Multiple sequence alignment - TraesCS6D01G060900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G060900 chr6D 100.000 2270 0 0 1 2270 28627512 28629781 0.000000e+00 4193.0
1 TraesCS6D01G060900 chr6D 79.769 1038 99 45 645 1631 28634242 28635219 0.000000e+00 651.0
2 TraesCS6D01G060900 chr6A 86.887 1121 74 31 469 1577 34071777 34070718 0.000000e+00 1188.0
3 TraesCS6D01G060900 chr6A 78.633 1039 112 47 675 1674 34039929 34038962 2.510000e-164 588.0
4 TraesCS6D01G060900 chr6A 79.258 728 64 35 1579 2270 34069551 34068875 5.790000e-116 427.0
5 TraesCS6D01G060900 chr6B 85.291 1081 100 28 942 1996 62213445 62212398 0.000000e+00 1061.0
6 TraesCS6D01G060900 chr6B 89.660 648 46 6 998 1634 62154929 62154292 0.000000e+00 806.0
7 TraesCS6D01G060900 chr6B 88.016 509 48 8 1001 1504 62179042 62178542 6.980000e-165 590.0
8 TraesCS6D01G060900 chr6B 81.635 746 71 30 608 1318 62146811 62146097 1.970000e-155 558.0
9 TraesCS6D01G060900 chr6B 86.395 441 26 14 461 896 62213848 62213437 3.440000e-123 451.0
10 TraesCS6D01G060900 chr6B 86.311 431 29 12 473 896 62179484 62179077 2.070000e-120 442.0
11 TraesCS6D01G060900 chr6B 89.441 161 15 1 1576 1734 62178387 62178227 3.820000e-48 202.0
12 TraesCS6D01G060900 chr6B 88.667 150 12 3 1848 1997 62177954 62177810 6.440000e-41 178.0
13 TraesCS6D01G060900 chr6B 79.638 221 16 17 2017 2229 62177086 62176887 5.090000e-27 132.0
14 TraesCS6D01G060900 chr6B 91.579 95 7 1 2177 2270 62153357 62153263 1.830000e-26 130.0
15 TraesCS6D01G060900 chr6B 88.073 109 11 2 672 778 62155731 62155623 6.580000e-26 128.0
16 TraesCS6D01G060900 chr6B 93.846 65 4 0 1329 1393 62146105 62146041 5.160000e-17 99.0
17 TraesCS6D01G060900 chr4D 89.575 259 26 1 113 371 41930278 41930535 6.050000e-86 327.0
18 TraesCS6D01G060900 chr1D 90.164 244 24 0 120 363 446802995 446802752 3.640000e-83 318.0
19 TraesCS6D01G060900 chr1D 90.083 242 24 0 120 361 301710571 301710812 4.710000e-82 315.0
20 TraesCS6D01G060900 chr7D 89.558 249 26 0 113 361 561578879 561578631 1.310000e-82 316.0
21 TraesCS6D01G060900 chr7D 89.754 244 25 0 118 361 80353456 80353213 1.690000e-81 313.0
22 TraesCS6D01G060900 chr2D 89.796 245 25 0 120 364 478093761 478093517 4.710000e-82 315.0
23 TraesCS6D01G060900 chr7B 89.754 244 25 0 120 363 431196820 431196577 1.690000e-81 313.0
24 TraesCS6D01G060900 chr3B 88.976 254 22 3 113 363 825867882 825868132 2.190000e-80 309.0
25 TraesCS6D01G060900 chr1B 88.845 251 28 0 113 363 286692322 286692572 2.190000e-80 309.0
26 TraesCS6D01G060900 chr1A 83.544 79 8 2 70 143 153594063 153594141 4.050000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G060900 chr6D 28627512 28629781 2269 False 4193.000000 4193 100.000000 1 2270 1 chr6D.!!$F1 2269
1 TraesCS6D01G060900 chr6D 28634242 28635219 977 False 651.000000 651 79.769000 645 1631 1 chr6D.!!$F2 986
2 TraesCS6D01G060900 chr6A 34068875 34071777 2902 True 807.500000 1188 83.072500 469 2270 2 chr6A.!!$R2 1801
3 TraesCS6D01G060900 chr6A 34038962 34039929 967 True 588.000000 588 78.633000 675 1674 1 chr6A.!!$R1 999
4 TraesCS6D01G060900 chr6B 62212398 62213848 1450 True 756.000000 1061 85.843000 461 1996 2 chr6B.!!$R4 1535
5 TraesCS6D01G060900 chr6B 62153263 62155731 2468 True 354.666667 806 89.770667 672 2270 3 chr6B.!!$R2 1598
6 TraesCS6D01G060900 chr6B 62146041 62146811 770 True 328.500000 558 87.740500 608 1393 2 chr6B.!!$R1 785
7 TraesCS6D01G060900 chr6B 62176887 62179484 2597 True 308.800000 590 86.414600 473 2229 5 chr6B.!!$R3 1756

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.036306 GTGATTTCGGTGGGGTGAGT 59.964 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 5370 0.251916 TTCATAGACACCCCGCCTTG 59.748 55.0 0.0 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.695217 CGTATTAACAGGCAACAACCAT 57.305 40.909 0.00 0.00 41.41 3.55
22 23 5.054390 CGTATTAACAGGCAACAACCATT 57.946 39.130 0.00 0.00 41.41 3.16
23 24 5.465935 CGTATTAACAGGCAACAACCATTT 58.534 37.500 0.00 0.00 41.41 2.32
24 25 5.571357 CGTATTAACAGGCAACAACCATTTC 59.429 40.000 0.00 0.00 41.41 2.17
25 26 2.908688 AACAGGCAACAACCATTTCC 57.091 45.000 0.00 0.00 41.41 3.13
26 27 2.086610 ACAGGCAACAACCATTTCCT 57.913 45.000 0.00 0.00 41.41 3.36
27 28 1.963515 ACAGGCAACAACCATTTCCTC 59.036 47.619 0.00 0.00 41.41 3.71
28 29 1.273327 CAGGCAACAACCATTTCCTCC 59.727 52.381 0.00 0.00 41.41 4.30
29 30 1.133199 AGGCAACAACCATTTCCTCCA 60.133 47.619 0.00 0.00 41.41 3.86
30 31 1.691434 GGCAACAACCATTTCCTCCAA 59.309 47.619 0.00 0.00 0.00 3.53
31 32 2.103941 GGCAACAACCATTTCCTCCAAA 59.896 45.455 0.00 0.00 0.00 3.28
32 33 3.392882 GCAACAACCATTTCCTCCAAAG 58.607 45.455 0.00 0.00 0.00 2.77
33 34 3.181466 GCAACAACCATTTCCTCCAAAGT 60.181 43.478 0.00 0.00 0.00 2.66
34 35 4.683129 GCAACAACCATTTCCTCCAAAGTT 60.683 41.667 0.00 0.00 0.00 2.66
35 36 4.670896 ACAACCATTTCCTCCAAAGTTG 57.329 40.909 0.00 0.00 36.71 3.16
36 37 4.285863 ACAACCATTTCCTCCAAAGTTGA 58.714 39.130 6.95 0.00 35.31 3.18
37 38 4.714308 ACAACCATTTCCTCCAAAGTTGAA 59.286 37.500 6.95 0.00 35.31 2.69
38 39 4.937201 ACCATTTCCTCCAAAGTTGAAC 57.063 40.909 0.00 0.00 0.00 3.18
39 40 3.317993 ACCATTTCCTCCAAAGTTGAACG 59.682 43.478 0.00 0.00 0.00 3.95
40 41 3.305335 CCATTTCCTCCAAAGTTGAACGG 60.305 47.826 0.00 0.00 0.00 4.44
41 42 3.284793 TTTCCTCCAAAGTTGAACGGA 57.715 42.857 0.00 0.00 0.00 4.69
42 43 3.502123 TTCCTCCAAAGTTGAACGGAT 57.498 42.857 0.00 0.00 0.00 4.18
43 44 3.053831 TCCTCCAAAGTTGAACGGATC 57.946 47.619 0.00 0.00 0.00 3.36
44 45 2.084546 CCTCCAAAGTTGAACGGATCC 58.915 52.381 0.00 0.00 0.00 3.36
45 46 2.084546 CTCCAAAGTTGAACGGATCCC 58.915 52.381 6.06 0.00 0.00 3.85
46 47 1.702957 TCCAAAGTTGAACGGATCCCT 59.297 47.619 6.06 0.00 0.00 4.20
47 48 2.907696 TCCAAAGTTGAACGGATCCCTA 59.092 45.455 6.06 0.00 0.00 3.53
48 49 3.055385 TCCAAAGTTGAACGGATCCCTAG 60.055 47.826 6.06 0.00 0.00 3.02
49 50 3.055385 CCAAAGTTGAACGGATCCCTAGA 60.055 47.826 6.06 0.00 0.00 2.43
50 51 4.184629 CAAAGTTGAACGGATCCCTAGAG 58.815 47.826 6.06 0.00 0.00 2.43
51 52 3.383698 AGTTGAACGGATCCCTAGAGA 57.616 47.619 6.06 0.00 0.00 3.10
52 53 3.025262 AGTTGAACGGATCCCTAGAGAC 58.975 50.000 6.06 0.00 0.00 3.36
53 54 2.068834 TGAACGGATCCCTAGAGACC 57.931 55.000 6.06 0.00 0.00 3.85
54 55 0.953003 GAACGGATCCCTAGAGACCG 59.047 60.000 6.06 11.70 45.38 4.79
55 56 0.467659 AACGGATCCCTAGAGACCGG 60.468 60.000 6.06 0.00 44.70 5.28
56 57 1.351080 ACGGATCCCTAGAGACCGGA 61.351 60.000 9.46 4.19 44.70 5.14
57 58 0.606944 CGGATCCCTAGAGACCGGAG 60.607 65.000 9.46 0.00 40.15 4.63
71 72 3.148279 GGAGGGAGCGGACGTGAT 61.148 66.667 0.00 0.00 0.00 3.06
72 73 2.722201 GGAGGGAGCGGACGTGATT 61.722 63.158 0.00 0.00 0.00 2.57
73 74 1.218316 GAGGGAGCGGACGTGATTT 59.782 57.895 0.00 0.00 0.00 2.17
74 75 0.806492 GAGGGAGCGGACGTGATTTC 60.806 60.000 0.00 0.00 0.00 2.17
75 76 2.165301 GGGAGCGGACGTGATTTCG 61.165 63.158 0.00 0.00 0.00 3.46
76 77 2.165301 GGAGCGGACGTGATTTCGG 61.165 63.158 0.00 0.00 34.94 4.30
77 78 1.445582 GAGCGGACGTGATTTCGGT 60.446 57.895 0.00 0.00 36.03 4.69
78 79 1.683790 GAGCGGACGTGATTTCGGTG 61.684 60.000 0.00 0.00 33.43 4.94
79 80 2.736682 GCGGACGTGATTTCGGTGG 61.737 63.158 0.00 0.00 34.94 4.61
80 81 2.098233 CGGACGTGATTTCGGTGGG 61.098 63.158 0.00 0.00 34.94 4.61
81 82 1.743995 GGACGTGATTTCGGTGGGG 60.744 63.158 0.00 0.00 34.94 4.96
82 83 1.004200 GACGTGATTTCGGTGGGGT 60.004 57.895 0.00 0.00 34.94 4.95
83 84 1.296056 GACGTGATTTCGGTGGGGTG 61.296 60.000 0.00 0.00 34.94 4.61
84 85 1.004320 CGTGATTTCGGTGGGGTGA 60.004 57.895 0.00 0.00 0.00 4.02
85 86 1.019278 CGTGATTTCGGTGGGGTGAG 61.019 60.000 0.00 0.00 0.00 3.51
86 87 0.036306 GTGATTTCGGTGGGGTGAGT 59.964 55.000 0.00 0.00 0.00 3.41
87 88 0.323629 TGATTTCGGTGGGGTGAGTC 59.676 55.000 0.00 0.00 0.00 3.36
88 89 0.739813 GATTTCGGTGGGGTGAGTCG 60.740 60.000 0.00 0.00 0.00 4.18
89 90 2.798148 ATTTCGGTGGGGTGAGTCGC 62.798 60.000 0.00 0.00 0.00 5.19
90 91 4.988716 TCGGTGGGGTGAGTCGCT 62.989 66.667 3.25 0.00 0.00 4.93
91 92 4.742201 CGGTGGGGTGAGTCGCTG 62.742 72.222 3.25 0.00 0.00 5.18
92 93 3.311110 GGTGGGGTGAGTCGCTGA 61.311 66.667 3.25 0.00 0.00 4.26
93 94 2.262915 GTGGGGTGAGTCGCTGAG 59.737 66.667 3.25 0.00 0.00 3.35
94 95 2.203640 TGGGGTGAGTCGCTGAGT 60.204 61.111 3.25 0.00 0.00 3.41
95 96 2.262915 GGGGTGAGTCGCTGAGTG 59.737 66.667 3.25 0.00 0.00 3.51
96 97 2.433318 GGGTGAGTCGCTGAGTGC 60.433 66.667 3.25 0.00 38.57 4.40
97 98 2.653702 GGTGAGTCGCTGAGTGCT 59.346 61.111 3.25 0.00 40.11 4.40
98 99 1.445238 GGTGAGTCGCTGAGTGCTC 60.445 63.158 3.25 9.48 40.11 4.26
99 100 1.445238 GTGAGTCGCTGAGTGCTCC 60.445 63.158 12.51 3.88 40.11 4.70
100 101 1.604879 TGAGTCGCTGAGTGCTCCT 60.605 57.895 12.51 0.00 40.11 3.69
101 102 0.322546 TGAGTCGCTGAGTGCTCCTA 60.323 55.000 12.51 0.00 40.11 2.94
102 103 0.811915 GAGTCGCTGAGTGCTCCTAA 59.188 55.000 6.28 0.00 40.11 2.69
103 104 1.407258 GAGTCGCTGAGTGCTCCTAAT 59.593 52.381 6.28 0.00 40.11 1.73
104 105 1.407258 AGTCGCTGAGTGCTCCTAATC 59.593 52.381 0.00 0.00 40.11 1.75
105 106 0.747255 TCGCTGAGTGCTCCTAATCC 59.253 55.000 0.00 0.00 40.11 3.01
106 107 0.596083 CGCTGAGTGCTCCTAATCCG 60.596 60.000 0.00 0.00 40.11 4.18
107 108 0.878086 GCTGAGTGCTCCTAATCCGC 60.878 60.000 0.00 0.00 38.95 5.54
108 109 0.749649 CTGAGTGCTCCTAATCCGCT 59.250 55.000 0.00 0.00 0.00 5.52
109 110 1.137872 CTGAGTGCTCCTAATCCGCTT 59.862 52.381 0.00 0.00 0.00 4.68
110 111 1.555075 TGAGTGCTCCTAATCCGCTTT 59.445 47.619 0.00 0.00 0.00 3.51
111 112 2.027192 TGAGTGCTCCTAATCCGCTTTT 60.027 45.455 0.00 0.00 0.00 2.27
112 113 2.609916 GAGTGCTCCTAATCCGCTTTTC 59.390 50.000 0.00 0.00 0.00 2.29
113 114 2.027192 AGTGCTCCTAATCCGCTTTTCA 60.027 45.455 0.00 0.00 0.00 2.69
114 115 2.945668 GTGCTCCTAATCCGCTTTTCAT 59.054 45.455 0.00 0.00 0.00 2.57
115 116 2.945008 TGCTCCTAATCCGCTTTTCATG 59.055 45.455 0.00 0.00 0.00 3.07
116 117 2.945668 GCTCCTAATCCGCTTTTCATGT 59.054 45.455 0.00 0.00 0.00 3.21
117 118 3.242870 GCTCCTAATCCGCTTTTCATGTG 60.243 47.826 0.00 0.00 0.00 3.21
118 119 3.941483 CTCCTAATCCGCTTTTCATGTGT 59.059 43.478 0.00 0.00 0.00 3.72
119 120 5.092554 TCCTAATCCGCTTTTCATGTGTA 57.907 39.130 0.00 0.00 0.00 2.90
120 121 5.680619 TCCTAATCCGCTTTTCATGTGTAT 58.319 37.500 0.00 0.00 0.00 2.29
121 122 5.527214 TCCTAATCCGCTTTTCATGTGTATG 59.473 40.000 0.00 0.00 35.57 2.39
122 123 5.296780 CCTAATCCGCTTTTCATGTGTATGT 59.703 40.000 0.00 0.00 35.73 2.29
123 124 5.643379 AATCCGCTTTTCATGTGTATGTT 57.357 34.783 0.00 0.00 35.73 2.71
124 125 6.751514 AATCCGCTTTTCATGTGTATGTTA 57.248 33.333 0.00 0.00 35.73 2.41
125 126 5.539582 TCCGCTTTTCATGTGTATGTTAC 57.460 39.130 0.00 0.00 35.73 2.50
126 127 5.242434 TCCGCTTTTCATGTGTATGTTACT 58.758 37.500 0.00 0.00 35.73 2.24
127 128 6.399743 TCCGCTTTTCATGTGTATGTTACTA 58.600 36.000 0.00 0.00 35.73 1.82
128 129 6.533723 TCCGCTTTTCATGTGTATGTTACTAG 59.466 38.462 0.00 0.00 35.73 2.57
129 130 6.312918 CCGCTTTTCATGTGTATGTTACTAGT 59.687 38.462 0.00 0.00 35.73 2.57
130 131 7.391786 CGCTTTTCATGTGTATGTTACTAGTC 58.608 38.462 0.00 0.00 35.73 2.59
131 132 7.275779 CGCTTTTCATGTGTATGTTACTAGTCT 59.724 37.037 0.00 0.00 35.73 3.24
132 133 9.582431 GCTTTTCATGTGTATGTTACTAGTCTA 57.418 33.333 0.00 0.00 35.73 2.59
159 160 9.979897 TGTTACTATCTTTACAGTAGGGAGTAA 57.020 33.333 0.00 0.00 0.00 2.24
161 162 9.979897 TTACTATCTTTACAGTAGGGAGTAACA 57.020 33.333 0.00 0.00 30.55 2.41
166 167 8.834004 TCTTTACAGTAGGGAGTAACATATGT 57.166 34.615 1.41 1.41 30.55 2.29
167 168 8.692710 TCTTTACAGTAGGGAGTAACATATGTG 58.307 37.037 9.63 0.00 30.55 3.21
168 169 7.966339 TTACAGTAGGGAGTAACATATGTGT 57.034 36.000 9.63 2.63 41.28 3.72
169 170 6.222038 ACAGTAGGGAGTAACATATGTGTG 57.778 41.667 9.63 0.00 38.92 3.82
170 171 5.128827 ACAGTAGGGAGTAACATATGTGTGG 59.871 44.000 9.63 0.00 38.92 4.17
171 172 5.128827 CAGTAGGGAGTAACATATGTGTGGT 59.871 44.000 9.63 0.00 38.92 4.16
172 173 6.322969 CAGTAGGGAGTAACATATGTGTGGTA 59.677 42.308 9.63 0.00 38.92 3.25
173 174 6.899075 AGTAGGGAGTAACATATGTGTGGTAA 59.101 38.462 9.63 0.00 38.92 2.85
174 175 5.985911 AGGGAGTAACATATGTGTGGTAAC 58.014 41.667 9.63 1.91 38.92 2.50
217 218 6.992063 AGACTATAAACACATCTTGCCTTG 57.008 37.500 0.00 0.00 0.00 3.61
218 219 6.711277 AGACTATAAACACATCTTGCCTTGA 58.289 36.000 0.00 0.00 0.00 3.02
219 220 7.341805 AGACTATAAACACATCTTGCCTTGAT 58.658 34.615 0.00 0.00 0.00 2.57
220 221 8.486210 AGACTATAAACACATCTTGCCTTGATA 58.514 33.333 0.00 0.00 0.00 2.15
221 222 9.277783 GACTATAAACACATCTTGCCTTGATAT 57.722 33.333 0.00 0.00 0.00 1.63
222 223 9.060347 ACTATAAACACATCTTGCCTTGATATG 57.940 33.333 0.00 0.00 0.00 1.78
223 224 7.886629 ATAAACACATCTTGCCTTGATATGT 57.113 32.000 0.00 0.00 33.58 2.29
226 227 4.916870 CACATCTTGCCTTGATATGTGTG 58.083 43.478 0.00 0.00 41.46 3.82
227 228 4.637091 CACATCTTGCCTTGATATGTGTGA 59.363 41.667 0.00 0.00 41.46 3.58
228 229 5.298527 CACATCTTGCCTTGATATGTGTGAT 59.701 40.000 0.00 0.00 41.46 3.06
229 230 5.298527 ACATCTTGCCTTGATATGTGTGATG 59.701 40.000 0.00 0.00 35.23 3.07
230 231 4.847198 TCTTGCCTTGATATGTGTGATGT 58.153 39.130 0.00 0.00 0.00 3.06
231 232 5.255687 TCTTGCCTTGATATGTGTGATGTT 58.744 37.500 0.00 0.00 0.00 2.71
232 233 6.413892 TCTTGCCTTGATATGTGTGATGTTA 58.586 36.000 0.00 0.00 0.00 2.41
233 234 6.316140 TCTTGCCTTGATATGTGTGATGTTAC 59.684 38.462 0.00 0.00 0.00 2.50
234 235 5.744171 TGCCTTGATATGTGTGATGTTACT 58.256 37.500 0.00 0.00 0.00 2.24
235 236 5.817296 TGCCTTGATATGTGTGATGTTACTC 59.183 40.000 0.00 0.00 0.00 2.59
236 237 5.817296 GCCTTGATATGTGTGATGTTACTCA 59.183 40.000 0.00 0.00 0.00 3.41
237 238 6.484643 GCCTTGATATGTGTGATGTTACTCAT 59.515 38.462 0.00 0.00 38.11 2.90
238 239 7.657354 GCCTTGATATGTGTGATGTTACTCATA 59.343 37.037 0.00 0.00 39.73 2.15
239 240 8.982685 CCTTGATATGTGTGATGTTACTCATAC 58.017 37.037 0.00 5.35 38.84 2.39
240 241 9.755804 CTTGATATGTGTGATGTTACTCATACT 57.244 33.333 10.75 3.32 38.84 2.12
300 301 9.755804 TTTGTTTATTTATTGCTTGTCACATCA 57.244 25.926 0.00 0.00 0.00 3.07
301 302 9.926158 TTGTTTATTTATTGCTTGTCACATCAT 57.074 25.926 0.00 0.00 0.00 2.45
302 303 9.571810 TGTTTATTTATTGCTTGTCACATCATC 57.428 29.630 0.00 0.00 0.00 2.92
303 304 9.793252 GTTTATTTATTGCTTGTCACATCATCT 57.207 29.630 0.00 0.00 0.00 2.90
312 313 8.969260 TGCTTGTCACATCATCTATTTTATCT 57.031 30.769 0.00 0.00 0.00 1.98
355 356 9.043548 ACTATCTATGTTACTTTTACTGTGGGT 57.956 33.333 0.00 0.00 0.00 4.51
358 359 8.426569 TCTATGTTACTTTTACTGTGGGTAGT 57.573 34.615 0.00 0.00 34.71 2.73
359 360 8.526147 TCTATGTTACTTTTACTGTGGGTAGTC 58.474 37.037 0.00 0.00 32.19 2.59
360 361 6.736110 TGTTACTTTTACTGTGGGTAGTCT 57.264 37.500 0.00 0.00 32.19 3.24
361 362 6.518493 TGTTACTTTTACTGTGGGTAGTCTG 58.482 40.000 0.00 0.00 32.19 3.51
362 363 6.324512 TGTTACTTTTACTGTGGGTAGTCTGA 59.675 38.462 0.00 0.00 32.19 3.27
363 364 7.015877 TGTTACTTTTACTGTGGGTAGTCTGAT 59.984 37.037 0.00 0.00 32.19 2.90
364 365 6.435292 ACTTTTACTGTGGGTAGTCTGATT 57.565 37.500 0.00 0.00 32.19 2.57
365 366 6.838382 ACTTTTACTGTGGGTAGTCTGATTT 58.162 36.000 0.00 0.00 32.19 2.17
366 367 7.970102 ACTTTTACTGTGGGTAGTCTGATTTA 58.030 34.615 0.00 0.00 32.19 1.40
367 368 8.434392 ACTTTTACTGTGGGTAGTCTGATTTAA 58.566 33.333 0.00 0.00 32.19 1.52
368 369 8.842358 TTTTACTGTGGGTAGTCTGATTTAAG 57.158 34.615 0.00 0.00 32.19 1.85
369 370 7.549147 TTACTGTGGGTAGTCTGATTTAAGT 57.451 36.000 0.00 0.00 32.19 2.24
370 371 5.794894 ACTGTGGGTAGTCTGATTTAAGTG 58.205 41.667 0.00 0.00 0.00 3.16
371 372 5.307196 ACTGTGGGTAGTCTGATTTAAGTGT 59.693 40.000 0.00 0.00 0.00 3.55
372 373 6.182507 TGTGGGTAGTCTGATTTAAGTGTT 57.817 37.500 0.00 0.00 0.00 3.32
373 374 6.228258 TGTGGGTAGTCTGATTTAAGTGTTC 58.772 40.000 0.00 0.00 0.00 3.18
374 375 6.042781 TGTGGGTAGTCTGATTTAAGTGTTCT 59.957 38.462 0.00 0.00 0.00 3.01
375 376 6.590677 GTGGGTAGTCTGATTTAAGTGTTCTC 59.409 42.308 0.00 0.00 0.00 2.87
376 377 6.107343 GGGTAGTCTGATTTAAGTGTTCTCC 58.893 44.000 0.00 0.00 0.00 3.71
377 378 5.805994 GGTAGTCTGATTTAAGTGTTCTCCG 59.194 44.000 0.00 0.00 0.00 4.63
378 379 5.723672 AGTCTGATTTAAGTGTTCTCCGA 57.276 39.130 0.00 0.00 0.00 4.55
379 380 5.715070 AGTCTGATTTAAGTGTTCTCCGAG 58.285 41.667 0.00 0.00 0.00 4.63
380 381 4.865365 GTCTGATTTAAGTGTTCTCCGAGG 59.135 45.833 0.00 0.00 0.00 4.63
381 382 4.770531 TCTGATTTAAGTGTTCTCCGAGGA 59.229 41.667 0.00 0.00 0.00 3.71
382 383 5.073311 TGATTTAAGTGTTCTCCGAGGAG 57.927 43.478 12.78 12.78 43.21 3.69
390 391 3.768008 TCTCCGAGGAGACAGGTTT 57.232 52.632 17.24 0.00 45.26 3.27
391 392 2.893215 TCTCCGAGGAGACAGGTTTA 57.107 50.000 17.24 0.00 45.26 2.01
392 393 2.724454 TCTCCGAGGAGACAGGTTTAG 58.276 52.381 17.24 0.00 45.26 1.85
393 394 2.307980 TCTCCGAGGAGACAGGTTTAGA 59.692 50.000 17.24 0.00 45.26 2.10
394 395 2.685897 CTCCGAGGAGACAGGTTTAGAG 59.314 54.545 13.69 0.00 44.53 2.43
395 396 2.307980 TCCGAGGAGACAGGTTTAGAGA 59.692 50.000 0.00 0.00 0.00 3.10
396 397 3.053544 TCCGAGGAGACAGGTTTAGAGAT 60.054 47.826 0.00 0.00 0.00 2.75
397 398 3.067461 CCGAGGAGACAGGTTTAGAGATG 59.933 52.174 0.00 0.00 0.00 2.90
398 399 3.490078 CGAGGAGACAGGTTTAGAGATGC 60.490 52.174 0.00 0.00 0.00 3.91
399 400 3.704061 GAGGAGACAGGTTTAGAGATGCT 59.296 47.826 0.00 0.00 0.00 3.79
400 401 4.100373 AGGAGACAGGTTTAGAGATGCTT 58.900 43.478 0.00 0.00 0.00 3.91
401 402 4.534103 AGGAGACAGGTTTAGAGATGCTTT 59.466 41.667 0.00 0.00 0.00 3.51
402 403 5.721960 AGGAGACAGGTTTAGAGATGCTTTA 59.278 40.000 0.00 0.00 0.00 1.85
403 404 6.213600 AGGAGACAGGTTTAGAGATGCTTTAA 59.786 38.462 0.00 0.00 0.00 1.52
404 405 6.879458 GGAGACAGGTTTAGAGATGCTTTAAA 59.121 38.462 0.00 0.00 0.00 1.52
405 406 7.065204 GGAGACAGGTTTAGAGATGCTTTAAAG 59.935 40.741 11.02 11.02 0.00 1.85
406 407 7.454225 AGACAGGTTTAGAGATGCTTTAAAGT 58.546 34.615 16.38 0.00 0.00 2.66
407 408 7.939588 AGACAGGTTTAGAGATGCTTTAAAGTT 59.060 33.333 16.38 4.93 0.00 2.66
408 409 9.216117 GACAGGTTTAGAGATGCTTTAAAGTTA 57.784 33.333 16.38 6.89 0.00 2.24
409 410 9.220767 ACAGGTTTAGAGATGCTTTAAAGTTAG 57.779 33.333 16.38 0.00 0.00 2.34
410 411 9.220767 CAGGTTTAGAGATGCTTTAAAGTTAGT 57.779 33.333 16.38 0.05 0.00 2.24
411 412 9.220767 AGGTTTAGAGATGCTTTAAAGTTAGTG 57.779 33.333 16.38 0.00 0.00 2.74
412 413 7.963465 GGTTTAGAGATGCTTTAAAGTTAGTGC 59.037 37.037 16.38 2.69 0.00 4.40
413 414 8.722394 GTTTAGAGATGCTTTAAAGTTAGTGCT 58.278 33.333 16.38 9.59 0.00 4.40
414 415 9.938280 TTTAGAGATGCTTTAAAGTTAGTGCTA 57.062 29.630 16.38 8.76 0.00 3.49
416 417 8.430801 AGAGATGCTTTAAAGTTAGTGCTATG 57.569 34.615 16.38 0.00 0.00 2.23
417 418 7.011857 AGAGATGCTTTAAAGTTAGTGCTATGC 59.988 37.037 16.38 0.00 0.00 3.14
418 419 6.599244 AGATGCTTTAAAGTTAGTGCTATGCA 59.401 34.615 16.38 5.10 35.60 3.96
419 420 6.182039 TGCTTTAAAGTTAGTGCTATGCAG 57.818 37.500 16.38 0.00 40.08 4.41
420 421 5.123820 TGCTTTAAAGTTAGTGCTATGCAGG 59.876 40.000 16.38 0.00 40.08 4.85
421 422 5.123979 GCTTTAAAGTTAGTGCTATGCAGGT 59.876 40.000 16.38 0.00 40.08 4.00
422 423 6.349363 GCTTTAAAGTTAGTGCTATGCAGGTT 60.349 38.462 16.38 0.00 40.08 3.50
423 424 6.494893 TTAAAGTTAGTGCTATGCAGGTTG 57.505 37.500 0.00 0.00 40.08 3.77
424 425 3.981071 AGTTAGTGCTATGCAGGTTGA 57.019 42.857 0.00 0.00 40.08 3.18
425 426 4.494091 AGTTAGTGCTATGCAGGTTGAT 57.506 40.909 0.00 0.00 40.08 2.57
426 427 4.194640 AGTTAGTGCTATGCAGGTTGATG 58.805 43.478 0.00 0.00 40.08 3.07
427 428 4.080919 AGTTAGTGCTATGCAGGTTGATGA 60.081 41.667 0.00 0.00 40.08 2.92
428 429 2.915349 AGTGCTATGCAGGTTGATGAG 58.085 47.619 0.00 0.00 40.08 2.90
429 430 2.238144 AGTGCTATGCAGGTTGATGAGT 59.762 45.455 0.00 0.00 40.08 3.41
430 431 2.353889 GTGCTATGCAGGTTGATGAGTG 59.646 50.000 0.00 0.00 40.08 3.51
431 432 2.236893 TGCTATGCAGGTTGATGAGTGA 59.763 45.455 0.00 0.00 33.32 3.41
432 433 3.273434 GCTATGCAGGTTGATGAGTGAA 58.727 45.455 0.00 0.00 0.00 3.18
433 434 3.881688 GCTATGCAGGTTGATGAGTGAAT 59.118 43.478 0.00 0.00 0.00 2.57
434 435 4.261072 GCTATGCAGGTTGATGAGTGAATG 60.261 45.833 0.00 0.00 0.00 2.67
435 436 1.814394 TGCAGGTTGATGAGTGAATGC 59.186 47.619 0.00 0.00 0.00 3.56
436 437 1.814394 GCAGGTTGATGAGTGAATGCA 59.186 47.619 0.00 0.00 32.79 3.96
437 438 2.426024 GCAGGTTGATGAGTGAATGCAT 59.574 45.455 0.00 0.00 32.79 3.96
438 439 3.628942 GCAGGTTGATGAGTGAATGCATA 59.371 43.478 0.00 0.00 32.79 3.14
439 440 4.497006 GCAGGTTGATGAGTGAATGCATAC 60.497 45.833 0.00 0.00 32.79 2.39
440 441 4.637091 CAGGTTGATGAGTGAATGCATACA 59.363 41.667 0.00 0.00 0.00 2.29
441 442 5.124297 CAGGTTGATGAGTGAATGCATACAA 59.876 40.000 0.00 0.00 0.00 2.41
442 443 5.889853 AGGTTGATGAGTGAATGCATACAAT 59.110 36.000 0.00 0.00 0.00 2.71
443 444 6.039047 AGGTTGATGAGTGAATGCATACAATC 59.961 38.462 0.00 4.24 0.00 2.67
444 445 6.183360 GGTTGATGAGTGAATGCATACAATCA 60.183 38.462 0.00 6.75 43.23 2.57
445 446 7.252708 GTTGATGAGTGAATGCATACAATCAA 58.747 34.615 17.92 17.92 42.58 2.57
446 447 7.393841 TGATGAGTGAATGCATACAATCAAA 57.606 32.000 0.00 0.00 42.58 2.69
447 448 7.252708 TGATGAGTGAATGCATACAATCAAAC 58.747 34.615 0.00 0.00 42.58 2.93
448 449 5.630061 TGAGTGAATGCATACAATCAAACG 58.370 37.500 0.00 0.00 37.45 3.60
449 450 4.985413 AGTGAATGCATACAATCAAACGG 58.015 39.130 0.00 0.00 37.45 4.44
450 451 4.458989 AGTGAATGCATACAATCAAACGGT 59.541 37.500 0.00 0.00 37.45 4.83
451 452 4.793216 GTGAATGCATACAATCAAACGGTC 59.207 41.667 0.00 0.00 37.45 4.79
452 453 3.673746 ATGCATACAATCAAACGGTCG 57.326 42.857 0.00 0.00 0.00 4.79
453 454 1.129624 TGCATACAATCAAACGGTCGC 59.870 47.619 0.00 0.00 0.00 5.19
454 455 1.129624 GCATACAATCAAACGGTCGCA 59.870 47.619 0.00 0.00 0.00 5.10
455 456 2.769376 CATACAATCAAACGGTCGCAC 58.231 47.619 0.00 0.00 0.00 5.34
456 457 1.149987 TACAATCAAACGGTCGCACC 58.850 50.000 0.00 0.00 34.05 5.01
457 458 1.209127 CAATCAAACGGTCGCACCC 59.791 57.895 0.00 0.00 33.75 4.61
458 459 1.228003 AATCAAACGGTCGCACCCA 60.228 52.632 0.00 0.00 33.75 4.51
459 460 1.234615 AATCAAACGGTCGCACCCAG 61.235 55.000 0.00 0.00 33.75 4.45
477 478 0.737715 AGCAGCTCGCCTTAAACTCG 60.738 55.000 0.00 0.00 44.04 4.18
498 499 1.376037 GTCGCAGGAAGGAAGTGGG 60.376 63.158 0.00 0.00 0.00 4.61
502 503 1.296715 CAGGAAGGAAGTGGGGACG 59.703 63.158 0.00 0.00 0.00 4.79
503 504 1.152096 AGGAAGGAAGTGGGGACGT 60.152 57.895 0.00 0.00 0.00 4.34
504 505 0.767060 AGGAAGGAAGTGGGGACGTT 60.767 55.000 0.00 0.00 0.00 3.99
505 506 0.321387 GGAAGGAAGTGGGGACGTTC 60.321 60.000 0.00 0.00 0.00 3.95
559 560 1.478510 ACCACACGACTCATGAGATCC 59.521 52.381 29.27 15.38 0.00 3.36
576 577 3.385111 AGATCCACGGTCAATAAGAGGAC 59.615 47.826 0.00 0.00 0.00 3.85
613 614 1.203237 TCTCCCACTCTGCTTCTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
658 672 1.939785 CTACGGTGCGTGCTCGATC 60.940 63.158 13.13 3.55 41.39 3.69
665 679 2.882777 CGTGCTCGATCGCTTGCT 60.883 61.111 21.32 0.00 39.71 3.91
666 680 2.447887 CGTGCTCGATCGCTTGCTT 61.448 57.895 21.32 0.00 39.71 3.91
667 681 1.059994 GTGCTCGATCGCTTGCTTG 59.940 57.895 21.32 5.10 0.00 4.01
669 683 2.705826 CTCGATCGCTTGCTTGCC 59.294 61.111 11.09 0.00 0.00 4.52
670 684 3.147889 CTCGATCGCTTGCTTGCCG 62.148 63.158 11.09 0.00 0.00 5.69
740 763 2.113860 TGCCTCGATCCTTCTTTTGG 57.886 50.000 0.00 0.00 0.00 3.28
815 1082 4.489771 CGTCCATCCACCAGGGCC 62.490 72.222 0.00 0.00 36.21 5.80
816 1083 3.017581 GTCCATCCACCAGGGCCT 61.018 66.667 0.00 0.00 36.21 5.19
817 1084 1.692749 GTCCATCCACCAGGGCCTA 60.693 63.158 5.28 0.00 36.21 3.93
818 1085 1.062488 GTCCATCCACCAGGGCCTAT 61.062 60.000 5.28 0.00 36.21 2.57
859 1412 2.664851 CGCGCCTCAACTCAACCA 60.665 61.111 0.00 0.00 0.00 3.67
862 1415 0.674895 GCGCCTCAACTCAACCATCT 60.675 55.000 0.00 0.00 0.00 2.90
916 1479 1.203112 TCCATCCTAGCTAGGCTCCTG 60.203 57.143 31.76 23.42 43.31 3.86
998 1572 2.788807 AGGAGAGGAGGAGCTGATAAGA 59.211 50.000 0.00 0.00 0.00 2.10
999 1573 3.206412 AGGAGAGGAGGAGCTGATAAGAA 59.794 47.826 0.00 0.00 0.00 2.52
1066 1640 2.526432 AGAACGCCTACAAGGAGAAGA 58.474 47.619 3.57 0.00 37.36 2.87
1070 1644 2.832129 ACGCCTACAAGGAGAAGATGAA 59.168 45.455 3.57 0.00 37.36 2.57
1085 1659 0.322816 ATGAAGCGCATGGACCAAGT 60.323 50.000 11.47 0.00 35.42 3.16
1096 1670 2.281761 ACCAAGTGGAAGCTGCGG 60.282 61.111 3.83 0.00 38.94 5.69
1097 1671 3.741476 CCAAGTGGAAGCTGCGGC 61.741 66.667 10.33 10.33 37.39 6.53
1098 1672 2.979676 CAAGTGGAAGCTGCGGCA 60.980 61.111 21.93 1.29 41.70 5.69
1140 1723 2.759795 GGCAAGGACAAGGAGGCT 59.240 61.111 0.00 0.00 0.00 4.58
1486 2108 4.993705 TCCTTCATTAGTTGGGTTGACT 57.006 40.909 0.00 0.00 0.00 3.41
1498 2183 2.950975 TGGGTTGACTTCCGTTTTTACC 59.049 45.455 0.00 0.00 0.00 2.85
1664 3531 7.327214 AGGAGATCAAGTTGATTCTCTGTTAC 58.673 38.462 26.70 17.75 37.20 2.50
1666 3533 7.604164 GGAGATCAAGTTGATTCTCTGTTACAA 59.396 37.037 26.70 0.00 37.20 2.41
1688 4035 2.624838 CACTATTGCATTGGGGGATGAC 59.375 50.000 0.00 0.00 0.00 3.06
1714 4061 2.700371 TGCCTTCTCACTCTCTTGTTGA 59.300 45.455 0.00 0.00 0.00 3.18
1717 4064 4.562347 GCCTTCTCACTCTCTTGTTGATGA 60.562 45.833 0.00 0.00 0.00 2.92
1720 4067 5.990120 TCTCACTCTCTTGTTGATGATGA 57.010 39.130 0.00 0.00 0.00 2.92
1721 4068 5.963594 TCTCACTCTCTTGTTGATGATGAG 58.036 41.667 0.00 0.00 33.84 2.90
1725 4150 5.524281 CACTCTCTTGTTGATGATGAGGATG 59.476 44.000 0.00 0.00 0.00 3.51
1794 4269 6.862711 AACTAGACCTTTCTAACAACTTGC 57.137 37.500 0.00 0.00 33.73 4.01
1814 4290 0.737367 CTTGCTCTCGATTGGCGTGA 60.737 55.000 0.00 0.00 41.80 4.35
1852 4408 1.338136 ATACCCCGCAAGAGAGGTGG 61.338 60.000 0.00 0.00 43.02 4.61
1916 4561 4.748102 CAGTAGACGGCAAGAACTTAAACA 59.252 41.667 0.00 0.00 0.00 2.83
1930 4575 5.940192 ACTTAAACAAAGACGATGATGCA 57.060 34.783 0.00 0.00 38.67 3.96
1932 4577 3.559238 AAACAAAGACGATGATGCACC 57.441 42.857 0.00 0.00 0.00 5.01
1933 4578 2.183478 ACAAAGACGATGATGCACCA 57.817 45.000 0.00 0.00 0.00 4.17
1934 4579 2.715046 ACAAAGACGATGATGCACCAT 58.285 42.857 0.00 0.00 0.00 3.55
1935 4580 3.084039 ACAAAGACGATGATGCACCATT 58.916 40.909 0.00 0.00 0.00 3.16
1936 4581 4.260985 ACAAAGACGATGATGCACCATTA 58.739 39.130 0.00 0.00 0.00 1.90
1962 4607 3.256631 GTGTCCTTGTCAGAAATTGGCAT 59.743 43.478 0.00 0.00 41.93 4.40
1972 4617 6.261603 TGTCAGAAATTGGCATATCAGCTAAG 59.738 38.462 0.00 0.00 36.23 2.18
2033 5382 0.916086 TCAATATCAAGGCGGGGTGT 59.084 50.000 0.00 0.00 0.00 4.16
2071 5420 9.503427 GTTTACTTGTAATGTCAATATCAAGGC 57.497 33.333 0.00 0.00 37.27 4.35
2084 5440 8.897752 GTCAATATCAAGGCTAAAAATCAGACT 58.102 33.333 0.00 0.00 30.52 3.24
2116 5472 8.849168 TCTGGTAAATTGGCATATCAACTAATG 58.151 33.333 0.00 0.00 0.00 1.90
2117 5473 8.759481 TGGTAAATTGGCATATCAACTAATGA 57.241 30.769 0.00 0.00 43.67 2.57
2118 5474 9.194972 TGGTAAATTGGCATATCAACTAATGAA 57.805 29.630 0.00 0.00 42.54 2.57
2119 5475 9.683069 GGTAAATTGGCATATCAACTAATGAAG 57.317 33.333 0.00 0.00 42.54 3.02
2120 5476 9.683069 GTAAATTGGCATATCAACTAATGAAGG 57.317 33.333 0.00 0.00 42.54 3.46
2121 5477 8.537728 AAATTGGCATATCAACTAATGAAGGA 57.462 30.769 0.00 0.00 42.54 3.36
2122 5478 8.537728 AATTGGCATATCAACTAATGAAGGAA 57.462 30.769 0.00 0.00 42.54 3.36
2123 5479 8.716674 ATTGGCATATCAACTAATGAAGGAAT 57.283 30.769 0.00 0.00 42.54 3.01
2124 5480 7.514784 TGGCATATCAACTAATGAAGGAATG 57.485 36.000 0.00 0.00 42.54 2.67
2125 5481 7.289310 TGGCATATCAACTAATGAAGGAATGA 58.711 34.615 0.00 0.00 42.54 2.57
2126 5482 7.229306 TGGCATATCAACTAATGAAGGAATGAC 59.771 37.037 0.00 0.00 42.54 3.06
2142 5498 3.668141 ATGACATATTGCTCCCCACAA 57.332 42.857 0.00 0.00 0.00 3.33
2174 5530 6.985653 AGGCTAAACAGATATTGCTAGAGA 57.014 37.500 0.00 0.00 0.00 3.10
2176 5532 5.929415 GGCTAAACAGATATTGCTAGAGACC 59.071 44.000 0.00 0.00 0.00 3.85
2180 5536 9.290988 CTAAACAGATATTGCTAGAGACCTAGA 57.709 37.037 0.00 0.00 44.00 2.43
2181 5537 7.759489 AACAGATATTGCTAGAGACCTAGAG 57.241 40.000 0.00 0.00 44.00 2.43
2182 5538 6.848069 ACAGATATTGCTAGAGACCTAGAGT 58.152 40.000 0.00 0.00 44.00 3.24
2183 5539 7.294584 ACAGATATTGCTAGAGACCTAGAGTT 58.705 38.462 0.00 0.00 44.00 3.01
2184 5540 8.441572 ACAGATATTGCTAGAGACCTAGAGTTA 58.558 37.037 0.00 0.00 44.00 2.24
2185 5541 8.726988 CAGATATTGCTAGAGACCTAGAGTTAC 58.273 40.741 0.00 0.00 44.00 2.50
2186 5542 8.441572 AGATATTGCTAGAGACCTAGAGTTACA 58.558 37.037 0.00 0.00 44.00 2.41
2212 5568 5.410746 GTCAGATGAATTTGACAGCTCAAGA 59.589 40.000 8.63 0.00 42.47 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.695217 ATGGTTGTTGCCTGTTAATACG 57.305 40.909 0.00 0.00 0.00 3.06
1 2 5.867174 GGAAATGGTTGTTGCCTGTTAATAC 59.133 40.000 0.00 0.00 0.00 1.89
3 4 4.592778 AGGAAATGGTTGTTGCCTGTTAAT 59.407 37.500 0.00 0.00 0.00 1.40
4 5 3.964031 AGGAAATGGTTGTTGCCTGTTAA 59.036 39.130 0.00 0.00 0.00 2.01
5 6 3.571590 AGGAAATGGTTGTTGCCTGTTA 58.428 40.909 0.00 0.00 0.00 2.41
7 8 1.963515 GAGGAAATGGTTGTTGCCTGT 59.036 47.619 0.00 0.00 0.00 4.00
8 9 1.273327 GGAGGAAATGGTTGTTGCCTG 59.727 52.381 0.00 0.00 0.00 4.85
9 10 1.133199 TGGAGGAAATGGTTGTTGCCT 60.133 47.619 0.00 0.00 0.00 4.75
10 11 1.337118 TGGAGGAAATGGTTGTTGCC 58.663 50.000 0.00 0.00 0.00 4.52
11 12 3.181466 ACTTTGGAGGAAATGGTTGTTGC 60.181 43.478 0.00 0.00 0.00 4.17
12 13 4.670896 ACTTTGGAGGAAATGGTTGTTG 57.329 40.909 0.00 0.00 0.00 3.33
13 14 4.714308 TCAACTTTGGAGGAAATGGTTGTT 59.286 37.500 0.00 0.00 0.00 2.83
14 15 4.285863 TCAACTTTGGAGGAAATGGTTGT 58.714 39.130 0.00 0.00 0.00 3.32
15 16 4.935352 TCAACTTTGGAGGAAATGGTTG 57.065 40.909 0.00 0.00 0.00 3.77
16 17 4.202111 CGTTCAACTTTGGAGGAAATGGTT 60.202 41.667 0.00 0.00 0.00 3.67
17 18 3.317993 CGTTCAACTTTGGAGGAAATGGT 59.682 43.478 0.00 0.00 0.00 3.55
18 19 3.305335 CCGTTCAACTTTGGAGGAAATGG 60.305 47.826 0.00 0.00 0.00 3.16
19 20 3.568007 TCCGTTCAACTTTGGAGGAAATG 59.432 43.478 0.00 0.00 0.00 2.32
20 21 3.827722 TCCGTTCAACTTTGGAGGAAAT 58.172 40.909 0.00 0.00 0.00 2.17
21 22 3.284793 TCCGTTCAACTTTGGAGGAAA 57.715 42.857 0.00 0.00 0.00 3.13
22 23 3.408634 GATCCGTTCAACTTTGGAGGAA 58.591 45.455 5.51 0.00 33.21 3.36
23 24 2.290071 GGATCCGTTCAACTTTGGAGGA 60.290 50.000 0.00 4.34 33.21 3.71
24 25 2.084546 GGATCCGTTCAACTTTGGAGG 58.915 52.381 0.00 0.00 33.21 4.30
25 26 2.084546 GGGATCCGTTCAACTTTGGAG 58.915 52.381 5.45 0.00 33.21 3.86
26 27 1.702957 AGGGATCCGTTCAACTTTGGA 59.297 47.619 5.45 0.00 34.45 3.53
27 28 2.200373 AGGGATCCGTTCAACTTTGG 57.800 50.000 5.45 0.00 0.00 3.28
28 29 4.081642 TCTCTAGGGATCCGTTCAACTTTG 60.082 45.833 13.09 0.00 0.00 2.77
29 30 4.081586 GTCTCTAGGGATCCGTTCAACTTT 60.082 45.833 13.09 0.00 0.00 2.66
30 31 3.447944 GTCTCTAGGGATCCGTTCAACTT 59.552 47.826 13.09 0.00 0.00 2.66
31 32 3.025262 GTCTCTAGGGATCCGTTCAACT 58.975 50.000 13.09 1.48 0.00 3.16
32 33 2.101082 GGTCTCTAGGGATCCGTTCAAC 59.899 54.545 13.09 6.37 0.00 3.18
33 34 2.385803 GGTCTCTAGGGATCCGTTCAA 58.614 52.381 13.09 0.00 0.00 2.69
34 35 1.749635 CGGTCTCTAGGGATCCGTTCA 60.750 57.143 19.54 0.00 35.65 3.18
35 36 0.953003 CGGTCTCTAGGGATCCGTTC 59.047 60.000 19.54 0.00 35.65 3.95
36 37 0.467659 CCGGTCTCTAGGGATCCGTT 60.468 60.000 23.39 2.17 37.25 4.44
37 38 1.150992 CCGGTCTCTAGGGATCCGT 59.849 63.158 23.39 12.41 37.25 4.69
38 39 0.606944 CTCCGGTCTCTAGGGATCCG 60.607 65.000 20.39 20.39 38.01 4.18
39 40 0.251430 CCTCCGGTCTCTAGGGATCC 60.251 65.000 1.92 1.92 0.00 3.36
40 41 3.349879 CCTCCGGTCTCTAGGGATC 57.650 63.158 0.00 0.00 0.00 3.36
44 45 1.529713 GCTCCCTCCGGTCTCTAGG 60.530 68.421 0.00 0.00 0.00 3.02
45 46 1.894756 CGCTCCCTCCGGTCTCTAG 60.895 68.421 0.00 0.00 0.00 2.43
46 47 2.192443 CGCTCCCTCCGGTCTCTA 59.808 66.667 0.00 0.00 0.00 2.43
47 48 4.824515 CCGCTCCCTCCGGTCTCT 62.825 72.222 0.00 0.00 40.84 3.10
48 49 4.816984 TCCGCTCCCTCCGGTCTC 62.817 72.222 0.00 0.00 45.71 3.36
54 55 2.240162 AAATCACGTCCGCTCCCTCC 62.240 60.000 0.00 0.00 0.00 4.30
55 56 0.806492 GAAATCACGTCCGCTCCCTC 60.806 60.000 0.00 0.00 0.00 4.30
56 57 1.218316 GAAATCACGTCCGCTCCCT 59.782 57.895 0.00 0.00 0.00 4.20
57 58 2.165301 CGAAATCACGTCCGCTCCC 61.165 63.158 0.00 0.00 0.00 4.30
58 59 2.165301 CCGAAATCACGTCCGCTCC 61.165 63.158 0.00 0.00 0.00 4.70
59 60 1.445582 ACCGAAATCACGTCCGCTC 60.446 57.895 0.00 0.00 0.00 5.03
60 61 1.736645 CACCGAAATCACGTCCGCT 60.737 57.895 0.00 0.00 0.00 5.52
61 62 2.736682 CCACCGAAATCACGTCCGC 61.737 63.158 0.00 0.00 0.00 5.54
62 63 2.098233 CCCACCGAAATCACGTCCG 61.098 63.158 0.00 0.00 0.00 4.79
63 64 1.743995 CCCCACCGAAATCACGTCC 60.744 63.158 0.00 0.00 0.00 4.79
64 65 1.004200 ACCCCACCGAAATCACGTC 60.004 57.895 0.00 0.00 0.00 4.34
65 66 1.302192 CACCCCACCGAAATCACGT 60.302 57.895 0.00 0.00 0.00 4.49
66 67 1.004320 TCACCCCACCGAAATCACG 60.004 57.895 0.00 0.00 0.00 4.35
67 68 0.036306 ACTCACCCCACCGAAATCAC 59.964 55.000 0.00 0.00 0.00 3.06
68 69 0.323629 GACTCACCCCACCGAAATCA 59.676 55.000 0.00 0.00 0.00 2.57
69 70 0.739813 CGACTCACCCCACCGAAATC 60.740 60.000 0.00 0.00 0.00 2.17
70 71 1.295423 CGACTCACCCCACCGAAAT 59.705 57.895 0.00 0.00 0.00 2.17
71 72 2.738480 CGACTCACCCCACCGAAA 59.262 61.111 0.00 0.00 0.00 3.46
72 73 3.998672 GCGACTCACCCCACCGAA 61.999 66.667 0.00 0.00 0.00 4.30
73 74 4.988716 AGCGACTCACCCCACCGA 62.989 66.667 0.00 0.00 0.00 4.69
74 75 4.742201 CAGCGACTCACCCCACCG 62.742 72.222 0.00 0.00 0.00 4.94
75 76 3.302347 CTCAGCGACTCACCCCACC 62.302 68.421 0.00 0.00 0.00 4.61
76 77 2.262915 CTCAGCGACTCACCCCAC 59.737 66.667 0.00 0.00 0.00 4.61
77 78 2.203640 ACTCAGCGACTCACCCCA 60.204 61.111 0.00 0.00 0.00 4.96
78 79 2.262915 CACTCAGCGACTCACCCC 59.737 66.667 0.00 0.00 0.00 4.95
79 80 2.433318 GCACTCAGCGACTCACCC 60.433 66.667 0.00 0.00 0.00 4.61
88 89 0.878086 GCGGATTAGGAGCACTCAGC 60.878 60.000 0.00 0.00 46.19 4.26
89 90 0.749649 AGCGGATTAGGAGCACTCAG 59.250 55.000 0.00 0.00 0.00 3.35
90 91 1.195115 AAGCGGATTAGGAGCACTCA 58.805 50.000 0.00 0.00 0.00 3.41
91 92 2.317530 AAAGCGGATTAGGAGCACTC 57.682 50.000 0.00 0.00 0.00 3.51
92 93 2.027192 TGAAAAGCGGATTAGGAGCACT 60.027 45.455 0.00 0.00 0.00 4.40
93 94 2.356135 TGAAAAGCGGATTAGGAGCAC 58.644 47.619 0.00 0.00 0.00 4.40
94 95 2.779755 TGAAAAGCGGATTAGGAGCA 57.220 45.000 0.00 0.00 0.00 4.26
95 96 2.945668 ACATGAAAAGCGGATTAGGAGC 59.054 45.455 0.00 0.00 0.00 4.70
96 97 3.941483 ACACATGAAAAGCGGATTAGGAG 59.059 43.478 0.00 0.00 0.00 3.69
97 98 3.950397 ACACATGAAAAGCGGATTAGGA 58.050 40.909 0.00 0.00 0.00 2.94
98 99 5.296780 ACATACACATGAAAAGCGGATTAGG 59.703 40.000 0.00 0.00 35.96 2.69
99 100 6.363577 ACATACACATGAAAAGCGGATTAG 57.636 37.500 0.00 0.00 35.96 1.73
100 101 6.751514 AACATACACATGAAAAGCGGATTA 57.248 33.333 0.00 0.00 35.96 1.75
101 102 5.643379 AACATACACATGAAAAGCGGATT 57.357 34.783 0.00 0.00 35.96 3.01
102 103 5.880332 AGTAACATACACATGAAAAGCGGAT 59.120 36.000 0.00 0.00 35.96 4.18
103 104 5.242434 AGTAACATACACATGAAAAGCGGA 58.758 37.500 0.00 0.00 35.96 5.54
104 105 5.545658 AGTAACATACACATGAAAAGCGG 57.454 39.130 0.00 0.00 35.96 5.52
105 106 7.275779 AGACTAGTAACATACACATGAAAAGCG 59.724 37.037 0.00 0.00 35.96 4.68
106 107 8.480643 AGACTAGTAACATACACATGAAAAGC 57.519 34.615 0.00 0.00 35.96 3.51
133 134 9.979897 TTACTCCCTACTGTAAAGATAGTAACA 57.020 33.333 0.00 0.00 29.80 2.41
135 136 9.979897 TGTTACTCCCTACTGTAAAGATAGTAA 57.020 33.333 0.00 0.00 29.80 2.24
140 141 9.435570 ACATATGTTACTCCCTACTGTAAAGAT 57.564 33.333 1.41 0.00 31.56 2.40
141 142 8.692710 CACATATGTTACTCCCTACTGTAAAGA 58.307 37.037 5.37 0.00 31.56 2.52
142 143 8.475639 ACACATATGTTACTCCCTACTGTAAAG 58.524 37.037 5.37 0.00 34.46 1.85
143 144 8.255206 CACACATATGTTACTCCCTACTGTAAA 58.745 37.037 5.37 0.00 36.72 2.01
144 145 7.147794 CCACACATATGTTACTCCCTACTGTAA 60.148 40.741 5.37 0.00 36.72 2.41
145 146 6.322969 CCACACATATGTTACTCCCTACTGTA 59.677 42.308 5.37 0.00 36.72 2.74
146 147 5.128827 CCACACATATGTTACTCCCTACTGT 59.871 44.000 5.37 0.00 36.72 3.55
147 148 5.128827 ACCACACATATGTTACTCCCTACTG 59.871 44.000 5.37 0.00 36.72 2.74
148 149 5.278061 ACCACACATATGTTACTCCCTACT 58.722 41.667 5.37 0.00 36.72 2.57
149 150 5.609533 ACCACACATATGTTACTCCCTAC 57.390 43.478 5.37 0.00 36.72 3.18
150 151 6.668718 TGTTACCACACATATGTTACTCCCTA 59.331 38.462 5.37 0.00 36.72 3.53
151 152 5.486063 TGTTACCACACATATGTTACTCCCT 59.514 40.000 5.37 0.00 36.72 4.20
152 153 5.736813 TGTTACCACACATATGTTACTCCC 58.263 41.667 5.37 0.00 36.72 4.30
153 154 6.238374 GCATGTTACCACACATATGTTACTCC 60.238 42.308 5.37 0.00 36.72 3.85
154 155 6.315144 TGCATGTTACCACACATATGTTACTC 59.685 38.462 5.37 0.00 36.72 2.59
155 156 6.176896 TGCATGTTACCACACATATGTTACT 58.823 36.000 5.37 0.00 36.72 2.24
156 157 6.429791 TGCATGTTACCACACATATGTTAC 57.570 37.500 5.37 0.00 36.72 2.50
157 158 6.431234 TGTTGCATGTTACCACACATATGTTA 59.569 34.615 5.37 0.00 36.72 2.41
158 159 5.242615 TGTTGCATGTTACCACACATATGTT 59.757 36.000 5.37 0.00 36.72 2.71
159 160 4.764308 TGTTGCATGTTACCACACATATGT 59.236 37.500 1.41 1.41 40.80 2.29
160 161 5.094812 GTGTTGCATGTTACCACACATATG 58.905 41.667 10.02 0.00 35.51 1.78
161 162 5.009631 AGTGTTGCATGTTACCACACATAT 58.990 37.500 15.74 0.00 35.51 1.78
162 163 4.393834 AGTGTTGCATGTTACCACACATA 58.606 39.130 15.74 0.00 35.51 2.29
163 164 3.221771 AGTGTTGCATGTTACCACACAT 58.778 40.909 15.74 1.51 37.93 3.21
164 165 2.649190 AGTGTTGCATGTTACCACACA 58.351 42.857 15.74 0.00 35.03 3.72
165 166 3.708563 AAGTGTTGCATGTTACCACAC 57.291 42.857 7.36 7.36 35.03 3.82
166 167 6.398234 AATAAAGTGTTGCATGTTACCACA 57.602 33.333 0.00 0.00 37.31 4.17
167 168 8.980143 ATAAATAAAGTGTTGCATGTTACCAC 57.020 30.769 0.00 0.00 0.00 4.16
191 192 9.113838 CAAGGCAAGATGTGTTTATAGTCTAAT 57.886 33.333 0.00 0.00 0.00 1.73
192 193 8.318412 TCAAGGCAAGATGTGTTTATAGTCTAA 58.682 33.333 0.00 0.00 0.00 2.10
193 194 7.847096 TCAAGGCAAGATGTGTTTATAGTCTA 58.153 34.615 0.00 0.00 0.00 2.59
194 195 6.711277 TCAAGGCAAGATGTGTTTATAGTCT 58.289 36.000 0.00 0.00 0.00 3.24
195 196 6.985188 TCAAGGCAAGATGTGTTTATAGTC 57.015 37.500 0.00 0.00 0.00 2.59
196 197 9.060347 CATATCAAGGCAAGATGTGTTTATAGT 57.940 33.333 7.46 0.00 32.13 2.12
197 198 9.060347 ACATATCAAGGCAAGATGTGTTTATAG 57.940 33.333 13.16 0.00 42.68 1.31
198 199 8.839343 CACATATCAAGGCAAGATGTGTTTATA 58.161 33.333 15.30 0.00 42.68 0.98
199 200 7.709947 CACATATCAAGGCAAGATGTGTTTAT 58.290 34.615 15.30 0.00 42.68 1.40
200 201 7.087409 CACATATCAAGGCAAGATGTGTTTA 57.913 36.000 15.30 0.00 42.68 2.01
201 202 5.957798 CACATATCAAGGCAAGATGTGTTT 58.042 37.500 15.30 0.00 42.68 2.83
202 203 5.571784 CACATATCAAGGCAAGATGTGTT 57.428 39.130 15.30 3.46 42.68 3.32
205 206 4.847198 TCACACATATCAAGGCAAGATGT 58.153 39.130 2.43 0.00 0.00 3.06
206 207 5.298527 ACATCACACATATCAAGGCAAGATG 59.701 40.000 0.00 0.00 36.24 2.90
207 208 5.443283 ACATCACACATATCAAGGCAAGAT 58.557 37.500 0.00 0.00 0.00 2.40
208 209 4.847198 ACATCACACATATCAAGGCAAGA 58.153 39.130 0.00 0.00 0.00 3.02
209 210 5.571784 AACATCACACATATCAAGGCAAG 57.428 39.130 0.00 0.00 0.00 4.01
210 211 6.179756 AGTAACATCACACATATCAAGGCAA 58.820 36.000 0.00 0.00 0.00 4.52
211 212 5.744171 AGTAACATCACACATATCAAGGCA 58.256 37.500 0.00 0.00 0.00 4.75
212 213 5.817296 TGAGTAACATCACACATATCAAGGC 59.183 40.000 0.00 0.00 0.00 4.35
213 214 8.982685 GTATGAGTAACATCACACATATCAAGG 58.017 37.037 0.00 0.00 40.07 3.61
214 215 9.755804 AGTATGAGTAACATCACACATATCAAG 57.244 33.333 0.00 0.00 40.07 3.02
274 275 9.755804 TGATGTGACAAGCAATAAATAAACAAA 57.244 25.926 0.00 0.00 0.00 2.83
275 276 9.926158 ATGATGTGACAAGCAATAAATAAACAA 57.074 25.926 0.00 0.00 0.00 2.83
276 277 9.571810 GATGATGTGACAAGCAATAAATAAACA 57.428 29.630 0.00 0.00 0.00 2.83
277 278 9.793252 AGATGATGTGACAAGCAATAAATAAAC 57.207 29.630 0.00 0.00 0.00 2.01
286 287 9.399797 AGATAAAATAGATGATGTGACAAGCAA 57.600 29.630 0.00 0.00 0.00 3.91
287 288 8.969260 AGATAAAATAGATGATGTGACAAGCA 57.031 30.769 0.00 0.00 0.00 3.91
329 330 9.043548 ACCCACAGTAAAAGTAACATAGATAGT 57.956 33.333 0.00 0.00 0.00 2.12
332 333 9.043548 ACTACCCACAGTAAAAGTAACATAGAT 57.956 33.333 0.00 0.00 0.00 1.98
333 334 8.426569 ACTACCCACAGTAAAAGTAACATAGA 57.573 34.615 0.00 0.00 0.00 1.98
334 335 8.529476 AGACTACCCACAGTAAAAGTAACATAG 58.471 37.037 0.00 0.00 0.00 2.23
335 336 8.308931 CAGACTACCCACAGTAAAAGTAACATA 58.691 37.037 0.00 0.00 0.00 2.29
336 337 7.015877 TCAGACTACCCACAGTAAAAGTAACAT 59.984 37.037 0.00 0.00 0.00 2.71
337 338 6.324512 TCAGACTACCCACAGTAAAAGTAACA 59.675 38.462 0.00 0.00 0.00 2.41
338 339 6.752168 TCAGACTACCCACAGTAAAAGTAAC 58.248 40.000 0.00 0.00 0.00 2.50
339 340 6.982160 TCAGACTACCCACAGTAAAAGTAA 57.018 37.500 0.00 0.00 0.00 2.24
340 341 7.549147 AATCAGACTACCCACAGTAAAAGTA 57.451 36.000 0.00 0.00 0.00 2.24
341 342 6.435292 AATCAGACTACCCACAGTAAAAGT 57.565 37.500 0.00 0.00 0.00 2.66
342 343 8.842358 TTAAATCAGACTACCCACAGTAAAAG 57.158 34.615 0.00 0.00 0.00 2.27
343 344 8.434392 ACTTAAATCAGACTACCCACAGTAAAA 58.566 33.333 0.00 0.00 0.00 1.52
344 345 7.876068 CACTTAAATCAGACTACCCACAGTAAA 59.124 37.037 0.00 0.00 0.00 2.01
345 346 7.015877 ACACTTAAATCAGACTACCCACAGTAA 59.984 37.037 0.00 0.00 0.00 2.24
346 347 6.495872 ACACTTAAATCAGACTACCCACAGTA 59.504 38.462 0.00 0.00 0.00 2.74
347 348 5.307196 ACACTTAAATCAGACTACCCACAGT 59.693 40.000 0.00 0.00 0.00 3.55
348 349 5.794894 ACACTTAAATCAGACTACCCACAG 58.205 41.667 0.00 0.00 0.00 3.66
349 350 5.818678 ACACTTAAATCAGACTACCCACA 57.181 39.130 0.00 0.00 0.00 4.17
350 351 6.465084 AGAACACTTAAATCAGACTACCCAC 58.535 40.000 0.00 0.00 0.00 4.61
351 352 6.295688 GGAGAACACTTAAATCAGACTACCCA 60.296 42.308 0.00 0.00 0.00 4.51
352 353 6.107343 GGAGAACACTTAAATCAGACTACCC 58.893 44.000 0.00 0.00 0.00 3.69
353 354 5.805994 CGGAGAACACTTAAATCAGACTACC 59.194 44.000 0.00 0.00 0.00 3.18
354 355 6.618811 TCGGAGAACACTTAAATCAGACTAC 58.381 40.000 0.00 0.00 0.00 2.73
355 356 6.127703 CCTCGGAGAACACTTAAATCAGACTA 60.128 42.308 6.58 0.00 34.09 2.59
356 357 5.336849 CCTCGGAGAACACTTAAATCAGACT 60.337 44.000 6.58 0.00 34.09 3.24
357 358 4.865365 CCTCGGAGAACACTTAAATCAGAC 59.135 45.833 6.58 0.00 34.09 3.51
358 359 4.770531 TCCTCGGAGAACACTTAAATCAGA 59.229 41.667 6.58 0.00 34.09 3.27
359 360 5.073311 TCCTCGGAGAACACTTAAATCAG 57.927 43.478 6.58 0.00 34.09 2.90
360 361 4.770531 TCTCCTCGGAGAACACTTAAATCA 59.229 41.667 13.10 0.00 46.89 2.57
361 362 5.326200 TCTCCTCGGAGAACACTTAAATC 57.674 43.478 13.10 0.00 46.89 2.17
373 374 2.685897 CTCTAAACCTGTCTCCTCGGAG 59.314 54.545 6.63 6.63 43.21 4.63
374 375 2.307980 TCTCTAAACCTGTCTCCTCGGA 59.692 50.000 0.00 0.00 0.00 4.55
375 376 2.724454 TCTCTAAACCTGTCTCCTCGG 58.276 52.381 0.00 0.00 0.00 4.63
376 377 3.490078 GCATCTCTAAACCTGTCTCCTCG 60.490 52.174 0.00 0.00 0.00 4.63
377 378 3.704061 AGCATCTCTAAACCTGTCTCCTC 59.296 47.826 0.00 0.00 0.00 3.71
378 379 3.718723 AGCATCTCTAAACCTGTCTCCT 58.281 45.455 0.00 0.00 0.00 3.69
379 380 4.479786 AAGCATCTCTAAACCTGTCTCC 57.520 45.455 0.00 0.00 0.00 3.71
380 381 7.604545 ACTTTAAAGCATCTCTAAACCTGTCTC 59.395 37.037 15.24 0.00 0.00 3.36
381 382 7.454225 ACTTTAAAGCATCTCTAAACCTGTCT 58.546 34.615 15.24 0.00 0.00 3.41
382 383 7.674471 ACTTTAAAGCATCTCTAAACCTGTC 57.326 36.000 15.24 0.00 0.00 3.51
383 384 9.220767 CTAACTTTAAAGCATCTCTAAACCTGT 57.779 33.333 15.24 0.00 0.00 4.00
384 385 9.220767 ACTAACTTTAAAGCATCTCTAAACCTG 57.779 33.333 15.24 0.00 0.00 4.00
385 386 9.220767 CACTAACTTTAAAGCATCTCTAAACCT 57.779 33.333 15.24 0.00 0.00 3.50
386 387 7.963465 GCACTAACTTTAAAGCATCTCTAAACC 59.037 37.037 15.24 0.00 0.00 3.27
387 388 8.722394 AGCACTAACTTTAAAGCATCTCTAAAC 58.278 33.333 15.24 0.00 0.00 2.01
388 389 8.848474 AGCACTAACTTTAAAGCATCTCTAAA 57.152 30.769 15.24 0.00 0.00 1.85
390 391 9.534565 CATAGCACTAACTTTAAAGCATCTCTA 57.465 33.333 15.24 9.79 0.00 2.43
391 392 7.011857 GCATAGCACTAACTTTAAAGCATCTCT 59.988 37.037 15.24 8.09 0.00 3.10
392 393 7.128976 GCATAGCACTAACTTTAAAGCATCTC 58.871 38.462 15.24 1.14 0.00 2.75
393 394 6.599244 TGCATAGCACTAACTTTAAAGCATCT 59.401 34.615 15.24 6.67 31.71 2.90
394 395 6.785191 TGCATAGCACTAACTTTAAAGCATC 58.215 36.000 15.24 0.00 31.71 3.91
395 396 6.183360 CCTGCATAGCACTAACTTTAAAGCAT 60.183 38.462 15.24 7.19 33.79 3.79
396 397 5.123820 CCTGCATAGCACTAACTTTAAAGCA 59.876 40.000 15.24 2.71 33.79 3.91
397 398 5.123979 ACCTGCATAGCACTAACTTTAAAGC 59.876 40.000 15.24 0.90 33.79 3.51
398 399 6.743575 ACCTGCATAGCACTAACTTTAAAG 57.256 37.500 13.76 13.76 33.79 1.85
399 400 6.712998 TCAACCTGCATAGCACTAACTTTAAA 59.287 34.615 0.00 0.00 33.79 1.52
400 401 6.234920 TCAACCTGCATAGCACTAACTTTAA 58.765 36.000 0.00 0.00 33.79 1.52
401 402 5.800296 TCAACCTGCATAGCACTAACTTTA 58.200 37.500 0.00 0.00 33.79 1.85
402 403 4.651778 TCAACCTGCATAGCACTAACTTT 58.348 39.130 0.00 0.00 33.79 2.66
403 404 4.286297 TCAACCTGCATAGCACTAACTT 57.714 40.909 0.00 0.00 33.79 2.66
404 405 3.981071 TCAACCTGCATAGCACTAACT 57.019 42.857 0.00 0.00 33.79 2.24
405 406 4.191544 TCATCAACCTGCATAGCACTAAC 58.808 43.478 0.00 0.00 33.79 2.34
406 407 4.080919 ACTCATCAACCTGCATAGCACTAA 60.081 41.667 0.00 0.00 33.79 2.24
407 408 3.452264 ACTCATCAACCTGCATAGCACTA 59.548 43.478 0.00 0.00 33.79 2.74
408 409 2.238144 ACTCATCAACCTGCATAGCACT 59.762 45.455 0.00 0.00 33.79 4.40
409 410 2.353889 CACTCATCAACCTGCATAGCAC 59.646 50.000 0.00 0.00 33.79 4.40
410 411 2.236893 TCACTCATCAACCTGCATAGCA 59.763 45.455 0.00 0.00 36.92 3.49
411 412 2.910199 TCACTCATCAACCTGCATAGC 58.090 47.619 0.00 0.00 0.00 2.97
412 413 4.261072 GCATTCACTCATCAACCTGCATAG 60.261 45.833 0.00 0.00 0.00 2.23
413 414 3.628942 GCATTCACTCATCAACCTGCATA 59.371 43.478 0.00 0.00 0.00 3.14
414 415 2.426024 GCATTCACTCATCAACCTGCAT 59.574 45.455 0.00 0.00 0.00 3.96
415 416 1.814394 GCATTCACTCATCAACCTGCA 59.186 47.619 0.00 0.00 0.00 4.41
416 417 1.814394 TGCATTCACTCATCAACCTGC 59.186 47.619 0.00 0.00 0.00 4.85
417 418 4.637091 TGTATGCATTCACTCATCAACCTG 59.363 41.667 3.54 0.00 0.00 4.00
418 419 4.847198 TGTATGCATTCACTCATCAACCT 58.153 39.130 3.54 0.00 0.00 3.50
419 420 5.565592 TTGTATGCATTCACTCATCAACC 57.434 39.130 3.54 0.00 0.00 3.77
420 421 6.788243 TGATTGTATGCATTCACTCATCAAC 58.212 36.000 18.31 2.73 32.17 3.18
421 422 7.393841 TTGATTGTATGCATTCACTCATCAA 57.606 32.000 21.39 20.45 35.51 2.57
422 423 7.252708 GTTTGATTGTATGCATTCACTCATCA 58.747 34.615 21.39 16.89 35.51 3.07
423 424 6.412943 CGTTTGATTGTATGCATTCACTCATC 59.587 38.462 21.39 14.99 35.51 2.92
424 425 6.260377 CGTTTGATTGTATGCATTCACTCAT 58.740 36.000 21.39 7.70 35.51 2.90
425 426 5.391843 CCGTTTGATTGTATGCATTCACTCA 60.392 40.000 18.31 18.31 35.51 3.41
426 427 5.030295 CCGTTTGATTGTATGCATTCACTC 58.970 41.667 14.30 14.30 35.51 3.51
427 428 4.458989 ACCGTTTGATTGTATGCATTCACT 59.541 37.500 3.54 0.00 35.51 3.41
428 429 4.732784 ACCGTTTGATTGTATGCATTCAC 58.267 39.130 3.54 0.00 35.51 3.18
429 430 4.436718 CGACCGTTTGATTGTATGCATTCA 60.437 41.667 3.54 2.29 34.40 2.57
430 431 4.028383 CGACCGTTTGATTGTATGCATTC 58.972 43.478 3.54 0.00 0.00 2.67
431 432 3.730662 GCGACCGTTTGATTGTATGCATT 60.731 43.478 3.54 0.00 0.00 3.56
432 433 2.223249 GCGACCGTTTGATTGTATGCAT 60.223 45.455 3.79 3.79 0.00 3.96
433 434 1.129624 GCGACCGTTTGATTGTATGCA 59.870 47.619 0.00 0.00 0.00 3.96
434 435 1.129624 TGCGACCGTTTGATTGTATGC 59.870 47.619 0.00 0.00 0.00 3.14
435 436 2.475519 GGTGCGACCGTTTGATTGTATG 60.476 50.000 0.00 0.00 0.00 2.39
436 437 1.735571 GGTGCGACCGTTTGATTGTAT 59.264 47.619 0.00 0.00 0.00 2.29
437 438 1.149987 GGTGCGACCGTTTGATTGTA 58.850 50.000 0.00 0.00 0.00 2.41
438 439 1.512156 GGGTGCGACCGTTTGATTGT 61.512 55.000 0.00 0.00 39.83 2.71
439 440 1.209127 GGGTGCGACCGTTTGATTG 59.791 57.895 0.00 0.00 39.83 2.67
440 441 1.228003 TGGGTGCGACCGTTTGATT 60.228 52.632 0.00 0.00 39.83 2.57
441 442 1.671054 CTGGGTGCGACCGTTTGAT 60.671 57.895 0.00 0.00 39.83 2.57
442 443 2.280524 CTGGGTGCGACCGTTTGA 60.281 61.111 0.00 0.00 39.83 2.69
443 444 4.025401 GCTGGGTGCGACCGTTTG 62.025 66.667 0.00 0.00 39.83 2.93
444 445 4.555709 TGCTGGGTGCGACCGTTT 62.556 61.111 0.00 0.00 46.63 3.60
445 446 4.988598 CTGCTGGGTGCGACCGTT 62.989 66.667 0.00 0.00 46.63 4.44
453 454 2.803155 TTAAGGCGAGCTGCTGGGTG 62.803 60.000 7.01 0.00 45.43 4.61
454 455 2.124507 TTTAAGGCGAGCTGCTGGGT 62.125 55.000 7.01 0.00 45.43 4.51
455 456 1.377202 TTTAAGGCGAGCTGCTGGG 60.377 57.895 7.01 0.00 45.43 4.45
456 457 0.674895 AGTTTAAGGCGAGCTGCTGG 60.675 55.000 7.01 7.21 45.43 4.85
457 458 0.723981 GAGTTTAAGGCGAGCTGCTG 59.276 55.000 7.01 0.28 45.43 4.41
458 459 0.737715 CGAGTTTAAGGCGAGCTGCT 60.738 55.000 0.00 0.00 45.43 4.24
459 460 0.736325 TCGAGTTTAAGGCGAGCTGC 60.736 55.000 0.00 0.00 45.38 5.25
466 467 1.005294 TGCGACGTCGAGTTTAAGGC 61.005 55.000 39.74 19.43 43.02 4.35
477 478 1.009389 CACTTCCTTCCTGCGACGTC 61.009 60.000 5.18 5.18 0.00 4.34
498 499 3.400590 GCACGACCACGAACGTCC 61.401 66.667 0.00 0.00 40.76 4.79
502 503 2.935955 CAAGGCACGACCACGAAC 59.064 61.111 0.00 0.00 43.14 3.95
503 504 2.970324 GCAAGGCACGACCACGAA 60.970 61.111 0.00 0.00 43.14 3.85
536 537 1.541588 TCTCATGAGTCGTGTGGTCAG 59.458 52.381 21.92 2.32 0.00 3.51
559 560 2.094906 TGTCGTCCTCTTATTGACCGTG 60.095 50.000 0.00 0.00 0.00 4.94
576 577 2.049228 GAGAGTGGTACGTGTTTGTCG 58.951 52.381 0.00 0.00 0.00 4.35
665 679 1.225376 CGTACAAGACCAAGCGGCAA 61.225 55.000 1.45 0.00 34.57 4.52
666 680 1.666553 CGTACAAGACCAAGCGGCA 60.667 57.895 1.45 0.00 34.57 5.69
667 681 1.623973 GACGTACAAGACCAAGCGGC 61.624 60.000 0.00 0.00 34.57 6.53
669 683 0.782384 GTGACGTACAAGACCAAGCG 59.218 55.000 0.00 0.00 0.00 4.68
670 684 0.782384 CGTGACGTACAAGACCAAGC 59.218 55.000 0.00 0.00 0.00 4.01
740 763 2.971261 CTGAAGCGCGGAAAAGTTAAAC 59.029 45.455 8.83 0.00 0.00 2.01
767 807 5.452636 GGGAAGATTAGACTAGACTTGGCAG 60.453 48.000 0.00 0.00 0.00 4.85
815 1082 7.228108 TGCCCGGTCGTTTATATAGATAGATAG 59.772 40.741 0.00 0.00 0.00 2.08
816 1083 7.012704 GTGCCCGGTCGTTTATATAGATAGATA 59.987 40.741 0.00 0.00 0.00 1.98
817 1084 5.889853 TGCCCGGTCGTTTATATAGATAGAT 59.110 40.000 0.00 0.00 0.00 1.98
818 1085 5.124457 GTGCCCGGTCGTTTATATAGATAGA 59.876 44.000 0.00 0.00 0.00 1.98
859 1412 2.887152 GCTTTGGGACTTTGTGTGAGAT 59.113 45.455 0.00 0.00 0.00 2.75
862 1415 2.136298 TGCTTTGGGACTTTGTGTGA 57.864 45.000 0.00 0.00 0.00 3.58
939 1513 0.536687 TGCTGCTGCTGCTTCTTCTT 60.537 50.000 27.67 0.00 40.48 2.52
942 1516 3.669686 CTGCTGCTGCTGCTTCTT 58.330 55.556 27.67 0.00 40.48 2.52
964 1538 4.085733 CTCCTCTCCTCAACTCTTCTTGA 58.914 47.826 0.00 0.00 0.00 3.02
976 1550 2.969821 TATCAGCTCCTCCTCTCCTC 57.030 55.000 0.00 0.00 0.00 3.71
998 1572 0.258484 TCCCATCATGGACGCCATTT 59.742 50.000 4.75 0.00 42.23 2.32
999 1573 0.179009 CTCCCATCATGGACGCCATT 60.179 55.000 4.75 0.00 42.23 3.16
1066 1640 0.322816 ACTTGGTCCATGCGCTTCAT 60.323 50.000 9.73 0.00 35.31 2.57
1070 1644 2.360350 CCACTTGGTCCATGCGCT 60.360 61.111 9.73 0.00 0.00 5.92
1255 1853 6.302269 AGCAATATAATCAAGAGGAAGTGGG 58.698 40.000 0.00 0.00 0.00 4.61
1486 2108 2.614983 GTGCAGACAGGTAAAAACGGAA 59.385 45.455 0.00 0.00 0.00 4.30
1498 2183 4.331992 CCAAACATCTCATAGTGCAGACAG 59.668 45.833 0.00 0.00 0.00 3.51
1664 3531 2.455557 TCCCCCAATGCAATAGTGTTG 58.544 47.619 0.00 0.00 0.00 3.33
1666 3533 2.244510 TCATCCCCCAATGCAATAGTGT 59.755 45.455 0.00 0.00 0.00 3.55
1688 4035 4.081752 ACAAGAGAGTGAGAAGGCATAGTG 60.082 45.833 0.00 0.00 0.00 2.74
1776 4217 4.793028 GCAAGGCAAGTTGTTAGAAAGGTC 60.793 45.833 4.48 0.00 0.00 3.85
1794 4269 1.448540 ACGCCAATCGAGAGCAAGG 60.449 57.895 5.16 0.00 41.67 3.61
1814 4290 7.106239 GGGGTATGATCAAATATCACTCGATT 58.894 38.462 0.00 0.00 32.73 3.34
1852 4408 9.888878 CATGTCCTTGTCATCATGATTAAATAC 57.111 33.333 5.16 0.68 39.68 1.89
1916 4561 6.127647 ACAATTAATGGTGCATCATCGTCTTT 60.128 34.615 14.06 0.00 0.00 2.52
1930 4575 5.630121 TCTGACAAGGACACAATTAATGGT 58.370 37.500 0.00 0.00 0.00 3.55
1932 4577 8.918658 CAATTTCTGACAAGGACACAATTAATG 58.081 33.333 0.00 0.00 0.00 1.90
1933 4578 8.090214 CCAATTTCTGACAAGGACACAATTAAT 58.910 33.333 0.00 0.00 0.00 1.40
1934 4579 7.432869 CCAATTTCTGACAAGGACACAATTAA 58.567 34.615 0.00 0.00 0.00 1.40
1935 4580 6.516527 GCCAATTTCTGACAAGGACACAATTA 60.517 38.462 0.00 0.00 0.00 1.40
1936 4581 5.739935 GCCAATTTCTGACAAGGACACAATT 60.740 40.000 0.00 0.00 0.00 2.32
2009 4654 4.030216 ACCCCGCCTTGATATTGATTTTT 58.970 39.130 0.00 0.00 0.00 1.94
2010 4655 3.384467 CACCCCGCCTTGATATTGATTTT 59.616 43.478 0.00 0.00 0.00 1.82
2011 4656 2.958355 CACCCCGCCTTGATATTGATTT 59.042 45.455 0.00 0.00 0.00 2.17
2013 4658 1.494721 ACACCCCGCCTTGATATTGAT 59.505 47.619 0.00 0.00 0.00 2.57
2014 4659 0.916086 ACACCCCGCCTTGATATTGA 59.084 50.000 0.00 0.00 0.00 2.57
2015 4660 1.134098 AGACACCCCGCCTTGATATTG 60.134 52.381 0.00 0.00 0.00 1.90
2021 5370 0.251916 TTCATAGACACCCCGCCTTG 59.748 55.000 0.00 0.00 0.00 3.61
2028 5377 7.822822 ACAAGTAAACATACTTCATAGACACCC 59.177 37.037 0.00 0.00 38.14 4.61
2058 5407 8.897752 AGTCTGATTTTTAGCCTTGATATTGAC 58.102 33.333 0.00 0.00 0.00 3.18
2063 5412 7.064609 CGACAAGTCTGATTTTTAGCCTTGATA 59.935 37.037 3.21 0.00 35.38 2.15
2084 5440 2.852449 TGCCAATTTACCAGACGACAA 58.148 42.857 0.00 0.00 0.00 3.18
2116 5472 3.823304 GGGGAGCAATATGTCATTCCTTC 59.177 47.826 0.00 0.00 0.00 3.46
2117 5473 3.205056 TGGGGAGCAATATGTCATTCCTT 59.795 43.478 0.00 0.00 0.00 3.36
2118 5474 2.785269 TGGGGAGCAATATGTCATTCCT 59.215 45.455 0.00 0.00 0.00 3.36
2119 5475 2.887152 GTGGGGAGCAATATGTCATTCC 59.113 50.000 0.00 0.00 0.00 3.01
2120 5476 3.554934 TGTGGGGAGCAATATGTCATTC 58.445 45.455 0.00 0.00 0.00 2.67
2121 5477 3.668141 TGTGGGGAGCAATATGTCATT 57.332 42.857 0.00 0.00 0.00 2.57
2122 5478 3.668141 TTGTGGGGAGCAATATGTCAT 57.332 42.857 0.00 0.00 0.00 3.06
2123 5479 3.448093 TTTGTGGGGAGCAATATGTCA 57.552 42.857 0.00 0.00 0.00 3.58
2124 5480 4.799564 TTTTTGTGGGGAGCAATATGTC 57.200 40.909 0.00 0.00 0.00 3.06
2142 5498 8.773645 GCAATATCTGTTTAGCCTTTTGTTTTT 58.226 29.630 0.00 0.00 0.00 1.94
2147 5503 8.213518 TCTAGCAATATCTGTTTAGCCTTTTG 57.786 34.615 0.00 0.00 0.00 2.44
2148 5504 8.267894 TCTCTAGCAATATCTGTTTAGCCTTTT 58.732 33.333 0.00 0.00 0.00 2.27
2152 5508 5.929415 GGTCTCTAGCAATATCTGTTTAGCC 59.071 44.000 0.00 0.00 0.00 3.93
2176 5532 8.253810 TCAAATTCATCTGACCTGTAACTCTAG 58.746 37.037 0.00 0.00 0.00 2.43
2180 5536 6.533730 TGTCAAATTCATCTGACCTGTAACT 58.466 36.000 5.72 0.00 41.07 2.24
2181 5537 6.621596 GCTGTCAAATTCATCTGACCTGTAAC 60.622 42.308 5.72 0.00 41.07 2.50
2182 5538 5.412594 GCTGTCAAATTCATCTGACCTGTAA 59.587 40.000 5.72 0.00 41.07 2.41
2183 5539 4.937620 GCTGTCAAATTCATCTGACCTGTA 59.062 41.667 5.72 0.00 41.07 2.74
2184 5540 3.755378 GCTGTCAAATTCATCTGACCTGT 59.245 43.478 5.72 0.00 41.07 4.00
2185 5541 4.008330 AGCTGTCAAATTCATCTGACCTG 58.992 43.478 5.72 1.36 41.07 4.00
2186 5542 4.260170 GAGCTGTCAAATTCATCTGACCT 58.740 43.478 0.00 0.00 41.07 3.85
2212 5568 5.657302 ACTAGAACCGTCCTATTCTTGTGAT 59.343 40.000 0.00 0.00 38.77 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.