Multiple sequence alignment - TraesCS6D01G059500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G059500 chr6D 100.000 2267 0 0 727 2993 27845066 27847332 0.000000e+00 4187.0
1 TraesCS6D01G059500 chr6D 82.353 1207 150 29 1811 2993 28326642 28325475 0.000000e+00 990.0
2 TraesCS6D01G059500 chr6D 100.000 422 0 0 1 422 27844340 27844761 0.000000e+00 780.0
3 TraesCS6D01G059500 chr6D 82.419 802 102 17 2214 2993 27713271 27714055 0.000000e+00 664.0
4 TraesCS6D01G059500 chr6D 75.311 1126 238 25 1014 2124 28416004 28414904 1.240000e-138 503.0
5 TraesCS6D01G059500 chr6D 80.993 584 111 0 1014 1597 27683714 27683131 5.840000e-127 464.0
6 TraesCS6D01G059500 chr6D 81.502 546 83 13 1656 2200 27711724 27712252 1.650000e-117 433.0
7 TraesCS6D01G059500 chr6D 79.652 575 103 9 1011 1583 27711116 27711678 4.650000e-108 401.0
8 TraesCS6D01G059500 chr6D 72.765 962 200 42 997 1942 28411446 28410531 4.920000e-68 268.0
9 TraesCS6D01G059500 chr6D 82.192 146 24 2 2849 2993 29222299 29222443 1.130000e-24 124.0
10 TraesCS6D01G059500 chr6D 91.111 45 4 0 2392 2436 29933972 29934016 8.960000e-06 62.1
11 TraesCS6D01G059500 chr6A 93.827 2284 99 19 727 2993 30036727 30034469 0.000000e+00 3398.0
12 TraesCS6D01G059500 chr6A 82.255 603 102 4 996 1597 30422623 30423221 1.590000e-142 516.0
13 TraesCS6D01G059500 chr6A 88.036 443 30 5 3 422 30037491 30037049 1.240000e-138 503.0
14 TraesCS6D01G059500 chr6A 85.068 442 41 10 5 422 30132589 30132149 7.670000e-116 427.0
15 TraesCS6D01G059500 chr6A 80.812 271 38 9 1662 1931 30263337 30263080 1.820000e-47 200.0
16 TraesCS6D01G059500 chr6A 79.273 275 42 10 1662 1934 30282820 30282559 8.530000e-41 178.0
17 TraesCS6D01G059500 chr6A 82.482 137 20 2 2850 2985 33014770 33014637 1.890000e-22 117.0
18 TraesCS6D01G059500 chr6A 95.238 42 2 0 2395 2436 32795421 32795380 1.930000e-07 67.6
19 TraesCS6D01G059500 chr6B 91.957 1492 97 12 864 2343 51731959 51733439 0.000000e+00 2069.0
20 TraesCS6D01G059500 chr6B 92.384 604 41 1 2382 2985 51733434 51734032 0.000000e+00 856.0
21 TraesCS6D01G059500 chr6B 81.149 1114 140 31 1912 2993 52369487 52368412 0.000000e+00 830.0
22 TraesCS6D01G059500 chr6B 80.233 602 112 5 998 1597 51435778 51435182 2.120000e-121 446.0
23 TraesCS6D01G059500 chr6B 72.847 987 196 55 1011 1958 75671089 75670136 3.800000e-69 272.0
24 TraesCS6D01G059500 chr6B 78.802 217 31 4 2778 2993 60088525 60088323 6.730000e-27 132.0
25 TraesCS6D01G059500 chr6B 77.255 255 34 15 2734 2985 59827174 59826941 8.710000e-26 128.0
26 TraesCS6D01G059500 chr6B 80.645 155 26 4 1787 1939 76152652 76152500 1.890000e-22 117.0
27 TraesCS6D01G059500 chr6B 81.081 148 26 2 2847 2993 79299797 79299651 1.890000e-22 117.0
28 TraesCS6D01G059500 chr6B 73.276 348 77 12 1796 2139 51332816 51332481 2.440000e-21 113.0
29 TraesCS6D01G059500 chr6B 82.609 92 14 2 1656 1746 51538607 51538697 2.470000e-11 80.5
30 TraesCS6D01G059500 chr1B 81.166 446 54 10 5 421 573580388 573579944 6.180000e-87 331.0
31 TraesCS6D01G059500 chr1D 80.804 448 58 17 1 421 387422927 387422481 2.880000e-85 326.0
32 TraesCS6D01G059500 chr4B 79.733 449 62 14 1 421 666299035 666298588 6.270000e-77 298.0
33 TraesCS6D01G059500 chr4B 78.472 144 30 1 60 202 98701958 98701815 3.180000e-15 93.5
34 TraesCS6D01G059500 chrUn 79.510 449 63 14 1 421 195603253 195603700 2.920000e-75 292.0
35 TraesCS6D01G059500 chrUn 72.594 956 211 37 1014 1939 112304481 112303547 1.770000e-67 267.0
36 TraesCS6D01G059500 chrUn 75.510 490 100 17 1014 1493 112931953 112932432 3.880000e-54 222.0
37 TraesCS6D01G059500 chrUn 86.667 195 22 2 1017 1208 95016350 95016543 2.340000e-51 213.0
38 TraesCS6D01G059500 chrUn 83.125 160 25 2 1791 1949 102521823 102521665 8.650000e-31 145.0
39 TraesCS6D01G059500 chrUn 86.047 129 12 5 1817 1942 286651019 286650894 1.870000e-27 134.0
40 TraesCS6D01G059500 chrUn 73.697 403 79 20 1 386 358446019 358445627 6.730000e-27 132.0
41 TraesCS6D01G059500 chrUn 72.336 441 95 18 1706 2138 27039289 27039710 2.440000e-21 113.0
42 TraesCS6D01G059500 chr7D 87.940 199 19 3 228 421 226461293 226461095 2.320000e-56 230.0
43 TraesCS6D01G059500 chr7B 77.252 444 64 18 1 413 144113536 144113099 3.000000e-55 226.0
44 TraesCS6D01G059500 chr7B 81.250 144 25 2 60 202 738093430 738093572 6.780000e-22 115.0
45 TraesCS6D01G059500 chr7B 76.585 205 42 6 1 202 650552133 650552334 1.130000e-19 108.0
46 TraesCS6D01G059500 chr2B 84.259 216 28 3 211 421 3297146 3297360 3.910000e-49 206.0
47 TraesCS6D01G059500 chr5D 76.402 428 70 18 1 399 549551525 549551950 5.060000e-48 202.0
48 TraesCS6D01G059500 chr3D 75.529 425 76 14 1 399 67034793 67035215 1.830000e-42 183.0
49 TraesCS6D01G059500 chr2A 77.273 330 59 12 1019 1340 14890049 14889728 2.370000e-41 180.0
50 TraesCS6D01G059500 chr7A 83.333 120 17 3 85 202 683505560 683505442 1.130000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G059500 chr6D 27844340 27847332 2992 False 2483.500000 4187 100.0000 1 2993 2 chr6D.!!$F4 2992
1 TraesCS6D01G059500 chr6D 28325475 28326642 1167 True 990.000000 990 82.3530 1811 2993 1 chr6D.!!$R2 1182
2 TraesCS6D01G059500 chr6D 27711116 27714055 2939 False 499.333333 664 81.1910 1011 2993 3 chr6D.!!$F3 1982
3 TraesCS6D01G059500 chr6D 27683131 27683714 583 True 464.000000 464 80.9930 1014 1597 1 chr6D.!!$R1 583
4 TraesCS6D01G059500 chr6D 28410531 28416004 5473 True 385.500000 503 74.0380 997 2124 2 chr6D.!!$R3 1127
5 TraesCS6D01G059500 chr6A 30034469 30037491 3022 True 1950.500000 3398 90.9315 3 2993 2 chr6A.!!$R6 2990
6 TraesCS6D01G059500 chr6A 30422623 30423221 598 False 516.000000 516 82.2550 996 1597 1 chr6A.!!$F1 601
7 TraesCS6D01G059500 chr6B 51731959 51734032 2073 False 1462.500000 2069 92.1705 864 2985 2 chr6B.!!$F2 2121
8 TraesCS6D01G059500 chr6B 52368412 52369487 1075 True 830.000000 830 81.1490 1912 2993 1 chr6B.!!$R3 1081
9 TraesCS6D01G059500 chr6B 51435182 51435778 596 True 446.000000 446 80.2330 998 1597 1 chr6B.!!$R2 599
10 TraesCS6D01G059500 chr6B 75670136 75671089 953 True 272.000000 272 72.8470 1011 1958 1 chr6B.!!$R6 947
11 TraesCS6D01G059500 chrUn 112303547 112304481 934 True 267.000000 267 72.5940 1014 1939 1 chrUn.!!$R2 925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 380 0.036010 AGAAGAAGCACCACCATCCG 60.036 55.000 0.00 0.0 0.00 4.18 F
932 992 0.249489 CTTATCGTGGGCTTCCTCCG 60.249 60.000 0.00 0.0 0.00 4.63 F
1009 1074 1.064946 GACAGCGAGATGTCTCCGG 59.935 63.158 13.49 0.0 45.03 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 1982 1.196911 CCCCATGATGCAACACCATT 58.803 50.0 0.00 0.0 0.0 3.16 R
1972 2081 1.200519 TATTGTACTCGGCAAGCCCT 58.799 50.0 5.34 0.0 0.0 5.19 R
2158 2291 1.254026 TCCGGACAGAACACTACAGG 58.746 55.0 0.00 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.868498 TCCATGAACAACCGAAACGAC 59.132 47.619 0.00 0.00 0.00 4.34
55 56 1.511318 CCGAAACGACCATTGCCACA 61.511 55.000 0.00 0.00 0.00 4.17
70 71 1.488957 CACAGCAAGAACGAGTCGC 59.511 57.895 13.59 0.00 0.00 5.19
71 72 0.941463 CACAGCAAGAACGAGTCGCT 60.941 55.000 13.59 0.00 0.00 4.93
97 98 2.029666 GCTGTCGCCGCTCCATAT 59.970 61.111 0.00 0.00 0.00 1.78
116 117 0.537188 TCGGAGCCAGATTGACCTTC 59.463 55.000 0.00 0.00 0.00 3.46
119 120 1.472376 GGAGCCAGATTGACCTTCTCG 60.472 57.143 0.00 0.00 0.00 4.04
134 135 0.173481 TCTCGATGACAGCCGGAAAG 59.827 55.000 5.05 0.00 0.00 2.62
146 147 0.041312 CCGGAAAGTCTTTGTGCACG 60.041 55.000 13.13 0.00 0.00 5.34
152 153 0.178068 AGTCTTTGTGCACGTGTCCT 59.822 50.000 18.38 2.27 0.00 3.85
206 207 4.436332 GCCATTGAACCCTTGAATCAATC 58.564 43.478 0.00 0.00 40.75 2.67
207 208 4.675510 CCATTGAACCCTTGAATCAATCG 58.324 43.478 0.00 0.00 40.75 3.34
209 210 2.091541 TGAACCCTTGAATCAATCGGC 58.908 47.619 8.62 0.00 0.00 5.54
210 211 1.405463 GAACCCTTGAATCAATCGGCC 59.595 52.381 8.62 0.00 0.00 6.13
212 213 0.748005 CCCTTGAATCAATCGGCCGT 60.748 55.000 27.15 10.00 0.00 5.68
213 214 1.094785 CCTTGAATCAATCGGCCGTT 58.905 50.000 27.15 15.26 0.00 4.44
214 215 1.202177 CCTTGAATCAATCGGCCGTTG 60.202 52.381 27.15 25.91 0.00 4.10
216 217 0.957888 TGAATCAATCGGCCGTTGCA 60.958 50.000 27.15 17.33 40.13 4.08
217 218 0.381801 GAATCAATCGGCCGTTGCAT 59.618 50.000 27.15 18.22 40.13 3.96
218 219 1.601903 GAATCAATCGGCCGTTGCATA 59.398 47.619 27.15 12.89 40.13 3.14
245 268 0.245539 CGAGAAACCCTAACCTCGCA 59.754 55.000 0.00 0.00 41.31 5.10
246 269 1.736032 CGAGAAACCCTAACCTCGCAG 60.736 57.143 0.00 0.00 41.31 5.18
267 291 1.227497 CCGAGGAGCTGCAGGAATC 60.227 63.158 17.12 0.00 0.00 2.52
292 316 1.983972 CGGAGCTATGTCTAATCCGC 58.016 55.000 0.00 0.00 45.47 5.54
299 323 1.046472 ATGTCTAATCCGCCCCGACA 61.046 55.000 0.00 0.00 38.75 4.35
319 343 4.254492 ACAAAGAAACTTAGGATCGGAGC 58.746 43.478 0.00 0.00 0.00 4.70
320 344 3.545366 AAGAAACTTAGGATCGGAGCC 57.455 47.619 3.56 3.56 0.00 4.70
349 373 1.686587 TGACTCGAAGAAGAAGCACCA 59.313 47.619 0.00 0.00 34.09 4.17
356 380 0.036010 AGAAGAAGCACCACCATCCG 60.036 55.000 0.00 0.00 0.00 4.18
358 382 0.321653 AAGAAGCACCACCATCCGTC 60.322 55.000 0.00 0.00 0.00 4.79
374 398 2.046314 TCTAAGCGCCACCCTTGC 60.046 61.111 2.29 0.00 0.00 4.01
402 426 7.622479 AGAACTAAAACCCTACCTATCTAAGCA 59.378 37.037 0.00 0.00 0.00 3.91
756 797 7.332182 ACTTCTCAATTAGTGATTTCGGAACTC 59.668 37.037 1.47 1.47 35.07 3.01
757 798 6.936279 TCTCAATTAGTGATTTCGGAACTCT 58.064 36.000 9.16 0.24 35.07 3.24
785 826 4.538746 ACCCTAGAGGAAACTTTTCTCG 57.461 45.455 4.43 0.00 44.43 4.04
932 992 0.249489 CTTATCGTGGGCTTCCTCCG 60.249 60.000 0.00 0.00 0.00 4.63
958 1018 1.136305 CTTTCGATCTCGCCCCAACTA 59.864 52.381 0.00 0.00 39.60 2.24
993 1058 2.179517 CGCACGACCTCTGAGGAC 59.820 66.667 29.71 22.01 37.67 3.85
1009 1074 1.064946 GACAGCGAGATGTCTCCGG 59.935 63.158 13.49 0.00 45.03 5.14
1071 1136 4.924187 ATCCTCCTCCGCCTCCCG 62.924 72.222 0.00 0.00 0.00 5.14
1091 1156 3.415087 GCTGCCATCCACCCTCCT 61.415 66.667 0.00 0.00 0.00 3.69
1315 1380 4.316823 ACTCCTGGGTCCTCGGCA 62.317 66.667 0.00 0.00 0.00 5.69
1733 1839 3.416156 AGTTTGATTTGGAGAGGCAGAC 58.584 45.455 0.00 0.00 0.00 3.51
1935 2041 2.711547 ACTGGACAAGCTACTTTCCCTT 59.288 45.455 0.00 0.00 0.00 3.95
1972 2081 2.912956 AGAGTGCAACCCCTGATAGAAA 59.087 45.455 0.00 0.00 37.80 2.52
2129 2248 5.129485 AGTGTGTATTCTGCAGGTAATAGCT 59.871 40.000 15.13 0.00 0.00 3.32
2158 2291 9.859692 GCCTTTATAACGTATAATGAAGTTGTC 57.140 33.333 0.00 0.00 31.27 3.18
2183 2316 1.072331 AGTGTTCTGTCCGGATGCTTT 59.928 47.619 7.81 0.00 0.00 3.51
2353 4545 2.150397 ACAGGAAGCGACTAACACAC 57.850 50.000 0.00 0.00 0.00 3.82
2372 4564 8.752005 AACACACCAAATACATAGCTCAATAT 57.248 30.769 0.00 0.00 0.00 1.28
2539 5456 2.666317 GCTAGGTGGGTGCCATATTTT 58.334 47.619 0.00 0.00 35.28 1.82
2559 5476 2.363788 TCATCCGAAGTCTGAAACGG 57.636 50.000 10.64 10.64 45.61 4.44
2680 5947 4.765273 TCCTACGAGCTTTGCATGATTTA 58.235 39.130 0.00 0.00 0.00 1.40
2845 6412 6.431543 TGGTTGTTTGAGTGTTTGACTTCTTA 59.568 34.615 0.00 0.00 33.83 2.10
2846 6413 7.122055 TGGTTGTTTGAGTGTTTGACTTCTTAT 59.878 33.333 0.00 0.00 33.83 1.73
2847 6414 8.617809 GGTTGTTTGAGTGTTTGACTTCTTATA 58.382 33.333 0.00 0.00 33.83 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.545208 TGTTCATGGACCTCGATGTAAA 57.455 40.909 0.46 0.00 34.32 2.01
55 56 0.664767 GTCAGCGACTCGTTCTTGCT 60.665 55.000 0.00 0.00 36.05 3.91
97 98 0.537188 GAAGGTCAATCTGGCTCCGA 59.463 55.000 0.00 0.00 0.00 4.55
106 107 2.863137 GCTGTCATCGAGAAGGTCAATC 59.137 50.000 0.00 0.00 0.00 2.67
116 117 0.108615 ACTTTCCGGCTGTCATCGAG 60.109 55.000 0.00 0.00 0.00 4.04
119 120 2.100605 AAGACTTTCCGGCTGTCATC 57.899 50.000 18.54 3.83 33.56 2.92
134 135 1.014352 AAGGACACGTGCACAAAGAC 58.986 50.000 17.22 5.92 0.00 3.01
214 215 2.032178 GGGTTTCTCGTCATGCTTATGC 59.968 50.000 0.00 0.00 40.20 3.14
216 217 3.914426 AGGGTTTCTCGTCATGCTTAT 57.086 42.857 0.00 0.00 0.00 1.73
217 218 4.501071 GTTAGGGTTTCTCGTCATGCTTA 58.499 43.478 0.00 0.00 0.00 3.09
218 219 3.335579 GTTAGGGTTTCTCGTCATGCTT 58.664 45.455 0.00 0.00 0.00 3.91
227 250 2.007547 GCTGCGAGGTTAGGGTTTCTC 61.008 57.143 0.00 0.00 0.00 2.87
255 278 1.144936 GGCGTAGATTCCTGCAGCT 59.855 57.895 8.66 2.11 0.00 4.24
267 291 1.520494 TAGACATAGCTCCGGCGTAG 58.480 55.000 6.01 0.00 44.37 3.51
292 316 3.412237 TCCTAAGTTTCTTTGTCGGGG 57.588 47.619 0.00 0.00 0.00 5.73
299 323 3.370633 GGGCTCCGATCCTAAGTTTCTTT 60.371 47.826 0.00 0.00 0.00 2.52
319 343 0.171455 CTTCGAGTCAGTCTTCCGGG 59.829 60.000 0.00 0.00 0.00 5.73
320 344 1.166129 TCTTCGAGTCAGTCTTCCGG 58.834 55.000 0.00 0.00 0.00 5.14
349 373 2.355986 TGGCGCTTAGACGGATGGT 61.356 57.895 7.64 0.00 0.00 3.55
356 380 2.399356 GCAAGGGTGGCGCTTAGAC 61.399 63.158 7.64 0.00 34.91 2.59
374 398 6.712179 AGATAGGTAGGGTTTTAGTTCTCG 57.288 41.667 0.00 0.00 0.00 4.04
402 426 0.988678 GGGGTATTCCTGGTGCCTCT 60.989 60.000 0.00 0.00 35.33 3.69
757 798 8.364449 AGAAAAGTTTCCTCTAGGGTTTCCCTA 61.364 40.741 13.14 13.14 44.44 3.53
797 839 8.117813 ACGACACAGGGAATTAACAATTAATT 57.882 30.769 6.31 6.31 45.73 1.40
862 911 3.555966 TGCCTCGTCTTCTCATCATCTA 58.444 45.455 0.00 0.00 0.00 1.98
902 951 3.518590 CCCACGATAAGTACACAGAACC 58.481 50.000 0.00 0.00 0.00 3.62
903 952 2.928116 GCCCACGATAAGTACACAGAAC 59.072 50.000 0.00 0.00 0.00 3.01
904 953 2.829720 AGCCCACGATAAGTACACAGAA 59.170 45.455 0.00 0.00 0.00 3.02
906 955 2.961526 AGCCCACGATAAGTACACAG 57.038 50.000 0.00 0.00 0.00 3.66
908 957 2.167900 AGGAAGCCCACGATAAGTACAC 59.832 50.000 0.00 0.00 33.88 2.90
910 959 2.223994 GGAGGAAGCCCACGATAAGTAC 60.224 54.545 0.00 0.00 33.88 2.73
932 992 1.706287 GGCGAGATCGAAAGCCCAAC 61.706 60.000 6.39 0.00 43.54 3.77
983 1043 0.385029 CATCTCGCTGTCCTCAGAGG 59.615 60.000 10.70 10.70 43.76 3.69
993 1058 2.279120 GCCGGAGACATCTCGCTG 60.279 66.667 5.05 0.00 43.76 5.18
1275 1340 2.089349 GGTCTCGTCGAGCTGCAAC 61.089 63.158 17.61 9.67 37.18 4.17
1398 1463 4.242602 CCTGGGGGAAAAGCGATC 57.757 61.111 0.00 0.00 33.58 3.69
1733 1839 3.832490 TGGTATTCGGATCACATCTAGGG 59.168 47.826 0.00 0.00 0.00 3.53
1803 1909 3.330720 CCCAGTCCACCACCCTCC 61.331 72.222 0.00 0.00 0.00 4.30
1876 1982 1.196911 CCCCATGATGCAACACCATT 58.803 50.000 0.00 0.00 0.00 3.16
1935 2041 3.957497 GCACTCTCTCCTTCTCTGGATTA 59.043 47.826 0.00 0.00 35.30 1.75
1972 2081 1.200519 TATTGTACTCGGCAAGCCCT 58.799 50.000 5.34 0.00 0.00 5.19
2158 2291 1.254026 TCCGGACAGAACACTACAGG 58.746 55.000 0.00 0.00 0.00 4.00
2261 3466 5.278758 CGGAATATTCAAAACAACACCACCT 60.279 40.000 17.07 0.00 0.00 4.00
2326 4518 6.421801 GTGTTAGTCGCTTCCTGTTAGTTTTA 59.578 38.462 0.00 0.00 0.00 1.52
2372 4564 5.825679 ACACAAGTAAGCTTCCAAATGTACA 59.174 36.000 0.00 0.00 31.49 2.90
2499 5414 2.632512 GCCCTTGAAAAATGTTCCTGGA 59.367 45.455 0.00 0.00 0.00 3.86
2539 5456 2.297880 TCCGTTTCAGACTTCGGATGAA 59.702 45.455 0.97 0.00 45.49 2.57
2643 5908 5.353394 TCGTAGGAATGGCAAGTTAGAAT 57.647 39.130 0.00 0.00 0.00 2.40
2845 6412 4.283467 TGCTCGTCCCTACAAGCATAATAT 59.717 41.667 0.00 0.00 0.00 1.28
2846 6413 3.639561 TGCTCGTCCCTACAAGCATAATA 59.360 43.478 0.00 0.00 0.00 0.98
2847 6414 2.434336 TGCTCGTCCCTACAAGCATAAT 59.566 45.455 0.00 0.00 0.00 1.28
2848 6415 1.828595 TGCTCGTCCCTACAAGCATAA 59.171 47.619 0.00 0.00 0.00 1.90
2849 6416 1.480789 TGCTCGTCCCTACAAGCATA 58.519 50.000 0.00 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.