Multiple sequence alignment - TraesCS6D01G060700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G060700 chr6D 100.000 4127 0 0 1 4127 28412463 28408337 0.000000e+00 7622
1 TraesCS6D01G060700 chr6D 78.811 1430 232 45 1000 2400 27840303 27841690 0.000000e+00 896
2 TraesCS6D01G060700 chr6D 78.374 1304 220 44 1039 2302 28305134 28303853 0.000000e+00 789
3 TraesCS6D01G060700 chr6D 74.801 1508 257 75 957 2391 27860039 27861496 2.150000e-157 566
4 TraesCS6D01G060700 chr6D 85.818 275 37 2 2129 2401 28303853 28303579 1.450000e-74 291
5 TraesCS6D01G060700 chr6D 72.709 971 203 42 1009 1933 27845327 27846281 6.800000e-68 268
6 TraesCS6D01G060700 chr6D 83.843 229 34 2 2483 2709 27792135 27791908 8.990000e-52 215
7 TraesCS6D01G060700 chr6D 78.075 187 30 9 2073 2255 29147067 29146888 1.570000e-19 108
8 TraesCS6D01G060700 chrUn 92.413 1977 103 23 791 2745 286652032 286650081 0.000000e+00 2776
9 TraesCS6D01G060700 chrUn 90.681 558 47 4 2758 3313 286649974 286649420 0.000000e+00 737
10 TraesCS6D01G060700 chrUn 84.857 700 65 25 107 781 80231162 80230479 0.000000e+00 667
11 TraesCS6D01G060700 chrUn 84.303 567 57 15 3310 3856 276116896 276117450 3.650000e-145 525
12 TraesCS6D01G060700 chrUn 84.303 567 57 15 3310 3856 276162051 276162605 3.650000e-145 525
13 TraesCS6D01G060700 chrUn 98.462 65 1 0 1 65 80231220 80231156 9.370000e-22 115
14 TraesCS6D01G060700 chr6A 92.266 1849 102 24 950 2764 29495894 29497735 0.000000e+00 2584
15 TraesCS6D01G060700 chr6A 88.784 954 83 15 2758 3698 29497897 29498839 0.000000e+00 1147
16 TraesCS6D01G060700 chr6A 79.756 1393 227 33 1039 2401 30041686 30040319 0.000000e+00 959
17 TraesCS6D01G060700 chr6A 79.388 490 64 19 1018 1490 29969430 29968961 1.110000e-80 311
18 TraesCS6D01G060700 chr6A 78.960 404 63 15 3062 3449 30200149 30199752 5.290000e-64 255
19 TraesCS6D01G060700 chr6A 90.683 161 9 2 756 910 29495627 29495787 4.180000e-50 209
20 TraesCS6D01G060700 chr6A 81.319 273 33 14 1 266 29494880 29495141 5.410000e-49 206
21 TraesCS6D01G060700 chr6B 79.585 1396 231 32 1035 2400 51577663 51576292 0.000000e+00 950
22 TraesCS6D01G060700 chr6B 79.539 1432 215 49 1001 2400 51611967 51613352 0.000000e+00 950
23 TraesCS6D01G060700 chr6B 77.872 1297 233 36 1039 2302 52361262 52359987 0.000000e+00 756
24 TraesCS6D01G060700 chr6B 77.863 1301 222 42 1044 2302 51912421 51913697 0.000000e+00 747
25 TraesCS6D01G060700 chr6B 88.364 275 29 3 2129 2401 52359987 52359714 1.110000e-85 327
26 TraesCS6D01G060700 chr6B 72.622 946 190 50 1039 1933 51732115 51733042 8.860000e-62 248
27 TraesCS6D01G060700 chr6B 78.877 374 73 3 1041 1408 63214054 63214427 8.860000e-62 248
28 TraesCS6D01G060700 chr6B 78.877 374 73 3 1041 1408 63245076 63245449 8.860000e-62 248
29 TraesCS6D01G060700 chr6B 82.707 266 42 3 2483 2745 51576173 51575909 2.480000e-57 233
30 TraesCS6D01G060700 chr6B 72.193 935 194 43 1039 1928 60583808 60584721 4.150000e-55 226
31 TraesCS6D01G060700 chr6B 87.200 125 15 1 2277 2401 426739492 426739369 1.550000e-29 141
32 TraesCS6D01G060700 chr6B 92.308 91 5 2 2403 2492 426739302 426739213 1.200000e-25 128
33 TraesCS6D01G060700 chr4A 87.805 123 13 2 2274 2395 720042522 720042643 4.300000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G060700 chr6D 28408337 28412463 4126 True 7622.0 7622 100.0000 1 4127 1 chr6D.!!$R2 4126
1 TraesCS6D01G060700 chr6D 27840303 27846281 5978 False 582.0 896 75.7600 1000 2400 2 chr6D.!!$F2 1400
2 TraesCS6D01G060700 chr6D 27860039 27861496 1457 False 566.0 566 74.8010 957 2391 1 chr6D.!!$F1 1434
3 TraesCS6D01G060700 chr6D 28303579 28305134 1555 True 540.0 789 82.0960 1039 2401 2 chr6D.!!$R4 1362
4 TraesCS6D01G060700 chrUn 286649420 286652032 2612 True 1756.5 2776 91.5470 791 3313 2 chrUn.!!$R2 2522
5 TraesCS6D01G060700 chrUn 276116896 276117450 554 False 525.0 525 84.3030 3310 3856 1 chrUn.!!$F1 546
6 TraesCS6D01G060700 chrUn 276162051 276162605 554 False 525.0 525 84.3030 3310 3856 1 chrUn.!!$F2 546
7 TraesCS6D01G060700 chrUn 80230479 80231220 741 True 391.0 667 91.6595 1 781 2 chrUn.!!$R1 780
8 TraesCS6D01G060700 chr6A 29494880 29498839 3959 False 1036.5 2584 88.2630 1 3698 4 chr6A.!!$F1 3697
9 TraesCS6D01G060700 chr6A 30040319 30041686 1367 True 959.0 959 79.7560 1039 2401 1 chr6A.!!$R2 1362
10 TraesCS6D01G060700 chr6B 51611967 51613352 1385 False 950.0 950 79.5390 1001 2400 1 chr6B.!!$F1 1399
11 TraesCS6D01G060700 chr6B 51912421 51913697 1276 False 747.0 747 77.8630 1044 2302 1 chr6B.!!$F3 1258
12 TraesCS6D01G060700 chr6B 51575909 51577663 1754 True 591.5 950 81.1460 1035 2745 2 chr6B.!!$R1 1710
13 TraesCS6D01G060700 chr6B 52359714 52361262 1548 True 541.5 756 83.1180 1039 2401 2 chr6B.!!$R2 1362
14 TraesCS6D01G060700 chr6B 51732115 51733042 927 False 248.0 248 72.6220 1039 1933 1 chr6B.!!$F2 894
15 TraesCS6D01G060700 chr6B 60583808 60584721 913 False 226.0 226 72.1930 1039 1928 1 chr6B.!!$F4 889

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 1054 0.321122 CAGTGTCTCTCCTGTTGGCC 60.321 60.0 0.0 0.0 0.00 5.36 F
1425 1655 0.652592 GCCACAAGCACTACATAGCG 59.347 55.0 0.0 0.0 42.97 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2472 3247 1.070758 GCCATCACATCGTCTGGGTAT 59.929 52.381 0.0 0.0 0.0 2.73 R
3180 4134 0.179089 CTGATCTCCAGGTGAAGCCG 60.179 60.000 0.0 0.0 43.7 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 8.857098 ACTAGATTGTACTAACACTGAAGTTGA 58.143 33.333 0.00 0.00 34.61 3.18
75 76 7.948278 AGATTGTACTAACACTGAAGTTGAC 57.052 36.000 0.00 0.00 34.61 3.18
76 77 7.497595 AGATTGTACTAACACTGAAGTTGACA 58.502 34.615 0.00 0.00 34.61 3.58
77 78 6.897259 TTGTACTAACACTGAAGTTGACAC 57.103 37.500 0.00 0.00 34.61 3.67
78 79 5.968254 TGTACTAACACTGAAGTTGACACA 58.032 37.500 0.00 0.00 33.07 3.72
79 80 6.399743 TGTACTAACACTGAAGTTGACACAA 58.600 36.000 0.00 0.00 33.07 3.33
80 81 6.874664 TGTACTAACACTGAAGTTGACACAAA 59.125 34.615 0.00 0.00 33.07 2.83
81 82 7.551262 TGTACTAACACTGAAGTTGACACAAAT 59.449 33.333 0.00 0.00 33.07 2.32
82 83 9.037737 GTACTAACACTGAAGTTGACACAAATA 57.962 33.333 0.00 0.00 33.07 1.40
83 84 8.500753 ACTAACACTGAAGTTGACACAAATAA 57.499 30.769 0.00 0.00 33.07 1.40
84 85 8.395633 ACTAACACTGAAGTTGACACAAATAAC 58.604 33.333 0.00 0.00 33.07 1.89
85 86 6.751514 ACACTGAAGTTGACACAAATAACA 57.248 33.333 0.00 0.00 0.00 2.41
86 87 7.151999 ACACTGAAGTTGACACAAATAACAA 57.848 32.000 0.00 0.00 0.00 2.83
87 88 7.027161 ACACTGAAGTTGACACAAATAACAAC 58.973 34.615 0.00 0.00 41.61 3.32
88 89 6.472163 CACTGAAGTTGACACAAATAACAACC 59.528 38.462 0.00 0.00 42.05 3.77
89 90 6.151985 ACTGAAGTTGACACAAATAACAACCA 59.848 34.615 0.00 0.00 42.05 3.67
90 91 6.326375 TGAAGTTGACACAAATAACAACCAC 58.674 36.000 0.00 0.00 42.05 4.16
91 92 5.906113 AGTTGACACAAATAACAACCACA 57.094 34.783 0.00 0.00 42.05 4.17
92 93 5.646606 AGTTGACACAAATAACAACCACAC 58.353 37.500 0.00 0.00 42.05 3.82
93 94 5.184096 AGTTGACACAAATAACAACCACACA 59.816 36.000 0.00 0.00 42.05 3.72
94 95 5.644977 TGACACAAATAACAACCACACAA 57.355 34.783 0.00 0.00 0.00 3.33
95 96 6.214191 TGACACAAATAACAACCACACAAT 57.786 33.333 0.00 0.00 0.00 2.71
96 97 6.038985 TGACACAAATAACAACCACACAATG 58.961 36.000 0.00 0.00 0.00 2.82
97 98 4.808364 ACACAAATAACAACCACACAATGC 59.192 37.500 0.00 0.00 0.00 3.56
98 99 4.807834 CACAAATAACAACCACACAATGCA 59.192 37.500 0.00 0.00 0.00 3.96
99 100 5.466058 CACAAATAACAACCACACAATGCAT 59.534 36.000 0.00 0.00 0.00 3.96
100 101 6.018098 CACAAATAACAACCACACAATGCATT 60.018 34.615 5.99 5.99 0.00 3.56
101 102 7.170489 CACAAATAACAACCACACAATGCATTA 59.830 33.333 12.53 0.00 0.00 1.90
102 103 7.384660 ACAAATAACAACCACACAATGCATTAG 59.615 33.333 12.53 10.40 0.00 1.73
103 104 3.940209 ACAACCACACAATGCATTAGG 57.060 42.857 12.53 13.68 0.00 2.69
104 105 2.029110 ACAACCACACAATGCATTAGGC 60.029 45.455 12.53 0.00 45.13 3.93
105 106 1.185315 ACCACACAATGCATTAGGCC 58.815 50.000 12.53 0.00 43.89 5.19
131 170 4.261801 AGCAGCCATACAAAAATACGAGT 58.738 39.130 0.00 0.00 0.00 4.18
132 171 5.424757 AGCAGCCATACAAAAATACGAGTA 58.575 37.500 0.00 0.00 0.00 2.59
264 314 3.697982 CAGTTATGCGTGATACGGTACA 58.302 45.455 3.41 0.00 42.82 2.90
265 315 4.106909 CAGTTATGCGTGATACGGTACAA 58.893 43.478 3.41 0.00 42.82 2.41
268 323 5.813672 AGTTATGCGTGATACGGTACAATTT 59.186 36.000 3.41 0.00 42.82 1.82
306 361 5.947519 CGTGATACGGTACAAATTAACAACG 59.052 40.000 0.00 0.00 38.08 4.10
326 381 2.030363 CGAGCAGAGTGAGAACTGAAGT 60.030 50.000 0.00 0.00 36.38 3.01
327 382 3.189495 CGAGCAGAGTGAGAACTGAAGTA 59.811 47.826 0.00 0.00 36.38 2.24
346 401 0.458669 ATTACACTACCCGGCAGTCG 59.541 55.000 0.00 0.00 38.88 4.18
347 402 0.608856 TTACACTACCCGGCAGTCGA 60.609 55.000 0.00 0.00 42.43 4.20
348 403 0.394762 TACACTACCCGGCAGTCGAT 60.395 55.000 0.00 0.00 42.43 3.59
349 404 1.065928 CACTACCCGGCAGTCGATC 59.934 63.158 0.00 0.00 42.43 3.69
350 405 1.379443 ACTACCCGGCAGTCGATCA 60.379 57.895 0.00 0.00 42.43 2.92
351 406 0.968901 ACTACCCGGCAGTCGATCAA 60.969 55.000 0.00 0.00 42.43 2.57
355 410 1.084370 CCCGGCAGTCGATCAAAGAC 61.084 60.000 0.00 0.00 42.43 3.01
358 413 1.272781 GGCAGTCGATCAAAGACTCG 58.727 55.000 0.00 0.00 46.16 4.18
362 417 2.366533 AGTCGATCAAAGACTCGGCTA 58.633 47.619 0.00 0.00 46.99 3.93
363 418 2.952978 AGTCGATCAAAGACTCGGCTAT 59.047 45.455 0.00 0.00 46.99 2.97
371 426 2.445682 AGACTCGGCTATGGAGAAGT 57.554 50.000 0.00 0.00 35.49 3.01
402 464 4.262617 GACCTTAGTTTAGGAGGCAAAGG 58.737 47.826 0.00 0.00 38.73 3.11
477 548 4.521639 TCGTTATCTATCGGCAGTACCAAT 59.478 41.667 0.00 0.00 39.03 3.16
487 558 5.413499 TCGGCAGTACCAATCTACTAAAAC 58.587 41.667 0.00 0.00 39.03 2.43
494 565 7.819900 CAGTACCAATCTACTAAAACTGAGCTT 59.180 37.037 0.00 0.00 36.13 3.74
497 568 6.431234 ACCAATCTACTAAAACTGAGCTTTGG 59.569 38.462 3.16 3.16 35.87 3.28
532 603 8.352942 GCAAAATATTAGAAATCGAATGAGGGT 58.647 33.333 0.00 0.00 0.00 4.34
559 630 8.876275 TTTTTCTTCAGAAATGAGAATGTTGG 57.124 30.769 2.83 0.00 42.83 3.77
560 631 6.579666 TTCTTCAGAAATGAGAATGTTGGG 57.420 37.500 0.00 0.00 0.00 4.12
564 635 2.749621 AGAAATGAGAATGTTGGGACGC 59.250 45.455 0.00 0.00 0.00 5.19
569 640 1.880027 GAGAATGTTGGGACGCAAAGT 59.120 47.619 6.50 0.00 0.00 2.66
578 649 2.945984 ACGCAAAGTCATGCCGTG 59.054 55.556 0.00 0.00 43.47 4.94
586 657 2.225068 AGTCATGCCGTGTATGCTAC 57.775 50.000 0.00 0.00 0.00 3.58
597 668 3.592898 TGTATGCTACACACTCCACTG 57.407 47.619 0.00 0.00 32.89 3.66
616 692 5.596772 CCACTGAAAGAAAGGAAACCCTAAA 59.403 40.000 0.00 0.00 37.43 1.85
622 698 2.304221 AAGGAAACCCTAAAGTGGCC 57.696 50.000 0.00 0.00 32.65 5.36
623 699 1.154430 AGGAAACCCTAAAGTGGCCA 58.846 50.000 0.00 0.00 30.72 5.36
624 700 1.075536 AGGAAACCCTAAAGTGGCCAG 59.924 52.381 5.11 0.00 30.72 4.85
628 704 3.322191 AACCCTAAAGTGGCCAGAAAA 57.678 42.857 5.11 0.00 0.00 2.29
653 729 1.396648 CAATTGCGATTGACGGCACTA 59.603 47.619 20.33 0.00 44.37 2.74
654 730 1.006832 ATTGCGATTGACGGCACTAC 58.993 50.000 0.00 0.00 42.83 2.73
668 744 5.109903 ACGGCACTACAACTCTGATTTATC 58.890 41.667 0.00 0.00 0.00 1.75
680 756 8.441608 CAACTCTGATTTATCGATGAATGATCC 58.558 37.037 19.02 6.31 0.00 3.36
685 761 6.204495 TGATTTATCGATGAATGATCCGCAAA 59.796 34.615 19.02 2.42 0.00 3.68
686 762 3.885484 ATCGATGAATGATCCGCAAAC 57.115 42.857 0.00 0.00 0.00 2.93
687 763 2.626840 TCGATGAATGATCCGCAAACA 58.373 42.857 0.00 0.00 0.00 2.83
690 766 4.996758 TCGATGAATGATCCGCAAACATAT 59.003 37.500 0.00 0.00 0.00 1.78
691 767 5.120674 TCGATGAATGATCCGCAAACATATC 59.879 40.000 0.00 0.00 0.00 1.63
692 768 5.121298 CGATGAATGATCCGCAAACATATCT 59.879 40.000 0.00 0.00 0.00 1.98
694 770 6.304356 TGAATGATCCGCAAACATATCTTC 57.696 37.500 0.00 0.00 0.00 2.87
695 771 5.821995 TGAATGATCCGCAAACATATCTTCA 59.178 36.000 0.00 0.00 0.00 3.02
738 824 9.793259 TTCATATATATCCCAAAAAGGTCAGAC 57.207 33.333 0.00 0.00 34.66 3.51
740 826 9.573166 CATATATATCCCAAAAAGGTCAGACAA 57.427 33.333 2.17 0.00 34.66 3.18
747 833 4.744631 CCAAAAAGGTCAGACAATTTTCCG 59.255 41.667 13.36 9.33 0.00 4.30
775 890 4.039124 CACAAAGGTTAAAGCAAGTGGGAT 59.961 41.667 0.00 0.00 0.00 3.85
783 898 6.127980 GGTTAAAGCAAGTGGGATCTTAGAAC 60.128 42.308 0.00 0.00 0.00 3.01
810 932 9.436957 TGAAAAGGCACACAAAAAGTAAAAATA 57.563 25.926 0.00 0.00 0.00 1.40
910 1033 6.828785 TCTTCTTCCAGTGGGCTTAATTAATC 59.171 38.462 9.92 0.00 0.00 1.75
911 1034 6.073447 TCTTCCAGTGGGCTTAATTAATCA 57.927 37.500 9.92 0.00 0.00 2.57
916 1039 5.163622 CCAGTGGGCTTAATTAATCACAGTG 60.164 44.000 23.41 23.41 36.45 3.66
921 1044 6.116126 GGGCTTAATTAATCACAGTGTCTCT 58.884 40.000 0.00 0.00 0.00 3.10
923 1046 6.258947 GGCTTAATTAATCACAGTGTCTCTCC 59.741 42.308 0.00 0.00 0.00 3.71
924 1047 7.044798 GCTTAATTAATCACAGTGTCTCTCCT 58.955 38.462 0.00 0.00 0.00 3.69
925 1048 7.010923 GCTTAATTAATCACAGTGTCTCTCCTG 59.989 40.741 0.00 0.00 34.82 3.86
926 1049 6.365970 AATTAATCACAGTGTCTCTCCTGT 57.634 37.500 0.00 0.00 42.47 4.00
928 1051 3.674528 ATCACAGTGTCTCTCCTGTTG 57.325 47.619 0.00 0.00 39.83 3.33
930 1053 0.394565 ACAGTGTCTCTCCTGTTGGC 59.605 55.000 0.00 0.00 38.76 4.52
931 1054 0.321122 CAGTGTCTCTCCTGTTGGCC 60.321 60.000 0.00 0.00 0.00 5.36
932 1055 1.003233 GTGTCTCTCCTGTTGGCCC 60.003 63.158 0.00 0.00 0.00 5.80
1005 1210 2.515523 GCCGCATGAGCCATGAGT 60.516 61.111 16.46 0.00 43.81 3.41
1072 1280 2.050351 ACGACGACAACCTGCTCG 60.050 61.111 0.00 0.00 35.96 5.03
1184 1392 4.082523 CTTCTCCCGCCGCTTCCA 62.083 66.667 0.00 0.00 0.00 3.53
1425 1655 0.652592 GCCACAAGCACTACATAGCG 59.347 55.000 0.00 0.00 42.97 4.26
1490 1729 3.567797 GTTCCGCTCATCTGCCGC 61.568 66.667 0.00 0.00 0.00 6.53
1761 2066 2.319136 TACGGATGCCAGCGTATTTT 57.681 45.000 0.00 0.00 0.00 1.82
1968 2309 3.806949 ATACAAGGGTTTGCTGAGGAA 57.193 42.857 0.00 0.00 37.85 3.36
2008 2355 1.077993 AGACCACTACCAGCCTCTTCT 59.922 52.381 0.00 0.00 0.00 2.85
2106 2453 6.102897 AGTGTCTATGGTGCAGGTAATATC 57.897 41.667 0.00 0.00 0.00 1.63
2145 2663 5.106197 CCCGGTATAACAAAACCAAGTTACC 60.106 44.000 0.00 0.00 35.35 2.85
2348 3051 8.867112 ATCTGCAAAAATATTAGCTTGTGATG 57.133 30.769 0.00 0.00 0.00 3.07
2402 3108 6.227298 TCTGTGGCCAAGTTGAAAATTTTA 57.773 33.333 7.24 0.00 0.00 1.52
2406 3112 6.261826 TGTGGCCAAGTTGAAAATTTTAATGG 59.738 34.615 7.24 8.98 0.00 3.16
2472 3247 8.585018 TGAGATACATGAACAGTTCTGTTTCTA 58.415 33.333 23.10 15.50 33.75 2.10
2604 3388 5.146010 AGTCAGAGCTAGGAAAGTTTCTG 57.854 43.478 15.05 4.07 38.94 3.02
2745 3529 8.662781 TGTATGCATAGTTAGAAGCTTAAAGG 57.337 34.615 6.67 0.00 0.00 3.11
2746 3530 6.625873 ATGCATAGTTAGAAGCTTAAAGGC 57.374 37.500 0.00 0.27 0.00 4.35
2747 3531 5.745227 TGCATAGTTAGAAGCTTAAAGGCT 58.255 37.500 0.00 0.00 45.30 4.58
2748 3532 6.884832 TGCATAGTTAGAAGCTTAAAGGCTA 58.115 36.000 0.00 0.00 42.24 3.93
2750 3534 8.647796 TGCATAGTTAGAAGCTTAAAGGCTATA 58.352 33.333 0.00 0.00 42.24 1.31
2751 3535 9.660180 GCATAGTTAGAAGCTTAAAGGCTATAT 57.340 33.333 0.00 0.00 42.24 0.86
2828 3779 7.670364 TCACTTGTTTTACTGAGATCAGATGA 58.330 34.615 16.52 0.00 46.59 2.92
2829 3780 8.316946 TCACTTGTTTTACTGAGATCAGATGAT 58.683 33.333 16.52 0.00 46.59 2.45
2905 3856 6.423905 GCACTACAAATTGACTGTCTTCTACA 59.576 38.462 9.51 0.00 36.42 2.74
2916 3867 5.978814 ACTGTCTTCTACACTTTCTGTTGT 58.021 37.500 0.00 0.00 33.91 3.32
2923 3874 9.477484 TCTTCTACACTTTCTGTTGTTATTCTC 57.523 33.333 0.00 0.00 33.91 2.87
2981 3932 7.922278 TGAGATGATTCAACTTTGGAGTTTTTG 59.078 33.333 0.00 0.00 43.48 2.44
2989 3940 6.319405 TCAACTTTGGAGTTTTTGGTAGGTAC 59.681 38.462 0.00 0.00 43.48 3.34
2994 3945 4.998672 TGGAGTTTTTGGTAGGTACGATTG 59.001 41.667 0.00 0.00 0.00 2.67
3018 3969 5.677091 GCCACAATGGTTAAGCTGATAGTTG 60.677 44.000 6.19 4.62 40.46 3.16
3032 3983 8.969260 AGCTGATAGTTGATGTTTGAATCATA 57.031 30.769 0.00 0.00 36.48 2.15
3033 3984 9.399797 AGCTGATAGTTGATGTTTGAATCATAA 57.600 29.630 0.00 0.00 36.48 1.90
3129 4081 5.069648 TGATTGCTCCACAGGTATCTAGAAG 59.930 44.000 0.00 0.00 0.00 2.85
3153 4106 2.401766 CCCGGTTGCTGAGATGCAC 61.402 63.158 0.00 0.00 43.20 4.57
3160 4113 0.745486 TGCTGAGATGCACGAATGGG 60.745 55.000 0.00 0.00 38.12 4.00
3163 4116 1.451927 GAGATGCACGAATGGGCCA 60.452 57.895 9.61 9.61 0.00 5.36
3180 4134 2.353109 GGCCATTTGCTGAAGGTTCTTC 60.353 50.000 0.00 1.06 40.92 2.87
3271 4234 8.366359 AGGAGTTAATCATTTAGTTTGCCAAT 57.634 30.769 0.00 0.00 0.00 3.16
3274 4243 9.860898 GAGTTAATCATTTAGTTTGCCAATTCT 57.139 29.630 0.00 0.00 0.00 2.40
3360 4329 6.479001 TGCTTCGATTAGTTAATACTTGCCTC 59.521 38.462 0.00 0.00 35.78 4.70
3361 4330 6.702282 GCTTCGATTAGTTAATACTTGCCTCT 59.298 38.462 0.00 0.00 35.78 3.69
3373 4342 3.299503 ACTTGCCTCTTGGTTCATTTGT 58.700 40.909 0.00 0.00 35.27 2.83
3386 4355 5.055812 GGTTCATTTGTCATTTGCTTTCCA 58.944 37.500 0.00 0.00 0.00 3.53
3435 4405 7.434307 CCTGCTTAATGATCTTTGCTTACATTG 59.566 37.037 4.17 0.00 33.99 2.82
3443 4413 5.422666 TCTTTGCTTACATTGTGTGTCTG 57.577 39.130 0.00 0.00 42.29 3.51
3444 4414 4.881273 TCTTTGCTTACATTGTGTGTCTGT 59.119 37.500 0.00 0.00 42.29 3.41
3445 4415 4.550577 TTGCTTACATTGTGTGTCTGTG 57.449 40.909 0.00 0.00 42.29 3.66
3447 4417 3.312146 TGCTTACATTGTGTGTCTGTGTG 59.688 43.478 0.00 0.00 42.29 3.82
3448 4418 3.849645 GCTTACATTGTGTGTCTGTGTGC 60.850 47.826 0.00 0.00 42.29 4.57
3449 4419 1.748950 ACATTGTGTGTCTGTGTGCA 58.251 45.000 0.00 0.00 35.77 4.57
3456 4426 1.151668 GTGTCTGTGTGCATCTCACC 58.848 55.000 3.73 0.00 45.03 4.02
3463 4433 1.461127 GTGTGCATCTCACCGTTTCTC 59.539 52.381 0.00 0.00 45.03 2.87
3473 4443 6.780706 TCTCACCGTTTCTCTTTTATTGTC 57.219 37.500 0.00 0.00 0.00 3.18
3565 4555 3.728385 AATAAGTGCTGCTTCCCTTCT 57.272 42.857 0.00 0.00 38.57 2.85
3572 4562 2.224843 TGCTGCTTCCCTTCTTGATCAA 60.225 45.455 8.12 8.12 0.00 2.57
3576 4566 2.159462 GCTTCCCTTCTTGATCAAAGCG 60.159 50.000 9.88 0.00 35.69 4.68
3578 4568 3.634397 TCCCTTCTTGATCAAAGCGAT 57.366 42.857 9.88 0.00 35.69 4.58
3617 4613 6.635030 AAGTTTGATTTACCAGGTGTCTTC 57.365 37.500 0.76 0.00 0.00 2.87
3670 4682 8.239998 AGCTAGAACAGAAATAAGAAAATGCAC 58.760 33.333 0.00 0.00 0.00 4.57
3674 4686 8.632679 AGAACAGAAATAAGAAAATGCACTTCA 58.367 29.630 11.79 0.00 0.00 3.02
3679 4691 9.985730 AGAAATAAGAAAATGCACTTCATTCAA 57.014 25.926 11.79 0.00 44.23 2.69
3684 4696 8.530269 AAGAAAATGCACTTCATTCAATCTTC 57.470 30.769 11.79 0.00 44.23 2.87
3690 4702 5.824624 TGCACTTCATTCAATCTTCCTATCC 59.175 40.000 0.00 0.00 0.00 2.59
3693 4705 7.172361 GCACTTCATTCAATCTTCCTATCCTAC 59.828 40.741 0.00 0.00 0.00 3.18
3700 4712 6.385443 TCAATCTTCCTATCCTACCAGTGAT 58.615 40.000 0.00 0.00 0.00 3.06
3705 4717 9.707957 ATCTTCCTATCCTACCAGTGATTATAG 57.292 37.037 0.00 0.00 0.00 1.31
3717 4729 8.910351 ACCAGTGATTATAGAAAATAAGAGCC 57.090 34.615 0.00 0.00 0.00 4.70
3755 4786 8.448816 TCAGTCTTCCTATCCTATCAGTATCAA 58.551 37.037 0.00 0.00 0.00 2.57
3762 4793 7.836685 TCCTATCCTATCAGTATCAATGGAGAC 59.163 40.741 0.00 0.00 35.48 3.36
3763 4802 7.838696 CCTATCCTATCAGTATCAATGGAGACT 59.161 40.741 0.00 0.00 46.09 3.24
3774 4813 4.511527 TCAATGGAGACTCAGATTTGCTC 58.488 43.478 4.53 0.00 0.00 4.26
3788 4827 5.411977 CAGATTTGCTCAGTGAGAAGTGAAT 59.588 40.000 24.55 10.14 0.00 2.57
3809 4848 7.323656 GTGAATAGTTGTACACTTGCATTTGAC 59.676 37.037 0.00 0.00 36.88 3.18
3810 4849 4.209452 AGTTGTACACTTGCATTTGACG 57.791 40.909 0.00 0.00 27.32 4.35
3825 4869 1.078848 GACGATTCAGGTGCCAGCT 60.079 57.895 0.00 0.00 0.00 4.24
3845 4889 7.010460 GCCAGCTTTAGTTTAGCATTTAATTGG 59.990 37.037 0.00 0.00 41.11 3.16
3863 4907 3.724508 TGGAACAAATTTCACGTGCAT 57.275 38.095 11.67 2.09 31.92 3.96
3864 4908 4.837896 TGGAACAAATTTCACGTGCATA 57.162 36.364 11.67 0.00 31.92 3.14
3865 4909 4.793071 TGGAACAAATTTCACGTGCATAG 58.207 39.130 11.67 4.79 31.92 2.23
3866 4910 4.517075 TGGAACAAATTTCACGTGCATAGA 59.483 37.500 11.67 0.00 31.92 1.98
3873 4917 4.944962 TTTCACGTGCATAGAATGGAAG 57.055 40.909 11.67 0.00 36.29 3.46
3879 4923 3.242543 CGTGCATAGAATGGAAGCAAGAC 60.243 47.826 0.00 0.00 36.95 3.01
3882 4926 3.217626 CATAGAATGGAAGCAAGACCCC 58.782 50.000 0.00 0.00 0.00 4.95
3900 4944 2.960129 CCGGTGCGCGGTATTCTC 60.960 66.667 8.83 0.00 0.00 2.87
3901 4945 2.960129 CGGTGCGCGGTATTCTCC 60.960 66.667 8.83 0.00 0.00 3.71
3902 4946 2.185867 GGTGCGCGGTATTCTCCA 59.814 61.111 8.83 0.00 0.00 3.86
3904 4948 0.032952 GGTGCGCGGTATTCTCCATA 59.967 55.000 8.83 0.00 0.00 2.74
3905 4949 1.337823 GGTGCGCGGTATTCTCCATAT 60.338 52.381 8.83 0.00 0.00 1.78
3907 4951 2.921754 GTGCGCGGTATTCTCCATATAC 59.078 50.000 8.83 0.00 0.00 1.47
3908 4952 2.182825 GCGCGGTATTCTCCATATACG 58.817 52.381 8.83 0.00 30.82 3.06
3909 4953 2.182825 CGCGGTATTCTCCATATACGC 58.817 52.381 0.00 0.00 40.46 4.42
3910 4954 2.159421 CGCGGTATTCTCCATATACGCT 60.159 50.000 0.00 0.00 41.12 5.07
3911 4955 3.672511 CGCGGTATTCTCCATATACGCTT 60.673 47.826 0.00 0.00 41.12 4.68
3912 4956 3.858238 GCGGTATTCTCCATATACGCTTC 59.142 47.826 0.00 0.00 40.58 3.86
3913 4957 4.421948 CGGTATTCTCCATATACGCTTCC 58.578 47.826 0.00 0.00 30.82 3.46
3914 4958 4.082408 CGGTATTCTCCATATACGCTTCCA 60.082 45.833 0.00 0.00 30.82 3.53
3916 4960 6.043411 GGTATTCTCCATATACGCTTCCATC 58.957 44.000 0.00 0.00 30.82 3.51
3917 4961 3.850122 TCTCCATATACGCTTCCATCG 57.150 47.619 0.00 0.00 0.00 3.84
3918 4962 2.492088 TCTCCATATACGCTTCCATCGG 59.508 50.000 0.00 0.00 0.00 4.18
3919 4963 2.231478 CTCCATATACGCTTCCATCGGT 59.769 50.000 0.00 0.00 0.00 4.69
3921 4965 3.827876 TCCATATACGCTTCCATCGGTAA 59.172 43.478 0.00 0.00 0.00 2.85
3922 4966 4.464951 TCCATATACGCTTCCATCGGTAAT 59.535 41.667 0.00 0.00 0.00 1.89
3923 4967 5.046878 TCCATATACGCTTCCATCGGTAATT 60.047 40.000 0.00 0.00 0.00 1.40
3924 4968 6.153170 TCCATATACGCTTCCATCGGTAATTA 59.847 38.462 0.00 0.00 0.00 1.40
3925 4969 6.984474 CCATATACGCTTCCATCGGTAATTAT 59.016 38.462 0.00 0.00 0.00 1.28
3927 4971 4.330944 ACGCTTCCATCGGTAATTATCA 57.669 40.909 0.00 0.00 0.00 2.15
3928 4972 4.699637 ACGCTTCCATCGGTAATTATCAA 58.300 39.130 0.00 0.00 0.00 2.57
3929 4973 5.120399 ACGCTTCCATCGGTAATTATCAAA 58.880 37.500 0.00 0.00 0.00 2.69
3932 4976 6.238374 CGCTTCCATCGGTAATTATCAAACTT 60.238 38.462 0.00 0.00 0.00 2.66
3934 4978 8.068380 GCTTCCATCGGTAATTATCAAACTTAC 58.932 37.037 0.00 0.00 0.00 2.34
3936 4980 9.675464 TTCCATCGGTAATTATCAAACTTACTT 57.325 29.630 0.00 0.00 0.00 2.24
3937 4981 9.104965 TCCATCGGTAATTATCAAACTTACTTG 57.895 33.333 0.00 0.00 0.00 3.16
3938 4982 9.104965 CCATCGGTAATTATCAAACTTACTTGA 57.895 33.333 0.00 0.00 39.56 3.02
3940 4984 8.193250 TCGGTAATTATCAAACTTACTTGAGC 57.807 34.615 0.00 0.00 38.66 4.26
3942 4986 8.328864 CGGTAATTATCAAACTTACTTGAGCTC 58.671 37.037 6.82 6.82 38.66 4.09
3943 4987 9.162764 GGTAATTATCAAACTTACTTGAGCTCA 57.837 33.333 13.74 13.74 38.66 4.26
3946 4990 5.557891 ATCAAACTTACTTGAGCTCATGC 57.442 39.130 25.15 0.00 38.66 4.06
3947 4991 3.753272 TCAAACTTACTTGAGCTCATGCC 59.247 43.478 25.15 0.00 40.80 4.40
3951 4995 3.693085 ACTTACTTGAGCTCATGCCATTG 59.307 43.478 25.15 14.90 40.80 2.82
3952 4996 1.471119 ACTTGAGCTCATGCCATTGG 58.529 50.000 25.15 0.00 40.80 3.16
3964 5008 1.944032 GCCATTGGCCATGACATTTC 58.056 50.000 17.28 0.00 44.06 2.17
3967 5011 2.101917 CCATTGGCCATGACATTTCTCC 59.898 50.000 6.09 0.00 34.31 3.71
3968 5012 1.462616 TTGGCCATGACATTTCTCCG 58.537 50.000 6.09 0.00 0.00 4.63
3969 5013 0.394216 TGGCCATGACATTTCTCCGG 60.394 55.000 0.00 0.00 0.00 5.14
3971 5015 1.017387 GCCATGACATTTCTCCGGAC 58.983 55.000 0.00 0.00 0.00 4.79
3972 5016 1.668419 CCATGACATTTCTCCGGACC 58.332 55.000 0.00 0.00 0.00 4.46
3973 5017 1.210478 CCATGACATTTCTCCGGACCT 59.790 52.381 0.00 0.00 0.00 3.85
3975 5019 2.762535 TGACATTTCTCCGGACCTTC 57.237 50.000 0.00 0.00 0.00 3.46
3976 5020 1.974957 TGACATTTCTCCGGACCTTCA 59.025 47.619 0.00 0.00 0.00 3.02
3977 5021 2.370519 TGACATTTCTCCGGACCTTCAA 59.629 45.455 0.00 0.00 0.00 2.69
3978 5022 3.009033 TGACATTTCTCCGGACCTTCAAT 59.991 43.478 0.00 0.00 0.00 2.57
3979 5023 4.010349 GACATTTCTCCGGACCTTCAATT 58.990 43.478 0.00 0.00 0.00 2.32
3980 5024 4.407365 ACATTTCTCCGGACCTTCAATTT 58.593 39.130 0.00 0.00 0.00 1.82
3981 5025 4.218417 ACATTTCTCCGGACCTTCAATTTG 59.782 41.667 0.00 0.00 0.00 2.32
3985 5029 4.513442 TCTCCGGACCTTCAATTTGTATG 58.487 43.478 0.00 0.00 0.00 2.39
3986 5030 3.013921 TCCGGACCTTCAATTTGTATGC 58.986 45.455 0.00 0.00 0.00 3.14
3987 5031 3.016736 CCGGACCTTCAATTTGTATGCT 58.983 45.455 0.00 0.00 0.00 3.79
3989 5033 4.414852 CGGACCTTCAATTTGTATGCTTG 58.585 43.478 0.00 0.00 0.00 4.01
3990 5034 4.082787 CGGACCTTCAATTTGTATGCTTGT 60.083 41.667 0.00 0.00 0.00 3.16
3991 5035 5.402398 GGACCTTCAATTTGTATGCTTGTC 58.598 41.667 0.00 0.00 0.00 3.18
3994 5038 6.215845 ACCTTCAATTTGTATGCTTGTCAAC 58.784 36.000 0.00 0.00 0.00 3.18
3995 5039 5.343058 CCTTCAATTTGTATGCTTGTCAACG 59.657 40.000 0.00 0.00 0.00 4.10
3996 5040 5.431420 TCAATTTGTATGCTTGTCAACGT 57.569 34.783 0.00 0.00 0.00 3.99
3997 5041 5.211454 TCAATTTGTATGCTTGTCAACGTG 58.789 37.500 0.00 0.00 0.00 4.49
3999 5043 0.871722 TGTATGCTTGTCAACGTGGC 59.128 50.000 0.00 0.00 0.00 5.01
4000 5044 0.871722 GTATGCTTGTCAACGTGGCA 59.128 50.000 0.00 0.28 37.32 4.92
4001 5045 1.265635 GTATGCTTGTCAACGTGGCAA 59.734 47.619 1.81 0.00 40.00 4.52
4004 5048 3.911137 TTGTCAACGTGGCAAGCA 58.089 50.000 0.00 0.00 37.00 3.91
4005 5049 2.184323 TTGTCAACGTGGCAAGCAA 58.816 47.368 0.00 0.00 37.00 3.91
4006 5050 0.743688 TTGTCAACGTGGCAAGCAAT 59.256 45.000 0.00 0.00 37.00 3.56
4007 5051 0.030504 TGTCAACGTGGCAAGCAATG 59.969 50.000 0.00 0.00 0.00 2.82
4008 5052 0.310543 GTCAACGTGGCAAGCAATGA 59.689 50.000 0.00 0.28 0.00 2.57
4010 5054 1.001487 TCAACGTGGCAAGCAATGAAG 60.001 47.619 0.00 0.00 0.00 3.02
4011 5055 1.032014 AACGTGGCAAGCAATGAAGT 58.968 45.000 0.00 0.00 0.00 3.01
4012 5056 1.890876 ACGTGGCAAGCAATGAAGTA 58.109 45.000 0.00 0.00 0.00 2.24
4013 5057 1.535462 ACGTGGCAAGCAATGAAGTAC 59.465 47.619 0.00 0.00 0.00 2.73
4016 5060 3.728864 CGTGGCAAGCAATGAAGTACATC 60.729 47.826 0.00 0.00 38.38 3.06
4018 5062 3.825585 TGGCAAGCAATGAAGTACATCAA 59.174 39.130 4.69 0.00 38.38 2.57
4020 5064 4.321156 GGCAAGCAATGAAGTACATCAACA 60.321 41.667 4.69 0.00 38.38 3.33
4021 5065 5.221880 GCAAGCAATGAAGTACATCAACAA 58.778 37.500 4.69 0.00 38.38 2.83
4022 5066 5.117592 GCAAGCAATGAAGTACATCAACAAC 59.882 40.000 4.69 0.00 38.38 3.32
4023 5067 6.207928 CAAGCAATGAAGTACATCAACAACA 58.792 36.000 4.69 0.00 38.38 3.33
4024 5068 6.579666 AGCAATGAAGTACATCAACAACAT 57.420 33.333 4.69 0.00 38.38 2.71
4025 5069 6.615088 AGCAATGAAGTACATCAACAACATC 58.385 36.000 4.69 0.00 38.38 3.06
4026 5070 6.432162 AGCAATGAAGTACATCAACAACATCT 59.568 34.615 4.69 0.00 38.38 2.90
4027 5071 7.040201 AGCAATGAAGTACATCAACAACATCTT 60.040 33.333 4.69 0.00 38.38 2.40
4028 5072 7.061441 GCAATGAAGTACATCAACAACATCTTG 59.939 37.037 4.69 4.03 38.38 3.02
4029 5073 7.750229 ATGAAGTACATCAACAACATCTTGT 57.250 32.000 4.69 0.00 37.08 3.16
4031 5075 8.669946 TGAAGTACATCAACAACATCTTGTAA 57.330 30.769 0.00 0.00 39.88 2.41
4033 5077 8.445275 AAGTACATCAACAACATCTTGTAACA 57.555 30.769 0.00 0.00 39.88 2.41
4035 5079 5.747565 ACATCAACAACATCTTGTAACACG 58.252 37.500 0.00 0.00 39.88 4.49
4036 5080 4.804608 TCAACAACATCTTGTAACACGG 57.195 40.909 0.00 0.00 39.88 4.94
4038 5082 3.478857 ACAACATCTTGTAACACGGGA 57.521 42.857 0.00 0.00 38.95 5.14
4040 5084 4.000988 ACAACATCTTGTAACACGGGATC 58.999 43.478 0.00 0.00 38.95 3.36
4041 5085 4.253685 CAACATCTTGTAACACGGGATCT 58.746 43.478 0.00 0.00 0.00 2.75
4042 5086 4.124851 ACATCTTGTAACACGGGATCTC 57.875 45.455 0.00 0.00 0.00 2.75
4043 5087 3.118738 ACATCTTGTAACACGGGATCTCC 60.119 47.826 0.00 0.00 0.00 3.71
4044 5088 2.531771 TCTTGTAACACGGGATCTCCA 58.468 47.619 0.00 0.00 37.91 3.86
4045 5089 2.496070 TCTTGTAACACGGGATCTCCAG 59.504 50.000 0.00 0.00 37.91 3.86
4046 5090 2.225382 TGTAACACGGGATCTCCAGA 57.775 50.000 3.26 0.00 37.91 3.86
4048 5092 3.104512 TGTAACACGGGATCTCCAGAAT 58.895 45.455 3.26 0.00 37.91 2.40
4049 5093 4.283337 TGTAACACGGGATCTCCAGAATA 58.717 43.478 3.26 0.00 37.91 1.75
4050 5094 4.712829 TGTAACACGGGATCTCCAGAATAA 59.287 41.667 3.26 0.00 37.91 1.40
4052 5096 2.103263 ACACGGGATCTCCAGAATAAGC 59.897 50.000 3.26 0.00 37.91 3.09
4053 5097 1.694696 ACGGGATCTCCAGAATAAGCC 59.305 52.381 3.26 0.00 37.91 4.35
4054 5098 1.337260 CGGGATCTCCAGAATAAGCCG 60.337 57.143 0.00 0.00 37.91 5.52
4055 5099 1.002544 GGGATCTCCAGAATAAGCCGG 59.997 57.143 0.00 0.00 37.91 6.13
4057 5101 0.398318 ATCTCCAGAATAAGCCGGGC 59.602 55.000 12.11 12.11 0.00 6.13
4059 5103 2.189521 CCAGAATAAGCCGGGCGT 59.810 61.111 14.39 13.69 0.00 5.68
4060 5104 1.887707 CCAGAATAAGCCGGGCGTC 60.888 63.158 11.64 8.73 0.00 5.19
4062 5106 2.064581 AGAATAAGCCGGGCGTCCT 61.065 57.895 11.64 4.73 0.00 3.85
4063 5107 1.594564 GAATAAGCCGGGCGTCCTC 60.595 63.158 11.64 5.61 0.00 3.71
4064 5108 3.441011 AATAAGCCGGGCGTCCTCG 62.441 63.158 11.64 0.00 40.37 4.63
4072 5116 1.523524 GGGCGTCCTCGGGAATAAA 59.476 57.895 0.00 0.00 37.56 1.40
4073 5117 0.812811 GGGCGTCCTCGGGAATAAAC 60.813 60.000 0.00 0.00 37.56 2.01
4075 5119 1.474498 GGCGTCCTCGGGAATAAACAT 60.474 52.381 0.00 0.00 37.56 2.71
4076 5120 1.597663 GCGTCCTCGGGAATAAACATG 59.402 52.381 0.00 0.00 37.56 3.21
4077 5121 2.901249 CGTCCTCGGGAATAAACATGT 58.099 47.619 0.00 0.00 31.38 3.21
4079 5123 3.203716 GTCCTCGGGAATAAACATGTCC 58.796 50.000 0.00 0.00 31.38 4.02
4080 5124 2.841266 TCCTCGGGAATAAACATGTCCA 59.159 45.455 0.00 0.00 32.70 4.02
4082 5126 2.614057 CTCGGGAATAAACATGTCCAGC 59.386 50.000 0.00 0.00 32.70 4.85
4083 5127 1.330521 CGGGAATAAACATGTCCAGCG 59.669 52.381 0.00 0.00 32.70 5.18
4085 5129 1.065551 GGAATAAACATGTCCAGCGCC 59.934 52.381 2.29 0.00 0.00 6.53
4086 5130 1.742831 GAATAAACATGTCCAGCGCCA 59.257 47.619 2.29 0.00 0.00 5.69
4087 5131 1.382522 ATAAACATGTCCAGCGCCAG 58.617 50.000 2.29 0.00 0.00 4.85
4088 5132 1.305219 TAAACATGTCCAGCGCCAGC 61.305 55.000 2.29 0.00 45.58 4.85
4099 5143 4.476410 CGCCAGCTACTCGTCGCA 62.476 66.667 0.00 0.00 0.00 5.10
4100 5144 2.105128 GCCAGCTACTCGTCGCAT 59.895 61.111 0.00 0.00 0.00 4.73
4101 5145 1.946650 GCCAGCTACTCGTCGCATC 60.947 63.158 0.00 0.00 0.00 3.91
4102 5146 1.433471 CCAGCTACTCGTCGCATCA 59.567 57.895 0.00 0.00 0.00 3.07
4103 5147 0.179137 CCAGCTACTCGTCGCATCAA 60.179 55.000 0.00 0.00 0.00 2.57
4105 5149 0.526211 AGCTACTCGTCGCATCAACA 59.474 50.000 0.00 0.00 0.00 3.33
4106 5150 1.135139 AGCTACTCGTCGCATCAACAT 59.865 47.619 0.00 0.00 0.00 2.71
4107 5151 1.256376 GCTACTCGTCGCATCAACATG 59.744 52.381 0.00 0.00 0.00 3.21
4116 5160 1.616921 CATCAACATGCCCTCCCCT 59.383 57.895 0.00 0.00 0.00 4.79
4117 5161 0.846015 CATCAACATGCCCTCCCCTA 59.154 55.000 0.00 0.00 0.00 3.53
4118 5162 1.143813 ATCAACATGCCCTCCCCTAG 58.856 55.000 0.00 0.00 0.00 3.02
4119 5163 0.988145 TCAACATGCCCTCCCCTAGG 60.988 60.000 0.06 0.06 46.09 3.02
4125 5169 1.920835 GCCCTCCCCTAGGCCATAG 60.921 68.421 5.01 3.76 45.03 2.23
4126 5170 1.920835 CCCTCCCCTAGGCCATAGC 60.921 68.421 5.01 0.00 45.03 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 8.395633 GTTATTTGTGTCAACTTCAGTGTTAGT 58.604 33.333 0.00 0.00 0.00 2.24
59 60 8.394877 TGTTATTTGTGTCAACTTCAGTGTTAG 58.605 33.333 0.00 0.00 0.00 2.34
60 61 8.270080 TGTTATTTGTGTCAACTTCAGTGTTA 57.730 30.769 0.00 0.00 0.00 2.41
61 62 7.151999 TGTTATTTGTGTCAACTTCAGTGTT 57.848 32.000 0.00 0.00 0.00 3.32
62 63 6.751514 TGTTATTTGTGTCAACTTCAGTGT 57.248 33.333 0.00 0.00 0.00 3.55
63 64 6.472163 GGTTGTTATTTGTGTCAACTTCAGTG 59.528 38.462 0.00 0.00 39.69 3.66
64 65 6.151985 TGGTTGTTATTTGTGTCAACTTCAGT 59.848 34.615 0.00 0.00 39.69 3.41
65 66 6.472163 GTGGTTGTTATTTGTGTCAACTTCAG 59.528 38.462 0.00 0.00 39.69 3.02
66 67 6.071896 TGTGGTTGTTATTTGTGTCAACTTCA 60.072 34.615 0.00 0.00 39.69 3.02
67 68 6.252655 GTGTGGTTGTTATTTGTGTCAACTTC 59.747 38.462 0.00 0.00 39.69 3.01
68 69 6.096695 GTGTGGTTGTTATTTGTGTCAACTT 58.903 36.000 0.00 0.00 39.69 2.66
69 70 5.184096 TGTGTGGTTGTTATTTGTGTCAACT 59.816 36.000 0.00 0.00 39.69 3.16
70 71 5.403246 TGTGTGGTTGTTATTTGTGTCAAC 58.597 37.500 0.00 0.00 39.24 3.18
71 72 5.644977 TGTGTGGTTGTTATTTGTGTCAA 57.355 34.783 0.00 0.00 0.00 3.18
72 73 5.644977 TTGTGTGGTTGTTATTTGTGTCA 57.355 34.783 0.00 0.00 0.00 3.58
73 74 5.051106 GCATTGTGTGGTTGTTATTTGTGTC 60.051 40.000 0.00 0.00 0.00 3.67
74 75 4.808364 GCATTGTGTGGTTGTTATTTGTGT 59.192 37.500 0.00 0.00 0.00 3.72
75 76 4.807834 TGCATTGTGTGGTTGTTATTTGTG 59.192 37.500 0.00 0.00 0.00 3.33
76 77 5.016051 TGCATTGTGTGGTTGTTATTTGT 57.984 34.783 0.00 0.00 0.00 2.83
77 78 6.542574 AATGCATTGTGTGGTTGTTATTTG 57.457 33.333 12.09 0.00 0.00 2.32
78 79 6.873076 CCTAATGCATTGTGTGGTTGTTATTT 59.127 34.615 22.27 0.00 0.00 1.40
79 80 6.397272 CCTAATGCATTGTGTGGTTGTTATT 58.603 36.000 22.27 0.00 0.00 1.40
80 81 5.624281 GCCTAATGCATTGTGTGGTTGTTAT 60.624 40.000 22.27 0.00 40.77 1.89
81 82 4.321601 GCCTAATGCATTGTGTGGTTGTTA 60.322 41.667 22.27 0.00 40.77 2.41
82 83 3.554752 GCCTAATGCATTGTGTGGTTGTT 60.555 43.478 22.27 0.00 40.77 2.83
83 84 2.029110 GCCTAATGCATTGTGTGGTTGT 60.029 45.455 22.27 0.00 40.77 3.32
84 85 2.609350 GCCTAATGCATTGTGTGGTTG 58.391 47.619 22.27 3.30 40.77 3.77
85 86 1.550072 GGCCTAATGCATTGTGTGGTT 59.450 47.619 22.27 0.00 43.89 3.67
86 87 1.185315 GGCCTAATGCATTGTGTGGT 58.815 50.000 22.27 0.00 43.89 4.16
87 88 1.135024 GTGGCCTAATGCATTGTGTGG 60.135 52.381 22.27 17.43 43.89 4.17
88 89 1.820519 AGTGGCCTAATGCATTGTGTG 59.179 47.619 22.27 8.34 43.89 3.82
89 90 2.220653 AGTGGCCTAATGCATTGTGT 57.779 45.000 22.27 0.00 43.89 3.72
90 91 2.033801 GCTAGTGGCCTAATGCATTGTG 59.966 50.000 22.27 13.18 43.89 3.33
91 92 2.301346 GCTAGTGGCCTAATGCATTGT 58.699 47.619 22.27 0.00 43.89 2.71
92 93 2.292569 CTGCTAGTGGCCTAATGCATTG 59.707 50.000 22.27 11.41 43.89 2.82
93 94 2.579873 CTGCTAGTGGCCTAATGCATT 58.420 47.619 17.56 17.56 43.89 3.56
94 95 1.816961 GCTGCTAGTGGCCTAATGCAT 60.817 52.381 3.32 0.00 43.89 3.96
95 96 0.464373 GCTGCTAGTGGCCTAATGCA 60.464 55.000 3.32 9.04 43.89 3.96
96 97 1.169034 GGCTGCTAGTGGCCTAATGC 61.169 60.000 17.03 4.26 44.48 3.56
97 98 3.012560 GGCTGCTAGTGGCCTAATG 57.987 57.895 17.03 0.00 44.48 1.90
103 104 1.750193 TTTGTATGGCTGCTAGTGGC 58.250 50.000 0.00 0.00 42.22 5.01
104 105 4.989279 ATTTTTGTATGGCTGCTAGTGG 57.011 40.909 0.00 0.00 0.00 4.00
105 106 5.293324 TCGTATTTTTGTATGGCTGCTAGTG 59.707 40.000 0.00 0.00 0.00 2.74
275 330 5.384063 TTTGTACCGTATCACGTTTCCTA 57.616 39.130 0.00 0.00 40.58 2.94
306 361 3.658757 ACTTCAGTTCTCACTCTGCTC 57.341 47.619 0.00 0.00 0.00 4.26
326 381 1.677576 CGACTGCCGGGTAGTGTAATA 59.322 52.381 22.95 0.00 33.91 0.98
327 382 0.458669 CGACTGCCGGGTAGTGTAAT 59.541 55.000 22.95 0.00 33.91 1.89
346 401 3.319405 TCTCCATAGCCGAGTCTTTGATC 59.681 47.826 0.00 0.00 0.00 2.92
347 402 3.300388 TCTCCATAGCCGAGTCTTTGAT 58.700 45.455 0.00 0.00 0.00 2.57
348 403 2.735151 TCTCCATAGCCGAGTCTTTGA 58.265 47.619 0.00 0.00 0.00 2.69
349 404 3.118956 ACTTCTCCATAGCCGAGTCTTTG 60.119 47.826 0.00 0.00 0.00 2.77
350 405 3.100671 ACTTCTCCATAGCCGAGTCTTT 58.899 45.455 0.00 0.00 0.00 2.52
351 406 2.691011 GACTTCTCCATAGCCGAGTCTT 59.309 50.000 0.00 0.00 0.00 3.01
355 410 1.268794 CGTGACTTCTCCATAGCCGAG 60.269 57.143 0.00 0.00 0.00 4.63
358 413 1.927895 CACGTGACTTCTCCATAGCC 58.072 55.000 10.90 0.00 0.00 3.93
402 464 6.054295 AGAATCTTGCTTAGATGGACATGAC 58.946 40.000 0.00 0.00 42.90 3.06
449 520 6.423001 GGTACTGCCGATAGATAACGAAAATT 59.577 38.462 0.00 0.00 39.76 1.82
450 521 5.924825 GGTACTGCCGATAGATAACGAAAAT 59.075 40.000 0.00 0.00 39.76 1.82
466 537 6.403878 TCAGTTTTAGTAGATTGGTACTGCC 58.596 40.000 0.00 0.00 34.91 4.85
477 548 8.567948 CAATTTCCAAAGCTCAGTTTTAGTAGA 58.432 33.333 0.00 0.00 0.00 2.59
487 558 2.559668 TGCCTCAATTTCCAAAGCTCAG 59.440 45.455 0.00 0.00 0.00 3.35
551 622 1.606668 TGACTTTGCGTCCCAACATTC 59.393 47.619 0.00 0.00 42.13 2.67
555 626 0.387239 GCATGACTTTGCGTCCCAAC 60.387 55.000 0.00 0.00 42.13 3.77
559 630 2.325082 ACGGCATGACTTTGCGTCC 61.325 57.895 0.00 0.00 43.71 4.79
560 631 1.154413 CACGGCATGACTTTGCGTC 60.154 57.895 0.00 0.00 43.71 5.19
564 635 1.739466 AGCATACACGGCATGACTTTG 59.261 47.619 0.00 0.00 0.00 2.77
578 649 3.868757 TCAGTGGAGTGTGTAGCATAC 57.131 47.619 0.00 0.00 43.42 2.39
586 657 3.808728 TCCTTTCTTTCAGTGGAGTGTG 58.191 45.455 0.00 0.00 0.00 3.82
597 668 5.509163 GCCACTTTAGGGTTTCCTTTCTTTC 60.509 44.000 0.00 0.00 41.56 2.62
628 704 2.660490 CCGTCAATCGCAATTGTGTTT 58.340 42.857 18.08 13.37 42.46 2.83
630 706 0.109781 GCCGTCAATCGCAATTGTGT 60.110 50.000 18.08 3.83 42.46 3.72
634 710 1.396996 GTAGTGCCGTCAATCGCAATT 59.603 47.619 0.00 0.00 38.35 2.32
653 729 8.899427 ATCATTCATCGATAAATCAGAGTTGT 57.101 30.769 0.00 0.00 0.00 3.32
654 730 8.441608 GGATCATTCATCGATAAATCAGAGTTG 58.558 37.037 0.00 0.00 31.26 3.16
668 744 3.614159 ATGTTTGCGGATCATTCATCG 57.386 42.857 0.00 0.00 31.26 3.84
680 756 6.183359 GCTTGAAACTTGAAGATATGTTTGCG 60.183 38.462 0.00 0.00 33.49 4.85
685 761 7.750229 TTCAGCTTGAAACTTGAAGATATGT 57.250 32.000 0.00 0.00 32.71 2.29
686 762 9.635520 ATTTTCAGCTTGAAACTTGAAGATATG 57.364 29.630 0.00 0.00 45.03 1.78
690 766 7.546358 TGAATTTTCAGCTTGAAACTTGAAGA 58.454 30.769 14.37 0.00 45.03 2.87
691 767 7.760131 TGAATTTTCAGCTTGAAACTTGAAG 57.240 32.000 14.37 0.00 45.03 3.02
692 768 9.985730 ATATGAATTTTCAGCTTGAAACTTGAA 57.014 25.926 14.37 0.00 45.03 2.69
713 799 8.944138 TGTCTGACCTTTTTGGGATATATATGA 58.056 33.333 5.17 0.00 41.11 2.15
724 810 4.744631 CGGAAAATTGTCTGACCTTTTTGG 59.255 41.667 17.24 10.23 42.93 3.28
725 811 4.744631 CCGGAAAATTGTCTGACCTTTTTG 59.255 41.667 17.24 12.90 0.00 2.44
726 812 4.647399 TCCGGAAAATTGTCTGACCTTTTT 59.353 37.500 0.00 14.59 0.00 1.94
731 817 2.228103 GGTTCCGGAAAATTGTCTGACC 59.772 50.000 20.79 8.80 0.00 4.02
732 818 2.882137 TGGTTCCGGAAAATTGTCTGAC 59.118 45.455 20.79 2.31 0.00 3.51
733 819 2.882137 GTGGTTCCGGAAAATTGTCTGA 59.118 45.455 20.79 0.00 0.00 3.27
734 820 2.621055 TGTGGTTCCGGAAAATTGTCTG 59.379 45.455 20.79 0.00 0.00 3.51
735 821 2.938838 TGTGGTTCCGGAAAATTGTCT 58.061 42.857 20.79 0.00 0.00 3.41
738 824 3.389221 CCTTTGTGGTTCCGGAAAATTG 58.611 45.455 20.79 5.69 0.00 2.32
765 880 4.207891 TCAGTTCTAAGATCCCACTTGC 57.792 45.455 0.00 0.00 0.00 4.01
775 890 4.776349 TGTGTGCCTTTTCAGTTCTAAGA 58.224 39.130 0.00 0.00 0.00 2.10
783 898 6.959671 TTTACTTTTTGTGTGCCTTTTCAG 57.040 33.333 0.00 0.00 0.00 3.02
810 932 3.243602 GGGCACACACGATTTACCTTTTT 60.244 43.478 0.00 0.00 0.00 1.94
850 973 1.633945 ACCTCCCTATGGACCAACAAC 59.366 52.381 0.00 0.00 35.03 3.32
910 1033 1.875576 GCCAACAGGAGAGACACTGTG 60.876 57.143 6.19 6.19 46.49 3.66
916 1039 0.322008 CAAGGGCCAACAGGAGAGAC 60.322 60.000 6.18 0.00 0.00 3.36
931 1054 1.635663 CTAAAGCGACACGGCCAAGG 61.636 60.000 2.24 0.00 0.00 3.61
932 1055 1.635663 CCTAAAGCGACACGGCCAAG 61.636 60.000 2.24 0.00 0.00 3.61
991 1189 1.400846 CTCACAACTCATGGCTCATGC 59.599 52.381 9.54 0.00 41.18 4.06
993 1191 1.911357 TCCTCACAACTCATGGCTCAT 59.089 47.619 0.00 0.00 0.00 2.90
994 1192 1.277273 CTCCTCACAACTCATGGCTCA 59.723 52.381 0.00 0.00 0.00 4.26
995 1193 2.011046 GCTCCTCACAACTCATGGCTC 61.011 57.143 0.00 0.00 0.00 4.70
997 1195 1.028868 GGCTCCTCACAACTCATGGC 61.029 60.000 0.00 0.00 0.00 4.40
1005 1210 0.904865 ACATCTCGGGCTCCTCACAA 60.905 55.000 0.00 0.00 0.00 3.33
1490 1729 2.095978 AACCTGGAAGTGGACGTCCG 62.096 60.000 28.70 14.50 45.68 4.79
1612 1890 5.086104 ACATAGGTGACAAATAAGTCGCT 57.914 39.130 7.47 0.00 45.75 4.93
1614 1892 9.745880 ATAGTAACATAGGTGACAAATAAGTCG 57.254 33.333 0.00 0.00 41.41 4.18
1761 2066 1.074775 GGGCCACATGACACCAGAA 59.925 57.895 4.39 0.00 0.00 3.02
1968 2309 3.265221 TCTTCAGGAGCACCAAATGAGAT 59.735 43.478 2.07 0.00 38.94 2.75
2145 2663 7.011669 GGCATTCCATCAACCAATTATCAAAAG 59.988 37.037 0.00 0.00 0.00 2.27
2472 3247 1.070758 GCCATCACATCGTCTGGGTAT 59.929 52.381 0.00 0.00 0.00 2.73
2604 3388 4.106029 TCACCGCTACACTAAACTCATC 57.894 45.455 0.00 0.00 0.00 2.92
2659 3443 9.628500 AGTTAGTTTTTAATGAAGTTGTCTCCT 57.372 29.630 0.00 0.00 0.00 3.69
2794 3745 3.498397 AGTAAAACAAGTGATCGTGGCTG 59.502 43.478 0.00 0.00 0.00 4.85
2905 3856 8.854614 ATAAGCAGAGAATAACAACAGAAAGT 57.145 30.769 0.00 0.00 0.00 2.66
2945 3896 7.876936 AGTTGAATCATCTCAGCATTATTGT 57.123 32.000 0.00 0.00 0.00 2.71
2981 3932 2.389962 TTGTGGCAATCGTACCTACC 57.610 50.000 0.00 0.00 0.00 3.18
2989 3940 2.164219 AGCTTAACCATTGTGGCAATCG 59.836 45.455 0.00 0.00 42.67 3.34
2994 3945 3.947834 ACTATCAGCTTAACCATTGTGGC 59.052 43.478 0.00 0.00 42.67 5.01
3048 3999 7.624360 TTCATGGAAAAGCGAACTTATACAT 57.376 32.000 0.00 0.00 34.05 2.29
3129 4081 1.961277 CTCAGCAACCGGGACACAC 60.961 63.158 6.32 0.00 0.00 3.82
3153 4106 0.531657 TTCAGCAAATGGCCCATTCG 59.468 50.000 9.93 0.00 46.50 3.34
3160 4113 2.669391 CGAAGAACCTTCAGCAAATGGC 60.669 50.000 7.38 0.00 45.30 4.40
3163 4116 1.541588 GCCGAAGAACCTTCAGCAAAT 59.458 47.619 9.33 0.00 0.00 2.32
3180 4134 0.179089 CTGATCTCCAGGTGAAGCCG 60.179 60.000 0.00 0.00 43.70 5.52
3304 4273 1.019673 CTTCATCATCCCAGTTGGCG 58.980 55.000 0.00 0.00 0.00 5.69
3360 4329 6.293027 GGAAAGCAAATGACAAATGAACCAAG 60.293 38.462 0.00 0.00 0.00 3.61
3361 4330 5.526846 GGAAAGCAAATGACAAATGAACCAA 59.473 36.000 0.00 0.00 0.00 3.67
3435 4405 1.528586 GTGAGATGCACACAGACACAC 59.471 52.381 0.00 0.00 46.91 3.82
3445 4415 2.086054 AGAGAAACGGTGAGATGCAC 57.914 50.000 0.00 0.00 46.98 4.57
3447 4417 5.803020 ATAAAAGAGAAACGGTGAGATGC 57.197 39.130 0.00 0.00 0.00 3.91
3448 4418 7.133891 ACAATAAAAGAGAAACGGTGAGATG 57.866 36.000 0.00 0.00 0.00 2.90
3449 4419 6.371825 GGACAATAAAAGAGAAACGGTGAGAT 59.628 38.462 0.00 0.00 0.00 2.75
3456 4426 6.071463 CACGAAGGACAATAAAAGAGAAACG 58.929 40.000 0.00 0.00 0.00 3.60
3463 4433 4.932200 AGAGAGCACGAAGGACAATAAAAG 59.068 41.667 0.00 0.00 0.00 2.27
3473 4443 1.548269 AGGAAGAAGAGAGCACGAAGG 59.452 52.381 0.00 0.00 0.00 3.46
3530 4500 7.435192 GCAGCACTTATTATTATTTCCAACCAC 59.565 37.037 0.00 0.00 0.00 4.16
3565 4555 6.741992 ATGTACTGAAATCGCTTTGATCAA 57.258 33.333 3.38 3.38 35.84 2.57
3572 4562 8.718102 ACTTAATGTATGTACTGAAATCGCTT 57.282 30.769 0.00 0.00 0.00 4.68
3617 4613 3.003689 AGAACACCATCTCTTGCGTTTTG 59.996 43.478 0.00 0.00 0.00 2.44
3670 4682 7.739825 TGGTAGGATAGGAAGATTGAATGAAG 58.260 38.462 0.00 0.00 0.00 3.02
3674 4686 6.846505 TCACTGGTAGGATAGGAAGATTGAAT 59.153 38.462 0.00 0.00 0.00 2.57
3679 4691 9.707957 CTATAATCACTGGTAGGATAGGAAGAT 57.292 37.037 0.00 0.00 0.00 2.40
3682 4694 9.892444 TTTCTATAATCACTGGTAGGATAGGAA 57.108 33.333 0.00 0.00 0.00 3.36
3710 4722 8.484214 AGACTGAACATAATCATAGGCTCTTA 57.516 34.615 0.00 0.00 0.00 2.10
3711 4723 7.372260 AGACTGAACATAATCATAGGCTCTT 57.628 36.000 0.00 0.00 0.00 2.85
3714 4726 6.328672 AGGAAGACTGAACATAATCATAGGCT 59.671 38.462 0.00 0.00 0.00 4.58
3715 4727 6.529220 AGGAAGACTGAACATAATCATAGGC 58.471 40.000 0.00 0.00 0.00 3.93
3717 4729 9.868277 GGATAGGAAGACTGAACATAATCATAG 57.132 37.037 0.00 0.00 0.00 2.23
3720 4751 7.921041 AGGATAGGAAGACTGAACATAATCA 57.079 36.000 0.00 0.00 0.00 2.57
3755 4786 3.518705 ACTGAGCAAATCTGAGTCTCCAT 59.481 43.478 0.00 0.00 33.91 3.41
3762 4793 4.389382 CACTTCTCACTGAGCAAATCTGAG 59.611 45.833 0.62 0.00 33.52 3.35
3763 4802 4.039609 TCACTTCTCACTGAGCAAATCTGA 59.960 41.667 0.62 0.00 0.00 3.27
3774 4813 7.148641 AGTGTACAACTATTCACTTCTCACTG 58.851 38.462 0.00 0.00 37.81 3.66
3788 4827 5.051153 TCGTCAAATGCAAGTGTACAACTA 58.949 37.500 0.00 0.00 38.56 2.24
3809 4848 1.667724 CTAAAGCTGGCACCTGAATCG 59.332 52.381 0.00 0.00 0.00 3.34
3810 4849 2.716217 ACTAAAGCTGGCACCTGAATC 58.284 47.619 0.00 0.00 0.00 2.52
3845 4889 6.033831 CCATTCTATGCACGTGAAATTTGTTC 59.966 38.462 22.23 0.00 0.00 3.18
3856 4900 2.401583 TGCTTCCATTCTATGCACGT 57.598 45.000 0.00 0.00 0.00 4.49
3857 4901 2.938451 TCTTGCTTCCATTCTATGCACG 59.062 45.455 0.00 0.00 33.13 5.34
3860 4904 2.620585 GGGTCTTGCTTCCATTCTATGC 59.379 50.000 0.00 0.00 0.00 3.14
3862 4906 2.175715 GGGGGTCTTGCTTCCATTCTAT 59.824 50.000 0.00 0.00 0.00 1.98
3863 4907 1.564348 GGGGGTCTTGCTTCCATTCTA 59.436 52.381 0.00 0.00 0.00 2.10
3864 4908 0.332972 GGGGGTCTTGCTTCCATTCT 59.667 55.000 0.00 0.00 0.00 2.40
3865 4909 2.887790 GGGGGTCTTGCTTCCATTC 58.112 57.895 0.00 0.00 0.00 2.67
3884 4928 2.960129 GGAGAATACCGCGCACCG 60.960 66.667 8.75 0.00 0.00 4.94
3885 4929 0.032952 TATGGAGAATACCGCGCACC 59.967 55.000 8.75 0.00 0.00 5.01
3886 4930 2.080286 ATATGGAGAATACCGCGCAC 57.920 50.000 8.75 0.00 0.00 5.34
3887 4931 2.414957 CGTATATGGAGAATACCGCGCA 60.415 50.000 8.75 0.00 0.00 6.09
3889 4933 2.159421 AGCGTATATGGAGAATACCGCG 60.159 50.000 0.00 0.00 43.80 6.46
3891 4935 4.082408 TGGAAGCGTATATGGAGAATACCG 60.082 45.833 0.00 0.00 0.00 4.02
3892 4936 5.401531 TGGAAGCGTATATGGAGAATACC 57.598 43.478 0.00 0.00 0.00 2.73
3894 4938 5.891451 CGATGGAAGCGTATATGGAGAATA 58.109 41.667 0.00 0.00 43.21 1.75
3895 4939 4.748892 CGATGGAAGCGTATATGGAGAAT 58.251 43.478 0.00 0.00 43.21 2.40
3896 4940 4.174411 CGATGGAAGCGTATATGGAGAA 57.826 45.455 0.00 0.00 43.21 2.87
3897 4941 3.850122 CGATGGAAGCGTATATGGAGA 57.150 47.619 0.00 0.00 43.21 3.71
3908 4952 6.619801 AGTTTGATAATTACCGATGGAAGC 57.380 37.500 0.00 0.00 0.00 3.86
3909 4953 9.326413 AGTAAGTTTGATAATTACCGATGGAAG 57.674 33.333 0.00 0.00 31.21 3.46
3910 4954 9.675464 AAGTAAGTTTGATAATTACCGATGGAA 57.325 29.630 0.00 0.00 31.21 3.53
3911 4955 9.104965 CAAGTAAGTTTGATAATTACCGATGGA 57.895 33.333 0.00 0.00 31.21 3.41
3912 4956 9.104965 TCAAGTAAGTTTGATAATTACCGATGG 57.895 33.333 0.00 0.00 32.39 3.51
3914 4958 8.827677 GCTCAAGTAAGTTTGATAATTACCGAT 58.172 33.333 0.00 0.00 36.55 4.18
3916 4960 8.197988 AGCTCAAGTAAGTTTGATAATTACCG 57.802 34.615 0.00 0.00 36.55 4.02
3917 4961 9.162764 TGAGCTCAAGTAAGTTTGATAATTACC 57.837 33.333 15.67 0.00 36.55 2.85
3921 4965 7.201767 GGCATGAGCTCAAGTAAGTTTGATAAT 60.202 37.037 22.50 0.00 41.70 1.28
3922 4966 6.094048 GGCATGAGCTCAAGTAAGTTTGATAA 59.906 38.462 22.50 0.00 41.70 1.75
3923 4967 5.586243 GGCATGAGCTCAAGTAAGTTTGATA 59.414 40.000 22.50 0.00 41.70 2.15
3924 4968 4.397417 GGCATGAGCTCAAGTAAGTTTGAT 59.603 41.667 22.50 0.00 41.70 2.57
3925 4969 3.753272 GGCATGAGCTCAAGTAAGTTTGA 59.247 43.478 22.50 0.00 41.70 2.69
3927 4971 3.754965 TGGCATGAGCTCAAGTAAGTTT 58.245 40.909 22.50 0.00 41.70 2.66
3928 4972 3.423539 TGGCATGAGCTCAAGTAAGTT 57.576 42.857 22.50 0.00 41.70 2.66
3929 4973 3.641434 ATGGCATGAGCTCAAGTAAGT 57.359 42.857 22.50 0.00 41.70 2.24
3932 4976 2.646930 CCAATGGCATGAGCTCAAGTA 58.353 47.619 22.50 10.33 41.70 2.24
3946 4990 2.101917 GGAGAAATGTCATGGCCAATGG 59.898 50.000 10.96 2.10 36.86 3.16
3947 4991 2.223641 CGGAGAAATGTCATGGCCAATG 60.224 50.000 10.96 9.31 37.66 2.82
3951 4995 0.107214 TCCGGAGAAATGTCATGGCC 60.107 55.000 0.00 0.00 0.00 5.36
3952 4996 1.017387 GTCCGGAGAAATGTCATGGC 58.983 55.000 3.06 0.00 0.00 4.40
3954 4998 2.698855 AGGTCCGGAGAAATGTCATG 57.301 50.000 3.06 0.00 0.00 3.07
3955 4999 2.571653 TGAAGGTCCGGAGAAATGTCAT 59.428 45.455 3.06 0.00 0.00 3.06
3958 5002 3.721087 ATTGAAGGTCCGGAGAAATGT 57.279 42.857 3.06 0.00 0.00 2.71
3959 5003 4.218417 ACAAATTGAAGGTCCGGAGAAATG 59.782 41.667 3.06 0.00 0.00 2.32
3960 5004 4.407365 ACAAATTGAAGGTCCGGAGAAAT 58.593 39.130 3.06 0.00 0.00 2.17
3961 5005 3.827722 ACAAATTGAAGGTCCGGAGAAA 58.172 40.909 3.06 0.00 0.00 2.52
3962 5006 3.502123 ACAAATTGAAGGTCCGGAGAA 57.498 42.857 3.06 0.00 0.00 2.87
3963 5007 4.513442 CATACAAATTGAAGGTCCGGAGA 58.487 43.478 3.06 0.00 0.00 3.71
3964 5008 3.065371 GCATACAAATTGAAGGTCCGGAG 59.935 47.826 3.06 0.00 0.00 4.63
3967 5011 4.082787 ACAAGCATACAAATTGAAGGTCCG 60.083 41.667 0.00 0.00 0.00 4.79
3968 5012 5.048083 TGACAAGCATACAAATTGAAGGTCC 60.048 40.000 0.00 0.00 0.00 4.46
3969 5013 6.012658 TGACAAGCATACAAATTGAAGGTC 57.987 37.500 0.00 0.00 0.00 3.85
3971 5015 5.343058 CGTTGACAAGCATACAAATTGAAGG 59.657 40.000 0.00 0.00 0.00 3.46
3972 5016 5.914635 ACGTTGACAAGCATACAAATTGAAG 59.085 36.000 0.00 0.00 0.00 3.02
3973 5017 5.685068 CACGTTGACAAGCATACAAATTGAA 59.315 36.000 0.00 0.00 0.00 2.69
3975 5019 4.382457 CCACGTTGACAAGCATACAAATTG 59.618 41.667 0.00 0.00 0.00 2.32
3976 5020 4.545610 CCACGTTGACAAGCATACAAATT 58.454 39.130 0.00 0.00 0.00 1.82
3977 5021 3.611530 GCCACGTTGACAAGCATACAAAT 60.612 43.478 0.00 0.00 0.00 2.32
3978 5022 2.287308 GCCACGTTGACAAGCATACAAA 60.287 45.455 0.00 0.00 0.00 2.83
3979 5023 1.265635 GCCACGTTGACAAGCATACAA 59.734 47.619 0.00 0.00 0.00 2.41
3980 5024 0.871722 GCCACGTTGACAAGCATACA 59.128 50.000 0.00 0.00 0.00 2.29
3981 5025 0.871722 TGCCACGTTGACAAGCATAC 59.128 50.000 0.00 0.00 0.00 2.39
3985 5029 4.614673 CTTGCCACGTTGACAAGC 57.385 55.556 8.53 0.00 34.90 4.01
3986 5030 0.100325 TTGCTTGCCACGTTGACAAG 59.900 50.000 14.59 14.59 42.90 3.16
3987 5031 0.743688 ATTGCTTGCCACGTTGACAA 59.256 45.000 0.00 0.00 0.00 3.18
3989 5033 0.310543 TCATTGCTTGCCACGTTGAC 59.689 50.000 0.00 0.00 0.00 3.18
3990 5034 1.001487 CTTCATTGCTTGCCACGTTGA 60.001 47.619 0.00 0.00 0.00 3.18
3991 5035 1.269206 ACTTCATTGCTTGCCACGTTG 60.269 47.619 0.00 0.00 0.00 4.10
3994 5038 1.535028 TGTACTTCATTGCTTGCCACG 59.465 47.619 0.00 0.00 0.00 4.94
3995 5039 3.191162 TGATGTACTTCATTGCTTGCCAC 59.809 43.478 7.33 0.00 36.83 5.01
3996 5040 3.419943 TGATGTACTTCATTGCTTGCCA 58.580 40.909 7.33 0.00 36.83 4.92
3997 5041 4.168760 GTTGATGTACTTCATTGCTTGCC 58.831 43.478 11.84 0.00 36.83 4.52
3999 5043 6.207928 TGTTGTTGATGTACTTCATTGCTTG 58.792 36.000 11.84 0.00 36.83 4.01
4000 5044 6.389830 TGTTGTTGATGTACTTCATTGCTT 57.610 33.333 11.84 0.00 36.83 3.91
4001 5045 6.432162 AGATGTTGTTGATGTACTTCATTGCT 59.568 34.615 11.84 2.04 36.83 3.91
4002 5046 6.615088 AGATGTTGTTGATGTACTTCATTGC 58.385 36.000 11.84 6.84 36.83 3.56
4003 5047 8.077991 ACAAGATGTTGTTGATGTACTTCATTG 58.922 33.333 11.84 12.14 45.00 2.82
4004 5048 8.169977 ACAAGATGTTGTTGATGTACTTCATT 57.830 30.769 11.84 0.00 45.00 2.57
4005 5049 7.750229 ACAAGATGTTGTTGATGTACTTCAT 57.250 32.000 11.84 0.00 45.00 2.57
4006 5050 8.556194 GTTACAAGATGTTGTTGATGTACTTCA 58.444 33.333 14.05 7.33 45.00 3.02
4007 5051 8.556194 TGTTACAAGATGTTGTTGATGTACTTC 58.444 33.333 14.05 1.85 45.00 3.01
4008 5052 8.342634 GTGTTACAAGATGTTGTTGATGTACTT 58.657 33.333 14.05 0.00 45.00 2.24
4010 5054 6.790350 CGTGTTACAAGATGTTGTTGATGTAC 59.210 38.462 14.05 4.78 45.00 2.90
4011 5055 6.073494 CCGTGTTACAAGATGTTGTTGATGTA 60.073 38.462 14.05 0.00 45.00 2.29
4012 5056 5.277779 CCGTGTTACAAGATGTTGTTGATGT 60.278 40.000 14.05 0.00 45.00 3.06
4013 5057 5.146460 CCGTGTTACAAGATGTTGTTGATG 58.854 41.667 14.05 4.00 45.00 3.07
4016 5060 3.562141 TCCCGTGTTACAAGATGTTGTTG 59.438 43.478 14.05 0.00 45.00 3.33
4020 5064 4.504858 GAGATCCCGTGTTACAAGATGTT 58.495 43.478 0.00 0.00 0.00 2.71
4021 5065 3.118738 GGAGATCCCGTGTTACAAGATGT 60.119 47.826 0.00 0.00 0.00 3.06
4022 5066 3.118775 TGGAGATCCCGTGTTACAAGATG 60.119 47.826 0.00 0.00 37.93 2.90
4023 5067 3.104512 TGGAGATCCCGTGTTACAAGAT 58.895 45.455 0.00 0.00 37.93 2.40
4024 5068 2.496070 CTGGAGATCCCGTGTTACAAGA 59.504 50.000 0.00 0.00 37.93 3.02
4025 5069 2.496070 TCTGGAGATCCCGTGTTACAAG 59.504 50.000 0.00 0.00 37.93 3.16
4026 5070 2.531771 TCTGGAGATCCCGTGTTACAA 58.468 47.619 0.00 0.00 37.93 2.41
4027 5071 2.225382 TCTGGAGATCCCGTGTTACA 57.775 50.000 0.00 0.00 37.93 2.41
4028 5072 3.821421 ATTCTGGAGATCCCGTGTTAC 57.179 47.619 0.00 0.00 37.93 2.50
4029 5073 4.202223 GCTTATTCTGGAGATCCCGTGTTA 60.202 45.833 0.00 0.00 37.93 2.41
4031 5075 2.103263 GCTTATTCTGGAGATCCCGTGT 59.897 50.000 0.00 0.00 37.93 4.49
4033 5077 1.694696 GGCTTATTCTGGAGATCCCGT 59.305 52.381 0.00 0.00 37.93 5.28
4035 5079 1.002544 CCGGCTTATTCTGGAGATCCC 59.997 57.143 0.00 0.00 34.34 3.85
4036 5080 1.002544 CCCGGCTTATTCTGGAGATCC 59.997 57.143 0.00 0.00 34.34 3.36
4038 5082 0.398318 GCCCGGCTTATTCTGGAGAT 59.602 55.000 0.71 0.00 34.34 2.75
4040 5084 1.595382 CGCCCGGCTTATTCTGGAG 60.595 63.158 8.05 0.00 34.34 3.86
4041 5085 2.306255 GACGCCCGGCTTATTCTGGA 62.306 60.000 8.05 0.00 34.34 3.86
4042 5086 1.887707 GACGCCCGGCTTATTCTGG 60.888 63.158 8.05 0.00 0.00 3.86
4043 5087 1.887707 GGACGCCCGGCTTATTCTG 60.888 63.158 8.05 0.00 0.00 3.02
4044 5088 2.029307 GAGGACGCCCGGCTTATTCT 62.029 60.000 8.05 0.00 37.58 2.40
4045 5089 1.594564 GAGGACGCCCGGCTTATTC 60.595 63.158 8.05 0.00 37.58 1.75
4046 5090 2.504519 GAGGACGCCCGGCTTATT 59.495 61.111 8.05 0.00 37.58 1.40
4053 5097 2.300850 TTTATTCCCGAGGACGCCCG 62.301 60.000 0.00 0.00 38.29 6.13
4054 5098 0.812811 GTTTATTCCCGAGGACGCCC 60.813 60.000 0.00 0.00 38.29 6.13
4055 5099 0.108041 TGTTTATTCCCGAGGACGCC 60.108 55.000 0.00 0.00 38.29 5.68
4057 5101 2.864343 GACATGTTTATTCCCGAGGACG 59.136 50.000 0.00 0.00 39.43 4.79
4059 5103 2.841266 TGGACATGTTTATTCCCGAGGA 59.159 45.455 0.00 0.00 0.00 3.71
4060 5104 3.206150 CTGGACATGTTTATTCCCGAGG 58.794 50.000 0.00 0.00 0.00 4.63
4062 5106 2.639065 GCTGGACATGTTTATTCCCGA 58.361 47.619 0.00 0.00 0.00 5.14
4063 5107 1.330521 CGCTGGACATGTTTATTCCCG 59.669 52.381 0.00 0.00 0.00 5.14
4064 5108 1.065551 GCGCTGGACATGTTTATTCCC 59.934 52.381 0.00 0.00 0.00 3.97
4065 5109 1.065551 GGCGCTGGACATGTTTATTCC 59.934 52.381 7.64 0.00 0.00 3.01
4066 5110 1.742831 TGGCGCTGGACATGTTTATTC 59.257 47.619 7.64 0.00 0.00 1.75
4068 5112 1.382522 CTGGCGCTGGACATGTTTAT 58.617 50.000 7.64 0.00 0.00 1.40
4072 5116 4.025858 AGCTGGCGCTGGACATGT 62.026 61.111 7.64 0.00 46.86 3.21
4082 5126 3.758088 ATGCGACGAGTAGCTGGCG 62.758 63.158 0.00 0.00 32.26 5.69
4083 5127 1.946650 GATGCGACGAGTAGCTGGC 60.947 63.158 0.00 0.00 32.26 4.85
4085 5129 0.917259 GTTGATGCGACGAGTAGCTG 59.083 55.000 0.00 0.00 32.26 4.24
4086 5130 0.526211 TGTTGATGCGACGAGTAGCT 59.474 50.000 0.00 0.00 32.26 3.32
4087 5131 1.256376 CATGTTGATGCGACGAGTAGC 59.744 52.381 0.00 1.37 0.00 3.58
4088 5132 1.256376 GCATGTTGATGCGACGAGTAG 59.744 52.381 0.00 0.00 45.50 2.57
4089 5133 1.277326 GCATGTTGATGCGACGAGTA 58.723 50.000 0.00 0.00 45.50 2.59
4090 5134 2.081526 GCATGTTGATGCGACGAGT 58.918 52.632 0.00 0.00 45.50 4.18
4091 5135 4.961622 GCATGTTGATGCGACGAG 57.038 55.556 0.00 0.00 45.50 4.18
4098 5142 0.846015 TAGGGGAGGGCATGTTGATG 59.154 55.000 0.00 0.00 0.00 3.07
4099 5143 1.143813 CTAGGGGAGGGCATGTTGAT 58.856 55.000 0.00 0.00 0.00 2.57
4100 5144 0.988145 CCTAGGGGAGGGCATGTTGA 60.988 60.000 0.00 0.00 42.39 3.18
4101 5145 1.533711 CCTAGGGGAGGGCATGTTG 59.466 63.158 0.00 0.00 42.39 3.33
4102 5146 2.386935 GCCTAGGGGAGGGCATGTT 61.387 63.158 11.72 0.00 46.81 2.71
4103 5147 2.774351 GCCTAGGGGAGGGCATGT 60.774 66.667 11.72 0.00 46.81 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.