Multiple sequence alignment - TraesCS6D01G061000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G061000 chr6D 100.000 2255 0 0 1 2255 28633628 28635882 0.000000e+00 4165.0
1 TraesCS6D01G061000 chr6D 79.769 1038 99 45 615 1592 28628156 28629142 0.000000e+00 651.0
2 TraesCS6D01G061000 chr6A 85.738 1220 78 35 427 1592 34040178 34039001 0.000000e+00 1201.0
3 TraesCS6D01G061000 chr6A 78.929 878 91 39 618 1469 34071600 34070791 5.560000e-141 510.0
4 TraesCS6D01G061000 chr6A 96.364 55 1 1 376 429 34041484 34041430 3.080000e-14 89.8
5 TraesCS6D01G061000 chr6B 87.797 967 51 21 427 1357 62146976 62146041 0.000000e+00 1070.0
6 TraesCS6D01G061000 chr6B 82.288 638 62 25 1001 1592 62213393 62212761 2.580000e-139 505.0
7 TraesCS6D01G061000 chr6B 83.629 507 41 18 1001 1470 62179042 62178541 2.660000e-119 438.0
8 TraesCS6D01G061000 chr6B 79.814 644 67 21 1000 1592 62154926 62154295 5.800000e-111 411.0
9 TraesCS6D01G061000 chr6B 84.918 305 38 3 76 373 114134707 114134404 3.640000e-78 302.0
10 TraesCS6D01G061000 chr6B 81.651 218 23 8 644 861 62179302 62179102 4.980000e-37 165.0
11 TraesCS6D01G061000 chr6B 79.638 221 14 14 644 861 62213654 62213462 1.820000e-26 130.0
12 TraesCS6D01G061000 chr6B 94.828 58 1 1 1537 1592 62178387 62178330 3.080000e-14 89.8
13 TraesCS6D01G061000 chr5A 94.033 419 22 3 1603 2018 622292010 622291592 1.140000e-177 632.0
14 TraesCS6D01G061000 chr5A 93.301 418 26 2 1603 2018 646839141 646839558 1.140000e-172 616.0
15 TraesCS6D01G061000 chr5A 85.859 297 33 6 77 367 660791223 660790930 7.820000e-80 307.0
16 TraesCS6D01G061000 chr5A 86.920 237 20 3 2019 2255 622291410 622291185 2.870000e-64 255.0
17 TraesCS6D01G061000 chr5A 86.076 237 22 3 2019 2255 646839746 646839971 6.220000e-61 244.0
18 TraesCS6D01G061000 chr5D 94.005 417 20 4 1606 2018 291299240 291299655 5.290000e-176 627.0
19 TraesCS6D01G061000 chr1D 93.976 415 23 2 1606 2018 3983495 3983909 5.290000e-176 627.0
20 TraesCS6D01G061000 chr1D 87.342 237 19 3 2019 2255 3984082 3984307 6.180000e-66 261.0
21 TraesCS6D01G061000 chr2A 93.253 415 25 3 1606 2018 744256647 744256234 1.920000e-170 608.0
22 TraesCS6D01G061000 chr2A 92.289 415 24 3 1606 2018 13608394 13608802 1.160000e-162 582.0
23 TraesCS6D01G061000 chr2A 87.342 237 19 3 2019 2255 744256059 744255834 6.180000e-66 261.0
24 TraesCS6D01G061000 chr4A 92.363 419 29 3 1602 2018 497877717 497877300 5.360000e-166 593.0
25 TraesCS6D01G061000 chr4A 85.859 297 36 4 76 367 701503651 701503356 6.050000e-81 311.0
26 TraesCS6D01G061000 chr4A 85.382 301 38 6 75 371 70323685 70323387 7.820000e-80 307.0
27 TraesCS6D01G061000 chr4A 86.920 237 19 4 2019 2255 497877136 497876912 2.870000e-64 255.0
28 TraesCS6D01G061000 chr4A 94.531 128 7 0 2020 2147 734465987 734465860 4.910000e-47 198.0
29 TraesCS6D01G061000 chr7B 91.807 415 32 2 1606 2018 638499185 638499599 5.400000e-161 577.0
30 TraesCS6D01G061000 chr7B 92.827 237 15 1 2019 2255 638499757 638499991 2.140000e-90 342.0
31 TraesCS6D01G061000 chr5B 91.807 415 28 4 1606 2018 118543271 118543681 6.990000e-160 573.0
32 TraesCS6D01G061000 chr5B 92.969 128 9 0 2020 2147 118543891 118544018 1.060000e-43 187.0
33 TraesCS6D01G061000 chr3B 94.093 237 9 3 2019 2255 30344771 30345002 2.750000e-94 355.0
34 TraesCS6D01G061000 chr3B 86.552 290 31 4 77 359 368612341 368612629 1.680000e-81 313.0
35 TraesCS6D01G061000 chr3B 85.811 296 37 2 77 368 56138417 56138711 2.180000e-80 309.0
36 TraesCS6D01G061000 chr3B 93.122 189 12 1 2067 2255 84755550 84755737 2.210000e-70 276.0
37 TraesCS6D01G061000 chr4B 93.249 237 16 0 2019 2255 406229801 406230037 1.280000e-92 350.0
38 TraesCS6D01G061000 chr3D 85.953 299 40 2 74 371 595209151 595208854 3.610000e-83 318.0
39 TraesCS6D01G061000 chr7D 85.333 300 37 2 77 370 40716230 40716528 1.010000e-78 303.0
40 TraesCS6D01G061000 chr7D 85.911 291 32 4 76 358 165122584 165122873 3.640000e-78 302.0
41 TraesCS6D01G061000 chr2B 92.126 127 7 1 2021 2147 17522022 17522145 2.300000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G061000 chr6D 28633628 28635882 2254 False 4165.000000 4165 100.000000 1 2255 1 chr6D.!!$F2 2254
1 TraesCS6D01G061000 chr6D 28628156 28629142 986 False 651.000000 651 79.769000 615 1592 1 chr6D.!!$F1 977
2 TraesCS6D01G061000 chr6A 34039001 34041484 2483 True 645.400000 1201 91.051000 376 1592 2 chr6A.!!$R2 1216
3 TraesCS6D01G061000 chr6A 34070791 34071600 809 True 510.000000 510 78.929000 618 1469 1 chr6A.!!$R1 851
4 TraesCS6D01G061000 chr6B 62146041 62146976 935 True 1070.000000 1070 87.797000 427 1357 1 chr6B.!!$R1 930
5 TraesCS6D01G061000 chr6B 62154295 62154926 631 True 411.000000 411 79.814000 1000 1592 1 chr6B.!!$R2 592
6 TraesCS6D01G061000 chr6B 62212761 62213654 893 True 317.500000 505 80.963000 644 1592 2 chr6B.!!$R5 948
7 TraesCS6D01G061000 chr6B 62178330 62179302 972 True 230.933333 438 86.702667 644 1592 3 chr6B.!!$R4 948
8 TraesCS6D01G061000 chr5A 622291185 622292010 825 True 443.500000 632 90.476500 1603 2255 2 chr5A.!!$R2 652
9 TraesCS6D01G061000 chr5A 646839141 646839971 830 False 430.000000 616 89.688500 1603 2255 2 chr5A.!!$F1 652
10 TraesCS6D01G061000 chr1D 3983495 3984307 812 False 444.000000 627 90.659000 1606 2255 2 chr1D.!!$F1 649
11 TraesCS6D01G061000 chr2A 744255834 744256647 813 True 434.500000 608 90.297500 1606 2255 2 chr2A.!!$R1 649
12 TraesCS6D01G061000 chr4A 497876912 497877717 805 True 424.000000 593 89.641500 1602 2255 2 chr4A.!!$R4 653
13 TraesCS6D01G061000 chr7B 638499185 638499991 806 False 459.500000 577 92.317000 1606 2255 2 chr7B.!!$F1 649
14 TraesCS6D01G061000 chr5B 118543271 118544018 747 False 380.000000 573 92.388000 1606 2147 2 chr5B.!!$F1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 250 0.037232 GGAAACGTCTCCTCCCACTG 60.037 60.0 0.0 0.0 32.21 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1913 3460 1.00176 ACTACCCTGGACATCGCCT 59.998 57.895 0.0 0.0 0.0 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.713902 ACCAGCTTGTCTTCCAGTG 57.286 52.632 0.00 0.00 0.00 3.66
19 20 0.109342 ACCAGCTTGTCTTCCAGTGG 59.891 55.000 1.40 1.40 0.00 4.00
20 21 0.109342 CCAGCTTGTCTTCCAGTGGT 59.891 55.000 9.54 0.00 0.00 4.16
21 22 1.517242 CAGCTTGTCTTCCAGTGGTC 58.483 55.000 9.54 0.00 0.00 4.02
22 23 0.398318 AGCTTGTCTTCCAGTGGTCC 59.602 55.000 9.54 0.00 0.00 4.46
23 24 0.398318 GCTTGTCTTCCAGTGGTCCT 59.602 55.000 9.54 0.00 0.00 3.85
24 25 1.202818 GCTTGTCTTCCAGTGGTCCTT 60.203 52.381 9.54 0.00 0.00 3.36
25 26 2.772287 CTTGTCTTCCAGTGGTCCTTC 58.228 52.381 9.54 0.00 0.00 3.46
26 27 2.103153 TGTCTTCCAGTGGTCCTTCT 57.897 50.000 9.54 0.00 0.00 2.85
27 28 1.694150 TGTCTTCCAGTGGTCCTTCTG 59.306 52.381 9.54 7.40 0.00 3.02
31 32 1.376466 CCAGTGGTCCTTCTGGTGG 59.624 63.158 19.08 2.69 44.19 4.61
32 33 1.376466 CAGTGGTCCTTCTGGTGGG 59.624 63.158 6.72 0.00 34.23 4.61
33 34 1.847968 AGTGGTCCTTCTGGTGGGG 60.848 63.158 0.00 0.00 34.23 4.96
34 35 2.154074 GTGGTCCTTCTGGTGGGGT 61.154 63.158 0.00 0.00 34.23 4.95
35 36 1.846124 TGGTCCTTCTGGTGGGGTC 60.846 63.158 0.00 0.00 34.23 4.46
36 37 2.663196 GTCCTTCTGGTGGGGTCG 59.337 66.667 0.00 0.00 34.23 4.79
37 38 2.203182 TCCTTCTGGTGGGGTCGT 59.797 61.111 0.00 0.00 34.23 4.34
38 39 1.911766 TCCTTCTGGTGGGGTCGTC 60.912 63.158 0.00 0.00 34.23 4.20
39 40 2.261671 CTTCTGGTGGGGTCGTCG 59.738 66.667 0.00 0.00 0.00 5.12
40 41 2.522436 TTCTGGTGGGGTCGTCGT 60.522 61.111 0.00 0.00 0.00 4.34
41 42 2.765250 CTTCTGGTGGGGTCGTCGTG 62.765 65.000 0.00 0.00 0.00 4.35
42 43 4.373116 CTGGTGGGGTCGTCGTGG 62.373 72.222 0.00 0.00 0.00 4.94
60 61 4.436998 CGGGCGTGACAGGGAGAC 62.437 72.222 0.00 0.00 0.00 3.36
61 62 4.436998 GGGCGTGACAGGGAGACG 62.437 72.222 0.00 0.00 36.18 4.18
64 65 2.179517 CGTGACAGGGAGACGCTC 59.820 66.667 0.00 0.00 0.00 5.03
65 66 2.336478 CGTGACAGGGAGACGCTCT 61.336 63.158 6.78 0.00 0.00 4.09
66 67 1.509004 GTGACAGGGAGACGCTCTC 59.491 63.158 6.78 6.63 42.66 3.20
67 68 1.074951 TGACAGGGAGACGCTCTCA 59.925 57.895 14.26 5.36 45.12 3.27
71 72 3.377656 GGGAGACGCTCTCACCAA 58.622 61.111 14.26 0.00 45.12 3.67
72 73 1.079750 GGGAGACGCTCTCACCAAC 60.080 63.158 14.26 0.74 45.12 3.77
73 74 1.536943 GGGAGACGCTCTCACCAACT 61.537 60.000 14.26 0.00 45.12 3.16
74 75 0.109039 GGAGACGCTCTCACCAACTC 60.109 60.000 14.26 0.00 45.12 3.01
75 76 0.885196 GAGACGCTCTCACCAACTCT 59.115 55.000 9.30 0.00 42.90 3.24
76 77 1.271102 GAGACGCTCTCACCAACTCTT 59.729 52.381 9.30 0.00 42.90 2.85
77 78 1.689273 AGACGCTCTCACCAACTCTTT 59.311 47.619 0.00 0.00 0.00 2.52
78 79 2.103263 AGACGCTCTCACCAACTCTTTT 59.897 45.455 0.00 0.00 0.00 2.27
79 80 2.872858 GACGCTCTCACCAACTCTTTTT 59.127 45.455 0.00 0.00 0.00 1.94
102 103 7.452630 TTTTTAACACGGTACAAATTCAAGC 57.547 32.000 0.00 0.00 0.00 4.01
103 104 2.961522 ACACGGTACAAATTCAAGCG 57.038 45.000 0.00 5.13 39.81 4.68
104 105 1.069500 ACACGGTACAAATTCAAGCGC 60.069 47.619 0.00 0.00 37.62 5.92
105 106 1.196808 CACGGTACAAATTCAAGCGCT 59.803 47.619 2.64 2.64 37.62 5.92
106 107 1.463444 ACGGTACAAATTCAAGCGCTC 59.537 47.619 12.06 0.00 37.62 5.03
107 108 1.463056 CGGTACAAATTCAAGCGCTCA 59.537 47.619 12.06 0.00 0.00 4.26
108 109 2.095853 CGGTACAAATTCAAGCGCTCAT 59.904 45.455 12.06 0.00 0.00 2.90
109 110 3.308595 CGGTACAAATTCAAGCGCTCATA 59.691 43.478 12.06 0.00 0.00 2.15
110 111 4.024893 CGGTACAAATTCAAGCGCTCATAT 60.025 41.667 12.06 0.62 0.00 1.78
111 112 5.176774 CGGTACAAATTCAAGCGCTCATATA 59.823 40.000 12.06 0.00 0.00 0.86
112 113 6.363473 GGTACAAATTCAAGCGCTCATATAC 58.637 40.000 12.06 5.78 0.00 1.47
113 114 6.018262 GGTACAAATTCAAGCGCTCATATACA 60.018 38.462 12.06 0.00 0.00 2.29
114 115 5.810525 ACAAATTCAAGCGCTCATATACAC 58.189 37.500 12.06 0.00 0.00 2.90
115 116 4.715520 AATTCAAGCGCTCATATACACG 57.284 40.909 12.06 0.00 0.00 4.49
119 120 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
120 121 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
121 122 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
122 123 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
123 124 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
124 125 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
125 126 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
126 127 3.972403 TCATATACACGCGCATACACTT 58.028 40.909 5.73 0.00 0.00 3.16
127 128 5.110940 TCATATACACGCGCATACACTTA 57.889 39.130 5.73 0.00 0.00 2.24
128 129 4.913345 TCATATACACGCGCATACACTTAC 59.087 41.667 5.73 0.00 0.00 2.34
129 130 2.925578 TACACGCGCATACACTTACT 57.074 45.000 5.73 0.00 0.00 2.24
130 131 2.074547 ACACGCGCATACACTTACTT 57.925 45.000 5.73 0.00 0.00 2.24
131 132 1.990563 ACACGCGCATACACTTACTTC 59.009 47.619 5.73 0.00 0.00 3.01
132 133 2.259618 CACGCGCATACACTTACTTCT 58.740 47.619 5.73 0.00 0.00 2.85
133 134 3.119743 ACACGCGCATACACTTACTTCTA 60.120 43.478 5.73 0.00 0.00 2.10
134 135 4.042398 CACGCGCATACACTTACTTCTAT 58.958 43.478 5.73 0.00 0.00 1.98
135 136 4.042398 ACGCGCATACACTTACTTCTATG 58.958 43.478 5.73 0.00 0.00 2.23
136 137 4.201980 ACGCGCATACACTTACTTCTATGA 60.202 41.667 5.73 0.00 0.00 2.15
137 138 4.738252 CGCGCATACACTTACTTCTATGAA 59.262 41.667 8.75 0.00 0.00 2.57
138 139 5.331607 CGCGCATACACTTACTTCTATGAAC 60.332 44.000 8.75 0.00 0.00 3.18
139 140 5.331607 GCGCATACACTTACTTCTATGAACG 60.332 44.000 0.30 0.00 0.00 3.95
140 141 5.331607 CGCATACACTTACTTCTATGAACGC 60.332 44.000 0.00 0.00 0.00 4.84
141 142 5.518847 GCATACACTTACTTCTATGAACGCA 59.481 40.000 0.00 0.00 0.00 5.24
142 143 6.508088 GCATACACTTACTTCTATGAACGCAC 60.508 42.308 0.00 0.00 0.00 5.34
143 144 4.878439 ACACTTACTTCTATGAACGCACA 58.122 39.130 0.00 0.00 0.00 4.57
144 145 4.684703 ACACTTACTTCTATGAACGCACAC 59.315 41.667 0.00 0.00 0.00 3.82
145 146 4.091509 CACTTACTTCTATGAACGCACACC 59.908 45.833 0.00 0.00 0.00 4.16
146 147 2.094762 ACTTCTATGAACGCACACCC 57.905 50.000 0.00 0.00 0.00 4.61
147 148 1.623811 ACTTCTATGAACGCACACCCT 59.376 47.619 0.00 0.00 0.00 4.34
148 149 2.829720 ACTTCTATGAACGCACACCCTA 59.170 45.455 0.00 0.00 0.00 3.53
149 150 2.953466 TCTATGAACGCACACCCTAC 57.047 50.000 0.00 0.00 0.00 3.18
150 151 1.479323 TCTATGAACGCACACCCTACC 59.521 52.381 0.00 0.00 0.00 3.18
151 152 0.538118 TATGAACGCACACCCTACCC 59.462 55.000 0.00 0.00 0.00 3.69
152 153 2.046604 GAACGCACACCCTACCCC 60.047 66.667 0.00 0.00 0.00 4.95
153 154 2.528378 AACGCACACCCTACCCCT 60.528 61.111 0.00 0.00 0.00 4.79
154 155 1.229272 AACGCACACCCTACCCCTA 60.229 57.895 0.00 0.00 0.00 3.53
155 156 1.262640 AACGCACACCCTACCCCTAG 61.263 60.000 0.00 0.00 0.00 3.02
156 157 2.432300 CGCACACCCTACCCCTAGG 61.432 68.421 0.06 0.06 39.67 3.02
157 158 1.002533 GCACACCCTACCCCTAGGA 59.997 63.158 11.48 0.00 42.34 2.94
158 159 1.049289 GCACACCCTACCCCTAGGAG 61.049 65.000 11.48 0.00 42.34 3.69
159 160 1.049289 CACACCCTACCCCTAGGAGC 61.049 65.000 11.48 0.00 42.34 4.70
160 161 1.313475 CACCCTACCCCTAGGAGCA 59.687 63.158 11.48 0.00 42.34 4.26
161 162 1.049289 CACCCTACCCCTAGGAGCAC 61.049 65.000 11.48 0.00 42.34 4.40
162 163 1.459730 CCCTACCCCTAGGAGCACC 60.460 68.421 11.48 0.00 42.34 5.01
164 165 0.470268 CCTACCCCTAGGAGCACCTC 60.470 65.000 11.48 0.00 46.43 3.85
172 173 4.600207 GGAGCACCTCCGAAAGAC 57.400 61.111 0.00 0.00 41.08 3.01
173 174 1.976112 GGAGCACCTCCGAAAGACT 59.024 57.895 0.00 0.00 41.08 3.24
174 175 0.390472 GGAGCACCTCCGAAAGACTG 60.390 60.000 0.00 0.00 41.08 3.51
175 176 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
176 177 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
177 178 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
178 179 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
179 180 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
180 181 1.595993 CCTCCGAAAGACTGAGCCGA 61.596 60.000 0.00 0.00 0.00 5.54
181 182 0.456995 CTCCGAAAGACTGAGCCGAC 60.457 60.000 0.00 0.00 0.00 4.79
182 183 1.176619 TCCGAAAGACTGAGCCGACA 61.177 55.000 0.00 0.00 0.00 4.35
183 184 0.108615 CCGAAAGACTGAGCCGACAT 60.109 55.000 0.00 0.00 0.00 3.06
184 185 1.134367 CCGAAAGACTGAGCCGACATA 59.866 52.381 0.00 0.00 0.00 2.29
185 186 2.223829 CCGAAAGACTGAGCCGACATAT 60.224 50.000 0.00 0.00 0.00 1.78
186 187 3.046390 CGAAAGACTGAGCCGACATATC 58.954 50.000 0.00 0.00 0.00 1.63
187 188 3.489229 CGAAAGACTGAGCCGACATATCA 60.489 47.826 0.00 0.00 0.00 2.15
188 189 4.626042 GAAAGACTGAGCCGACATATCAT 58.374 43.478 0.00 0.00 0.00 2.45
189 190 4.679373 AAGACTGAGCCGACATATCATT 57.321 40.909 0.00 0.00 0.00 2.57
190 191 4.679373 AGACTGAGCCGACATATCATTT 57.321 40.909 0.00 0.00 0.00 2.32
191 192 5.028549 AGACTGAGCCGACATATCATTTT 57.971 39.130 0.00 0.00 0.00 1.82
192 193 6.161855 AGACTGAGCCGACATATCATTTTA 57.838 37.500 0.00 0.00 0.00 1.52
193 194 6.582636 AGACTGAGCCGACATATCATTTTAA 58.417 36.000 0.00 0.00 0.00 1.52
194 195 7.047891 AGACTGAGCCGACATATCATTTTAAA 58.952 34.615 0.00 0.00 0.00 1.52
195 196 7.552687 AGACTGAGCCGACATATCATTTTAAAA 59.447 33.333 2.51 2.51 0.00 1.52
196 197 8.225603 ACTGAGCCGACATATCATTTTAAAAT 57.774 30.769 7.64 7.64 0.00 1.82
197 198 8.686334 ACTGAGCCGACATATCATTTTAAAATT 58.314 29.630 10.77 0.79 0.00 1.82
198 199 8.854979 TGAGCCGACATATCATTTTAAAATTG 57.145 30.769 10.77 9.30 0.00 2.32
199 200 8.681806 TGAGCCGACATATCATTTTAAAATTGA 58.318 29.630 10.77 11.77 0.00 2.57
200 201 8.856490 AGCCGACATATCATTTTAAAATTGAC 57.144 30.769 10.77 6.70 0.00 3.18
201 202 7.643764 AGCCGACATATCATTTTAAAATTGACG 59.356 33.333 19.19 19.19 0.00 4.35
202 203 7.642194 GCCGACATATCATTTTAAAATTGACGA 59.358 33.333 23.83 14.80 29.08 4.20
203 204 9.497030 CCGACATATCATTTTAAAATTGACGAA 57.503 29.630 23.83 11.73 29.08 3.85
225 226 3.494336 CCGTAGGCGTCTCGTCGT 61.494 66.667 0.00 0.00 46.14 4.34
226 227 2.021106 CGTAGGCGTCTCGTCGTC 59.979 66.667 0.00 0.00 36.23 4.20
227 228 2.021106 GTAGGCGTCTCGTCGTCG 59.979 66.667 0.00 0.00 40.52 5.12
228 229 2.125952 TAGGCGTCTCGTCGTCGA 60.126 61.111 4.42 4.42 44.12 4.20
229 230 2.447887 TAGGCGTCTCGTCGTCGAC 61.448 63.158 15.51 15.51 41.35 4.20
248 249 2.363297 GGAAACGTCTCCTCCCACT 58.637 57.895 0.00 0.00 32.21 4.00
249 250 0.037232 GGAAACGTCTCCTCCCACTG 60.037 60.000 0.00 0.00 32.21 3.66
250 251 0.966920 GAAACGTCTCCTCCCACTGA 59.033 55.000 0.00 0.00 0.00 3.41
251 252 1.343465 GAAACGTCTCCTCCCACTGAA 59.657 52.381 0.00 0.00 0.00 3.02
252 253 1.645710 AACGTCTCCTCCCACTGAAT 58.354 50.000 0.00 0.00 0.00 2.57
253 254 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
254 255 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
255 256 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
256 257 0.904865 TCTCCTCCCACTGAATGCGT 60.905 55.000 0.00 0.00 0.00 5.24
257 258 0.460987 CTCCTCCCACTGAATGCGTC 60.461 60.000 0.00 0.00 0.00 5.19
258 259 0.904865 TCCTCCCACTGAATGCGTCT 60.905 55.000 0.00 0.00 0.00 4.18
259 260 0.460987 CCTCCCACTGAATGCGTCTC 60.461 60.000 0.00 0.00 0.00 3.36
260 261 0.803768 CTCCCACTGAATGCGTCTCG 60.804 60.000 0.00 0.00 0.00 4.04
261 262 1.079819 CCCACTGAATGCGTCTCGT 60.080 57.895 0.00 0.00 0.00 4.18
262 263 1.078759 CCCACTGAATGCGTCTCGTC 61.079 60.000 0.00 0.00 0.00 4.20
263 264 1.406219 CCACTGAATGCGTCTCGTCG 61.406 60.000 0.00 0.00 0.00 5.12
264 265 0.454452 CACTGAATGCGTCTCGTCGA 60.454 55.000 0.00 0.00 0.00 4.20
265 266 0.240145 ACTGAATGCGTCTCGTCGAA 59.760 50.000 0.00 0.00 0.00 3.71
266 267 1.335597 ACTGAATGCGTCTCGTCGAAA 60.336 47.619 0.00 0.00 0.00 3.46
267 268 1.719246 CTGAATGCGTCTCGTCGAAAA 59.281 47.619 0.00 0.00 0.00 2.29
268 269 2.333926 TGAATGCGTCTCGTCGAAAAT 58.666 42.857 0.00 0.00 0.00 1.82
269 270 2.734606 TGAATGCGTCTCGTCGAAAATT 59.265 40.909 0.00 0.00 0.00 1.82
270 271 3.181534 TGAATGCGTCTCGTCGAAAATTC 60.182 43.478 0.00 2.88 32.65 2.17
271 272 2.060326 TGCGTCTCGTCGAAAATTCT 57.940 45.000 0.00 0.00 0.00 2.40
272 273 1.719246 TGCGTCTCGTCGAAAATTCTG 59.281 47.619 0.00 0.00 0.00 3.02
273 274 1.983605 GCGTCTCGTCGAAAATTCTGA 59.016 47.619 0.00 0.00 0.00 3.27
274 275 2.407361 GCGTCTCGTCGAAAATTCTGAA 59.593 45.455 0.00 0.00 0.00 3.02
275 276 3.121126 GCGTCTCGTCGAAAATTCTGAAA 60.121 43.478 0.00 0.00 0.00 2.69
276 277 4.434330 GCGTCTCGTCGAAAATTCTGAAAT 60.434 41.667 0.00 0.00 0.00 2.17
277 278 5.220154 GCGTCTCGTCGAAAATTCTGAAATA 60.220 40.000 0.00 0.00 0.00 1.40
278 279 6.669032 GCGTCTCGTCGAAAATTCTGAAATAA 60.669 38.462 0.00 0.00 0.00 1.40
279 280 7.224710 CGTCTCGTCGAAAATTCTGAAATAAA 58.775 34.615 0.00 0.00 0.00 1.40
280 281 7.898309 CGTCTCGTCGAAAATTCTGAAATAAAT 59.102 33.333 0.00 0.00 0.00 1.40
281 282 9.200303 GTCTCGTCGAAAATTCTGAAATAAATC 57.800 33.333 0.00 0.00 0.00 2.17
282 283 8.388103 TCTCGTCGAAAATTCTGAAATAAATCC 58.612 33.333 0.00 0.00 0.00 3.01
283 284 8.035165 TCGTCGAAAATTCTGAAATAAATCCA 57.965 30.769 0.00 0.00 0.00 3.41
284 285 8.175069 TCGTCGAAAATTCTGAAATAAATCCAG 58.825 33.333 0.00 0.00 0.00 3.86
285 286 8.175069 CGTCGAAAATTCTGAAATAAATCCAGA 58.825 33.333 0.00 0.00 35.38 3.86
286 287 9.840427 GTCGAAAATTCTGAAATAAATCCAGAA 57.160 29.630 0.00 0.00 46.76 3.02
295 296 9.734620 TCTGAAATAAATCCAGAAATAAATGCG 57.265 29.630 0.00 0.00 34.38 4.73
296 297 9.734620 CTGAAATAAATCCAGAAATAAATGCGA 57.265 29.630 0.00 0.00 0.00 5.10
297 298 9.734620 TGAAATAAATCCAGAAATAAATGCGAG 57.265 29.630 0.00 0.00 0.00 5.03
298 299 8.579682 AAATAAATCCAGAAATAAATGCGAGC 57.420 30.769 0.00 0.00 0.00 5.03
299 300 5.581126 AAATCCAGAAATAAATGCGAGCA 57.419 34.783 0.00 0.00 0.00 4.26
300 301 4.558538 ATCCAGAAATAAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
301 302 2.682856 TCCAGAAATAAATGCGAGCACC 59.317 45.455 0.00 0.00 0.00 5.01
302 303 2.423185 CCAGAAATAAATGCGAGCACCA 59.577 45.455 0.00 0.00 0.00 4.17
303 304 3.119531 CCAGAAATAAATGCGAGCACCAA 60.120 43.478 0.00 0.00 0.00 3.67
304 305 4.100529 CAGAAATAAATGCGAGCACCAAG 58.899 43.478 0.00 0.00 0.00 3.61
305 306 4.009675 AGAAATAAATGCGAGCACCAAGA 58.990 39.130 0.00 0.00 0.00 3.02
306 307 3.764885 AATAAATGCGAGCACCAAGAC 57.235 42.857 0.00 0.00 0.00 3.01
307 308 2.472695 TAAATGCGAGCACCAAGACT 57.527 45.000 0.00 0.00 0.00 3.24
308 309 1.609208 AAATGCGAGCACCAAGACTT 58.391 45.000 0.00 0.00 0.00 3.01
309 310 1.609208 AATGCGAGCACCAAGACTTT 58.391 45.000 0.00 0.00 0.00 2.66
310 311 0.877071 ATGCGAGCACCAAGACTTTG 59.123 50.000 0.00 0.00 0.00 2.77
311 312 0.179059 TGCGAGCACCAAGACTTTGA 60.179 50.000 0.00 0.00 36.36 2.69
312 313 0.944386 GCGAGCACCAAGACTTTGAA 59.056 50.000 0.00 0.00 36.36 2.69
313 314 1.334149 GCGAGCACCAAGACTTTGAAC 60.334 52.381 0.00 0.00 36.36 3.18
314 315 1.264288 CGAGCACCAAGACTTTGAACC 59.736 52.381 0.00 0.00 36.36 3.62
315 316 1.609072 GAGCACCAAGACTTTGAACCC 59.391 52.381 0.00 0.00 36.36 4.11
316 317 1.215423 AGCACCAAGACTTTGAACCCT 59.785 47.619 0.00 0.00 36.36 4.34
317 318 1.338020 GCACCAAGACTTTGAACCCTG 59.662 52.381 0.00 0.00 36.36 4.45
318 319 2.930950 CACCAAGACTTTGAACCCTGA 58.069 47.619 0.00 0.00 36.36 3.86
319 320 3.490348 CACCAAGACTTTGAACCCTGAT 58.510 45.455 0.00 0.00 36.36 2.90
320 321 3.254166 CACCAAGACTTTGAACCCTGATG 59.746 47.826 0.00 0.00 36.36 3.07
321 322 2.821969 CCAAGACTTTGAACCCTGATGG 59.178 50.000 0.00 0.00 36.36 3.51
322 323 3.498481 CCAAGACTTTGAACCCTGATGGA 60.498 47.826 0.00 0.00 36.36 3.41
323 324 3.425162 AGACTTTGAACCCTGATGGAC 57.575 47.619 0.00 0.00 38.00 4.02
324 325 2.982488 AGACTTTGAACCCTGATGGACT 59.018 45.455 0.00 0.00 38.00 3.85
325 326 3.077359 GACTTTGAACCCTGATGGACTG 58.923 50.000 0.00 0.00 38.00 3.51
326 327 2.711009 ACTTTGAACCCTGATGGACTGA 59.289 45.455 0.00 0.00 38.00 3.41
327 328 3.244700 ACTTTGAACCCTGATGGACTGAG 60.245 47.826 0.00 0.00 38.00 3.35
328 329 1.279496 TGAACCCTGATGGACTGAGG 58.721 55.000 0.00 0.00 38.00 3.86
329 330 1.203300 TGAACCCTGATGGACTGAGGA 60.203 52.381 0.00 0.00 38.00 3.71
330 331 2.122768 GAACCCTGATGGACTGAGGAT 58.877 52.381 0.00 0.00 38.00 3.24
331 332 3.309296 GAACCCTGATGGACTGAGGATA 58.691 50.000 0.00 0.00 38.00 2.59
332 333 2.683768 ACCCTGATGGACTGAGGATAC 58.316 52.381 0.00 0.00 38.00 2.24
333 334 1.974236 CCCTGATGGACTGAGGATACC 59.026 57.143 0.00 0.00 35.39 2.73
334 335 2.682594 CCTGATGGACTGAGGATACCA 58.317 52.381 0.00 0.00 36.83 3.25
335 336 3.246301 CCTGATGGACTGAGGATACCAT 58.754 50.000 0.00 0.00 44.40 3.55
336 337 4.420206 CCTGATGGACTGAGGATACCATA 58.580 47.826 0.00 0.00 42.23 2.74
337 338 4.465660 CCTGATGGACTGAGGATACCATAG 59.534 50.000 0.00 0.00 42.23 2.23
338 339 5.079998 TGATGGACTGAGGATACCATAGT 57.920 43.478 0.00 0.00 42.23 2.12
339 340 5.080337 TGATGGACTGAGGATACCATAGTC 58.920 45.833 0.00 12.59 42.23 2.59
340 341 4.816048 TGGACTGAGGATACCATAGTCT 57.184 45.455 17.20 0.00 38.18 3.24
341 342 4.474394 TGGACTGAGGATACCATAGTCTG 58.526 47.826 17.20 3.64 38.18 3.51
342 343 4.079154 TGGACTGAGGATACCATAGTCTGT 60.079 45.833 17.20 5.99 38.18 3.41
343 344 4.521256 GGACTGAGGATACCATAGTCTGTC 59.479 50.000 17.20 11.94 38.18 3.51
344 345 5.381757 GACTGAGGATACCATAGTCTGTCT 58.618 45.833 13.28 0.00 36.50 3.41
345 346 6.466038 GGACTGAGGATACCATAGTCTGTCTA 60.466 46.154 17.20 0.00 38.18 2.59
346 347 6.912426 ACTGAGGATACCATAGTCTGTCTAA 58.088 40.000 0.00 0.00 31.44 2.10
347 348 6.773685 ACTGAGGATACCATAGTCTGTCTAAC 59.226 42.308 0.00 0.00 31.44 2.34
348 349 6.912426 TGAGGATACCATAGTCTGTCTAACT 58.088 40.000 0.00 0.00 31.44 2.24
349 350 8.042286 TGAGGATACCATAGTCTGTCTAACTA 57.958 38.462 0.00 0.00 32.98 2.24
350 351 8.670490 TGAGGATACCATAGTCTGTCTAACTAT 58.330 37.037 0.00 0.00 39.87 2.12
351 352 9.169592 GAGGATACCATAGTCTGTCTAACTATC 57.830 40.741 0.00 0.00 37.75 2.08
352 353 8.110908 AGGATACCATAGTCTGTCTAACTATCC 58.889 40.741 11.06 11.06 37.75 2.59
353 354 7.889073 GGATACCATAGTCTGTCTAACTATCCA 59.111 40.741 12.63 0.00 37.75 3.41
354 355 9.298250 GATACCATAGTCTGTCTAACTATCCAA 57.702 37.037 0.00 0.00 37.75 3.53
355 356 7.349412 ACCATAGTCTGTCTAACTATCCAAC 57.651 40.000 0.00 0.00 37.75 3.77
356 357 6.324254 ACCATAGTCTGTCTAACTATCCAACC 59.676 42.308 0.00 0.00 37.75 3.77
357 358 6.323996 CCATAGTCTGTCTAACTATCCAACCA 59.676 42.308 0.00 0.00 37.75 3.67
358 359 7.015682 CCATAGTCTGTCTAACTATCCAACCAT 59.984 40.741 0.00 0.00 37.75 3.55
359 360 9.078990 CATAGTCTGTCTAACTATCCAACCATA 57.921 37.037 0.00 0.00 37.75 2.74
360 361 7.589958 AGTCTGTCTAACTATCCAACCATAG 57.410 40.000 0.00 0.00 33.18 2.23
361 362 7.355101 AGTCTGTCTAACTATCCAACCATAGA 58.645 38.462 0.00 0.00 31.62 1.98
362 363 8.007742 AGTCTGTCTAACTATCCAACCATAGAT 58.992 37.037 0.00 0.00 31.62 1.98
363 364 8.643324 GTCTGTCTAACTATCCAACCATAGATT 58.357 37.037 0.00 0.00 31.62 2.40
364 365 8.642432 TCTGTCTAACTATCCAACCATAGATTG 58.358 37.037 0.00 0.00 31.62 2.67
375 376 3.004024 CCATAGATTGGTTTGCGATGC 57.996 47.619 0.00 0.00 40.99 3.91
376 377 2.620115 CCATAGATTGGTTTGCGATGCT 59.380 45.455 0.00 0.00 40.99 3.79
377 378 3.304257 CCATAGATTGGTTTGCGATGCTC 60.304 47.826 0.00 0.00 40.99 4.26
378 379 1.098050 AGATTGGTTTGCGATGCTCC 58.902 50.000 0.00 0.00 0.00 4.70
379 380 0.101219 GATTGGTTTGCGATGCTCCC 59.899 55.000 0.00 0.00 0.00 4.30
399 400 2.150424 CCAACTGGTTCGTGCGTAG 58.850 57.895 0.00 0.00 0.00 3.51
525 1784 1.670811 GTTTGACCACAGTCCACACAG 59.329 52.381 0.00 0.00 42.81 3.66
718 2018 5.643777 CCTCGATCCTTCTTCTTTTGCTTTA 59.356 40.000 0.00 0.00 0.00 1.85
719 2019 6.317391 CCTCGATCCTTCTTCTTTTGCTTTAT 59.683 38.462 0.00 0.00 0.00 1.40
720 2020 7.148171 CCTCGATCCTTCTTCTTTTGCTTTATT 60.148 37.037 0.00 0.00 0.00 1.40
721 2021 8.786826 TCGATCCTTCTTCTTTTGCTTTATTA 57.213 30.769 0.00 0.00 0.00 0.98
754 2059 2.875485 CGCTTCAGCTTGCATGCT 59.125 55.556 20.57 20.57 45.18 3.79
755 2060 1.985447 GCGCTTCAGCTTGCATGCTA 61.985 55.000 24.94 10.88 41.98 3.49
756 2061 0.247974 CGCTTCAGCTTGCATGCTAC 60.248 55.000 24.94 14.26 41.98 3.58
776 2081 7.321153 TGCTACCAAGTCTAAAGTCTAATCAC 58.679 38.462 0.00 0.00 0.00 3.06
933 2251 8.743714 GCTCCTAACTTACTTGTACCTTACTTA 58.256 37.037 0.00 0.00 0.00 2.24
981 2313 6.600822 CAGCAAGAATAATTGAGGAGAAGGAA 59.399 38.462 0.00 0.00 31.55 3.36
1050 2382 0.978146 AGGCCTACGTGCTCAGGAAT 60.978 55.000 1.29 0.00 33.42 3.01
1173 2526 2.772191 ACTGCTGGTGGTGGTGGA 60.772 61.111 0.00 0.00 0.00 4.02
1220 2573 2.005451 CCTCATGAAGAAGAAGGTGCG 58.995 52.381 0.00 0.00 0.00 5.34
1524 2945 3.664537 GCTGTTTGATTCCTCGTTCGTTC 60.665 47.826 0.00 0.00 0.00 3.95
1582 3127 1.237285 AACTGCCCGACTGCATTGAC 61.237 55.000 0.00 0.00 41.16 3.18
1592 3137 3.341823 GACTGCATTGACCTGAGTTCAT 58.658 45.455 0.00 0.00 0.00 2.57
1593 3138 3.341823 ACTGCATTGACCTGAGTTCATC 58.658 45.455 0.00 0.00 0.00 2.92
1594 3139 2.349590 TGCATTGACCTGAGTTCATCG 58.650 47.619 0.00 0.00 0.00 3.84
1595 3140 2.289631 TGCATTGACCTGAGTTCATCGT 60.290 45.455 0.00 0.00 0.00 3.73
1596 3141 2.744202 GCATTGACCTGAGTTCATCGTT 59.256 45.455 0.00 0.00 0.00 3.85
1597 3142 3.189287 GCATTGACCTGAGTTCATCGTTT 59.811 43.478 0.00 0.00 0.00 3.60
1598 3143 4.670221 GCATTGACCTGAGTTCATCGTTTC 60.670 45.833 0.00 0.00 0.00 2.78
1599 3144 3.040147 TGACCTGAGTTCATCGTTTCC 57.960 47.619 0.00 0.00 0.00 3.13
1600 3145 2.632996 TGACCTGAGTTCATCGTTTCCT 59.367 45.455 0.00 0.00 0.00 3.36
1601 3146 3.830178 TGACCTGAGTTCATCGTTTCCTA 59.170 43.478 0.00 0.00 0.00 2.94
1604 3149 3.447586 CCTGAGTTCATCGTTTCCTAGGA 59.552 47.826 7.62 7.62 0.00 2.94
1646 3192 2.483877 CACATTTGTGCACGGATACTGT 59.516 45.455 13.13 6.89 39.39 3.55
1652 3198 2.732500 TGTGCACGGATACTGTAAAACG 59.267 45.455 13.13 0.00 0.00 3.60
1672 3218 8.535690 AAAACGACCACTTTTGTCAAAAATTA 57.464 26.923 11.73 0.00 34.81 1.40
1746 3292 0.803117 TGAGACGCGACTAACTGAGG 59.197 55.000 15.93 0.00 0.00 3.86
1913 3460 0.911769 CCATGGCAACTACTCCCTCA 59.088 55.000 0.00 0.00 37.61 3.86
1923 3470 0.755698 TACTCCCTCAGGCGATGTCC 60.756 60.000 0.00 0.00 0.00 4.02
1929 3476 1.001120 TCAGGCGATGTCCAGGGTA 59.999 57.895 0.00 0.00 0.00 3.69
1939 3486 0.957395 GTCCAGGGTAGTGACGACGA 60.957 60.000 0.00 0.00 0.00 4.20
2110 3889 8.816640 TCCTTCTGCTTTTGTTTTATGATTTC 57.183 30.769 0.00 0.00 0.00 2.17
2154 3933 4.272748 GGTCGATCTAGGGTTTTGTATTGC 59.727 45.833 0.00 0.00 0.00 3.56
2179 3959 6.327626 CCTCTGAATTTAGTCCTGATTAGGGA 59.672 42.308 3.28 0.00 44.70 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.109342 ACCACTGGAAGACAAGCTGG 59.891 55.000 0.71 0.00 37.43 4.85
6 7 2.104792 CAGAAGGACCACTGGAAGACAA 59.895 50.000 0.71 0.00 37.43 3.18
7 8 1.694150 CAGAAGGACCACTGGAAGACA 59.306 52.381 0.71 0.00 37.43 3.41
8 9 2.464157 CAGAAGGACCACTGGAAGAC 57.536 55.000 0.71 0.00 37.43 3.01
14 15 1.376466 CCCACCAGAAGGACCACTG 59.624 63.158 10.52 10.52 38.69 3.66
15 16 1.847968 CCCCACCAGAAGGACCACT 60.848 63.158 0.00 0.00 38.69 4.00
16 17 2.125766 GACCCCACCAGAAGGACCAC 62.126 65.000 0.00 0.00 38.69 4.16
17 18 1.846124 GACCCCACCAGAAGGACCA 60.846 63.158 0.00 0.00 38.69 4.02
18 19 2.955881 CGACCCCACCAGAAGGACC 61.956 68.421 0.00 0.00 38.69 4.46
19 20 2.168666 GACGACCCCACCAGAAGGAC 62.169 65.000 0.00 0.00 38.69 3.85
20 21 1.911766 GACGACCCCACCAGAAGGA 60.912 63.158 0.00 0.00 38.69 3.36
21 22 2.663196 GACGACCCCACCAGAAGG 59.337 66.667 0.00 0.00 42.21 3.46
22 23 2.261671 CGACGACCCCACCAGAAG 59.738 66.667 0.00 0.00 0.00 2.85
23 24 2.522436 ACGACGACCCCACCAGAA 60.522 61.111 0.00 0.00 0.00 3.02
24 25 3.299977 CACGACGACCCCACCAGA 61.300 66.667 0.00 0.00 0.00 3.86
25 26 4.373116 CCACGACGACCCCACCAG 62.373 72.222 0.00 0.00 0.00 4.00
43 44 4.436998 GTCTCCCTGTCACGCCCG 62.437 72.222 0.00 0.00 0.00 6.13
44 45 4.436998 CGTCTCCCTGTCACGCCC 62.437 72.222 0.00 0.00 0.00 6.13
47 48 2.179517 GAGCGTCTCCCTGTCACG 59.820 66.667 0.00 0.00 36.60 4.35
48 49 1.244697 TGAGAGCGTCTCCCTGTCAC 61.245 60.000 11.01 0.00 42.73 3.67
49 50 1.074951 TGAGAGCGTCTCCCTGTCA 59.925 57.895 11.01 0.00 42.73 3.58
50 51 1.509004 GTGAGAGCGTCTCCCTGTC 59.491 63.158 11.01 0.00 42.73 3.51
51 52 1.979693 GGTGAGAGCGTCTCCCTGT 60.980 63.158 11.01 0.00 42.73 4.00
52 53 1.536073 TTGGTGAGAGCGTCTCCCTG 61.536 60.000 11.01 0.00 42.73 4.45
53 54 1.228894 TTGGTGAGAGCGTCTCCCT 60.229 57.895 11.01 0.00 42.73 4.20
54 55 1.079750 GTTGGTGAGAGCGTCTCCC 60.080 63.158 11.01 11.43 42.73 4.30
55 56 0.109039 GAGTTGGTGAGAGCGTCTCC 60.109 60.000 11.01 6.91 42.73 3.71
56 57 0.885196 AGAGTTGGTGAGAGCGTCTC 59.115 55.000 7.74 7.74 43.65 3.36
57 58 1.333177 AAGAGTTGGTGAGAGCGTCT 58.667 50.000 0.00 0.00 0.00 4.18
58 59 2.156343 AAAGAGTTGGTGAGAGCGTC 57.844 50.000 0.00 0.00 0.00 5.19
59 60 2.622064 AAAAGAGTTGGTGAGAGCGT 57.378 45.000 0.00 0.00 0.00 5.07
78 79 6.196724 CGCTTGAATTTGTACCGTGTTAAAAA 59.803 34.615 0.00 0.00 0.00 1.94
79 80 5.681982 CGCTTGAATTTGTACCGTGTTAAAA 59.318 36.000 0.00 0.00 0.00 1.52
80 81 5.206299 CGCTTGAATTTGTACCGTGTTAAA 58.794 37.500 0.00 0.00 0.00 1.52
81 82 4.774586 CGCTTGAATTTGTACCGTGTTAA 58.225 39.130 0.00 0.00 0.00 2.01
82 83 3.364167 GCGCTTGAATTTGTACCGTGTTA 60.364 43.478 0.00 0.00 0.00 2.41
83 84 2.603652 GCGCTTGAATTTGTACCGTGTT 60.604 45.455 0.00 0.00 0.00 3.32
84 85 1.069500 GCGCTTGAATTTGTACCGTGT 60.069 47.619 0.00 0.00 0.00 4.49
85 86 1.196808 AGCGCTTGAATTTGTACCGTG 59.803 47.619 2.64 0.00 0.00 4.94
86 87 1.463444 GAGCGCTTGAATTTGTACCGT 59.537 47.619 13.26 0.00 0.00 4.83
87 88 1.463056 TGAGCGCTTGAATTTGTACCG 59.537 47.619 13.26 0.00 0.00 4.02
88 89 3.764885 ATGAGCGCTTGAATTTGTACC 57.235 42.857 13.26 0.00 0.00 3.34
89 90 6.846283 GTGTATATGAGCGCTTGAATTTGTAC 59.154 38.462 13.26 7.92 0.00 2.90
90 91 6.292114 CGTGTATATGAGCGCTTGAATTTGTA 60.292 38.462 13.26 0.00 0.00 2.41
91 92 5.502382 CGTGTATATGAGCGCTTGAATTTGT 60.502 40.000 13.26 0.00 0.00 2.83
92 93 4.900182 CGTGTATATGAGCGCTTGAATTTG 59.100 41.667 13.26 0.00 0.00 2.32
93 94 4.552767 GCGTGTATATGAGCGCTTGAATTT 60.553 41.667 13.26 4.19 45.48 1.82
94 95 3.059597 GCGTGTATATGAGCGCTTGAATT 60.060 43.478 13.26 0.00 45.48 2.17
95 96 2.476619 GCGTGTATATGAGCGCTTGAAT 59.523 45.455 13.26 8.95 45.48 2.57
96 97 1.858458 GCGTGTATATGAGCGCTTGAA 59.142 47.619 13.26 0.01 45.48 2.69
97 98 1.487482 GCGTGTATATGAGCGCTTGA 58.513 50.000 13.26 0.86 45.48 3.02
98 99 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
99 100 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
100 101 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
103 104 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
104 105 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
105 106 3.636282 AGTGTATGCGCGTGTATATGA 57.364 42.857 13.61 0.00 0.00 2.15
106 107 4.915667 AGTAAGTGTATGCGCGTGTATATG 59.084 41.667 13.61 0.00 0.00 1.78
107 108 5.117355 AGTAAGTGTATGCGCGTGTATAT 57.883 39.130 13.61 0.00 0.00 0.86
108 109 4.556942 AGTAAGTGTATGCGCGTGTATA 57.443 40.909 13.61 2.40 0.00 1.47
109 110 3.431922 AGTAAGTGTATGCGCGTGTAT 57.568 42.857 13.61 4.63 0.00 2.29
110 111 2.925578 AGTAAGTGTATGCGCGTGTA 57.074 45.000 13.61 0.00 0.00 2.90
111 112 1.990563 GAAGTAAGTGTATGCGCGTGT 59.009 47.619 13.61 0.00 0.00 4.49
112 113 2.259618 AGAAGTAAGTGTATGCGCGTG 58.740 47.619 13.61 0.00 0.00 5.34
113 114 2.649331 AGAAGTAAGTGTATGCGCGT 57.351 45.000 8.43 7.55 0.00 6.01
114 115 4.287720 TCATAGAAGTAAGTGTATGCGCG 58.712 43.478 0.00 0.00 0.00 6.86
115 116 5.331607 CGTTCATAGAAGTAAGTGTATGCGC 60.332 44.000 0.00 0.00 0.00 6.09
116 117 5.331607 GCGTTCATAGAAGTAAGTGTATGCG 60.332 44.000 0.00 0.00 0.00 4.73
117 118 5.518847 TGCGTTCATAGAAGTAAGTGTATGC 59.481 40.000 0.00 0.00 0.00 3.14
118 119 6.530181 TGTGCGTTCATAGAAGTAAGTGTATG 59.470 38.462 0.00 0.00 0.00 2.39
119 120 6.530534 GTGTGCGTTCATAGAAGTAAGTGTAT 59.469 38.462 0.00 0.00 0.00 2.29
120 121 5.860182 GTGTGCGTTCATAGAAGTAAGTGTA 59.140 40.000 0.00 0.00 0.00 2.90
121 122 4.684703 GTGTGCGTTCATAGAAGTAAGTGT 59.315 41.667 0.00 0.00 0.00 3.55
122 123 4.091509 GGTGTGCGTTCATAGAAGTAAGTG 59.908 45.833 0.00 0.00 0.00 3.16
123 124 4.243270 GGTGTGCGTTCATAGAAGTAAGT 58.757 43.478 0.00 0.00 0.00 2.24
124 125 3.617263 GGGTGTGCGTTCATAGAAGTAAG 59.383 47.826 0.00 0.00 0.00 2.34
125 126 3.259876 AGGGTGTGCGTTCATAGAAGTAA 59.740 43.478 0.00 0.00 0.00 2.24
126 127 2.829720 AGGGTGTGCGTTCATAGAAGTA 59.170 45.455 0.00 0.00 0.00 2.24
127 128 1.623811 AGGGTGTGCGTTCATAGAAGT 59.376 47.619 0.00 0.00 0.00 3.01
128 129 2.386661 AGGGTGTGCGTTCATAGAAG 57.613 50.000 0.00 0.00 0.00 2.85
129 130 2.093869 GGTAGGGTGTGCGTTCATAGAA 60.094 50.000 0.00 0.00 0.00 2.10
130 131 1.479323 GGTAGGGTGTGCGTTCATAGA 59.521 52.381 0.00 0.00 0.00 1.98
131 132 1.472728 GGGTAGGGTGTGCGTTCATAG 60.473 57.143 0.00 0.00 0.00 2.23
132 133 0.538118 GGGTAGGGTGTGCGTTCATA 59.462 55.000 0.00 0.00 0.00 2.15
133 134 1.298667 GGGTAGGGTGTGCGTTCAT 59.701 57.895 0.00 0.00 0.00 2.57
134 135 2.745037 GGGTAGGGTGTGCGTTCA 59.255 61.111 0.00 0.00 0.00 3.18
135 136 1.259840 TAGGGGTAGGGTGTGCGTTC 61.260 60.000 0.00 0.00 0.00 3.95
136 137 1.229272 TAGGGGTAGGGTGTGCGTT 60.229 57.895 0.00 0.00 0.00 4.84
137 138 1.684734 CTAGGGGTAGGGTGTGCGT 60.685 63.158 0.00 0.00 0.00 5.24
138 139 2.432300 CCTAGGGGTAGGGTGTGCG 61.432 68.421 0.00 0.00 33.60 5.34
139 140 1.002533 TCCTAGGGGTAGGGTGTGC 59.997 63.158 9.46 0.00 37.81 4.57
140 141 1.049289 GCTCCTAGGGGTAGGGTGTG 61.049 65.000 11.24 0.00 37.81 3.82
141 142 1.313822 GCTCCTAGGGGTAGGGTGT 59.686 63.158 11.24 0.00 37.81 4.16
142 143 1.049289 GTGCTCCTAGGGGTAGGGTG 61.049 65.000 11.24 0.00 37.81 4.61
143 144 1.313822 GTGCTCCTAGGGGTAGGGT 59.686 63.158 11.24 0.00 37.81 4.34
144 145 1.459730 GGTGCTCCTAGGGGTAGGG 60.460 68.421 11.24 0.00 37.81 3.53
145 146 0.470268 GAGGTGCTCCTAGGGGTAGG 60.470 65.000 11.24 0.00 45.24 3.18
146 147 0.470268 GGAGGTGCTCCTAGGGGTAG 60.470 65.000 11.24 0.46 46.41 3.18
147 148 1.624753 GGAGGTGCTCCTAGGGGTA 59.375 63.158 11.24 1.77 46.41 3.69
148 149 2.369001 GGAGGTGCTCCTAGGGGT 59.631 66.667 11.24 0.00 46.41 4.95
155 156 0.390472 CAGTCTTTCGGAGGTGCTCC 60.390 60.000 0.00 0.00 46.44 4.70
156 157 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
157 158 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
158 159 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
159 160 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
160 161 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
161 162 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
162 163 0.456995 GTCGGCTCAGTCTTTCGGAG 60.457 60.000 0.00 0.00 40.44 4.63
163 164 1.176619 TGTCGGCTCAGTCTTTCGGA 61.177 55.000 0.00 0.00 0.00 4.55
164 165 0.108615 ATGTCGGCTCAGTCTTTCGG 60.109 55.000 0.00 0.00 0.00 4.30
165 166 2.561733 TATGTCGGCTCAGTCTTTCG 57.438 50.000 0.00 0.00 0.00 3.46
166 167 4.046938 TGATATGTCGGCTCAGTCTTTC 57.953 45.455 0.00 0.00 0.00 2.62
167 168 4.679373 ATGATATGTCGGCTCAGTCTTT 57.321 40.909 0.00 0.00 0.00 2.52
168 169 4.679373 AATGATATGTCGGCTCAGTCTT 57.321 40.909 0.00 0.00 0.00 3.01
169 170 4.679373 AAATGATATGTCGGCTCAGTCT 57.321 40.909 0.00 0.00 0.00 3.24
170 171 6.844696 TTAAAATGATATGTCGGCTCAGTC 57.155 37.500 0.00 0.00 0.00 3.51
171 172 7.624360 TTTTAAAATGATATGTCGGCTCAGT 57.376 32.000 0.00 0.00 0.00 3.41
172 173 8.961092 CAATTTTAAAATGATATGTCGGCTCAG 58.039 33.333 14.04 0.00 0.00 3.35
173 174 8.681806 TCAATTTTAAAATGATATGTCGGCTCA 58.318 29.630 14.04 0.00 0.00 4.26
174 175 8.958043 GTCAATTTTAAAATGATATGTCGGCTC 58.042 33.333 14.04 0.00 0.00 4.70
175 176 7.643764 CGTCAATTTTAAAATGATATGTCGGCT 59.356 33.333 14.04 0.00 0.00 5.52
176 177 7.642194 TCGTCAATTTTAAAATGATATGTCGGC 59.358 33.333 14.04 0.00 0.00 5.54
177 178 9.497030 TTCGTCAATTTTAAAATGATATGTCGG 57.503 29.630 14.04 3.90 0.00 4.79
183 184 9.834628 GGTGACTTCGTCAATTTTAAAATGATA 57.165 29.630 14.04 0.75 44.49 2.15
184 185 7.537306 CGGTGACTTCGTCAATTTTAAAATGAT 59.463 33.333 14.04 0.00 44.49 2.45
185 186 6.853872 CGGTGACTTCGTCAATTTTAAAATGA 59.146 34.615 14.04 10.60 44.49 2.57
186 187 6.635239 ACGGTGACTTCGTCAATTTTAAAATG 59.365 34.615 14.04 8.65 44.49 2.32
187 188 6.731164 ACGGTGACTTCGTCAATTTTAAAAT 58.269 32.000 7.64 7.64 44.49 1.82
188 189 6.121613 ACGGTGACTTCGTCAATTTTAAAA 57.878 33.333 2.51 2.51 44.49 1.52
189 190 5.738118 ACGGTGACTTCGTCAATTTTAAA 57.262 34.783 0.00 0.00 44.49 1.52
190 191 5.406175 CCTACGGTGACTTCGTCAATTTTAA 59.594 40.000 0.00 0.00 44.49 1.52
191 192 4.925054 CCTACGGTGACTTCGTCAATTTTA 59.075 41.667 0.00 0.00 44.49 1.52
192 193 3.744426 CCTACGGTGACTTCGTCAATTTT 59.256 43.478 0.00 0.00 44.49 1.82
193 194 3.323243 CCTACGGTGACTTCGTCAATTT 58.677 45.455 0.00 0.00 44.49 1.82
194 195 2.929592 GCCTACGGTGACTTCGTCAATT 60.930 50.000 0.00 0.00 44.49 2.32
195 196 1.403780 GCCTACGGTGACTTCGTCAAT 60.404 52.381 0.00 0.00 44.49 2.57
196 197 0.038892 GCCTACGGTGACTTCGTCAA 60.039 55.000 0.00 0.00 44.49 3.18
197 198 1.582968 GCCTACGGTGACTTCGTCA 59.417 57.895 0.00 0.00 40.50 4.35
198 199 1.513586 CGCCTACGGTGACTTCGTC 60.514 63.158 0.00 0.00 41.38 4.20
199 200 2.192608 GACGCCTACGGTGACTTCGT 62.193 60.000 0.00 0.00 46.04 3.85
200 201 1.513586 GACGCCTACGGTGACTTCG 60.514 63.158 0.00 0.00 46.04 3.79
201 202 0.179169 GAGACGCCTACGGTGACTTC 60.179 60.000 0.00 0.00 46.04 3.01
202 203 1.881602 GAGACGCCTACGGTGACTT 59.118 57.895 0.00 0.00 46.04 3.01
203 204 2.396955 CGAGACGCCTACGGTGACT 61.397 63.158 0.00 0.00 46.04 3.41
204 205 2.099831 CGAGACGCCTACGGTGAC 59.900 66.667 0.00 0.00 46.04 3.67
205 206 2.359107 ACGAGACGCCTACGGTGA 60.359 61.111 0.00 0.00 46.04 4.02
206 207 2.099831 GACGAGACGCCTACGGTG 59.900 66.667 0.00 0.00 46.04 4.94
207 208 3.494336 CGACGAGACGCCTACGGT 61.494 66.667 0.00 0.00 46.04 4.83
208 209 3.431683 GACGACGAGACGCCTACGG 62.432 68.421 0.00 0.00 46.04 4.02
209 210 3.747514 CGACGACGAGACGCCTACG 62.748 68.421 0.00 0.00 43.40 3.51
210 211 2.021106 CGACGACGAGACGCCTAC 59.979 66.667 0.00 0.00 42.66 3.18
211 212 2.125952 TCGACGACGAGACGCCTA 60.126 61.111 5.75 0.00 43.81 3.93
229 230 1.080025 GTGGGAGGAGACGTTTCCG 60.080 63.158 18.59 0.00 42.29 4.30
230 231 0.037232 CAGTGGGAGGAGACGTTTCC 60.037 60.000 17.16 17.16 37.52 3.13
231 232 0.966920 TCAGTGGGAGGAGACGTTTC 59.033 55.000 0.00 0.00 0.00 2.78
232 233 1.420430 TTCAGTGGGAGGAGACGTTT 58.580 50.000 0.00 0.00 0.00 3.60
233 234 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
234 235 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
235 236 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
236 237 0.460987 CGCATTCAGTGGGAGGAGAC 60.461 60.000 0.00 0.00 43.02 3.36
237 238 0.904865 ACGCATTCAGTGGGAGGAGA 60.905 55.000 0.00 0.00 43.02 3.71
238 239 0.460987 GACGCATTCAGTGGGAGGAG 60.461 60.000 0.00 0.00 43.02 3.69
239 240 0.904865 AGACGCATTCAGTGGGAGGA 60.905 55.000 0.00 0.00 43.02 3.71
240 241 0.460987 GAGACGCATTCAGTGGGAGG 60.461 60.000 0.00 0.00 43.02 4.30
241 242 0.803768 CGAGACGCATTCAGTGGGAG 60.804 60.000 0.00 0.00 43.02 4.30
242 243 1.215382 CGAGACGCATTCAGTGGGA 59.785 57.895 0.00 0.00 43.02 4.37
243 244 1.078759 GACGAGACGCATTCAGTGGG 61.079 60.000 0.00 0.00 45.61 4.61
244 245 1.406219 CGACGAGACGCATTCAGTGG 61.406 60.000 0.00 0.00 0.00 4.00
245 246 0.454452 TCGACGAGACGCATTCAGTG 60.454 55.000 0.00 0.00 0.00 3.66
246 247 0.240145 TTCGACGAGACGCATTCAGT 59.760 50.000 0.00 0.00 0.00 3.41
247 248 1.336877 TTTCGACGAGACGCATTCAG 58.663 50.000 0.00 0.00 0.00 3.02
248 249 1.773410 TTTTCGACGAGACGCATTCA 58.227 45.000 0.00 0.00 0.00 2.57
249 250 3.060895 AGAATTTTCGACGAGACGCATTC 59.939 43.478 0.00 0.74 0.00 2.67
250 251 2.993899 AGAATTTTCGACGAGACGCATT 59.006 40.909 0.00 0.00 0.00 3.56
251 252 2.345641 CAGAATTTTCGACGAGACGCAT 59.654 45.455 0.00 0.00 0.00 4.73
252 253 1.719246 CAGAATTTTCGACGAGACGCA 59.281 47.619 0.00 0.00 0.00 5.24
253 254 1.983605 TCAGAATTTTCGACGAGACGC 59.016 47.619 0.00 0.00 0.00 5.19
254 255 4.624721 TTTCAGAATTTTCGACGAGACG 57.375 40.909 0.00 0.00 0.00 4.18
255 256 9.200303 GATTTATTTCAGAATTTTCGACGAGAC 57.800 33.333 0.00 0.00 0.00 3.36
256 257 8.388103 GGATTTATTTCAGAATTTTCGACGAGA 58.612 33.333 0.00 0.00 0.00 4.04
257 258 8.175069 TGGATTTATTTCAGAATTTTCGACGAG 58.825 33.333 0.00 0.00 0.00 4.18
258 259 8.035165 TGGATTTATTTCAGAATTTTCGACGA 57.965 30.769 0.00 0.00 0.00 4.20
259 260 8.175069 TCTGGATTTATTTCAGAATTTTCGACG 58.825 33.333 0.00 0.00 34.97 5.12
260 261 9.840427 TTCTGGATTTATTTCAGAATTTTCGAC 57.160 29.630 0.00 0.00 41.04 4.20
269 270 9.734620 CGCATTTATTTCTGGATTTATTTCAGA 57.265 29.630 0.00 0.00 35.95 3.27
270 271 9.734620 TCGCATTTATTTCTGGATTTATTTCAG 57.265 29.630 0.00 0.00 0.00 3.02
271 272 9.734620 CTCGCATTTATTTCTGGATTTATTTCA 57.265 29.630 0.00 0.00 0.00 2.69
272 273 8.694394 GCTCGCATTTATTTCTGGATTTATTTC 58.306 33.333 0.00 0.00 0.00 2.17
273 274 8.196771 TGCTCGCATTTATTTCTGGATTTATTT 58.803 29.630 0.00 0.00 0.00 1.40
274 275 7.649306 GTGCTCGCATTTATTTCTGGATTTATT 59.351 33.333 0.00 0.00 0.00 1.40
275 276 7.141363 GTGCTCGCATTTATTTCTGGATTTAT 58.859 34.615 0.00 0.00 0.00 1.40
276 277 6.459573 GGTGCTCGCATTTATTTCTGGATTTA 60.460 38.462 0.00 0.00 0.00 1.40
277 278 5.343249 GTGCTCGCATTTATTTCTGGATTT 58.657 37.500 0.00 0.00 0.00 2.17
278 279 4.202050 GGTGCTCGCATTTATTTCTGGATT 60.202 41.667 0.00 0.00 0.00 3.01
279 280 3.316308 GGTGCTCGCATTTATTTCTGGAT 59.684 43.478 0.00 0.00 0.00 3.41
280 281 2.682856 GGTGCTCGCATTTATTTCTGGA 59.317 45.455 0.00 0.00 0.00 3.86
281 282 2.423185 TGGTGCTCGCATTTATTTCTGG 59.577 45.455 0.00 0.00 0.00 3.86
282 283 3.763097 TGGTGCTCGCATTTATTTCTG 57.237 42.857 0.00 0.00 0.00 3.02
283 284 4.009675 TCTTGGTGCTCGCATTTATTTCT 58.990 39.130 0.00 0.00 0.00 2.52
284 285 4.098416 GTCTTGGTGCTCGCATTTATTTC 58.902 43.478 0.00 0.00 0.00 2.17
285 286 3.758554 AGTCTTGGTGCTCGCATTTATTT 59.241 39.130 0.00 0.00 0.00 1.40
286 287 3.347216 AGTCTTGGTGCTCGCATTTATT 58.653 40.909 0.00 0.00 0.00 1.40
287 288 2.991250 AGTCTTGGTGCTCGCATTTAT 58.009 42.857 0.00 0.00 0.00 1.40
288 289 2.472695 AGTCTTGGTGCTCGCATTTA 57.527 45.000 0.00 0.00 0.00 1.40
289 290 1.609208 AAGTCTTGGTGCTCGCATTT 58.391 45.000 0.00 0.00 0.00 2.32
290 291 1.267806 CAAAGTCTTGGTGCTCGCATT 59.732 47.619 0.00 0.00 0.00 3.56
291 292 0.877071 CAAAGTCTTGGTGCTCGCAT 59.123 50.000 0.00 0.00 0.00 4.73
292 293 0.179059 TCAAAGTCTTGGTGCTCGCA 60.179 50.000 0.00 0.00 33.01 5.10
293 294 0.944386 TTCAAAGTCTTGGTGCTCGC 59.056 50.000 0.00 0.00 33.01 5.03
294 295 1.264288 GGTTCAAAGTCTTGGTGCTCG 59.736 52.381 0.00 0.00 33.01 5.03
295 296 1.609072 GGGTTCAAAGTCTTGGTGCTC 59.391 52.381 0.00 0.00 33.01 4.26
296 297 1.215423 AGGGTTCAAAGTCTTGGTGCT 59.785 47.619 0.00 0.00 33.01 4.40
297 298 1.338020 CAGGGTTCAAAGTCTTGGTGC 59.662 52.381 0.00 0.00 33.01 5.01
298 299 2.930950 TCAGGGTTCAAAGTCTTGGTG 58.069 47.619 0.00 0.00 33.01 4.17
299 300 3.490348 CATCAGGGTTCAAAGTCTTGGT 58.510 45.455 0.00 0.00 33.01 3.67
300 301 2.821969 CCATCAGGGTTCAAAGTCTTGG 59.178 50.000 0.00 0.00 33.01 3.61
301 302 3.503748 GTCCATCAGGGTTCAAAGTCTTG 59.496 47.826 0.00 0.00 38.11 3.02
302 303 3.395941 AGTCCATCAGGGTTCAAAGTCTT 59.604 43.478 0.00 0.00 38.11 3.01
303 304 2.982488 AGTCCATCAGGGTTCAAAGTCT 59.018 45.455 0.00 0.00 38.11 3.24
304 305 3.077359 CAGTCCATCAGGGTTCAAAGTC 58.923 50.000 0.00 0.00 38.11 3.01
305 306 2.711009 TCAGTCCATCAGGGTTCAAAGT 59.289 45.455 0.00 0.00 38.11 2.66
306 307 3.341823 CTCAGTCCATCAGGGTTCAAAG 58.658 50.000 0.00 0.00 38.11 2.77
307 308 2.040278 CCTCAGTCCATCAGGGTTCAAA 59.960 50.000 0.00 0.00 38.11 2.69
308 309 1.630369 CCTCAGTCCATCAGGGTTCAA 59.370 52.381 0.00 0.00 38.11 2.69
309 310 1.203300 TCCTCAGTCCATCAGGGTTCA 60.203 52.381 0.00 0.00 38.11 3.18
310 311 1.573108 TCCTCAGTCCATCAGGGTTC 58.427 55.000 0.00 0.00 38.11 3.62
311 312 2.277008 ATCCTCAGTCCATCAGGGTT 57.723 50.000 0.00 0.00 38.11 4.11
312 313 2.683768 GTATCCTCAGTCCATCAGGGT 58.316 52.381 0.00 0.00 38.11 4.34
313 314 1.974236 GGTATCCTCAGTCCATCAGGG 59.026 57.143 0.00 0.00 34.83 4.45
314 315 2.682594 TGGTATCCTCAGTCCATCAGG 58.317 52.381 0.00 0.00 0.00 3.86
315 316 5.083122 ACTATGGTATCCTCAGTCCATCAG 58.917 45.833 0.00 0.00 40.54 2.90
316 317 5.079998 ACTATGGTATCCTCAGTCCATCA 57.920 43.478 0.00 0.00 40.54 3.07
317 318 5.184864 CAGACTATGGTATCCTCAGTCCATC 59.815 48.000 12.89 0.00 40.54 3.51
318 319 5.083122 CAGACTATGGTATCCTCAGTCCAT 58.917 45.833 12.89 0.00 42.38 3.41
319 320 4.079154 ACAGACTATGGTATCCTCAGTCCA 60.079 45.833 12.89 0.00 36.44 4.02
320 321 4.475345 ACAGACTATGGTATCCTCAGTCC 58.525 47.826 12.89 0.00 36.44 3.85
321 322 5.381757 AGACAGACTATGGTATCCTCAGTC 58.618 45.833 10.25 10.25 36.22 3.51
322 323 5.396057 AGACAGACTATGGTATCCTCAGT 57.604 43.478 0.00 0.00 0.00 3.41
323 324 7.001674 AGTTAGACAGACTATGGTATCCTCAG 58.998 42.308 0.00 0.00 0.00 3.35
324 325 6.912426 AGTTAGACAGACTATGGTATCCTCA 58.088 40.000 0.00 0.00 0.00 3.86
325 326 9.169592 GATAGTTAGACAGACTATGGTATCCTC 57.830 40.741 1.82 0.00 39.70 3.71
326 327 8.110908 GGATAGTTAGACAGACTATGGTATCCT 58.889 40.741 1.82 0.00 39.70 3.24
327 328 7.889073 TGGATAGTTAGACAGACTATGGTATCC 59.111 40.741 1.82 11.70 39.70 2.59
328 329 8.865420 TGGATAGTTAGACAGACTATGGTATC 57.135 38.462 1.82 0.00 39.70 2.24
329 330 9.080097 GTTGGATAGTTAGACAGACTATGGTAT 57.920 37.037 1.82 0.00 39.70 2.73
330 331 7.504911 GGTTGGATAGTTAGACAGACTATGGTA 59.495 40.741 1.82 0.00 39.70 3.25
331 332 6.324254 GGTTGGATAGTTAGACAGACTATGGT 59.676 42.308 1.82 0.00 39.70 3.55
332 333 6.323996 TGGTTGGATAGTTAGACAGACTATGG 59.676 42.308 1.82 0.00 39.70 2.74
333 334 7.348080 TGGTTGGATAGTTAGACAGACTATG 57.652 40.000 1.82 0.00 39.70 2.23
334 335 9.303116 CTATGGTTGGATAGTTAGACAGACTAT 57.697 37.037 0.00 0.00 41.68 2.12
335 336 8.500238 TCTATGGTTGGATAGTTAGACAGACTA 58.500 37.037 0.00 0.00 34.38 2.59
336 337 7.355101 TCTATGGTTGGATAGTTAGACAGACT 58.645 38.462 0.00 0.00 0.00 3.24
337 338 7.584122 TCTATGGTTGGATAGTTAGACAGAC 57.416 40.000 0.00 0.00 0.00 3.51
338 339 8.642432 CAATCTATGGTTGGATAGTTAGACAGA 58.358 37.037 0.00 0.00 0.00 3.41
339 340 8.824159 CAATCTATGGTTGGATAGTTAGACAG 57.176 38.462 0.00 0.00 0.00 3.51
355 356 6.330791 GGAGCATCGCAAACCAATCTATGG 62.331 50.000 0.00 0.00 46.94 2.74
356 357 3.304257 GGAGCATCGCAAACCAATCTATG 60.304 47.826 0.00 0.00 34.37 2.23
357 358 2.880890 GGAGCATCGCAAACCAATCTAT 59.119 45.455 0.00 0.00 34.37 1.98
358 359 2.288666 GGAGCATCGCAAACCAATCTA 58.711 47.619 0.00 0.00 34.37 1.98
359 360 1.098050 GGAGCATCGCAAACCAATCT 58.902 50.000 0.00 0.00 34.37 2.40
360 361 3.629858 GGAGCATCGCAAACCAATC 57.370 52.632 0.00 0.00 34.37 2.67
370 371 1.746615 CCAGTTGGTGGGAGCATCG 60.747 63.158 0.00 0.00 43.63 3.84
371 372 4.326255 CCAGTTGGTGGGAGCATC 57.674 61.111 0.00 0.00 43.63 3.91
399 400 3.451141 TGGTTTTCAACTTCACATGGC 57.549 42.857 0.00 0.00 0.00 4.40
525 1784 4.615815 AGGGCTCGCATCGCATCC 62.616 66.667 0.00 0.00 0.00 3.51
564 1823 1.375551 GGTACGTATTTGGCCCACTG 58.624 55.000 0.00 0.00 0.00 3.66
718 2018 9.180678 CTGAAGCGCGGAAAAATTATTAATAAT 57.819 29.630 13.85 13.85 34.59 1.28
719 2019 7.166804 GCTGAAGCGCGGAAAAATTATTAATAA 59.833 33.333 8.83 10.27 0.00 1.40
720 2020 6.635239 GCTGAAGCGCGGAAAAATTATTAATA 59.365 34.615 8.83 0.00 0.00 0.98
721 2021 5.458779 GCTGAAGCGCGGAAAAATTATTAAT 59.541 36.000 8.83 0.00 0.00 1.40
754 2059 6.155737 GGGGTGATTAGACTTTAGACTTGGTA 59.844 42.308 0.00 0.00 0.00 3.25
755 2060 5.045797 GGGGTGATTAGACTTTAGACTTGGT 60.046 44.000 0.00 0.00 0.00 3.67
756 2061 5.189934 AGGGGTGATTAGACTTTAGACTTGG 59.810 44.000 0.00 0.00 0.00 3.61
933 2251 1.463674 CCGTTGCTTCCTTGCCTAAT 58.536 50.000 0.00 0.00 0.00 1.73
934 2252 1.241315 GCCGTTGCTTCCTTGCCTAA 61.241 55.000 0.00 0.00 33.53 2.69
935 2253 1.674322 GCCGTTGCTTCCTTGCCTA 60.674 57.895 0.00 0.00 33.53 3.93
981 2313 1.885049 TGGCTTATCAGCTCCTCCTT 58.115 50.000 0.00 0.00 46.44 3.36
1050 2382 1.552337 CTGAGCTTCTCCTTGTAGGCA 59.448 52.381 0.00 0.00 34.61 4.75
1315 2716 5.950758 AAGAACAAACTTACACACACACA 57.049 34.783 0.00 0.00 0.00 3.72
1316 2717 5.506832 CGAAAGAACAAACTTACACACACAC 59.493 40.000 0.00 0.00 0.00 3.82
1409 2815 6.002082 AGGATTACTCTTGGCGTAACTTTTT 58.998 36.000 0.00 0.00 30.44 1.94
1492 2899 3.319122 GGAATCAAACAGCCAAGACAAGT 59.681 43.478 0.00 0.00 0.00 3.16
1524 2945 2.083774 TGAACAGAAATGCTTAGCCCG 58.916 47.619 0.29 0.00 0.00 6.13
1582 3127 3.447586 TCCTAGGAAACGATGAACTCAGG 59.552 47.826 9.71 0.00 0.00 3.86
1592 3137 5.642063 CAGCAATTTACTTCCTAGGAAACGA 59.358 40.000 24.31 10.20 37.03 3.85
1593 3138 5.642063 TCAGCAATTTACTTCCTAGGAAACG 59.358 40.000 24.31 16.18 37.03 3.60
1594 3139 7.448748 TTCAGCAATTTACTTCCTAGGAAAC 57.551 36.000 24.31 7.34 37.03 2.78
1595 3140 7.309194 GCTTTCAGCAATTTACTTCCTAGGAAA 60.309 37.037 24.31 10.72 41.89 3.13
1596 3141 6.151144 GCTTTCAGCAATTTACTTCCTAGGAA 59.849 38.462 22.94 22.94 41.89 3.36
1597 3142 5.648092 GCTTTCAGCAATTTACTTCCTAGGA 59.352 40.000 7.62 7.62 41.89 2.94
1598 3143 5.163612 GGCTTTCAGCAATTTACTTCCTAGG 60.164 44.000 0.82 0.82 44.75 3.02
1599 3144 5.415701 TGGCTTTCAGCAATTTACTTCCTAG 59.584 40.000 0.00 0.00 44.75 3.02
1600 3145 5.183140 GTGGCTTTCAGCAATTTACTTCCTA 59.817 40.000 0.00 0.00 44.75 2.94
1601 3146 4.021981 GTGGCTTTCAGCAATTTACTTCCT 60.022 41.667 0.00 0.00 44.75 3.36
1604 3149 4.257267 GGTGGCTTTCAGCAATTTACTT 57.743 40.909 0.00 0.00 44.75 2.24
1646 3192 8.535690 AATTTTTGACAAAAGTGGTCGTTTTA 57.464 26.923 12.84 0.00 38.10 1.52
1731 3277 1.402259 CAGATCCTCAGTTAGTCGCGT 59.598 52.381 5.77 0.00 0.00 6.01
1746 3292 1.048601 TGGGCCCGATAAGTCAGATC 58.951 55.000 19.37 0.00 0.00 2.75
1913 3460 1.001760 ACTACCCTGGACATCGCCT 59.998 57.895 0.00 0.00 0.00 5.52
1923 3470 1.134075 CGTCGTCGTCACTACCCTG 59.866 63.158 0.00 0.00 0.00 4.45
1929 3476 3.735029 GGAGCCGTCGTCGTCACT 61.735 66.667 0.71 0.00 35.01 3.41
2040 3819 4.580551 CGCCGGCGTTAGTAGGGG 62.581 72.222 39.71 8.63 34.35 4.79
2110 3889 6.373186 ACCTAAACCTCAAGAACGAAAAAG 57.627 37.500 0.00 0.00 0.00 2.27
2154 3933 6.327626 TCCCTAATCAGGACTAAATTCAGAGG 59.672 42.308 0.00 0.00 45.91 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.