCGTGCTCAA 59.967 50.000 0.00 0.00 35.01 3.02
405 407 0.874175 TTCGTGACCGTGCTCAACAG 60.874 55.000 0.00 0.00 35.01 3.16
415 417 3.003689 CCGTGCTCAACAGTTTTCATCTT 59.996 43.478 0.00 0.00 0.00 2.40
417 419 3.732721 GTGCTCAACAGTTTTCATCTTGC 59.267 43.478 0.00 0.00 0.00 4.01
418 420 3.243501 TGCTCAACAGTTTTCATCTTGCC 60.244 43.478 0.00 0.00 0.00 4.52
429 431 3.066291 TCATCTTGCCGTGTGGTTAAT 57.934 42.857 0.00 0.00 37.67 1.40
432 434 1.072489 TCTTGCCGTGTGGTTAATCCA 59.928 47.619 0.00 0.00 45.01 3.41
444 446 1.531149 GTTAATCCATGGATGCCGACG 59.469 52.381 27.97 0.00 34.70 5.12
446 448 0.532862 AATCCATGGATGCCGACGTC 60.533 55.000 27.97 5.18 34.70 4.34
447 449 1.402896 ATCCATGGATGCCGACGTCT 61.403 55.000 26.78 0.00 32.98 4.18
448 450 1.884464 CCATGGATGCCGACGTCTG 60.884 63.158 14.70 8.48 32.02 3.51
452 454 0.108992 TGGATGCCGACGTCTGTAAC 60.109 55.000 14.70 5.38 32.02 2.50
453 455 0.172803 GGATGCCGACGTCTGTAACT 59.827 55.000 14.70 0.00 32.02 2.24
454 456 1.546834 GATGCCGACGTCTGTAACTC 58.453 55.000 14.70 0.00 0.00 3.01
455 457 1.132643 GATGCCGACGTCTGTAACTCT 59.867 52.381 14.70 0.00 0.00 3.24
456 458 0.240145 TGCCGACGTCTGTAACTCTG 59.760 55.000 14.70 0.00 0.00 3.35
457 459 0.240411 GCCGACGTCTGTAACTCTGT 59.760 55.000 14.70 0.00 0.00 3.41
458 460 1.335689 GCCGACGTCTGTAACTCTGTT 60.336 52.381 14.70 0.00 0.00 3.16
459 461 2.861360 GCCGACGTCTGTAACTCTGTTT 60.861 50.000 14.70 0.00 0.00 2.83
464 475 5.220340 CGACGTCTGTAACTCTGTTTTGTTT 60.220 40.000 14.70 0.00 0.00 2.83
473 484 6.921332 AACTCTGTTTTGTTTGTAAACGTG 57.079 33.333 0.00 0.00 41.74 4.49
504 516 4.049186 GGGTGATGCTAGTGTACAATACG 58.951 47.826 0.00 0.00 0.00 3.06
509 521 4.895224 TGCTAGTGTACAATACGAGAGG 57.105 45.455 0.00 0.00 0.00 3.69
518 530 1.135373 CAATACGAGAGGAGTGCGTGT 60.135 52.381 0.00 0.00 38.84 4.49
531 544 5.009610 AGGAGTGCGTGTCAAAAATACAAAT 59.990 36.000 0.00 0.00 0.00 2.32
579 592 3.441572 GCACAAACATACTCCTGCAAGAT 59.558 43.478 0.00 0.00 34.07 2.40
584 597 3.866651 ACATACTCCTGCAAGATGACAC 58.133 45.455 0.00 0.00 34.07 3.67
591 604 0.671472 TGCAAGATGACACGAGCCAG 60.671 55.000 0.00 0.00 0.00 4.85
603 616 2.587574 GAGCCAGCTCGAATTCTCG 58.412 57.895 3.49 0.00 46.87 4.04
618 631 6.695292 GAATTCTCGAACATGCACAAAATT 57.305 33.333 0.00 0.00 0.00 1.82
619 632 6.456447 AATTCTCGAACATGCACAAAATTG 57.544 33.333 0.00 0.00 0.00 2.32
620 633 4.566545 TCTCGAACATGCACAAAATTGT 57.433 36.364 0.00 0.00 43.36 2.71
630 643 1.686355 ACAAAATTGTGCAGGGACGA 58.314 45.000 0.00 0.00 40.49 4.20
631 644 1.336755 ACAAAATTGTGCAGGGACGAC 59.663 47.619 0.00 0.00 40.49 4.34
632 645 1.608590 CAAAATTGTGCAGGGACGACT 59.391 47.619 0.00 0.00 0.00 4.18
633 646 1.523758 AAATTGTGCAGGGACGACTC 58.476 50.000 0.00 0.00 0.00 3.36
634 647 0.396435 AATTGTGCAGGGACGACTCA 59.604 50.000 0.00 0.00 0.00 3.41
635 648 0.320771 ATTGTGCAGGGACGACTCAC 60.321 55.000 0.00 0.00 0.00 3.51
639 652 2.176055 CAGGGACGACTCACGACG 59.824 66.667 0.00 0.00 45.77 5.12
644 657 1.134901 GACGACTCACGACGAGCAT 59.865 57.895 0.00 0.00 46.63 3.79
645 658 1.128724 GACGACTCACGACGAGCATG 61.129 60.000 0.00 0.00 46.63 4.06
649 662 0.109086 ACTCACGACGAGCATGAAGG 60.109 55.000 0.00 0.00 46.63 3.46
658 671 1.760192 GAGCATGAAGGGAGTTGCAT 58.240 50.000 0.00 0.00 37.56 3.96
660 673 0.743097 GCATGAAGGGAGTTGCATCC 59.257 55.000 0.00 0.00 38.76 3.51
661 674 1.956636 GCATGAAGGGAGTTGCATCCA 60.957 52.381 8.58 0.00 41.52 3.41
664 677 1.425066 TGAAGGGAGTTGCATCCAAGT 59.575 47.619 8.58 0.00 41.52 3.16
665 678 2.642311 TGAAGGGAGTTGCATCCAAGTA 59.358 45.455 8.58 0.00 41.52 2.24
666 679 2.789409 AGGGAGTTGCATCCAAGTAC 57.211 50.000 8.58 0.00 41.52 2.73
667 680 2.269940 AGGGAGTTGCATCCAAGTACT 58.730 47.619 8.58 0.00 41.52 2.73
668 681 2.237392 AGGGAGTTGCATCCAAGTACTC 59.763 50.000 8.58 6.32 41.52 2.59
669 682 2.633488 GGAGTTGCATCCAAGTACTCC 58.367 52.381 14.10 14.10 39.34 3.85
670 683 2.633488 GAGTTGCATCCAAGTACTCCC 58.367 52.381 0.00 0.00 34.81 4.30
671 684 2.237392 GAGTTGCATCCAAGTACTCCCT 59.763 50.000 0.00 0.00 34.81 4.20
672 685 2.237392 AGTTGCATCCAAGTACTCCCTC 59.763 50.000 0.00 0.00 32.93 4.30
673 686 1.204146 TGCATCCAAGTACTCCCTCC 58.796 55.000 0.00 0.00 0.00 4.30
674 687 0.105039 GCATCCAAGTACTCCCTCCG 59.895 60.000 0.00 0.00 0.00 4.63
675 688 1.486211 CATCCAAGTACTCCCTCCGT 58.514 55.000 0.00 0.00 0.00 4.69
676 689 1.831736 CATCCAAGTACTCCCTCCGTT 59.168 52.381 0.00 0.00 0.00 4.44
677 690 2.019807 TCCAAGTACTCCCTCCGTTT 57.980 50.000 0.00 0.00 0.00 3.60
678 691 1.897802 TCCAAGTACTCCCTCCGTTTC 59.102 52.381 0.00 0.00 0.00 2.78
679 692 1.621814 CCAAGTACTCCCTCCGTTTCA 59.378 52.381 0.00 0.00 0.00 2.69
680 693 2.038033 CCAAGTACTCCCTCCGTTTCAA 59.962 50.000 0.00 0.00 0.00 2.69
681 694 3.495453 CCAAGTACTCCCTCCGTTTCAAA 60.495 47.826 0.00 0.00 0.00 2.69
682 695 4.324267 CAAGTACTCCCTCCGTTTCAAAT 58.676 43.478 0.00 0.00 0.00 2.32
683 696 4.635699 AGTACTCCCTCCGTTTCAAATT 57.364 40.909 0.00 0.00 0.00 1.82
684 697 5.750352 AGTACTCCCTCCGTTTCAAATTA 57.250 39.130 0.00 0.00 0.00 1.40
685 698 5.485620 AGTACTCCCTCCGTTTCAAATTAC 58.514 41.667 0.00 0.00 0.00 1.89
686 699 4.635699 ACTCCCTCCGTTTCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
687 700 4.576879 ACTCCCTCCGTTTCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
688 701 3.592059 TCCCTCCGTTTCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
689 702 3.007182 TCCCTCCGTTTCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
690 703 3.370061 CCCTCCGTTTCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
691 704 3.060363 CCTCCGTTTCAAATTACTCGTCG 59.940 47.826 0.00 0.00 0.00 5.12
692 705 2.409378 TCCGTTTCAAATTACTCGTCGC 59.591 45.455 0.00 0.00 0.00 5.19
693 706 2.410730 CCGTTTCAAATTACTCGTCGCT 59.589 45.455 0.00 0.00 0.00 4.93
694 707 3.395671 CGTTTCAAATTACTCGTCGCTG 58.604 45.455 0.00 0.00 0.00 5.18
695 708 3.120616 CGTTTCAAATTACTCGTCGCTGA 59.879 43.478 0.00 0.00 0.00 4.26
696 709 4.375606 CGTTTCAAATTACTCGTCGCTGAA 60.376 41.667 0.00 0.00 0.00 3.02
697 710 5.437263 GTTTCAAATTACTCGTCGCTGAAA 58.563 37.500 0.00 0.00 0.00 2.69
698 711 5.856126 TTCAAATTACTCGTCGCTGAAAT 57.144 34.783 0.00 0.00 0.00 2.17
699 712 5.203358 TCAAATTACTCGTCGCTGAAATG 57.797 39.130 0.00 0.00 0.00 2.32
700 713 4.092821 TCAAATTACTCGTCGCTGAAATGG 59.907 41.667 0.00 0.00 0.00 3.16
701 714 3.520290 ATTACTCGTCGCTGAAATGGA 57.480 42.857 0.00 0.00 0.00 3.41
702 715 3.520290 TTACTCGTCGCTGAAATGGAT 57.480 42.857 0.00 0.00 0.00 3.41
703 716 1.645034 ACTCGTCGCTGAAATGGATG 58.355 50.000 0.00 0.00 0.00 3.51
704 717 1.066858 ACTCGTCGCTGAAATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
705 718 2.165641 ACTCGTCGCTGAAATGGATGTA 59.834 45.455 0.00 0.00 0.00 2.29
706 719 3.181475 ACTCGTCGCTGAAATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
707 720 3.381045 TCGTCGCTGAAATGGATGTATC 58.619 45.455 0.00 0.00 0.00 2.24
708 721 3.068165 TCGTCGCTGAAATGGATGTATCT 59.932 43.478 0.00 0.00 0.00 1.98
709 722 4.277423 TCGTCGCTGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 0.00 1.98
710 723 4.618912 CGTCGCTGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 0.00 2.43
711 724 5.562890 CGTCGCTGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 0.00 2.43
712 725 6.216569 GTCGCTGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 0.00 2.10
713 726 6.144724 GTCGCTGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 0.00 3.01
714 727 6.040955 TCGCTGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
715 728 7.230712 TCGCTGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
716 729 7.867909 CGCTGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
717 730 9.547753 GCTGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
741 754 8.418597 AAATACATCTAGGTACATCCATACGT 57.581 34.615 0.00 0.00 39.02 3.57
742 755 5.707242 ACATCTAGGTACATCCATACGTG 57.293 43.478 0.00 0.00 39.02 4.49
743 756 4.022242 ACATCTAGGTACATCCATACGTGC 60.022 45.833 0.00 0.00 39.02 5.34
744 757 2.551032 TCTAGGTACATCCATACGTGCG 59.449 50.000 0.00 0.00 39.02 5.34
745 758 1.395635 AGGTACATCCATACGTGCGA 58.604 50.000 0.00 0.00 39.02 5.10
746 759 1.066605 AGGTACATCCATACGTGCGAC 59.933 52.381 0.00 0.00 39.02 5.19
747 760 1.202325 GGTACATCCATACGTGCGACA 60.202 52.381 0.00 0.00 35.97 4.35
748 761 2.532235 GTACATCCATACGTGCGACAA 58.468 47.619 0.00 0.00 0.00 3.18
749 762 1.640428 ACATCCATACGTGCGACAAG 58.360 50.000 0.00 0.00 0.00 3.16
750 763 1.067142 ACATCCATACGTGCGACAAGT 60.067 47.619 0.00 0.00 0.00 3.16
751 764 2.164827 ACATCCATACGTGCGACAAGTA 59.835 45.455 0.00 7.72 33.49 2.24
752 765 3.183754 CATCCATACGTGCGACAAGTAA 58.816 45.455 0.00 0.00 32.82 2.24
753 766 3.513680 TCCATACGTGCGACAAGTAAT 57.486 42.857 0.00 0.00 32.82 1.89
754 767 3.852286 TCCATACGTGCGACAAGTAATT 58.148 40.909 0.00 0.00 32.82 1.40
755 768 3.861113 TCCATACGTGCGACAAGTAATTC 59.139 43.478 0.00 0.00 32.82 2.17
756 769 3.301579 CCATACGTGCGACAAGTAATTCG 60.302 47.826 0.00 0.00 32.82 3.34
757 770 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30
758 771 1.336148 ACGTGCGACAAGTAATTCGGA 60.336 47.619 0.00 0.00 35.73 4.55
759 772 1.722464 CGTGCGACAAGTAATTCGGAA 59.278 47.619 0.00 0.00 37.32 4.30
760 773 2.471749 CGTGCGACAAGTAATTCGGAAC 60.472 50.000 0.00 0.00 37.32 3.62
785 798 0.310232 GAGTACCCTGGATACGACGC 59.690 60.000 0.00 0.00 42.51 5.19
789 802 2.507854 CCCTGGATACGACGCCCAT 61.508 63.158 0.00 0.00 42.51 4.00
790 803 1.445942 CCTGGATACGACGCCCATT 59.554 57.895 0.00 0.00 42.51 3.16
791 804 0.179056 CCTGGATACGACGCCCATTT 60.179 55.000 0.00 0.00 42.51 2.32
792 805 1.069513 CCTGGATACGACGCCCATTTA 59.930 52.381 0.00 0.00 42.51 1.40
795 808 2.365941 TGGATACGACGCCCATTTATGA 59.634 45.455 0.00 0.00 42.51 2.15
796 809 3.007506 TGGATACGACGCCCATTTATGAT 59.992 43.478 0.00 0.00 42.51 2.45
798 811 2.613026 ACGACGCCCATTTATGATCA 57.387 45.000 0.00 0.00 0.00 2.92
799 812 2.210116 ACGACGCCCATTTATGATCAC 58.790 47.619 0.00 0.00 0.00 3.06
804 817 1.267806 GCCCATTTATGATCACGGCTG 59.732 52.381 0.00 0.00 30.55 4.85
806 819 2.487086 CCCATTTATGATCACGGCTGGA 60.487 50.000 14.63 0.00 0.00 3.86
807 820 3.415212 CCATTTATGATCACGGCTGGAT 58.585 45.455 0.00 0.00 0.00 3.41
808 821 3.438087 CCATTTATGATCACGGCTGGATC 59.562 47.826 13.96 13.96 41.20 3.36
811 824 1.522092 TGATCACGGCTGGATCACC 59.478 57.895 17.68 0.00 44.51 4.02
814 827 4.489771 CACGGCTGGATCACCCCC 62.490 72.222 0.00 0.00 34.81 5.40
879 946 1.303317 CTCAAAACCCACCTCCCCG 60.303 63.158 0.00 0.00 0.00 5.73
904 971 0.889186 AACACCAGAGCGCCGAAAAT 60.889 50.000 2.29 0.00 0.00 1.82
905 972 1.135315 CACCAGAGCGCCGAAAATG 59.865 57.895 2.29 0.00 0.00 2.32
906 973 1.003839 ACCAGAGCGCCGAAAATGA 60.004 52.632 2.29 0.00 0.00 2.57
907 974 0.605319 ACCAGAGCGCCGAAAATGAA 60.605 50.000 2.29 0.00 0.00 2.57
908 975 0.521291 CCAGAGCGCCGAAAATGAAA 59.479 50.000 2.29 0.00 0.00 2.69
909 976 1.068610 CCAGAGCGCCGAAAATGAAAA 60.069 47.619 2.29 0.00 0.00 2.29
910 977 2.415893 CCAGAGCGCCGAAAATGAAAAT 60.416 45.455 2.29 0.00 0.00 1.82
911 978 3.244976 CAGAGCGCCGAAAATGAAAATT 58.755 40.909 2.29 0.00 0.00 1.82
912 979 3.674753 CAGAGCGCCGAAAATGAAAATTT 59.325 39.130 2.29 0.00 0.00 1.82
913 980 4.150451 CAGAGCGCCGAAAATGAAAATTTT 59.850 37.500 2.29 2.28 36.54 1.82
943 1031 4.521062 CGCGCCTTCCCTCCTCTG 62.521 72.222 0.00 0.00 0.00 3.35
950 1038 2.356227 GCCTTCCCTCCTCTGGTTAAAG 60.356 54.545 0.00 0.00 0.00 1.85
951 1039 2.239907 CCTTCCCTCCTCTGGTTAAAGG 59.760 54.545 0.00 0.00 0.00 3.11
968 1066 4.735599 GGACCCCCGAACCCCTCT 62.736 72.222 0.00 0.00 0.00 3.69
969 1067 3.082055 GACCCCCGAACCCCTCTC 61.082 72.222 0.00 0.00 0.00 3.20
974 1072 1.306226 CCCGAACCCCTCTCTTCCT 60.306 63.158 0.00 0.00 0.00 3.36
976 1074 1.331399 CCGAACCCCTCTCTTCCTCC 61.331 65.000 0.00 0.00 0.00 4.30
985 1083 0.033991 TCTCTTCCTCCTCCACTCCG 60.034 60.000 0.00 0.00 0.00 4.63
990 1088 1.075970 CCTCCTCCACTCCGATCCA 60.076 63.158 0.00 0.00 0.00 3.41
991 1089 0.470833 CCTCCTCCACTCCGATCCAT 60.471 60.000 0.00 0.00 0.00 3.41
992 1090 0.965439 CTCCTCCACTCCGATCCATC 59.035 60.000 0.00 0.00 0.00 3.51
993 1091 0.470080 TCCTCCACTCCGATCCATCC 60.470 60.000 0.00 0.00 0.00 3.51
994 1092 1.476007 CCTCCACTCCGATCCATCCC 61.476 65.000 0.00 0.00 0.00 3.85
996 1094 1.766059 CCACTCCGATCCATCCCCA 60.766 63.158 0.00 0.00 0.00 4.96
997 1095 1.750930 CACTCCGATCCATCCCCAG 59.249 63.158 0.00 0.00 0.00 4.45
998 1096 0.760567 CACTCCGATCCATCCCCAGA 60.761 60.000 0.00 0.00 0.00 3.86
999 1097 0.192064 ACTCCGATCCATCCCCAGAT 59.808 55.000 0.00 0.00 0.00 2.90
1000 1098 0.901124 CTCCGATCCATCCCCAGATC 59.099 60.000 0.00 0.00 36.38 2.75
1003 1101 0.901124 CGATCCATCCCCAGATCTCC 59.099 60.000 0.00 0.00 37.37 3.71
1005 1103 0.574818 ATCCATCCCCAGATCTCCCA 59.425 55.000 0.00 0.00 0.00 4.37
1006 1104 0.104777 TCCATCCCCAGATCTCCCAG 60.105 60.000 0.00 0.00 0.00 4.45
1007 1105 0.401105 CCATCCCCAGATCTCCCAGT 60.401 60.000 0.00 0.00 0.00 4.00
1013 1111 1.623557 CCCAGATCTCCCAGTCCAAGA 60.624 57.143 0.00 0.00 0.00 3.02
1021 1119 1.916181 TCCCAGTCCAAGAAATCCTCC 59.084 52.381 0.00 0.00 0.00 4.30
1023 1121 1.064389 CCAGTCCAAGAAATCCTCCCC 60.064 57.143 0.00 0.00 0.00 4.81
1024 1122 1.918957 CAGTCCAAGAAATCCTCCCCT 59.081 52.381 0.00 0.00 0.00 4.79
1026 1124 1.916181 GTCCAAGAAATCCTCCCCTCA 59.084 52.381 0.00 0.00 0.00 3.86
1028 1126 1.064389 CCAAGAAATCCTCCCCTCACC 60.064 57.143 0.00 0.00 0.00 4.02
1029 1127 1.635487 CAAGAAATCCTCCCCTCACCA 59.365 52.381 0.00 0.00 0.00 4.17
1038 1136 2.436109 CCCTCACCACCACCAAGG 59.564 66.667 0.00 0.00 45.67 3.61
1042 1140 0.764890 CTCACCACCACCAAGGAAGA 59.235 55.000 0.00 0.00 41.22 2.87
1043 1141 1.142870 CTCACCACCACCAAGGAAGAA 59.857 52.381 0.00 0.00 41.22 2.52
1044 1142 1.780309 TCACCACCACCAAGGAAGAAT 59.220 47.619 0.00 0.00 41.22 2.40
1453 1564 1.519234 CCAGCTCGCAAGACGCATA 60.519 57.895 0.00 0.00 45.01 3.14
1484 1599 0.464554 GGCCTAAGATGGTGTCTGCC 60.465 60.000 0.00 0.00 36.67 4.85
1487 1602 1.833630 CCTAAGATGGTGTCTGCCTCA 59.166 52.381 0.00 0.00 37.23 3.86
1515 1668 1.202417 TGCAGGCGTAGAGATTAGCAC 60.202 52.381 0.00 0.00 0.00 4.40
1521 1674 2.530700 GCGTAGAGATTAGCACGTGTTC 59.469 50.000 18.38 9.33 36.78 3.18
1522 1675 2.776765 CGTAGAGATTAGCACGTGTTCG 59.223 50.000 18.38 4.44 43.34 3.95
1534 1687 0.179225 CGTGTTCGTGCTATGTTGGC 60.179 55.000 0.00 0.00 0.00 4.52
1536 1689 1.135972 GTGTTCGTGCTATGTTGGCTG 60.136 52.381 0.00 0.00 0.00 4.85
1539 1692 0.034756 TCGTGCTATGTTGGCTGTGT 59.965 50.000 0.00 0.00 0.00 3.72
1540 1693 0.443869 CGTGCTATGTTGGCTGTGTC 59.556 55.000 0.00 0.00 0.00 3.67
1543 1696 2.086094 TGCTATGTTGGCTGTGTCATG 58.914 47.619 0.00 0.00 0.00 3.07
1561 1755 6.649141 GTGTCATGTTCCAACTGAATGTAGTA 59.351 38.462 0.00 0.00 34.90 1.82
1647 1856 7.277539 TCCATTTTCTGCTTTTGTTGTTTGTAG 59.722 33.333 0.00 0.00 0.00 2.74
1653 1862 5.646606 TGCTTTTGTTGTTTGTAGAACCTC 58.353 37.500 0.00 0.00 0.00 3.85
1655 1864 5.515270 GCTTTTGTTGTTTGTAGAACCTCAC 59.485 40.000 0.00 0.00 0.00 3.51
1710 1924 8.925700 GCGTTTCTTCAATATTTTCTTGGAATT 58.074 29.630 0.00 0.00 0.00 2.17
1734 2511 4.571372 TTTAAGCCAAAAGTACCAACCG 57.429 40.909 0.00 0.00 0.00 4.44
1745 2522 5.684550 AAGTACCAACCGAAAATTCAGTC 57.315 39.130 0.00 0.00 0.00 3.51
1756 2533 5.391310 CCGAAAATTCAGTCTGTTCCATCTG 60.391 44.000 0.00 0.00 0.00 2.90
1776 2553 1.470098 GATGTCATGCTTCGGTTGCTT 59.530 47.619 0.00 0.00 0.00 3.91
1801 2584 4.567959 TCTGTCATGCTAATGTCACAATCG 59.432 41.667 0.00 0.00 35.15 3.34
1815 2599 3.571571 CACAATCGGTGTACTTCGAAGA 58.428 45.455 31.08 12.25 42.75 2.87
1828 2612 5.723672 ACTTCGAAGATTAGTGGACTGAA 57.276 39.130 31.08 0.00 35.04 3.02
1844 2628 7.331687 AGTGGACTGAAATTTTTGTTTGACAAG 59.668 33.333 0.00 0.00 39.53 3.16
1848 2632 9.134734 GACTGAAATTTTTGTTTGACAAGTACA 57.865 29.630 0.00 0.00 39.53 2.90
1849 2633 9.139174 ACTGAAATTTTTGTTTGACAAGTACAG 57.861 29.630 0.00 0.00 39.53 2.74
1850 2634 7.958674 TGAAATTTTTGTTTGACAAGTACAGC 58.041 30.769 0.00 0.00 39.53 4.40
1851 2635 7.600375 TGAAATTTTTGTTTGACAAGTACAGCA 59.400 29.630 0.00 0.00 39.53 4.41
1852 2636 7.897575 AATTTTTGTTTGACAAGTACAGCAA 57.102 28.000 0.00 0.00 39.53 3.91
1853 2637 6.698359 TTTTTGTTTGACAAGTACAGCAAC 57.302 33.333 0.00 0.00 39.53 4.17
1854 2638 5.637006 TTTGTTTGACAAGTACAGCAACT 57.363 34.783 0.00 0.00 39.53 3.16
1855 2639 4.614555 TGTTTGACAAGTACAGCAACTG 57.385 40.909 0.00 0.00 37.52 3.16
1856 2640 4.257731 TGTTTGACAAGTACAGCAACTGA 58.742 39.130 0.78 0.00 35.18 3.41
1857 2641 4.697828 TGTTTGACAAGTACAGCAACTGAA 59.302 37.500 0.78 0.00 35.18 3.02
1858 2642 5.163764 TGTTTGACAAGTACAGCAACTGAAG 60.164 40.000 0.78 0.00 35.18 3.02
1859 2643 4.137116 TGACAAGTACAGCAACTGAAGT 57.863 40.909 0.78 0.00 35.18 3.01
1860 2644 4.513442 TGACAAGTACAGCAACTGAAGTT 58.487 39.130 0.78 0.00 39.12 2.66
1861 2645 4.941263 TGACAAGTACAGCAACTGAAGTTT 59.059 37.500 0.78 0.00 35.83 2.66
1862 2646 5.064707 TGACAAGTACAGCAACTGAAGTTTC 59.935 40.000 0.78 0.00 35.83 2.78
1863 2647 4.335594 ACAAGTACAGCAACTGAAGTTTCC 59.664 41.667 0.78 0.00 35.83 3.13
1864 2648 4.423625 AGTACAGCAACTGAAGTTTCCT 57.576 40.909 0.78 0.00 35.83 3.36
1865 2649 4.781934 AGTACAGCAACTGAAGTTTCCTT 58.218 39.130 0.78 0.00 35.83 3.36
1866 2650 5.193679 AGTACAGCAACTGAAGTTTCCTTT 58.806 37.500 0.78 0.00 35.83 3.11
1867 2651 5.652452 AGTACAGCAACTGAAGTTTCCTTTT 59.348 36.000 0.78 0.00 35.83 2.27
1868 2652 4.747810 ACAGCAACTGAAGTTTCCTTTTG 58.252 39.130 0.78 0.00 35.83 2.44
1869 2653 4.462483 ACAGCAACTGAAGTTTCCTTTTGA 59.538 37.500 0.78 0.00 35.83 2.69
1870 2654 5.047377 ACAGCAACTGAAGTTTCCTTTTGAA 60.047 36.000 0.78 0.00 35.83 2.69
1871 2655 5.868801 CAGCAACTGAAGTTTCCTTTTGAAA 59.131 36.000 0.00 0.00 35.64 2.69
1872 2656 6.183360 CAGCAACTGAAGTTTCCTTTTGAAAC 60.183 38.462 9.23 9.23 46.49 2.78
1873 2657 8.995680 CAGCAACTGAAGTTTCCTTTTGAAACC 61.996 40.741 12.72 1.90 46.86 3.27
1898 2691 6.473455 CGAAGCAACTGAAGTTTCTGAAATTT 59.527 34.615 10.19 10.19 35.83 1.82
1909 2705 6.739112 AGTTTCTGAAATTTCTTGCAGTACC 58.261 36.000 18.64 0.00 38.91 3.34
1910 2706 6.321181 AGTTTCTGAAATTTCTTGCAGTACCA 59.679 34.615 18.64 0.00 38.91 3.25
1920 2716 5.939764 TCTTGCAGTACCATCTACTGAAT 57.060 39.130 10.96 0.00 45.69 2.57
1938 2773 5.707298 ACTGAATGTCTTGGTGTTATTCTGG 59.293 40.000 0.00 0.00 33.63 3.86
1942 2777 3.000727 GTCTTGGTGTTATTCTGGACCG 58.999 50.000 0.00 0.00 0.00 4.79
1944 2779 2.754946 TGGTGTTATTCTGGACCGTC 57.245 50.000 0.00 0.00 0.00 4.79
1962 3404 3.093574 CGTCTGCATTTGCTGTATTTCG 58.906 45.455 3.94 2.93 42.66 3.46
1964 3406 4.475944 GTCTGCATTTGCTGTATTTCGTT 58.524 39.130 3.94 0.00 42.66 3.85
1978 3420 7.124347 TGTATTTCGTTACCAGTGTTCATTC 57.876 36.000 0.00 0.00 0.00 2.67
2002 3444 3.568007 TCATTGGTGGCTTTGTCAGTAAC 59.432 43.478 0.00 0.00 0.00 2.50
2003 3445 3.290948 TTGGTGGCTTTGTCAGTAACT 57.709 42.857 0.00 0.00 0.00 2.24
2007 3449 3.003378 GGTGGCTTTGTCAGTAACTGTTC 59.997 47.826 0.00 0.00 32.61 3.18
2008 3450 3.877508 GTGGCTTTGTCAGTAACTGTTCT 59.122 43.478 0.00 0.00 32.61 3.01
2009 3451 3.876914 TGGCTTTGTCAGTAACTGTTCTG 59.123 43.478 0.00 5.11 32.61 3.02
2010 3452 3.251004 GGCTTTGTCAGTAACTGTTCTGG 59.749 47.826 15.20 1.23 32.61 3.86
2011 3453 3.304057 GCTTTGTCAGTAACTGTTCTGGC 60.304 47.826 13.84 13.84 36.90 4.85
2031 3473 2.783135 CTGGGCAGCTTCTTTCAGTTA 58.217 47.619 0.00 0.00 0.00 2.24
2036 3478 5.357878 TGGGCAGCTTCTTTCAGTTAATATG 59.642 40.000 0.00 0.00 0.00 1.78
2038 3480 6.264067 GGGCAGCTTCTTTCAGTTAATATGAT 59.736 38.462 0.00 0.00 0.00 2.45
2039 3481 7.137426 GGCAGCTTCTTTCAGTTAATATGATG 58.863 38.462 0.00 0.00 0.00 3.07
2049 3492 4.971830 CAGTTAATATGATGGCTTGTTGCG 59.028 41.667 0.00 0.00 44.05 4.85
2050 3493 4.640201 AGTTAATATGATGGCTTGTTGCGT 59.360 37.500 0.00 0.00 44.05 5.24
2054 3497 1.317613 TGATGGCTTGTTGCGTTTCT 58.682 45.000 0.00 0.00 44.05 2.52
2062 3506 4.435651 GGCTTGTTGCGTTTCTACTGATAC 60.436 45.833 0.00 0.00 44.05 2.24
2064 3508 5.575606 GCTTGTTGCGTTTCTACTGATACTA 59.424 40.000 0.00 0.00 0.00 1.82
2065 3509 6.453922 GCTTGTTGCGTTTCTACTGATACTAC 60.454 42.308 0.00 0.00 0.00 2.73
2066 3510 5.090757 TGTTGCGTTTCTACTGATACTACG 58.909 41.667 0.00 0.00 0.00 3.51
2089 3533 5.348724 CGTATCTTTCTGCTTGCAGACTTTA 59.651 40.000 22.92 7.62 0.00 1.85
2093 3537 6.230472 TCTTTCTGCTTGCAGACTTTATACA 58.770 36.000 22.92 5.19 0.00 2.29
2094 3538 6.710295 TCTTTCTGCTTGCAGACTTTATACAA 59.290 34.615 22.92 11.98 0.00 2.41
2136 3634 9.929180 ATATGCTTATGTAGTTATGTCACGAAT 57.071 29.630 0.00 0.00 0.00 3.34
2148 3646 9.046296 AGTTATGTCACGAATATCCAATCTTTC 57.954 33.333 0.00 0.00 0.00 2.62
2174 3804 7.560796 AAGACTCTATTTTCCTCTCCTGAAA 57.439 36.000 0.00 0.00 0.00 2.69
2175 3805 7.560796 AGACTCTATTTTCCTCTCCTGAAAA 57.439 36.000 0.00 0.00 43.56 2.29
2179 3813 8.881262 ACTCTATTTTCCTCTCCTGAAAAAGTA 58.119 33.333 2.70 0.00 42.91 2.24
2184 3818 6.635030 TTCCTCTCCTGAAAAAGTAAAAGC 57.365 37.500 0.00 0.00 0.00 3.51
2194 3828 7.042523 CCTGAAAAAGTAAAAGCAAGACCATTG 60.043 37.037 0.00 0.00 0.00 2.82
2213 3927 7.293073 ACCATTGCATATTCTTCCTGACTATT 58.707 34.615 0.00 0.00 0.00 1.73
2218 3932 9.905713 TTGCATATTCTTCCTGACTATTAAACT 57.094 29.630 0.00 0.00 0.00 2.66
2219 3933 9.330063 TGCATATTCTTCCTGACTATTAAACTG 57.670 33.333 0.00 0.00 0.00 3.16
2220 3934 9.331282 GCATATTCTTCCTGACTATTAAACTGT 57.669 33.333 0.00 0.00 0.00 3.55
2241 4207 7.541162 ACTGTAGTTGTAGTGTAATTCGCATA 58.459 34.615 0.00 0.00 0.00 3.14
2242 4208 7.487189 ACTGTAGTTGTAGTGTAATTCGCATAC 59.513 37.037 0.00 0.00 0.00 2.39
2362 4348 7.493971 ACTGCAAGATAAATGACAGTGAGATAC 59.506 37.037 0.00 0.00 35.41 2.24
2363 4351 7.330262 TGCAAGATAAATGACAGTGAGATACA 58.670 34.615 0.00 0.00 0.00 2.29
2388 4381 8.954350 CAACTGGATAGATTTCTCACTGAAAAT 58.046 33.333 0.00 0.00 46.32 1.82
2404 4397 5.299028 ACTGAAAATGTTTCCAAAATTGCCC 59.701 36.000 0.00 0.00 0.00 5.36
2410 4403 0.682292 TTCCAAAATTGCCCGGGTTC 59.318 50.000 24.63 6.78 0.00 3.62
2517 4514 8.771920 AATGACGTTCATATACTTCAGTTCAA 57.228 30.769 0.00 0.00 35.76 2.69
2543 4562 6.788243 TCAATGTATAATTGTGAAGCTGCTG 58.212 36.000 1.35 0.00 0.00 4.41
2544 4563 6.598850 TCAATGTATAATTGTGAAGCTGCTGA 59.401 34.615 1.35 0.00 0.00 4.26
2566 4585 0.100861 CGGGCTCCTCGACTTAAGAC 59.899 60.000 10.09 1.53 0.00 3.01
2608 4627 3.450457 TGTTGCTCCAAAACATTTCAGGT 59.550 39.130 0.00 0.00 32.71 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.983378 GGGGTGCCATGTCTAGTCCT 60.983 60.000 0.00 0.00 0.00 3.85
1 2 1.527370 GGGGTGCCATGTCTAGTCC 59.473 63.158 0.00 0.00 0.00 3.85
2 3 1.527370 GGGGGTGCCATGTCTAGTC 59.473 63.158 0.00 0.00 0.00 2.59
3 4 3.741325 GGGGGTGCCATGTCTAGT 58.259 61.111 0.00 0.00 0.00 2.57
23 24 3.793144 GAGAAACAGGGCTGCGCG 61.793 66.667 11.20 0.00 0.00 6.86
24 25 3.435186 GGAGAAACAGGGCTGCGC 61.435 66.667 8.86 8.86 0.00 6.09
25 26 1.372087 GATGGAGAAACAGGGCTGCG 61.372 60.000 0.00 0.00 0.00 5.18
26 27 1.372087 CGATGGAGAAACAGGGCTGC 61.372 60.000 0.00 0.00 0.00 5.25
27 28 0.036010 ACGATGGAGAAACAGGGCTG 60.036 55.000 0.00 0.00 0.00 4.85
28 29 0.693049 AACGATGGAGAAACAGGGCT 59.307 50.000 0.00 0.00 0.00 5.19
29 30 0.804989 CAACGATGGAGAAACAGGGC 59.195 55.000 0.00 0.00 0.00 5.19
41 42 2.401583 TGGGATGAGAACCAACGATG 57.598 50.000 0.00 0.00 32.89 3.84
42 43 3.433306 TTTGGGATGAGAACCAACGAT 57.567 42.857 0.00 0.00 45.77 3.73
43 44 2.940994 TTTGGGATGAGAACCAACGA 57.059 45.000 0.00 0.00 45.77 3.85
44 45 3.857010 GCTTTTTGGGATGAGAACCAACG 60.857 47.826 0.00 0.00 45.77 4.10
45 46 3.653344 GCTTTTTGGGATGAGAACCAAC 58.347 45.455 0.00 0.00 45.77 3.77
46 47 2.295909 CGCTTTTTGGGATGAGAACCAA 59.704 45.455 0.00 0.00 44.53 3.67
47 48 1.885887 CGCTTTTTGGGATGAGAACCA 59.114 47.619 0.00 0.00 34.29 3.67
48 49 2.159382 TCGCTTTTTGGGATGAGAACC 58.841 47.619 0.00 0.00 32.41 3.62
49 50 3.366374 CCTTCGCTTTTTGGGATGAGAAC 60.366 47.826 0.00 0.00 37.47 3.01
50 51 2.819608 CCTTCGCTTTTTGGGATGAGAA 59.180 45.455 0.00 0.00 37.47 2.87
51 52 2.224769 ACCTTCGCTTTTTGGGATGAGA 60.225 45.455 0.00 0.00 37.47 3.27
52 53 2.095059 CACCTTCGCTTTTTGGGATGAG 60.095 50.000 0.00 0.00 37.47 2.90
53 54 1.885887 CACCTTCGCTTTTTGGGATGA 59.114 47.619 0.00 0.00 37.47 2.92
54 55 1.669795 GCACCTTCGCTTTTTGGGATG 60.670 52.381 0.00 0.00 37.47 3.51
55 56 0.603065 GCACCTTCGCTTTTTGGGAT 59.397 50.000 0.00 0.00 37.47 3.85
56 57 0.753479 TGCACCTTCGCTTTTTGGGA 60.753 50.000 0.00 0.00 35.75 4.37
57 58 0.103937 TTGCACCTTCGCTTTTTGGG 59.896 50.000 0.00 0.00 0.00 4.12
58 59 2.153366 ATTGCACCTTCGCTTTTTGG 57.847 45.000 0.00 0.00 0.00 3.28
59 60 2.476241 GGAATTGCACCTTCGCTTTTTG 59.524 45.455 0.00 0.00 0.00 2.44
60 61 2.754472 GGAATTGCACCTTCGCTTTTT 58.246 42.857 0.00 0.00 0.00 1.94
61 62 1.335872 CGGAATTGCACCTTCGCTTTT 60.336 47.619 0.00 0.00 0.00 2.27
62 63 0.240945 CGGAATTGCACCTTCGCTTT 59.759 50.000 0.00 0.00 0.00 3.51
63 64 0.605319 TCGGAATTGCACCTTCGCTT 60.605 50.000 0.00 0.00 0.00 4.68
64 65 1.003839 TCGGAATTGCACCTTCGCT 60.004 52.632 0.00 0.00 0.00 4.93
65 66 1.134694 GTCGGAATTGCACCTTCGC 59.865 57.895 0.00 0.00 0.00 4.70
66 67 1.419922 CGTCGGAATTGCACCTTCG 59.580 57.895 0.00 0.00 0.00 3.79
67 68 1.644786 CCCGTCGGAATTGCACCTTC 61.645 60.000 14.39 0.00 0.00 3.46
68 69 1.674322 CCCGTCGGAATTGCACCTT 60.674 57.895 14.39 0.00 0.00 3.50
69 70 1.910580 ATCCCGTCGGAATTGCACCT 61.911 55.000 14.39 0.00 43.10 4.00
70 71 1.436983 GATCCCGTCGGAATTGCACC 61.437 60.000 14.39 0.00 43.10 5.01
71 72 0.462047 AGATCCCGTCGGAATTGCAC 60.462 55.000 14.39 0.00 43.10 4.57
72 73 0.461870 CAGATCCCGTCGGAATTGCA 60.462 55.000 14.39 0.00 43.10 4.08
73 74 0.179084 TCAGATCCCGTCGGAATTGC 60.179 55.000 14.39 0.00 43.10 3.56
74 75 1.134818 TGTCAGATCCCGTCGGAATTG 60.135 52.381 14.39 5.80 43.10 2.32
75 76 1.191535 TGTCAGATCCCGTCGGAATT 58.808 50.000 14.39 0.00 43.10 2.17
76 77 1.191535 TTGTCAGATCCCGTCGGAAT 58.808 50.000 14.39 0.00 43.10 3.01
77 78 0.970640 TTTGTCAGATCCCGTCGGAA 59.029 50.000 14.39 0.00 43.10 4.30
78 79 0.970640 TTTTGTCAGATCCCGTCGGA 59.029 50.000 14.39 0.00 44.33 4.55
79 80 1.803334 TTTTTGTCAGATCCCGTCGG 58.197 50.000 3.60 3.60 0.00 4.79
97 98 1.107114 TGGGTGCGTGTGTCATTTTT 58.893 45.000 0.00 0.00 0.00 1.94
98 99 1.000385 CATGGGTGCGTGTGTCATTTT 60.000 47.619 0.00 0.00 0.00 1.82
99 100 0.597568 CATGGGTGCGTGTGTCATTT 59.402 50.000 0.00 0.00 0.00 2.32
100 101 1.243342 CCATGGGTGCGTGTGTCATT 61.243 55.000 2.85 0.00 0.00 2.57
101 102 1.675310 CCATGGGTGCGTGTGTCAT 60.675 57.895 2.85 0.00 0.00 3.06
102 103 2.281414 CCATGGGTGCGTGTGTCA 60.281 61.111 2.85 0.00 0.00 3.58
103 104 1.452145 AAACCATGGGTGCGTGTGTC 61.452 55.000 18.09 0.00 35.34 3.67
104 105 1.452145 GAAACCATGGGTGCGTGTGT 61.452 55.000 18.09 0.00 35.34 3.72
105 106 1.285641 GAAACCATGGGTGCGTGTG 59.714 57.895 18.09 0.00 35.34 3.82
106 107 1.901464 GGAAACCATGGGTGCGTGT 60.901 57.895 18.09 0.00 35.34 4.49
107 108 1.586154 GAGGAAACCATGGGTGCGTG 61.586 60.000 18.09 0.00 35.34 5.34
108 109 1.303317 GAGGAAACCATGGGTGCGT 60.303 57.895 18.09 10.37 35.34 5.24
109 110 2.046285 GGAGGAAACCATGGGTGCG 61.046 63.158 18.09 0.00 35.34 5.34
110 111 2.046285 CGGAGGAAACCATGGGTGC 61.046 63.158 18.09 8.34 35.34 5.01
111 112 0.960364 CACGGAGGAAACCATGGGTG 60.960 60.000 18.09 7.89 35.34 4.61
112 113 1.378762 CACGGAGGAAACCATGGGT 59.621 57.895 18.09 6.57 37.65 4.51
113 114 2.046285 GCACGGAGGAAACCATGGG 61.046 63.158 18.09 0.00 0.00 4.00
114 115 2.046285 GGCACGGAGGAAACCATGG 61.046 63.158 11.19 11.19 0.00 3.66
115 116 3.590824 GGCACGGAGGAAACCATG 58.409 61.111 0.00 0.00 0.00 3.66
135 136 2.567049 CCACTCCGACGACAGTCC 59.433 66.667 0.00 0.00 44.28 3.85
144 145 2.741092 GCAACTCACCCACTCCGA 59.259 61.111 0.00 0.00 0.00 4.55
146 147 1.668151 GTCGCAACTCACCCACTCC 60.668 63.158 0.00 0.00 0.00 3.85
147 148 2.022129 CGTCGCAACTCACCCACTC 61.022 63.158 0.00 0.00 0.00 3.51
173 174 2.060326 TGCTAGTGGAGAAAACGACG 57.940 50.000 0.00 0.00 0.00 5.12
176 177 1.464997 GGCTTGCTAGTGGAGAAAACG 59.535 52.381 0.00 0.00 0.00 3.60
177 178 1.813178 GGGCTTGCTAGTGGAGAAAAC 59.187 52.381 0.00 0.00 0.00 2.43
180 181 1.596934 CGGGCTTGCTAGTGGAGAA 59.403 57.895 0.00 0.00 0.00 2.87
195 196 2.886730 ATAACAAAGGGCTCGCCGGG 62.887 60.000 2.18 0.00 36.85 5.73
200 201 1.762222 CGCCGATAACAAAGGGCTCG 61.762 60.000 0.00 0.00 43.38 5.03
204 206 1.436983 GGAGCGCCGATAACAAAGGG 61.437 60.000 2.29 0.00 0.00 3.95
218 220 2.581354 CCAAGGTGGAGAGGAGCG 59.419 66.667 0.00 0.00 40.96 5.03
257 259 3.303928 CCCGGGCTCGAGGGTATC 61.304 72.222 8.08 0.00 42.67 2.24
281 283 0.179029 ACACACCAAAGTCCCTTCCG 60.179 55.000 0.00 0.00 0.00 4.30
287 289 1.164041 CCACCGACACACCAAAGTCC 61.164 60.000 0.00 0.00 0.00 3.85
288 290 0.463116 ACCACCGACACACCAAAGTC 60.463 55.000 0.00 0.00 0.00 3.01
321 323 0.868406 GAACAAGACTGGCCGAAGTG 59.132 55.000 0.00 0.00 0.00 3.16
322 324 0.759346 AGAACAAGACTGGCCGAAGT 59.241 50.000 0.00 0.00 0.00 3.01
335 337 2.564947 AGTTGCCCACACAAAAGAACAA 59.435 40.909 0.00 0.00 0.00 2.83
338 340 2.175202 ACAGTTGCCCACACAAAAGAA 58.825 42.857 0.00 0.00 0.00 2.52
339 341 1.846007 ACAGTTGCCCACACAAAAGA 58.154 45.000 0.00 0.00 0.00 2.52
344 346 0.814457 GAACAACAGTTGCCCACACA 59.186 50.000 13.56 0.00 0.00 3.72
354 356 3.769739 TGGCACAGATAGAACAACAGT 57.230 42.857 0.00 0.00 0.00 3.55
383 385 0.032815 TTGAGCACGGTCACGAATGA 59.967 50.000 0.00 0.00 44.60 2.57
385 387 0.249699 TGTTGAGCACGGTCACGAAT 60.250 50.000 0.00 0.00 44.60 3.34
394 396 3.885484 AGATGAAAACTGTTGAGCACG 57.115 42.857 0.00 0.00 0.00 5.34
396 398 3.243501 GGCAAGATGAAAACTGTTGAGCA 60.244 43.478 0.00 0.00 0.00 4.26
401 403 2.687935 ACACGGCAAGATGAAAACTGTT 59.312 40.909 0.00 0.00 0.00 3.16
402 404 2.033299 CACACGGCAAGATGAAAACTGT 59.967 45.455 0.00 0.00 0.00 3.55
405 407 1.336755 ACCACACGGCAAGATGAAAAC 59.663 47.619 0.00 0.00 34.57 2.43
429 431 2.058001 AGACGTCGGCATCCATGGA 61.058 57.895 18.88 18.88 0.00 3.41
432 434 0.821517 TTACAGACGTCGGCATCCAT 59.178 50.000 15.92 0.00 0.00 3.41
437 439 0.240145 CAGAGTTACAGACGTCGGCA 59.760 55.000 15.92 0.00 0.00 5.69
444 446 9.058424 GTTTACAAACAAAACAGAGTTACAGAC 57.942 33.333 0.00 0.00 38.74 3.51
446 448 7.747357 ACGTTTACAAACAAAACAGAGTTACAG 59.253 33.333 5.74 0.00 38.81 2.74
447 449 7.534578 CACGTTTACAAACAAAACAGAGTTACA 59.465 33.333 5.74 0.00 38.81 2.41
448 450 7.007636 CCACGTTTACAAACAAAACAGAGTTAC 59.992 37.037 5.74 0.00 38.81 2.50
452 454 4.264380 GCCACGTTTACAAACAAAACAGAG 59.736 41.667 5.74 0.00 38.81 3.35
453 455 4.167268 GCCACGTTTACAAACAAAACAGA 58.833 39.130 5.74 0.00 38.81 3.41
454 456 3.921021 TGCCACGTTTACAAACAAAACAG 59.079 39.130 5.74 0.00 38.81 3.16
455 457 3.909430 TGCCACGTTTACAAACAAAACA 58.091 36.364 5.74 0.00 38.81 2.83
456 458 5.251832 CAATGCCACGTTTACAAACAAAAC 58.748 37.500 5.74 0.00 38.81 2.43
457 459 4.201724 GCAATGCCACGTTTACAAACAAAA 60.202 37.500 0.00 0.00 38.81 2.44
458 460 3.307242 GCAATGCCACGTTTACAAACAAA 59.693 39.130 0.00 0.00 38.81 2.83
459 461 2.860735 GCAATGCCACGTTTACAAACAA 59.139 40.909 0.00 0.00 38.81 2.83
464 475 0.595588 CCAGCAATGCCACGTTTACA 59.404 50.000 0.00 0.00 0.00 2.41
473 484 0.752743 TAGCATCACCCAGCAATGCC 60.753 55.000 0.00 0.00 45.42 4.40
504 516 1.865865 TTTTGACACGCACTCCTCTC 58.134 50.000 0.00 0.00 0.00 3.20
509 521 9.549509 TTATATTTGTATTTTTGACACGCACTC 57.450 29.630 0.00 0.00 0.00 3.51
539 552 9.921637 TGTTTGTGCTTTAATATAAAGGAAAGG 57.078 29.630 10.83 0.00 31.03 3.11
548 561 8.836413 GCAGGAGTATGTTTGTGCTTTAATATA 58.164 33.333 0.00 0.00 0.00 0.86
550 563 6.657117 TGCAGGAGTATGTTTGTGCTTTAATA 59.343 34.615 0.00 0.00 0.00 0.98
554 567 3.221771 TGCAGGAGTATGTTTGTGCTTT 58.778 40.909 0.00 0.00 0.00 3.51
562 575 4.256920 GTGTCATCTTGCAGGAGTATGTT 58.743 43.478 4.35 0.00 0.00 2.71
568 581 1.638133 CTCGTGTCATCTTGCAGGAG 58.362 55.000 4.35 0.00 39.92 3.69
570 583 1.364626 GGCTCGTGTCATCTTGCAGG 61.365 60.000 0.00 0.00 0.00 4.85
573 586 1.975363 GCTGGCTCGTGTCATCTTGC 61.975 60.000 0.00 0.00 0.00 4.01
595 608 6.144402 ACAATTTTGTGCATGTTCGAGAATTC 59.856 34.615 0.00 0.00 40.49 2.17
611 624 1.336755 GTCGTCCCTGCACAATTTTGT 59.663 47.619 0.00 0.00 43.36 2.83
612 625 1.608590 AGTCGTCCCTGCACAATTTTG 59.391 47.619 0.00 0.00 0.00 2.44
613 626 1.880027 GAGTCGTCCCTGCACAATTTT 59.120 47.619 0.00 0.00 0.00 1.82
614 627 1.202758 TGAGTCGTCCCTGCACAATTT 60.203 47.619 0.00 0.00 0.00 1.82
615 628 0.396435 TGAGTCGTCCCTGCACAATT 59.604 50.000 0.00 0.00 0.00 2.32
616 629 0.320771 GTGAGTCGTCCCTGCACAAT 60.321 55.000 0.00 0.00 0.00 2.71
617 630 1.069090 GTGAGTCGTCCCTGCACAA 59.931 57.895 0.00 0.00 0.00 3.33
618 631 2.734591 GTGAGTCGTCCCTGCACA 59.265 61.111 0.00 0.00 0.00 4.57
619 632 2.430921 CGTGAGTCGTCCCTGCAC 60.431 66.667 0.00 0.00 34.52 4.57
620 633 2.596338 TCGTGAGTCGTCCCTGCA 60.596 61.111 0.00 0.00 40.80 4.41
621 634 2.126424 GTCGTGAGTCGTCCCTGC 60.126 66.667 0.00 0.00 40.80 4.85
622 635 2.176055 CGTCGTGAGTCGTCCCTG 59.824 66.667 0.00 0.00 40.80 4.45
623 636 2.031616 TCGTCGTGAGTCGTCCCT 59.968 61.111 0.00 0.00 43.00 4.20
624 637 2.479650 CTCGTCGTGAGTCGTCCC 59.520 66.667 0.00 0.00 43.00 4.46
632 645 1.215382 CCCTTCATGCTCGTCGTGA 59.785 57.895 0.00 0.00 38.86 4.35
633 646 0.803768 CTCCCTTCATGCTCGTCGTG 60.804 60.000 0.00 0.00 0.00 4.35
634 647 1.251527 ACTCCCTTCATGCTCGTCGT 61.252 55.000 0.00 0.00 0.00 4.34
635 648 0.108615 AACTCCCTTCATGCTCGTCG 60.109 55.000 0.00 0.00 0.00 5.12
636 649 1.363744 CAACTCCCTTCATGCTCGTC 58.636 55.000 0.00 0.00 0.00 4.20
639 652 1.674962 GATGCAACTCCCTTCATGCTC 59.325 52.381 0.00 0.00 39.49 4.26
641 654 0.743097 GGATGCAACTCCCTTCATGC 59.257 55.000 0.00 0.00 39.22 4.06
644 657 1.425066 ACTTGGATGCAACTCCCTTCA 59.575 47.619 3.88 0.00 34.12 3.02
645 658 2.206576 ACTTGGATGCAACTCCCTTC 57.793 50.000 3.88 0.00 34.12 3.46
649 662 2.633488 GGAGTACTTGGATGCAACTCC 58.367 52.381 17.59 17.59 46.78 3.85
658 671 1.897802 GAAACGGAGGGAGTACTTGGA 59.102 52.381 0.00 0.00 0.00 3.53
660 673 3.396260 TTGAAACGGAGGGAGTACTTG 57.604 47.619 0.00 0.00 0.00 3.16
661 674 4.635699 ATTTGAAACGGAGGGAGTACTT 57.364 40.909 0.00 0.00 0.00 2.24
664 677 5.622914 CGAGTAATTTGAAACGGAGGGAGTA 60.623 44.000 0.00 0.00 0.00 2.59
665 678 4.576879 GAGTAATTTGAAACGGAGGGAGT 58.423 43.478 0.00 0.00 0.00 3.85
666 679 3.617263 CGAGTAATTTGAAACGGAGGGAG 59.383 47.826 0.00 0.00 0.00 4.30
667 680 3.007182 ACGAGTAATTTGAAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
668 681 3.332034 ACGAGTAATTTGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
669 682 3.060363 CGACGAGTAATTTGAAACGGAGG 59.940 47.826 0.00 0.00 0.00 4.30
670 683 3.481467 GCGACGAGTAATTTGAAACGGAG 60.481 47.826 0.00 0.00 0.00 4.63
671 684 2.409378 GCGACGAGTAATTTGAAACGGA 59.591 45.455 0.00 0.00 0.00 4.69
672 685 2.410730 AGCGACGAGTAATTTGAAACGG 59.589 45.455 0.00 0.00 0.00 4.44
673 686 3.120616 TCAGCGACGAGTAATTTGAAACG 59.879 43.478 0.00 0.00 0.00 3.60
674 687 4.640805 TCAGCGACGAGTAATTTGAAAC 57.359 40.909 0.00 0.00 0.00 2.78
675 688 5.660629 TTTCAGCGACGAGTAATTTGAAA 57.339 34.783 0.00 0.31 32.52 2.69
676 689 5.390461 CCATTTCAGCGACGAGTAATTTGAA 60.390 40.000 0.00 0.00 0.00 2.69
677 690 4.092821 CCATTTCAGCGACGAGTAATTTGA 59.907 41.667 0.00 0.00 0.00 2.69
678 691 4.092821 TCCATTTCAGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
679 692 4.250464 TCCATTTCAGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
680 693 3.857052 TCCATTTCAGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
681 694 3.520290 TCCATTTCAGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
682 695 3.186909 CATCCATTTCAGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
683 696 2.165641 ACATCCATTTCAGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
684 697 1.066858 ACATCCATTTCAGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
685 698 1.645034 ACATCCATTTCAGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
686 699 2.951457 TACATCCATTTCAGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
687 700 3.384668 AGATACATCCATTTCAGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
688 701 5.773575 TCTAGATACATCCATTTCAGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
689 702 6.040955 AGTTCTAGATACATCCATTTCAGCGA 59.959 38.462 0.00 0.00 0.00 4.93
690 703 6.219473 AGTTCTAGATACATCCATTTCAGCG 58.781 40.000 0.00 0.00 0.00 5.18
691 704 9.547753 TTTAGTTCTAGATACATCCATTTCAGC 57.452 33.333 0.00 0.00 0.00 4.26
715 728 8.867097 ACGTATGGATGTACCTAGATGTATTTT 58.133 33.333 0.00 0.00 39.86 1.82
716 729 8.304596 CACGTATGGATGTACCTAGATGTATTT 58.695 37.037 0.00 0.00 39.86 1.40
717 730 7.577046 GCACGTATGGATGTACCTAGATGTATT 60.577 40.741 0.00 0.00 39.86 1.89
718 731 6.127703 GCACGTATGGATGTACCTAGATGTAT 60.128 42.308 0.00 0.00 39.86 2.29
719 732 5.182570 GCACGTATGGATGTACCTAGATGTA 59.817 44.000 0.00 0.00 39.86 2.29
720 733 4.022242 GCACGTATGGATGTACCTAGATGT 60.022 45.833 0.00 0.00 39.86 3.06
721 734 4.486090 GCACGTATGGATGTACCTAGATG 58.514 47.826 0.00 0.00 39.86 2.90
722 735 3.190744 CGCACGTATGGATGTACCTAGAT 59.809 47.826 0.00 0.00 39.86 1.98
723 736 2.551032 CGCACGTATGGATGTACCTAGA 59.449 50.000 0.00 0.00 39.86 2.43
724 737 2.551032 TCGCACGTATGGATGTACCTAG 59.449 50.000 0.00 0.00 39.86 3.02
725 738 2.291465 GTCGCACGTATGGATGTACCTA 59.709 50.000 0.00 0.00 39.86 3.08
726 739 1.066605 GTCGCACGTATGGATGTACCT 59.933 52.381 0.00 0.00 39.86 3.08
727 740 1.202325 TGTCGCACGTATGGATGTACC 60.202 52.381 0.00 0.00 39.54 3.34
728 741 2.197792 TGTCGCACGTATGGATGTAC 57.802 50.000 0.00 0.00 0.00 2.90
729 742 2.164827 ACTTGTCGCACGTATGGATGTA 59.835 45.455 0.00 0.00 0.00 2.29
730 743 1.067142 ACTTGTCGCACGTATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
731 744 1.640428 ACTTGTCGCACGTATGGATG 58.360 50.000 0.00 0.00 0.00 3.51
732 745 3.513680 TTACTTGTCGCACGTATGGAT 57.486 42.857 0.00 0.00 0.00 3.41
733 746 3.513680 ATTACTTGTCGCACGTATGGA 57.486 42.857 0.00 0.00 0.00 3.41
734 747 3.301579 CGAATTACTTGTCGCACGTATGG 60.302 47.826 0.00 0.00 0.00 2.74
735 748 3.301579 CCGAATTACTTGTCGCACGTATG 60.302 47.826 0.00 0.00 35.93 2.39
736 749 2.855963 CCGAATTACTTGTCGCACGTAT 59.144 45.455 0.00 0.00 35.93 3.06
737 750 2.095314 TCCGAATTACTTGTCGCACGTA 60.095 45.455 0.00 0.00 35.93 3.57
738 751 1.065358 CCGAATTACTTGTCGCACGT 58.935 50.000 0.00 0.00 35.93 4.49
739 752 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
740 753 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
741 754 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
742 755 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
743 756 2.598589 TCCGTTCCGAATTACTTGTCG 58.401 47.619 0.00 0.00 37.01 4.35
744 757 3.370061 CCTTCCGTTCCGAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
745 758 3.007182 TCCTTCCGTTCCGAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
746 759 3.592059 TCCTTCCGTTCCGAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
747 760 3.260128 ACTCCTTCCGTTCCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
748 761 2.830321 ACTCCTTCCGTTCCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
749 762 3.242549 ACTCCTTCCGTTCCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
750 763 3.131046 GGTACTCCTTCCGTTCCGAATTA 59.869 47.826 0.00 0.00 0.00 1.40
751 764 2.093816 GGTACTCCTTCCGTTCCGAATT 60.094 50.000 0.00 0.00 0.00 2.17
752 765 1.479730 GGTACTCCTTCCGTTCCGAAT 59.520 52.381 0.00 0.00 0.00 3.34
753 766 0.890683 GGTACTCCTTCCGTTCCGAA 59.109 55.000 0.00 0.00 0.00 4.30
754 767 0.967380 GGGTACTCCTTCCGTTCCGA 60.967 60.000 0.00 0.00 0.00 4.55
755 768 0.969409 AGGGTACTCCTTCCGTTCCG 60.969 60.000 0.00 0.00 45.47 4.30
756 769 0.535797 CAGGGTACTCCTTCCGTTCC 59.464 60.000 0.52 0.00 45.47 3.62
757 770 0.535797 CCAGGGTACTCCTTCCGTTC 59.464 60.000 0.52 0.00 45.47 3.95
758 771 0.115745 TCCAGGGTACTCCTTCCGTT 59.884 55.000 0.52 0.00 45.47 4.44
759 772 0.338814 ATCCAGGGTACTCCTTCCGT 59.661 55.000 0.52 0.00 45.47 4.69
760 773 1.962100 GTATCCAGGGTACTCCTTCCG 59.038 57.143 2.11 0.00 45.47 4.30
761 774 1.962100 CGTATCCAGGGTACTCCTTCC 59.038 57.143 8.33 0.00 45.47 3.46
762 775 2.622470 GTCGTATCCAGGGTACTCCTTC 59.378 54.545 8.33 0.00 45.47 3.46
763 776 2.664015 GTCGTATCCAGGGTACTCCTT 58.336 52.381 8.33 0.00 45.47 3.36
765 778 0.950116 CGTCGTATCCAGGGTACTCC 59.050 60.000 8.33 0.00 0.00 3.85
766 779 0.310232 GCGTCGTATCCAGGGTACTC 59.690 60.000 8.33 0.73 0.00 2.59
767 780 1.105759 GGCGTCGTATCCAGGGTACT 61.106 60.000 8.33 0.00 0.00 2.73
768 781 1.361632 GGCGTCGTATCCAGGGTAC 59.638 63.158 0.00 0.00 0.00 3.34
769 782 1.829533 GGGCGTCGTATCCAGGGTA 60.830 63.158 0.00 0.00 0.00 3.69
770 783 3.152400 GGGCGTCGTATCCAGGGT 61.152 66.667 0.00 0.00 0.00 4.34
771 784 2.040009 AATGGGCGTCGTATCCAGGG 62.040 60.000 9.27 0.00 33.68 4.45
772 785 0.179056 AAATGGGCGTCGTATCCAGG 60.179 55.000 9.27 0.00 33.68 4.45
779 792 2.210116 GTGATCATAAATGGGCGTCGT 58.790 47.619 0.00 0.00 0.00 4.34
781 794 1.531149 CCGTGATCATAAATGGGCGTC 59.469 52.381 0.00 0.00 0.00 5.19
785 798 1.881973 CCAGCCGTGATCATAAATGGG 59.118 52.381 0.00 0.00 0.00 4.00
789 802 3.836365 TGATCCAGCCGTGATCATAAA 57.164 42.857 0.00 0.00 42.68 1.40
795 808 2.911143 GGGTGATCCAGCCGTGAT 59.089 61.111 0.00 0.00 42.21 3.06
814 827 1.064946 GATCTGGTCTCACGCGGAG 59.935 63.158 12.47 14.53 45.49 4.63
824 885 0.970937 TGGACGGTGAGGATCTGGTC 60.971 60.000 0.00 0.00 34.92 4.02
879 946 3.423154 CGCTCTGGTGTTTCGGGC 61.423 66.667 0.00 0.00 0.00 6.13
904 971 1.605202 GCGAGCCTGGCAAAATTTTCA 60.605 47.619 22.65 0.00 0.00 2.69
905 972 1.070821 GCGAGCCTGGCAAAATTTTC 58.929 50.000 22.65 6.61 0.00 2.29
906 973 0.320683 GGCGAGCCTGGCAAAATTTT 60.321 50.000 22.65 0.00 0.00 1.82
907 974 1.293179 GGCGAGCCTGGCAAAATTT 59.707 52.632 22.65 0.00 0.00 1.82
908 975 2.649129 GGGCGAGCCTGGCAAAATT 61.649 57.895 22.65 0.00 35.84 1.82
909 976 3.070576 GGGCGAGCCTGGCAAAAT 61.071 61.111 22.65 0.00 35.84 1.82
935 1009 1.560146 GGTCCCTTTAACCAGAGGAGG 59.440 57.143 0.00 0.00 36.75 4.30
943 1031 0.322816 GTTCGGGGGTCCCTTTAACC 60.323 60.000 8.15 0.00 42.67 2.85
951 1039 4.735599 AGAGGGGTTCGGGGGTCC 62.736 72.222 0.00 0.00 0.00 4.46
953 1041 3.189770 AAGAGAGGGGTTCGGGGGT 62.190 63.158 0.00 0.00 0.00 4.95
968 1066 0.631753 ATCGGAGTGGAGGAGGAAGA 59.368 55.000 0.00 0.00 0.00 2.87
969 1067 1.036707 GATCGGAGTGGAGGAGGAAG 58.963 60.000 0.00 0.00 0.00 3.46
974 1072 0.470080 GGATGGATCGGAGTGGAGGA 60.470 60.000 0.00 0.00 0.00 3.71
976 1074 1.476007 GGGGATGGATCGGAGTGGAG 61.476 65.000 0.00 0.00 0.00 3.86
985 1083 1.284313 GGGAGATCTGGGGATGGATC 58.716 60.000 0.00 0.00 31.46 3.36
990 1088 0.104725 GGACTGGGAGATCTGGGGAT 60.105 60.000 0.00 0.00 34.45 3.85
991 1089 1.314867 GGACTGGGAGATCTGGGGA 59.685 63.158 0.00 0.00 0.00 4.81
992 1090 0.621571 TTGGACTGGGAGATCTGGGG 60.622 60.000 0.00 0.00 0.00 4.96
993 1091 0.835941 CTTGGACTGGGAGATCTGGG 59.164 60.000 0.00 0.00 0.00 4.45
994 1092 1.871418 TCTTGGACTGGGAGATCTGG 58.129 55.000 0.00 0.00 0.00 3.86
996 1094 3.457749 GGATTTCTTGGACTGGGAGATCT 59.542 47.826 0.00 0.00 0.00 2.75
997 1095 3.457749 AGGATTTCTTGGACTGGGAGATC 59.542 47.826 0.00 0.00 0.00 2.75
998 1096 3.457749 GAGGATTTCTTGGACTGGGAGAT 59.542 47.826 0.00 0.00 0.00 2.75
999 1097 2.840651 GAGGATTTCTTGGACTGGGAGA 59.159 50.000 0.00 0.00 0.00 3.71
1000 1098 2.092699 GGAGGATTTCTTGGACTGGGAG 60.093 54.545 0.00 0.00 0.00 4.30
1003 1101 1.064389 GGGGAGGATTTCTTGGACTGG 60.064 57.143 0.00 0.00 0.00 4.00
1005 1103 2.200955 GAGGGGAGGATTTCTTGGACT 58.799 52.381 0.00 0.00 0.00 3.85
1006 1104 1.916181 TGAGGGGAGGATTTCTTGGAC 59.084 52.381 0.00 0.00 0.00 4.02
1007 1105 1.916181 GTGAGGGGAGGATTTCTTGGA 59.084 52.381 0.00 0.00 0.00 3.53
1013 1111 0.477597 TGGTGGTGAGGGGAGGATTT 60.478 55.000 0.00 0.00 0.00 2.17
1021 1119 1.715019 TTCCTTGGTGGTGGTGAGGG 61.715 60.000 0.00 0.00 37.07 4.30
1023 1121 0.764890 TCTTCCTTGGTGGTGGTGAG 59.235 55.000 0.00 0.00 37.07 3.51
1024 1122 1.217916 TTCTTCCTTGGTGGTGGTGA 58.782 50.000 0.00 0.00 37.07 4.02
1026 1124 1.075536 GGATTCTTCCTTGGTGGTGGT 59.924 52.381 0.00 0.00 39.14 4.16
1028 1126 1.355720 AGGGATTCTTCCTTGGTGGTG 59.644 52.381 0.00 0.00 42.20 4.17
1029 1127 1.760405 AGGGATTCTTCCTTGGTGGT 58.240 50.000 0.00 0.00 42.20 4.16
1038 1136 0.109532 GGCTGGGCTAGGGATTCTTC 59.890 60.000 0.00 0.00 0.00 2.87
1042 1140 2.778717 GGGGCTGGGCTAGGGATT 60.779 66.667 0.00 0.00 0.00 3.01
1453 1564 0.030603 CTTAGGCCCTCTCTCCCCTT 60.031 60.000 0.00 0.00 0.00 3.95
1484 1599 0.104487 ACGCCTGCAGATGAGATGAG 59.896 55.000 17.39 0.19 0.00 2.90
1487 1602 1.612950 CTCTACGCCTGCAGATGAGAT 59.387 52.381 17.39 0.00 0.00 2.75
1515 1668 0.179225 GCCAACATAGCACGAACACG 60.179 55.000 0.00 0.00 0.00 4.49
1521 1674 0.443869 GACACAGCCAACATAGCACG 59.556 55.000 0.00 0.00 0.00 5.34
1522 1675 1.522668 TGACACAGCCAACATAGCAC 58.477 50.000 0.00 0.00 0.00 4.40
1523 1676 2.086094 CATGACACAGCCAACATAGCA 58.914 47.619 0.00 0.00 0.00 3.49
1524 1677 2.086869 ACATGACACAGCCAACATAGC 58.913 47.619 0.00 0.00 0.00 2.97
1525 1678 3.127548 GGAACATGACACAGCCAACATAG 59.872 47.826 0.00 0.00 0.00 2.23
1526 1679 3.081061 GGAACATGACACAGCCAACATA 58.919 45.455 0.00 0.00 0.00 2.29
1527 1680 1.888512 GGAACATGACACAGCCAACAT 59.111 47.619 0.00 0.00 0.00 2.71
1528 1681 1.317613 GGAACATGACACAGCCAACA 58.682 50.000 0.00 0.00 0.00 3.33
1531 1684 1.133823 AGTTGGAACATGACACAGCCA 60.134 47.619 0.00 0.00 39.30 4.75
1532 1685 1.267806 CAGTTGGAACATGACACAGCC 59.732 52.381 0.00 0.00 39.30 4.85
1534 1687 4.276678 ACATTCAGTTGGAACATGACACAG 59.723 41.667 0.00 0.00 39.30 3.66
1536 1689 4.836125 ACATTCAGTTGGAACATGACAC 57.164 40.909 0.00 0.00 39.30 3.67
1539 1692 7.765819 CAGATACTACATTCAGTTGGAACATGA 59.234 37.037 0.00 0.00 39.30 3.07
1540 1693 7.765819 TCAGATACTACATTCAGTTGGAACATG 59.234 37.037 0.00 0.00 39.30 3.21
1543 1696 7.766278 ACATCAGATACTACATTCAGTTGGAAC 59.234 37.037 0.00 0.00 38.60 3.62
1647 1856 4.023193 ACCATTCGTTGATTTGTGAGGTTC 60.023 41.667 0.00 0.00 0.00 3.62
1710 1924 6.489361 TCGGTTGGTACTTTTGGCTTAAATAA 59.511 34.615 0.00 0.00 0.00 1.40
1711 1925 6.002704 TCGGTTGGTACTTTTGGCTTAAATA 58.997 36.000 0.00 0.00 0.00 1.40
1712 1926 4.828387 TCGGTTGGTACTTTTGGCTTAAAT 59.172 37.500 0.00 0.00 0.00 1.40
1721 2498 6.320418 AGACTGAATTTTCGGTTGGTACTTTT 59.680 34.615 6.25 0.00 46.28 2.27
1727 2504 3.551846 ACAGACTGAATTTTCGGTTGGT 58.448 40.909 10.08 5.39 46.28 3.67
1756 2533 1.089920 AGCAACCGAAGCATGACATC 58.910 50.000 0.00 0.00 0.00 3.06
1776 2553 4.806640 TGTGACATTAGCATGACAGAGA 57.193 40.909 0.00 0.00 36.01 3.10
1801 2584 5.100943 GTCCACTAATCTTCGAAGTACACC 58.899 45.833 23.85 2.37 0.00 4.16
1810 2594 8.076178 ACAAAAATTTCAGTCCACTAATCTTCG 58.924 33.333 0.00 0.00 0.00 3.79
1815 2599 9.313118 GTCAAACAAAAATTTCAGTCCACTAAT 57.687 29.630 0.00 0.00 0.00 1.73
1828 2612 7.602265 AGTTGCTGTACTTGTCAAACAAAAATT 59.398 29.630 0.00 0.00 37.69 1.82
1859 2643 4.081917 AGTTGCTTCGGTTTCAAAAGGAAA 60.082 37.500 0.00 0.00 43.07 3.13
1860 2644 3.445805 AGTTGCTTCGGTTTCAAAAGGAA 59.554 39.130 0.00 0.00 0.00 3.36
1861 2645 3.020984 AGTTGCTTCGGTTTCAAAAGGA 58.979 40.909 0.00 0.00 0.00 3.36
1862 2646 3.115554 CAGTTGCTTCGGTTTCAAAAGG 58.884 45.455 0.00 0.00 0.00 3.11
1863 2647 4.027572 TCAGTTGCTTCGGTTTCAAAAG 57.972 40.909 0.00 0.00 0.00 2.27
1864 2648 4.082463 ACTTCAGTTGCTTCGGTTTCAAAA 60.082 37.500 0.00 0.00 0.00 2.44
1865 2649 3.442273 ACTTCAGTTGCTTCGGTTTCAAA 59.558 39.130 0.00 0.00 0.00 2.69
1866 2650 3.013921 ACTTCAGTTGCTTCGGTTTCAA 58.986 40.909 0.00 0.00 0.00 2.69
1867 2651 2.639065 ACTTCAGTTGCTTCGGTTTCA 58.361 42.857 0.00 0.00 0.00 2.69
1868 2652 3.692791 AACTTCAGTTGCTTCGGTTTC 57.307 42.857 0.00 0.00 36.80 2.78
1869 2653 3.694566 AGAAACTTCAGTTGCTTCGGTTT 59.305 39.130 0.00 0.00 40.99 3.27
1870 2654 3.065371 CAGAAACTTCAGTTGCTTCGGTT 59.935 43.478 0.00 0.00 40.99 4.44
1871 2655 2.614057 CAGAAACTTCAGTTGCTTCGGT 59.386 45.455 0.00 0.00 40.99 4.69
1872 2656 2.872245 TCAGAAACTTCAGTTGCTTCGG 59.128 45.455 0.00 0.00 40.99 4.30
1873 2657 4.536364 TTCAGAAACTTCAGTTGCTTCG 57.464 40.909 0.00 0.00 40.99 3.79
1874 2658 7.704047 AGAAATTTCAGAAACTTCAGTTGCTTC 59.296 33.333 19.99 0.00 40.99 3.86
1875 2659 7.550712 AGAAATTTCAGAAACTTCAGTTGCTT 58.449 30.769 19.99 0.00 40.99 3.91
1876 2660 7.105241 AGAAATTTCAGAAACTTCAGTTGCT 57.895 32.000 19.99 0.00 44.55 3.91
1898 2691 5.187772 ACATTCAGTAGATGGTACTGCAAGA 59.812 40.000 7.22 0.00 43.30 3.02
1909 2705 8.498054 AATAACACCAAGACATTCAGTAGATG 57.502 34.615 0.00 0.00 0.00 2.90
1910 2706 8.543774 AGAATAACACCAAGACATTCAGTAGAT 58.456 33.333 0.00 0.00 0.00 1.98
1920 2716 3.556213 CGGTCCAGAATAACACCAAGACA 60.556 47.826 0.00 0.00 0.00 3.41
1938 2773 1.438651 TACAGCAAATGCAGACGGTC 58.561 50.000 8.28 0.00 45.16 4.79
1942 2777 4.083581 ACGAAATACAGCAAATGCAGAC 57.916 40.909 8.28 0.00 45.16 3.51
1944 2779 4.793216 GGTAACGAAATACAGCAAATGCAG 59.207 41.667 8.28 1.87 45.16 4.41
1962 3404 6.016276 ACCAATGAAGAATGAACACTGGTAAC 60.016 38.462 0.00 0.00 41.27 2.50
1964 3406 5.473162 CACCAATGAAGAATGAACACTGGTA 59.527 40.000 0.00 0.00 41.16 3.25
1978 3420 2.624838 ACTGACAAAGCCACCAATGAAG 59.375 45.455 0.00 0.00 0.00 3.02
2010 3452 0.892814 ACTGAAAGAAGCTGCCCAGC 60.893 55.000 12.17 12.17 46.68 4.85
2011 3453 1.613836 AACTGAAAGAAGCTGCCCAG 58.386 50.000 0.00 5.15 37.43 4.45
2027 3469 4.640201 ACGCAACAAGCCATCATATTAACT 59.360 37.500 0.00 0.00 41.38 2.24
2028 3470 4.920376 ACGCAACAAGCCATCATATTAAC 58.080 39.130 0.00 0.00 41.38 2.01
2031 3473 4.158394 AGAAACGCAACAAGCCATCATATT 59.842 37.500 0.00 0.00 41.38 1.28
2036 3478 2.484264 AGTAGAAACGCAACAAGCCATC 59.516 45.455 0.00 0.00 41.38 3.51
2038 3480 1.601903 CAGTAGAAACGCAACAAGCCA 59.398 47.619 0.00 0.00 41.38 4.75
2039 3481 1.871039 TCAGTAGAAACGCAACAAGCC 59.129 47.619 0.00 0.00 41.38 4.35
2062 3506 4.768659 CTGCAAGCAGAAAGATACGTAG 57.231 45.455 16.75 0.00 46.30 3.51
2075 3519 6.649155 TCCTATTGTATAAAGTCTGCAAGCA 58.351 36.000 0.00 0.00 0.00 3.91
2110 3608 9.929180 ATTCGTGACATAACTACATAAGCATAT 57.071 29.630 0.00 0.00 0.00 1.78
2118 3616 9.424319 GATTGGATATTCGTGACATAACTACAT 57.576 33.333 0.00 0.00 0.00 2.29
2120 3618 9.477484 AAGATTGGATATTCGTGACATAACTAC 57.523 33.333 0.00 0.00 0.00 2.73
2133 3631 9.921637 ATAGAGTCTTCGAAAGATTGGATATTC 57.078 33.333 0.00 0.00 40.18 1.75
2148 3646 5.358442 TCAGGAGAGGAAAATAGAGTCTTCG 59.642 44.000 0.00 0.00 0.00 3.79
2162 3661 5.690865 TGCTTTTACTTTTTCAGGAGAGGA 58.309 37.500 0.00 0.00 0.00 3.71
2174 3804 5.275067 TGCAATGGTCTTGCTTTTACTTT 57.725 34.783 10.87 0.00 45.13 2.66
2175 3805 4.935352 TGCAATGGTCTTGCTTTTACTT 57.065 36.364 10.87 0.00 45.13 2.24
2179 3813 6.290294 AGAATATGCAATGGTCTTGCTTTT 57.710 33.333 10.87 2.87 45.13 2.27
2184 3818 5.591472 TCAGGAAGAATATGCAATGGTCTTG 59.409 40.000 9.28 1.97 32.84 3.02
2194 3828 9.331282 ACAGTTTAATAGTCAGGAAGAATATGC 57.669 33.333 0.00 0.00 37.56 3.14
2213 3927 7.866898 TGCGAATTACACTACAACTACAGTTTA 59.133 33.333 0.00 0.00 35.83 2.01
2216 3930 5.775686 TGCGAATTACACTACAACTACAGT 58.224 37.500 0.00 0.00 0.00 3.55
2217 3931 6.887376 ATGCGAATTACACTACAACTACAG 57.113 37.500 0.00 0.00 0.00 2.74
2218 3932 7.541162 AGTATGCGAATTACACTACAACTACA 58.459 34.615 0.00 0.00 0.00 2.74
2219 3933 7.982371 AGTATGCGAATTACACTACAACTAC 57.018 36.000 0.00 0.00 0.00 2.73
2220 3934 8.991243 AAAGTATGCGAATTACACTACAACTA 57.009 30.769 0.00 0.00 0.00 2.24
2221 3935 7.601130 TGAAAGTATGCGAATTACACTACAACT 59.399 33.333 0.00 0.00 0.00 3.16
2222 3936 7.735500 TGAAAGTATGCGAATTACACTACAAC 58.264 34.615 0.00 0.00 0.00 3.32
2223 3937 7.892778 TGAAAGTATGCGAATTACACTACAA 57.107 32.000 0.00 0.00 0.00 2.41
2236 3950 6.197096 GGCTTAACAATTGATGAAAGTATGCG 59.803 38.462 13.59 0.00 32.06 4.73
2237 4203 7.035004 TGGCTTAACAATTGATGAAAGTATGC 58.965 34.615 13.59 0.00 32.06 3.14
2241 4207 6.491403 AGACTGGCTTAACAATTGATGAAAGT 59.509 34.615 13.59 6.57 32.06 2.66
2242 4208 6.917533 AGACTGGCTTAACAATTGATGAAAG 58.082 36.000 13.59 10.27 0.00 2.62
2362 4348 7.912056 TTTCAGTGAGAAATCTATCCAGTTG 57.088 36.000 0.00 0.00 41.17 3.16
2363 4351 8.954350 CATTTTCAGTGAGAAATCTATCCAGTT 58.046 33.333 0.00 0.00 45.15 3.16
2388 4381 0.394565 CCCGGGCAATTTTGGAAACA 59.605 50.000 8.08 0.00 39.83 2.83
2404 4397 0.250295 TTCACTGAAGCTGGAACCCG 60.250 55.000 0.00 0.00 0.00 5.28
2410 4403 2.486982 CCAAGACATTCACTGAAGCTGG 59.513 50.000 0.00 0.00 0.00 4.85
2517 4514 7.919091 CAGCAGCTTCACAATTATACATTGAAT 59.081 33.333 0.00 0.00 33.51 2.57
2531 4550 1.005748 CCGAGTCAGCAGCTTCACA 60.006 57.895 0.00 0.00 0.00 3.58
2533 4552 2.659016 CCCGAGTCAGCAGCTTCA 59.341 61.111 0.00 0.00 0.00 3.02
2543 4562 0.747283 TAAGTCGAGGAGCCCGAGTC 60.747 60.000 7.77 0.00 38.58 3.36
2544 4563 0.323178 TTAAGTCGAGGAGCCCGAGT 60.323 55.000 0.00 0.00 40.95 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.