AutoCloner

Multiple sequence alignment - TraesCS6D01G058900

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BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G058900	chr6D	100.000	7242	0	0	1	7242	27684567	27691808	0.000000e+00	13374.0
1	TraesCS6D01G058900	chr6D	97.565	3902	67	4	1242	5141	78817962	78814087	0.000000e+00	6654.0
2	TraesCS6D01G058900	chr6D	97.493	3909	64	5	1242	5141	381379836	381375953	0.000000e+00	6645.0
3	TraesCS6D01G058900	chr6D	96.727	3911	67	10	1242	5141	353631863	353628003	0.000000e+00	6457.0
4	TraesCS6D01G058900	chr6D	96.478	3918	89	23	1240	5141	262278747	262282631	0.000000e+00	6425.0
5	TraesCS6D01G058900	chr6D	97.627	2739	51	6	2412	5141	388516831	388519564	0.000000e+00	4686.0
6	TraesCS6D01G058900	chr6D	89.692	1785	133	36	1242	3004	315130554	315132309	0.000000e+00	2230.0
7	TraesCS6D01G058900	chr6D	98.020	404	7	1	5135	5537	27687164	27687567	0.000000e+00	701.0
8	TraesCS6D01G058900	chr6D	97.250	400	10	1	5138	5536	78796940	78796541	0.000000e+00	676.0
9	TraesCS6D01G058900	chr6D	97.007	401	11	1	5138	5537	78816627	78816227	0.000000e+00	673.0
10	TraesCS6D01G058900	chr6D	97.442	391	10	0	5147	5537	91504766	91504376	0.000000e+00	667.0
11	TraesCS6D01G058900	chr6D	97.187	391	10	1	5147	5536	78328018	78328408	0.000000e+00	660.0
12	TraesCS6D01G058900	chr6D	96.020	402	14	2	5138	5537	381378501	381378100	0.000000e+00	652.0
13	TraesCS6D01G058900	chr6D	93.267	401	17	4	341	735	441785875	441785479	3.770000e-162	582.0
14	TraesCS6D01G058900	chr1D	97.416	3909	64	8	1242	5141	427611975	427608095	0.000000e+00	6625.0
15	TraesCS6D01G058900	chr1D	97.241	3914	70	8	1240	5141	77021987	77025874	0.000000e+00	6595.0
16	TraesCS6D01G058900	chr1D	96.720	3903	80	12	1242	5141	457014722	457010865	0.000000e+00	6455.0
17	TraesCS6D01G058900	chr1D	96.879	1762	27	10	1242	3001	401114188	401112453	0.000000e+00	2924.0
18	TraesCS6D01G058900	chr1D	96.752	1324	17	8	1242	2564	440458673	440457375	0.000000e+00	2183.0
19	TraesCS6D01G058900	chr1D	92.697	712	52	0	5537	6248	339343158	339343869	0.000000e+00	1027.0
20	TraesCS6D01G058900	chr1D	96.957	460	14	0	6783	7242	339349827	339350286	0.000000e+00	773.0
21	TraesCS6D01G058900	chr1D	97.949	390	8	0	5147	5536	487060938	487060549	0.000000e+00	676.0
22	TraesCS6D01G058900	chr1D	92.531	482	16	6	6292	6761	339349064	339349537	0.000000e+00	673.0
23	TraesCS6D01G058900	chr1D	97.187	391	9	2	5147	5536	34037998	34038387	0.000000e+00	660.0
24	TraesCS6D01G058900	chr1D	96.931	391	11	1	5147	5536	400846094	400846484	0.000000e+00	654.0
25	TraesCS6D01G058900	chr1D	96.931	391	11	1	5147	5537	427610630	427610241	0.000000e+00	654.0
26	TraesCS6D01G058900	chr1D	96.020	402	14	2	5138	5537	401119857	401119456	0.000000e+00	652.0
27	TraesCS6D01G058900	chr1D	95.792	404	15	2	5135	5536	196930272	196930675	0.000000e+00	651.0
28	TraesCS6D01G058900	chr1D	96.231	398	14	1	5140	5536	217052898	217053295	0.000000e+00	651.0
29	TraesCS6D01G058900	chr1D	96.684	392	12	1	5147	5537	228587556	228587165	0.000000e+00	651.0
30	TraesCS6D01G058900	chr1D	95.761	401	15	2	5138	5536	440452290	440451890	0.000000e+00	645.0
31	TraesCS6D01G058900	chr1D	95.320	406	16	3	5138	5540	401112854	401112449	6.130000e-180	641.0
32	TraesCS6D01G058900	chr7D	97.339	3908	69	12	1242	5141	77391719	77387839	0.000000e+00	6608.0
33	TraesCS6D01G058900	chr7D	97.388	1761	19	9	1242	3000	567644871	567646606	0.000000e+00	2972.0
34	TraesCS6D01G058900	chr7D	93.850	1252	54	5	5537	6766	261861669	261860419	0.000000e+00	1864.0
35	TraesCS6D01G058900	chr7D	98.043	460	7	1	6783	7242	261860145	261859688	0.000000e+00	798.0
36	TraesCS6D01G058900	chr7D	97.015	402	10	2	5138	5537	567639192	567639593	0.000000e+00	675.0
37	TraesCS6D01G058900	chr7D	97.007	401	10	2	5138	5536	567646206	567646606	0.000000e+00	673.0
38	TraesCS6D01G058900	chr7D	96.758	401	12	1	5138	5537	77390385	77389985	0.000000e+00	667.0
39	TraesCS6D01G058900	chr7D	91.239	468	31	7	780	1242	261862126	261861664	4.770000e-176	628.0
40	TraesCS6D01G058900	chr7D	91.228	399	24	4	343	735	90635792	90635399	3.850000e-147	532.0
41	TraesCS6D01G058900	chr7D	95.000	320	10	2	422	735	532628811	532629130	1.400000e-136	497.0
42	TraesCS6D01G058900	chr7D	91.369	336	16	5	411	735	135438238	135438571	1.430000e-121	448.0
43	TraesCS6D01G058900	chr5D	97.315	3911	70	6	1241	5141	46298563	46294678	0.000000e+00	6608.0
44	TraesCS6D01G058900	chr5D	97.055	3463	64	8	1689	5141	224996515	224999949	0.000000e+00	5795.0
45	TraesCS6D01G058900	chr5D	92.314	1249	64	8	5537	6761	395682577	395683817	0.000000e+00	1746.0
46	TraesCS6D01G058900	chr5D	96.535	635	22	0	5537	6171	516814032	516813398	0.000000e+00	1051.0
47	TraesCS6D01G058900	chr5D	97.737	486	9	1	6279	6764	516813091	516812608	0.000000e+00	835.0
48	TraesCS6D01G058900	chr5D	98.043	460	9	0	6783	7242	516812315	516811856	0.000000e+00	800.0
49	TraesCS6D01G058900	chr5D	94.584	517	21	5	727	1242	516814537	516814027	0.000000e+00	793.0
50	TraesCS6D01G058900	chr5D	97.174	460	13	0	6783	7242	395684094	395684553	0.000000e+00	778.0
51	TraesCS6D01G058900	chr5D	97.698	391	9	0	5147	5537	464555725	464555335	0.000000e+00	673.0
52	TraesCS6D01G058900	chr5D	97.007	401	10	2	5138	5536	508306707	508306307	0.000000e+00	673.0
53	TraesCS6D01G058900	chr5D	96.500	400	12	2	5139	5536	267792734	267793133	0.000000e+00	660.0
54	TraesCS6D01G058900	chr5D	96.509	401	10	3	5138	5537	450885359	450885756	0.000000e+00	660.0
55	TraesCS6D01G058900	chr5D	92.308	403	17	6	343	735	549549736	549550134	1.760000e-155	560.0
56	TraesCS6D01G058900	chr5D	91.294	402	25	4	340	735	512220672	512221069	2.300000e-149	540.0
57	TraesCS6D01G058900	chr2D	96.652	3913	74	18	1241	5141	561493895	561497762	0.000000e+00	6447.0
58	TraesCS6D01G058900	chr2D	96.763	1761	28	9	1242	3000	561500918	561502651	0.000000e+00	2909.0
59	TraesCS6D01G058900	chr2D	94.217	1245	49	5	5537	6761	640775092	640776333	0.000000e+00	1879.0
60	TraesCS6D01G058900	chr2D	97.872	517	10	1	6245	6761	595447547	595448062	0.000000e+00	893.0
61	TraesCS6D01G058900	chr2D	95.472	508	16	3	735	1242	595446111	595446611	0.000000e+00	804.0
62	TraesCS6D01G058900	chr2D	98.205	390	7	0	5147	5536	634439979	634439590	0.000000e+00	682.0
63	TraesCS6D01G058900	chr2D	89.103	468	41	7	780	1242	504170448	504170910	2.270000e-159	573.0
64	TraesCS6D01G058900	chr2D	91.294	402	25	4	340	735	176586566	176586963	2.300000e-149	540.0
65	TraesCS6D01G058900	chr4D	95.687	1762	62	10	1244	3000	490110101	490108349	0.000000e+00	2820.0
66	TraesCS6D01G058900	chr4D	97.442	391	9	1	5147	5536	481188110	481187720	0.000000e+00	665.0
67	TraesCS6D01G058900	chr4D	97.194	392	10	1	5147	5537	481195345	481194954	0.000000e+00	662.0
68	TraesCS6D01G058900	chr4D	95.274	402	13	2	340	735	25384967	25384566	3.690000e-177	632.0
69	TraesCS6D01G058900	chr6A	95.582	1245	35	2	5537	6761	501184667	501185911	0.000000e+00	1977.0
70	TraesCS6D01G058900	chr6A	97.190	427	12	0	6816	7242	501186262	501186688	0.000000e+00	723.0
71	TraesCS6D01G058900	chr6A	90.177	509	31	5	735	1242	501184182	501184672	0.000000e+00	645.0
72	TraesCS6D01G058900	chr6A	93.333	105	7	0	179	283	30421940	30421836	9.730000e-34	156.0
73	TraesCS6D01G058900	chr6A	97.701	87	2	0	6783	6869	501186184	501186270	4.530000e-32	150.0
74	TraesCS6D01G058900	chr5A	95.032	1248	41	3	5537	6764	28709454	28708208	0.000000e+00	1941.0
75	TraesCS6D01G058900	chr5A	93.333	1035	44	11	5747	6761	604305905	604306934	0.000000e+00	1506.0
76	TraesCS6D01G058900	chr5A	97.391	460	12	0	6783	7242	604307207	604307666	0.000000e+00	784.0
77	TraesCS6D01G058900	chr5A	96.957	460	14	0	6783	7242	28707915	28707456	0.000000e+00	773.0
78	TraesCS6D01G058900	chr5A	95.238	483	22	1	761	1242	28709931	28709449	0.000000e+00	763.0
79	TraesCS6D01G058900	chr5A	91.699	518	33	5	735	1242	604296176	604296693	0.000000e+00	710.0
80	TraesCS6D01G058900	chr2A	94.000	1250	49	12	5537	6764	508071278	508070033	0.000000e+00	1869.0
81	TraesCS6D01G058900	chr2A	97.174	460	13	0	6783	7242	508069763	508069304	0.000000e+00	778.0
82	TraesCS6D01G058900	chr2A	90.766	509	29	4	735	1242	508071764	508071273	0.000000e+00	664.0
83	TraesCS6D01G058900	chr2A	93.689	206	9	2	735	939	508054040	508053838	9.130000e-79	305.0
84	TraesCS6D01G058900	chr1B	93.841	1234	65	5	5537	6761	346656550	346655319	0.000000e+00	1847.0
85	TraesCS6D01G058900	chr1B	97.826	460	10	0	6783	7242	346655023	346654564	0.000000e+00	795.0
86	TraesCS6D01G058900	chr1B	89.099	477	33	8	780	1242	346657016	346656545	6.300000e-160	575.0
87	TraesCS6D01G058900	chr1B	86.567	134	12	1	608	735	266932526	266932393	7.570000e-30	143.0
88	TraesCS6D01G058900	chrUn	92.578	1253	57	17	5537	6761	292711613	292712857	0.000000e+00	1766.0
89	TraesCS6D01G058900	chrUn	92.578	1253	57	17	5537	6761	292717082	292718326	0.000000e+00	1766.0
90	TraesCS6D01G058900	chrUn	92.516	1256	58	17	5537	6764	301275573	301274326	0.000000e+00	1766.0
91	TraesCS6D01G058900	chrUn	97.727	396	9	0	6786	7181	292713139	292713534	0.000000e+00	682.0
92	TraesCS6D01G058900	chrUn	97.727	396	9	0	6786	7181	292718608	292719003	0.000000e+00	682.0
93	TraesCS6D01G058900	chrUn	97.727	396	9	0	6786	7181	301274047	301273652	0.000000e+00	682.0
94	TraesCS6D01G058900	chrUn	95.771	402	15	2	5138	5537	79895796	79895395	0.000000e+00	647.0
95	TraesCS6D01G058900	chrUn	96.419	391	13	1	5147	5537	452568880	452568491	1.700000e-180	643.0
96	TraesCS6D01G058900	chrUn	95.750	400	14	3	5140	5537	104039521	104039919	6.130000e-180	641.0
97	TraesCS6D01G058900	chrUn	95.929	393	13	2	5147	5537	91807136	91807527	1.020000e-177	634.0
98	TraesCS6D01G058900	chrUn	95.918	392	14	2	5147	5537	104032506	104032896	1.020000e-177	634.0
99	TraesCS6D01G058900	chrUn	95.918	392	14	2	5147	5537	112876917	112877307	1.020000e-177	634.0
100	TraesCS6D01G058900	chrUn	95.908	391	14	2	5147	5536	46018156	46017767	3.690000e-177	632.0
101	TraesCS6D01G058900	chrUn	95.025	402	18	2	5138	5537	79902836	79902435	1.330000e-176	630.0
102	TraesCS6D01G058900	chrUn	95.663	392	15	2	5147	5537	20891942	20891552	4.770000e-176	628.0
103	TraesCS6D01G058900	chrUn	98.276	58	1	0	7185	7242	323356925	323356982	1.290000e-17	102.0
104	TraesCS6D01G058900	chr3B	91.367	1251	76	5	5537	6764	265880276	265879035	0.000000e+00	1683.0
105	TraesCS6D01G058900	chr3B	92.710	535	18	8	6245	6766	741333866	741333340	0.000000e+00	752.0
106	TraesCS6D01G058900	chr3B	95.217	460	22	0	6783	7242	741333021	741332562	0.000000e+00	728.0
107	TraesCS6D01G058900	chr3B	95.154	454	22	0	6783	7236	265878733	265878280	0.000000e+00	717.0
108	TraesCS6D01G058900	chr3B	87.970	133	10	2	609	735	670293248	670293380	1.260000e-32	152.0
109	TraesCS6D01G058900	chr3B	85.821	134	13	2	608	735	30496455	30496322	3.520000e-28	137.0
110	TraesCS6D01G058900	chr3B	80.240	167	27	2	575	735	743807457	743807623	3.550000e-23	121.0
111	TraesCS6D01G058900	chr3D	91.901	1173	62	8	5537	6685	568041871	568040708	0.000000e+00	1609.0
112	TraesCS6D01G058900	chr3D	89.474	1254	71	22	5537	6761	30636396	30637617	0.000000e+00	1528.0
113	TraesCS6D01G058900	chr3D	96.522	460	16	0	6783	7242	30637910	30638369	0.000000e+00	761.0
114	TraesCS6D01G058900	chr3D	97.959	392	8	0	5147	5538	453779987	453780378	0.000000e+00	680.0
115	TraesCS6D01G058900	chr3D	93.267	401	19	3	341	735	180622788	180622390	1.050000e-162	584.0
116	TraesCS6D01G058900	chr1A	88.889	1251	93	16	5537	6764	266741315	266740088	0.000000e+00	1498.0
117	TraesCS6D01G058900	chr1A	94.783	460	22	1	6783	7242	266739795	266739338	0.000000e+00	715.0
118	TraesCS6D01G058900	chr6B	96.957	460	14	0	6783	7242	661528222	661527763	0.000000e+00	773.0
119	TraesCS6D01G058900	chr6B	90.391	281	24	3	2	281	51439275	51439553	4.130000e-97	366.0
120	TraesCS6D01G058900	chr6B	86.175	217	27	2	1	217	51502294	51502507	1.570000e-56	231.0
121	TraesCS6D01G058900	chr6B	95.385	65	3	0	219	283	51502586	51502650	3.570000e-18	104.0
122	TraesCS6D01G058900	chr7B	96.950	459	13	1	6784	7242	337396373	337396830	0.000000e+00	769.0
123	TraesCS6D01G058900	chr5B	87.821	468	46	8	781	1242	322291890	322292352	8.270000e-149	538.0
124	TraesCS6D01G058900	chr5B	83.529	85	6	3	341	425	330819011	330819087	1.010000e-08	73.1
125	TraesCS6D01G058900	chr7A	93.893	262	14	2	735	995	645041081	645041341	1.890000e-105	394.0
126	TraesCS6D01G058900	chr2B	75.641	156	27	11	337	485	794227639	794227488	4.690000e-07	67.6
127	TraesCS6D01G058900	chr2B	75.641	156	27	10	337	485	794228370	794228219	4.690000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G058900	chr6D	27684567	27691808	7241	False	13374.000000	13374	100.000000	1	7242	1	chr6D.!!$F1	7241
1	TraesCS6D01G058900	chr6D	353628003	353631863	3860	True	6457.000000	6457	96.727000	1242	5141	1	chr6D.!!$R3	3899
2	TraesCS6D01G058900	chr6D	262278747	262282631	3884	False	6425.000000	6425	96.478000	1240	5141	1	chr6D.!!$F4	3901
3	TraesCS6D01G058900	chr6D	388516831	388519564	2733	False	4686.000000	4686	97.627000	2412	5141	1	chr6D.!!$F6	2729
4	TraesCS6D01G058900	chr6D	78814087	78817962	3875	True	3663.500000	6654	97.286000	1242	5537	2	chr6D.!!$R5	4295
5	TraesCS6D01G058900	chr6D	381375953	381379836	3883	True	3648.500000	6645	96.756500	1242	5537	2	chr6D.!!$R6	4295
6	TraesCS6D01G058900	chr6D	315130554	315132309	1755	False	2230.000000	2230	89.692000	1242	3004	1	chr6D.!!$F5	1762
7	TraesCS6D01G058900	chr1D	77021987	77025874	3887	False	6595.000000	6595	97.241000	1240	5141	1	chr1D.!!$F2	3901
8	TraesCS6D01G058900	chr1D	457010865	457014722	3857	True	6455.000000	6455	96.720000	1242	5141	1	chr1D.!!$R5	3899
9	TraesCS6D01G058900	chr1D	427608095	427611975	3880	True	3639.500000	6625	97.173500	1242	5537	2	chr1D.!!$R8	4295
10	TraesCS6D01G058900	chr1D	440457375	440458673	1298	True	2183.000000	2183	96.752000	1242	2564	1	chr1D.!!$R4	1322
11	TraesCS6D01G058900	chr1D	401112449	401114188	1739	True	1782.500000	2924	96.099500	1242	5540	2	chr1D.!!$R7	4298
12	TraesCS6D01G058900	chr1D	339343158	339343869	711	False	1027.000000	1027	92.697000	5537	6248	1	chr1D.!!$F5	711
13	TraesCS6D01G058900	chr1D	339349064	339350286	1222	False	723.000000	773	94.744000	6292	7242	2	chr1D.!!$F7	950
14	TraesCS6D01G058900	chr7D	77387839	77391719	3880	True	3637.500000	6608	97.048500	1242	5537	2	chr7D.!!$R2	4295
15	TraesCS6D01G058900	chr7D	567644871	567646606	1735	False	1822.500000	2972	97.197500	1242	5536	2	chr7D.!!$F4	4294
16	TraesCS6D01G058900	chr7D	261859688	261862126	2438	True	1096.666667	1864	94.377333	780	7242	3	chr7D.!!$R3	6462
17	TraesCS6D01G058900	chr5D	46294678	46298563	3885	True	6608.000000	6608	97.315000	1241	5141	1	chr5D.!!$R1	3900
18	TraesCS6D01G058900	chr5D	224996515	224999949	3434	False	5795.000000	5795	97.055000	1689	5141	1	chr5D.!!$F1	3452
19	TraesCS6D01G058900	chr5D	395682577	395684553	1976	False	1262.000000	1746	94.744000	5537	7242	2	chr5D.!!$F6	1705
20	TraesCS6D01G058900	chr5D	516811856	516814537	2681	True	869.750000	1051	96.724750	727	7242	4	chr5D.!!$R4	6515
21	TraesCS6D01G058900	chr2D	561493895	561502651	8756	False	4678.000000	6447	96.707500	1241	5141	2	chr2D.!!$F4	3900
22	TraesCS6D01G058900	chr2D	640775092	640776333	1241	False	1879.000000	1879	94.217000	5537	6761	1	chr2D.!!$F3	1224
23	TraesCS6D01G058900	chr2D	595446111	595448062	1951	False	848.500000	893	96.672000	735	6761	2	chr2D.!!$F5	6026
24	TraesCS6D01G058900	chr4D	490108349	490110101	1752	True	2820.000000	2820	95.687000	1244	3000	1	chr4D.!!$R4	1756
25	TraesCS6D01G058900	chr6A	501184182	501186688	2506	False	873.750000	1977	95.162500	735	7242	4	chr6A.!!$F1	6507
26	TraesCS6D01G058900	chr5A	28707456	28709931	2475	True	1159.000000	1941	95.742333	761	7242	3	chr5A.!!$R1	6481
27	TraesCS6D01G058900	chr5A	604305905	604307666	1761	False	1145.000000	1506	95.362000	5747	7242	2	chr5A.!!$F2	1495
28	TraesCS6D01G058900	chr5A	604296176	604296693	517	False	710.000000	710	91.699000	735	1242	1	chr5A.!!$F1	507
29	TraesCS6D01G058900	chr2A	508069304	508071764	2460	True	1103.666667	1869	93.980000	735	7242	3	chr2A.!!$R2	6507
30	TraesCS6D01G058900	chr1B	346654564	346657016	2452	True	1072.333333	1847	93.588667	780	7242	3	chr1B.!!$R2	6462
31	TraesCS6D01G058900	chrUn	292711613	292719003	7390	False	1224.000000	1766	95.152500	5537	7181	4	chrUn.!!$F6	1644
32	TraesCS6D01G058900	chrUn	301273652	301275573	1921	True	1224.000000	1766	95.121500	5537	7181	2	chrUn.!!$R6	1644
33	TraesCS6D01G058900	chr3B	265878280	265880276	1996	True	1200.000000	1683	93.260500	5537	7236	2	chr3B.!!$R2	1699
34	TraesCS6D01G058900	chr3B	741332562	741333866	1304	True	740.000000	752	93.963500	6245	7242	2	chr3B.!!$R3	997
35	TraesCS6D01G058900	chr3D	568040708	568041871	1163	True	1609.000000	1609	91.901000	5537	6685	1	chr3D.!!$R2	1148
36	TraesCS6D01G058900	chr3D	30636396	30638369	1973	False	1144.500000	1528	92.998000	5537	7242	2	chr3D.!!$F2	1705
37	TraesCS6D01G058900	chr1A	266739338	266741315	1977	True	1106.500000	1498	91.836000	5537	7242	2	chr1A.!!$R1	1705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
706	707	0.037882	CCGATCATCATCCCAGGACG	60.038	60.000	0.00	0.00	0.00	4.79	F
719	720	0.309302	CAGGACGACGCATCTCCTAG	59.691	60.000	4.58	0.00	33.32	3.02	F
961	984	0.755327	TATCAGCCACGCTAGCCTCA	60.755	55.000	9.66	0.00	36.40	3.86	F
989	1012	2.362397	AGAGCACGAACAAGAAGAGACA	59.638	45.455	0.00	0.00	0.00	3.41	F
3076	3182	0.168128	GTTGTGGGCGTAGATGTTGC	59.832	55.000	0.00	0.00	0.00	4.17	F
4127	4240	2.521126	TCACCGATGTTGACTAGTCCA	58.479	47.619	20.11	11.94	0.00	4.02	F
5314	9927	0.178929	AGGAGACGTCTTCCCCAACT	60.179	55.000	21.08	6.84	0.00	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2483	2568	0.778078	TCCCACCATTTCCCTTCCCA	60.778	55.000	0.00	0.00	0.00	4.37	R
3024	3130	6.072342	TGTTCTACTCGTGCATAGAAACTACA	60.072	38.462	8.67	2.28	38.74	2.74	R
3076	3182	4.642429	ACTAGTAGTGGCAAGAAAGTTGG	58.358	43.478	0.85	0.00	0.00	3.77	R
4104	4217	3.056749	GGACTAGTCAACATCGGTGAACT	60.057	47.826	23.91	5.52	0.00	3.01	R
5273	9886	0.332632	TTCTTGATCCAGCAAGGGGG	59.667	55.000	4.79	0.00	44.14	5.40	R
6226	16311	0.397816	ATCTTCAGGAGGAGGACGGG	60.398	60.000	0.00	0.00	34.05	5.28	R
6769	17118	0.583438	CCATAGCTGCAATTCCGTCG	59.417	55.000	1.02	0.00	0.00	5.12	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	2.472355	CTCTCAGAGGAAGCGACGA	58.528	57.895	0.00	0.00	0.00	4.20
25	26	0.376852	CTCTCAGAGGAAGCGACGAG	59.623	60.000	0.00	0.00	0.00	4.18
36	37	3.798380	CGACGAGCATGCCAATGA	58.202	55.556	15.66	0.00	35.67	2.57
37	38	1.349627	CGACGAGCATGCCAATGAC	59.650	57.895	15.66	1.38	35.67	3.06
38	39	1.349627	GACGAGCATGCCAATGACG	59.650	57.895	15.66	12.84	39.36	4.35
39	40	2.023741	CGAGCATGCCAATGACGC	59.976	61.111	15.66	0.00	35.67	5.19
40	41	2.410469	GAGCATGCCAATGACGCC	59.590	61.111	15.66	0.00	35.67	5.68
41	42	3.129913	GAGCATGCCAATGACGCCC	62.130	63.158	15.66	0.00	35.67	6.13
42	43	3.451004	GCATGCCAATGACGCCCA	61.451	61.111	6.36	0.00	35.67	5.36
43	44	2.491152	CATGCCAATGACGCCCAC	59.509	61.111	0.00	0.00	35.67	4.61
44	45	2.048023	CATGCCAATGACGCCCACT	61.048	57.895	0.00	0.00	35.67	4.00
45	46	1.750399	ATGCCAATGACGCCCACTC	60.750	57.895	0.00	0.00	0.00	3.51
46	47	3.134127	GCCAATGACGCCCACTCC	61.134	66.667	0.00	0.00	0.00	3.85
47	48	2.350895	CCAATGACGCCCACTCCA	59.649	61.111	0.00	0.00	0.00	3.86
48	49	1.746615	CCAATGACGCCCACTCCAG	60.747	63.158	0.00	0.00	0.00	3.86
49	50	2.045926	AATGACGCCCACTCCAGC	60.046	61.111	0.00	0.00	0.00	4.85
50	51	2.894257	AATGACGCCCACTCCAGCA	61.894	57.895	0.00	0.00	0.00	4.41
51	52	2.410322	AATGACGCCCACTCCAGCAA	62.410	55.000	0.00	0.00	0.00	3.91
52	53	2.281484	GACGCCCACTCCAGCAAA	60.281	61.111	0.00	0.00	0.00	3.68
53	54	2.281761	ACGCCCACTCCAGCAAAG	60.282	61.111	0.00	0.00	0.00	2.77
54	55	3.741476	CGCCCACTCCAGCAAAGC	61.741	66.667	0.00	0.00	0.00	3.51
55	56	3.376918	GCCCACTCCAGCAAAGCC	61.377	66.667	0.00	0.00	0.00	4.35
56	57	3.058160	CCCACTCCAGCAAAGCCG	61.058	66.667	0.00	0.00	0.00	5.52
57	58	2.032528	CCACTCCAGCAAAGCCGA	59.967	61.111	0.00	0.00	0.00	5.54
58	59	1.600636	CCACTCCAGCAAAGCCGAA	60.601	57.895	0.00	0.00	0.00	4.30
59	60	1.172180	CCACTCCAGCAAAGCCGAAA	61.172	55.000	0.00	0.00	0.00	3.46
60	61	0.883833	CACTCCAGCAAAGCCGAAAT	59.116	50.000	0.00	0.00	0.00	2.17
61	62	1.270550	CACTCCAGCAAAGCCGAAATT	59.729	47.619	0.00	0.00	0.00	1.82
62	63	1.963515	ACTCCAGCAAAGCCGAAATTT	59.036	42.857	0.00	0.00	0.00	1.82
63	64	2.365293	ACTCCAGCAAAGCCGAAATTTT	59.635	40.909	0.00	0.00	0.00	1.82
64	65	2.733026	CTCCAGCAAAGCCGAAATTTTG	59.267	45.455	0.00	0.00	37.35	2.44
65	66	1.799994	CCAGCAAAGCCGAAATTTTGG	59.200	47.619	18.91	18.91	35.40	3.28
66	67	2.482864	CAGCAAAGCCGAAATTTTGGT	58.517	42.857	22.94	9.42	43.46	3.67
67	68	2.871633	CAGCAAAGCCGAAATTTTGGTT	59.128	40.909	22.94	16.07	41.50	3.67
68	69	3.312146	CAGCAAAGCCGAAATTTTGGTTT	59.688	39.130	22.94	20.57	41.50	3.27
69	70	3.944650	AGCAAAGCCGAAATTTTGGTTTT	59.055	34.783	25.67	25.67	43.38	2.43
70	71	4.035091	AGCAAAGCCGAAATTTTGGTTTTC	59.965	37.500	27.52	22.24	41.47	2.29
71	72	4.201861	GCAAAGCCGAAATTTTGGTTTTCA	60.202	37.500	27.52	0.00	41.47	2.69
72	73	5.262422	CAAAGCCGAAATTTTGGTTTTCAC	58.738	37.500	27.52	11.44	41.47	3.18
73	74	3.462982	AGCCGAAATTTTGGTTTTCACC	58.537	40.909	22.94	7.03	44.56	4.02
74	75	3.133901	AGCCGAAATTTTGGTTTTCACCT	59.866	39.130	22.94	9.00	44.61	4.00
75	76	3.247411	GCCGAAATTTTGGTTTTCACCTG	59.753	43.478	22.94	0.00	44.61	4.00
76	77	3.807071	CCGAAATTTTGGTTTTCACCTGG	59.193	43.478	15.51	0.00	44.61	4.45
77	78	4.442192	CCGAAATTTTGGTTTTCACCTGGA	60.442	41.667	15.51	0.00	44.61	3.86
78	79	4.744631	CGAAATTTTGGTTTTCACCTGGAG	59.255	41.667	0.00	0.00	44.61	3.86
79	80	5.451242	CGAAATTTTGGTTTTCACCTGGAGA	60.451	40.000	0.00	0.00	44.61	3.71
80	81	5.535753	AATTTTGGTTTTCACCTGGAGAG	57.464	39.130	0.00	0.00	44.61	3.20
81	82	1.981256	TTGGTTTTCACCTGGAGAGC	58.019	50.000	0.00	0.00	44.61	4.09
82	83	0.110486	TGGTTTTCACCTGGAGAGCC	59.890	55.000	0.00	2.79	44.61	4.70
83	84	0.110486	GGTTTTCACCTGGAGAGCCA	59.890	55.000	0.00	0.00	40.44	4.75
84	85	1.272147	GGTTTTCACCTGGAGAGCCAT	60.272	52.381	0.00	0.00	44.91	4.40
85	86	1.815003	GTTTTCACCTGGAGAGCCATG	59.185	52.381	0.00	0.00	44.91	3.66
86	87	1.361204	TTTCACCTGGAGAGCCATGA	58.639	50.000	0.00	0.00	44.91	3.07
87	88	0.615331	TTCACCTGGAGAGCCATGAC	59.385	55.000	0.00	0.00	44.91	3.06
88	89	0.252421	TCACCTGGAGAGCCATGACT	60.252	55.000	0.00	0.00	44.91	3.41
89	90	0.177604	CACCTGGAGAGCCATGACTC	59.822	60.000	0.00	0.00	44.91	3.36
90	91	0.252421	ACCTGGAGAGCCATGACTCA	60.252	55.000	11.88	0.00	44.91	3.41
91	92	0.907486	CCTGGAGAGCCATGACTCAA	59.093	55.000	11.88	2.21	44.91	3.02
92	93	1.280133	CCTGGAGAGCCATGACTCAAA	59.720	52.381	11.88	0.00	44.91	2.69
93	94	2.092538	CCTGGAGAGCCATGACTCAAAT	60.093	50.000	11.88	0.00	44.91	2.32
94	95	2.943690	CTGGAGAGCCATGACTCAAATG	59.056	50.000	11.88	0.00	44.91	2.32
95	96	2.306805	TGGAGAGCCATGACTCAAATGT	59.693	45.455	11.88	0.00	39.92	2.71
96	97	2.941720	GGAGAGCCATGACTCAAATGTC	59.058	50.000	11.88	0.00	39.26	3.06
97	98	2.606725	GAGAGCCATGACTCAAATGTCG	59.393	50.000	11.88	0.00	39.26	4.35
98	99	2.234661	AGAGCCATGACTCAAATGTCGA	59.765	45.455	11.88	0.00	39.26	4.20
99	100	2.606725	GAGCCATGACTCAAATGTCGAG	59.393	50.000	3.88	0.00	39.64	4.04
100	101	1.063174	GCCATGACTCAAATGTCGAGC	59.937	52.381	0.00	0.00	39.64	5.03
101	102	1.667724	CCATGACTCAAATGTCGAGCC	59.332	52.381	0.00	0.00	39.64	4.70
102	103	1.667724	CATGACTCAAATGTCGAGCCC	59.332	52.381	0.00	0.00	39.64	5.19
103	104	0.976641	TGACTCAAATGTCGAGCCCT	59.023	50.000	0.00	0.00	39.64	5.19
104	105	2.176045	TGACTCAAATGTCGAGCCCTA	58.824	47.619	0.00	0.00	39.64	3.53
105	106	2.766263	TGACTCAAATGTCGAGCCCTAT	59.234	45.455	0.00	0.00	39.64	2.57
106	107	3.181475	TGACTCAAATGTCGAGCCCTATC	60.181	47.826	0.00	0.00	39.64	2.08
107	108	2.766263	ACTCAAATGTCGAGCCCTATCA	59.234	45.455	0.00	0.00	33.58	2.15
108	109	3.126831	CTCAAATGTCGAGCCCTATCAC	58.873	50.000	0.00	0.00	0.00	3.06
109	110	2.499693	TCAAATGTCGAGCCCTATCACA	59.500	45.455	0.00	0.00	0.00	3.58
110	111	2.868583	CAAATGTCGAGCCCTATCACAG	59.131	50.000	0.00	0.00	0.00	3.66
111	112	0.390860	ATGTCGAGCCCTATCACAGC	59.609	55.000	0.00	0.00	0.00	4.40
112	113	0.684479	TGTCGAGCCCTATCACAGCT	60.684	55.000	0.00	0.00	40.24	4.24
115	116	2.521103	GAGCCCTATCACAGCTCCA	58.479	57.895	0.00	0.00	45.83	3.86
116	117	0.392336	GAGCCCTATCACAGCTCCAG	59.608	60.000	0.00	0.00	45.83	3.86
117	118	1.227793	GCCCTATCACAGCTCCAGC	60.228	63.158	0.00	0.00	42.49	4.85
118	119	1.449353	CCCTATCACAGCTCCAGCC	59.551	63.158	0.00	0.00	43.38	4.85
119	120	1.340399	CCCTATCACAGCTCCAGCCA	61.340	60.000	0.00	0.00	43.38	4.75
120	121	0.763652	CCTATCACAGCTCCAGCCAT	59.236	55.000	0.00	0.00	43.38	4.40
121	122	1.542767	CCTATCACAGCTCCAGCCATG	60.543	57.143	0.00	0.00	43.38	3.66
135	136	3.113745	CATGGCGAGGCATGGAAC	58.886	61.111	25.89	0.00	0.00	3.62
147	148	3.834726	TGGAACAGGCAACCAACG	58.165	55.556	0.00	0.00	37.17	4.10
148	149	1.826054	TGGAACAGGCAACCAACGG	60.826	57.895	0.00	0.00	37.17	4.44
149	150	2.335011	GAACAGGCAACCAACGGC	59.665	61.111	0.00	0.00	37.17	5.68
150	151	2.123897	AACAGGCAACCAACGGCT	60.124	55.556	0.00	0.00	40.42	5.52
151	152	0.887387	GAACAGGCAACCAACGGCTA	60.887	55.000	0.00	0.00	37.53	3.93
152	153	0.889186	AACAGGCAACCAACGGCTAG	60.889	55.000	0.00	0.00	37.53	3.42
153	154	2.040544	CAGGCAACCAACGGCTAGG	61.041	63.158	0.00	0.00	37.53	3.02
154	155	2.033602	GGCAACCAACGGCTAGGT	59.966	61.111	0.00	0.00	40.61	3.08
156	157	1.176619	GGCAACCAACGGCTAGGTTT	61.177	55.000	0.00	0.00	45.46	3.27
157	158	0.671796	GCAACCAACGGCTAGGTTTT	59.328	50.000	0.00	0.00	45.46	2.43
158	159	1.335597	GCAACCAACGGCTAGGTTTTC	60.336	52.381	0.00	0.00	45.46	2.29
159	160	1.069500	CAACCAACGGCTAGGTTTTCG	60.069	52.381	0.00	0.00	45.46	3.46
160	161	0.393820	ACCAACGGCTAGGTTTTCGA	59.606	50.000	0.00	0.00	33.39	3.71
161	162	1.076332	CCAACGGCTAGGTTTTCGAG	58.924	55.000	0.00	0.00	0.00	4.04
162	163	1.337447	CCAACGGCTAGGTTTTCGAGA	60.337	52.381	0.00	0.00	0.00	4.04
163	164	2.409975	CAACGGCTAGGTTTTCGAGAA	58.590	47.619	0.00	0.00	0.00	2.87
164	165	2.803956	CAACGGCTAGGTTTTCGAGAAA	59.196	45.455	0.00	0.00	0.00	2.52
165	166	3.116079	ACGGCTAGGTTTTCGAGAAAA	57.884	42.857	6.89	6.89	37.90	2.29
166	167	3.064931	ACGGCTAGGTTTTCGAGAAAAG	58.935	45.455	10.85	1.71	40.53	2.27
167	168	3.243975	ACGGCTAGGTTTTCGAGAAAAGA	60.244	43.478	10.85	0.65	40.53	2.52
168	169	3.933332	CGGCTAGGTTTTCGAGAAAAGAT	59.067	43.478	10.85	6.00	40.53	2.40
169	170	4.392138	CGGCTAGGTTTTCGAGAAAAGATT	59.608	41.667	10.85	3.64	40.53	2.40
170	171	5.579511	CGGCTAGGTTTTCGAGAAAAGATTA	59.420	40.000	10.85	4.45	40.53	1.75
171	172	6.091713	CGGCTAGGTTTTCGAGAAAAGATTAA	59.908	38.462	10.85	0.00	40.53	1.40
172	173	7.201617	CGGCTAGGTTTTCGAGAAAAGATTAAT	60.202	37.037	10.85	0.00	40.53	1.40
173	174	8.459635	GGCTAGGTTTTCGAGAAAAGATTAATT	58.540	33.333	10.85	0.00	40.53	1.40
174	175	9.841880	GCTAGGTTTTCGAGAAAAGATTAATTT	57.158	29.630	10.85	0.00	40.53	1.82
177	178	9.463443	AGGTTTTCGAGAAAAGATTAATTTGTG	57.537	29.630	10.85	0.00	40.53	3.33
178	179	9.458374	GGTTTTCGAGAAAAGATTAATTTGTGA	57.542	29.630	10.85	0.00	40.53	3.58
180	181	9.677567	TTTTCGAGAAAAGATTAATTTGTGAGG	57.322	29.630	6.89	0.00	35.57	3.86
181	182	7.377766	TCGAGAAAAGATTAATTTGTGAGGG	57.622	36.000	0.00	0.00	0.00	4.30
182	183	7.165485	TCGAGAAAAGATTAATTTGTGAGGGA	58.835	34.615	0.00	0.00	0.00	4.20
183	184	7.119262	TCGAGAAAAGATTAATTTGTGAGGGAC	59.881	37.037	0.00	0.00	0.00	4.46
185	186	8.712228	AGAAAAGATTAATTTGTGAGGGACTT	57.288	30.769	0.00	0.00	41.55	3.01
186	187	9.147732	AGAAAAGATTAATTTGTGAGGGACTTT	57.852	29.630	0.00	0.00	41.55	2.66
187	188	9.764363	GAAAAGATTAATTTGTGAGGGACTTTT	57.236	29.630	0.00	0.00	41.55	2.27
188	189	9.764363	AAAAGATTAATTTGTGAGGGACTTTTC	57.236	29.630	0.00	0.00	41.55	2.29
189	190	8.477419	AAGATTAATTTGTGAGGGACTTTTCA	57.523	30.769	0.00	0.00	41.55	2.69
190	191	8.655935	AGATTAATTTGTGAGGGACTTTTCAT	57.344	30.769	0.00	0.00	41.55	2.57
191	192	8.743714	AGATTAATTTGTGAGGGACTTTTCATC	58.256	33.333	0.00	0.00	41.55	2.92
192	193	7.831691	TTAATTTGTGAGGGACTTTTCATCA	57.168	32.000	0.00	0.00	41.55	3.07
193	194	5.972107	ATTTGTGAGGGACTTTTCATCAG	57.028	39.130	0.00	0.00	41.55	2.90
194	195	4.705110	TTGTGAGGGACTTTTCATCAGA	57.295	40.909	0.00	0.00	41.55	3.27
195	196	4.916041	TGTGAGGGACTTTTCATCAGAT	57.084	40.909	0.00	0.00	41.55	2.90
196	197	4.582869	TGTGAGGGACTTTTCATCAGATG	58.417	43.478	3.71	3.71	41.55	2.90
197	198	3.944015	GTGAGGGACTTTTCATCAGATGG	59.056	47.826	10.67	0.00	41.55	3.51
198	199	2.948315	GAGGGACTTTTCATCAGATGGC	59.052	50.000	10.67	0.00	41.55	4.40
199	200	2.027385	GGGACTTTTCATCAGATGGCC	58.973	52.381	10.67	0.00	0.00	5.36
200	201	2.357569	GGGACTTTTCATCAGATGGCCT	60.358	50.000	10.67	0.00	0.00	5.19
201	202	2.948315	GGACTTTTCATCAGATGGCCTC	59.052	50.000	10.67	0.00	0.00	4.70
202	203	3.371380	GGACTTTTCATCAGATGGCCTCT	60.371	47.826	10.67	0.95	33.14	3.69
203	204	4.268359	GACTTTTCATCAGATGGCCTCTT	58.732	43.478	10.67	0.00	29.16	2.85
204	205	4.670765	ACTTTTCATCAGATGGCCTCTTT	58.329	39.130	10.67	0.00	29.16	2.52
205	206	5.082425	ACTTTTCATCAGATGGCCTCTTTT	58.918	37.500	10.67	0.00	29.16	2.27
206	207	5.541484	ACTTTTCATCAGATGGCCTCTTTTT	59.459	36.000	10.67	0.00	29.16	1.94
229	230	8.431910	TTTTAAGAGGCTTTTAGTAGAGAGGA	57.568	34.615	0.00	0.00	0.00	3.71
230	231	8.611051	TTTAAGAGGCTTTTAGTAGAGAGGAT	57.389	34.615	0.00	0.00	0.00	3.24
231	232	8.611051	TTAAGAGGCTTTTAGTAGAGAGGATT	57.389	34.615	0.00	0.00	0.00	3.01
232	233	6.724893	AGAGGCTTTTAGTAGAGAGGATTC	57.275	41.667	0.00	0.00	0.00	2.52
233	234	6.440354	AGAGGCTTTTAGTAGAGAGGATTCT	58.560	40.000	0.00	0.00	36.01	2.40
234	235	7.588169	AGAGGCTTTTAGTAGAGAGGATTCTA	58.412	38.462	0.00	0.00	32.53	2.10
235	236	7.504574	AGAGGCTTTTAGTAGAGAGGATTCTAC	59.495	40.741	5.30	5.30	46.39	2.59
242	243	5.584253	GTAGAGAGGATTCTACAGTGCAA	57.416	43.478	8.00	0.00	45.68	4.08
243	244	4.734398	AGAGAGGATTCTACAGTGCAAG	57.266	45.455	0.00	0.00	32.53	4.01
244	245	4.348486	AGAGAGGATTCTACAGTGCAAGA	58.652	43.478	0.00	0.00	32.53	3.02
245	246	4.961730	AGAGAGGATTCTACAGTGCAAGAT	59.038	41.667	0.00	0.00	32.53	2.40
246	247	5.424895	AGAGAGGATTCTACAGTGCAAGATT	59.575	40.000	0.00	0.00	32.53	2.40
247	248	5.669477	AGAGGATTCTACAGTGCAAGATTC	58.331	41.667	0.00	8.46	0.00	2.52
248	249	5.188555	AGAGGATTCTACAGTGCAAGATTCA	59.811	40.000	14.84	0.00	0.00	2.57
249	250	5.181748	AGGATTCTACAGTGCAAGATTCAC	58.818	41.667	14.84	8.18	34.80	3.18
250	251	5.046014	AGGATTCTACAGTGCAAGATTCACT	60.046	40.000	14.84	9.53	44.87	3.41
251	252	5.293079	GGATTCTACAGTGCAAGATTCACTC	59.707	44.000	14.84	0.00	42.38	3.51
252	253	5.474578	TTCTACAGTGCAAGATTCACTCT	57.525	39.130	0.00	0.00	42.38	3.24
253	254	6.590234	TTCTACAGTGCAAGATTCACTCTA	57.410	37.500	0.00	0.00	42.38	2.43
254	255	5.955488	TCTACAGTGCAAGATTCACTCTAC	58.045	41.667	0.00	0.00	42.38	2.59
255	256	4.881019	ACAGTGCAAGATTCACTCTACT	57.119	40.909	0.00	0.00	42.38	2.57
256	257	5.220710	ACAGTGCAAGATTCACTCTACTT	57.779	39.130	0.00	0.00	42.38	2.24
257	258	5.233988	ACAGTGCAAGATTCACTCTACTTC	58.766	41.667	0.00	0.00	42.38	3.01
258	259	5.011533	ACAGTGCAAGATTCACTCTACTTCT	59.988	40.000	0.00	0.00	42.38	2.85
259	260	5.931146	CAGTGCAAGATTCACTCTACTTCTT	59.069	40.000	0.00	0.00	42.38	2.52
260	261	6.426328	CAGTGCAAGATTCACTCTACTTCTTT	59.574	38.462	0.00	0.00	42.38	2.52
261	262	6.995091	AGTGCAAGATTCACTCTACTTCTTTT	59.005	34.615	0.00	0.00	40.47	2.27
262	263	7.500559	AGTGCAAGATTCACTCTACTTCTTTTT	59.499	33.333	0.00	0.00	40.47	1.94
263	264	7.800847	GTGCAAGATTCACTCTACTTCTTTTTC	59.199	37.037	0.00	0.00	32.41	2.29
264	265	7.716998	TGCAAGATTCACTCTACTTCTTTTTCT	59.283	33.333	0.00	0.00	32.41	2.52
265	266	9.209175	GCAAGATTCACTCTACTTCTTTTTCTA	57.791	33.333	0.00	0.00	32.41	2.10
282	283	9.057089	TCTTTTTCTAAACAAGAAGACTCATCC	57.943	33.333	0.00	0.00	44.95	3.51
283	284	7.745620	TTTTCTAAACAAGAAGACTCATCCC	57.254	36.000	0.00	0.00	44.95	3.85
284	285	5.422214	TCTAAACAAGAAGACTCATCCCC	57.578	43.478	0.00	0.00	0.00	4.81
285	286	4.844085	TCTAAACAAGAAGACTCATCCCCA	59.156	41.667	0.00	0.00	0.00	4.96
286	287	3.710209	AACAAGAAGACTCATCCCCAG	57.290	47.619	0.00	0.00	0.00	4.45
287	288	1.280421	ACAAGAAGACTCATCCCCAGC	59.720	52.381	0.00	0.00	0.00	4.85
288	289	1.280133	CAAGAAGACTCATCCCCAGCA	59.720	52.381	0.00	0.00	0.00	4.41
289	290	0.908198	AGAAGACTCATCCCCAGCAC	59.092	55.000	0.00	0.00	0.00	4.40
290	291	0.615331	GAAGACTCATCCCCAGCACA	59.385	55.000	0.00	0.00	0.00	4.57
291	292	0.326264	AAGACTCATCCCCAGCACAC	59.674	55.000	0.00	0.00	0.00	3.82
292	293	0.546267	AGACTCATCCCCAGCACACT	60.546	55.000	0.00	0.00	0.00	3.55
293	294	0.326264	GACTCATCCCCAGCACACTT	59.674	55.000	0.00	0.00	0.00	3.16
294	295	1.555075	GACTCATCCCCAGCACACTTA	59.445	52.381	0.00	0.00	0.00	2.24
295	296	1.985159	ACTCATCCCCAGCACACTTAA	59.015	47.619	0.00	0.00	0.00	1.85
296	297	2.026822	ACTCATCCCCAGCACACTTAAG	60.027	50.000	0.00	0.00	0.00	1.85
297	298	1.098050	CATCCCCAGCACACTTAAGC	58.902	55.000	1.29	0.00	0.00	3.09
298	299	0.698238	ATCCCCAGCACACTTAAGCA	59.302	50.000	1.29	0.00	0.00	3.91
299	300	0.250727	TCCCCAGCACACTTAAGCAC	60.251	55.000	1.29	0.00	0.00	4.40
300	301	0.537143	CCCCAGCACACTTAAGCACA	60.537	55.000	1.29	0.00	0.00	4.57
301	302	0.877071	CCCAGCACACTTAAGCACAG	59.123	55.000	1.29	0.00	0.00	3.66
302	303	0.877071	CCAGCACACTTAAGCACAGG	59.123	55.000	1.29	0.00	0.00	4.00
303	304	0.877071	CAGCACACTTAAGCACAGGG	59.123	55.000	1.29	0.00	0.00	4.45
304	305	0.250901	AGCACACTTAAGCACAGGGG	60.251	55.000	1.29	0.00	0.00	4.79
305	306	0.537371	GCACACTTAAGCACAGGGGT	60.537	55.000	1.29	0.00	0.00	4.95
306	307	1.271163	GCACACTTAAGCACAGGGGTA	60.271	52.381	1.29	0.00	0.00	3.69
307	308	2.618045	GCACACTTAAGCACAGGGGTAT	60.618	50.000	1.29	0.00	0.00	2.73
308	309	3.370103	GCACACTTAAGCACAGGGGTATA	60.370	47.826	1.29	0.00	0.00	1.47
309	310	4.686122	GCACACTTAAGCACAGGGGTATAT	60.686	45.833	1.29	0.00	0.00	0.86
310	311	5.454187	GCACACTTAAGCACAGGGGTATATA	60.454	44.000	1.29	0.00	0.00	0.86
311	312	6.744339	GCACACTTAAGCACAGGGGTATATAT	60.744	42.308	1.29	0.00	0.00	0.86
312	313	7.526526	GCACACTTAAGCACAGGGGTATATATA	60.527	40.741	1.29	0.00	0.00	0.86
313	314	7.817962	CACACTTAAGCACAGGGGTATATATAC	59.182	40.741	13.60	13.60	0.00	1.47
314	315	7.511371	ACACTTAAGCACAGGGGTATATATACA	59.489	37.037	21.56	0.00	34.98	2.29
315	316	8.540388	CACTTAAGCACAGGGGTATATATACAT	58.460	37.037	21.56	6.88	34.98	2.29
316	317	8.759782	ACTTAAGCACAGGGGTATATATACATC	58.240	37.037	21.56	13.70	34.98	3.06
317	318	8.673456	TTAAGCACAGGGGTATATATACATCA	57.327	34.615	21.56	0.00	34.98	3.07
318	319	7.755666	AAGCACAGGGGTATATATACATCAT	57.244	36.000	21.56	10.05	34.98	2.45
319	320	8.854237	AAGCACAGGGGTATATATACATCATA	57.146	34.615	21.56	0.00	34.98	2.15
320	321	9.452517	AAGCACAGGGGTATATATACATCATAT	57.547	33.333	21.56	1.17	34.98	1.78
321	322	8.874156	AGCACAGGGGTATATATACATCATATG	58.126	37.037	21.56	12.44	34.98	1.78
322	323	8.651389	GCACAGGGGTATATATACATCATATGT	58.349	37.037	21.56	14.08	46.92	2.29
361	362	2.378028	GAGCATCTCCAACAGTCGC	58.622	57.895	0.00	0.00	0.00	5.19
362	363	1.416813	GAGCATCTCCAACAGTCGCG	61.417	60.000	0.00	0.00	0.00	5.87
363	364	3.084579	CATCTCCAACAGTCGCGC	58.915	61.111	0.00	0.00	0.00	6.86
364	365	1.737735	CATCTCCAACAGTCGCGCA	60.738	57.895	8.75	0.00	0.00	6.09
365	366	1.005037	ATCTCCAACAGTCGCGCAA	60.005	52.632	8.75	0.00	0.00	4.85
366	367	1.291877	ATCTCCAACAGTCGCGCAAC	61.292	55.000	8.75	0.00	0.00	4.17
367	368	3.281751	CTCCAACAGTCGCGCAACG	62.282	63.158	8.75	0.00	45.62	4.10
368	369	3.636043	CCAACAGTCGCGCAACGT	61.636	61.111	8.75	0.00	44.19	3.99
369	370	2.128128	CAACAGTCGCGCAACGTC	60.128	61.111	8.75	0.00	44.19	4.34
370	371	3.335534	AACAGTCGCGCAACGTCC	61.336	61.111	8.75	0.00	44.19	4.79
371	372	3.785189	AACAGTCGCGCAACGTCCT	62.785	57.895	8.75	0.00	44.19	3.85
372	373	3.767230	CAGTCGCGCAACGTCCTG	61.767	66.667	8.75	0.00	44.19	3.86
379	380	2.736995	GCAACGTCCTGCGCACTA	60.737	61.111	5.66	0.00	46.11	2.74
380	381	2.314647	GCAACGTCCTGCGCACTAA	61.315	57.895	5.66	0.00	46.11	2.24
381	382	1.837538	GCAACGTCCTGCGCACTAAA	61.838	55.000	5.66	0.00	46.11	1.85
382	383	0.584396	CAACGTCCTGCGCACTAAAA	59.416	50.000	5.66	0.00	46.11	1.52
383	384	0.865769	AACGTCCTGCGCACTAAAAG	59.134	50.000	5.66	0.00	46.11	2.27
384	385	0.249741	ACGTCCTGCGCACTAAAAGT	60.250	50.000	5.66	0.00	46.11	2.66
385	386	0.438830	CGTCCTGCGCACTAAAAGTC	59.561	55.000	5.66	0.00	0.00	3.01
386	387	1.508632	GTCCTGCGCACTAAAAGTCA	58.491	50.000	5.66	0.00	0.00	3.41
387	388	1.461127	GTCCTGCGCACTAAAAGTCAG	59.539	52.381	5.66	0.00	0.00	3.51
388	389	0.798776	CCTGCGCACTAAAAGTCAGG	59.201	55.000	5.66	0.00	35.68	3.86
389	390	1.608025	CCTGCGCACTAAAAGTCAGGA	60.608	52.381	5.66	0.00	42.64	3.86
390	391	2.350522	CTGCGCACTAAAAGTCAGGAT	58.649	47.619	5.66	0.00	0.00	3.24
391	392	3.521560	CTGCGCACTAAAAGTCAGGATA	58.478	45.455	5.66	0.00	0.00	2.59
392	393	3.259064	TGCGCACTAAAAGTCAGGATAC	58.741	45.455	5.66	0.00	0.00	2.24
393	394	3.259064	GCGCACTAAAAGTCAGGATACA	58.741	45.455	0.30	0.00	41.41	2.29
394	395	3.307242	GCGCACTAAAAGTCAGGATACAG	59.693	47.826	0.30	0.00	41.41	2.74
395	396	3.307242	CGCACTAAAAGTCAGGATACAGC	59.693	47.826	0.00	0.00	41.41	4.40
396	397	3.307242	GCACTAAAAGTCAGGATACAGCG	59.693	47.826	0.00	0.00	41.41	5.18
397	398	3.307242	CACTAAAAGTCAGGATACAGCGC	59.693	47.826	0.00	0.00	41.41	5.92
398	399	1.739067	AAAAGTCAGGATACAGCGCC	58.261	50.000	2.29	0.00	41.41	6.53
399	400	0.460284	AAAGTCAGGATACAGCGCCG	60.460	55.000	2.29	0.00	41.41	6.46
400	401	2.279517	GTCAGGATACAGCGCCGG	60.280	66.667	2.29	0.00	41.41	6.13
401	402	3.536917	TCAGGATACAGCGCCGGG	61.537	66.667	2.29	0.00	41.41	5.73
402	403	3.849951	CAGGATACAGCGCCGGGT	61.850	66.667	2.29	2.41	41.41	5.28
403	404	3.849951	AGGATACAGCGCCGGGTG	61.850	66.667	2.29	2.44	46.91	4.61
404	405	3.845259	GGATACAGCGCCGGGTGA	61.845	66.667	12.72	0.00	44.37	4.02
405	406	2.279517	GATACAGCGCCGGGTGAG	60.280	66.667	12.72	5.33	44.37	3.51
406	407	4.530857	ATACAGCGCCGGGTGAGC	62.531	66.667	12.72	7.47	44.37	4.26
414	415	2.115266	CCGGGTGAGCCAGGTTTT	59.885	61.111	0.08	0.00	43.90	2.43
415	416	2.268076	CCGGGTGAGCCAGGTTTTG	61.268	63.158	0.08	0.00	43.90	2.44
416	417	2.919494	CGGGTGAGCCAGGTTTTGC	61.919	63.158	0.08	0.00	36.17	3.68
417	418	2.644992	GGTGAGCCAGGTTTTGCG	59.355	61.111	0.00	0.00	34.09	4.85
418	419	2.050077	GTGAGCCAGGTTTTGCGC	60.050	61.111	0.00	0.00	0.00	6.09
419	420	3.659092	TGAGCCAGGTTTTGCGCG	61.659	61.111	0.00	0.00	0.00	6.86
457	458	2.179517	CGGCCGCCGCAAAATAAA	59.820	55.556	20.79	0.00	41.17	1.40
458	459	1.871789	CGGCCGCCGCAAAATAAAG	60.872	57.895	20.79	0.00	41.17	1.85
459	460	2.164663	GGCCGCCGCAAAATAAAGC	61.165	57.895	0.00	0.00	36.38	3.51
465	466	3.383861	GCAAAATAAAGCGCGCCC	58.616	55.556	30.33	0.16	0.00	6.13
466	467	2.504653	GCAAAATAAAGCGCGCCCG	61.505	57.895	30.33	8.37	37.57	6.13
467	468	1.135731	CAAAATAAAGCGCGCCCGA	59.864	52.632	30.33	13.77	36.29	5.14
468	469	0.861450	CAAAATAAAGCGCGCCCGAG	60.861	55.000	30.33	6.01	36.29	4.63
469	470	2.592623	AAAATAAAGCGCGCCCGAGC	62.593	55.000	30.33	8.33	41.21	5.03
489	490	2.587194	CTCCAGCAAGCGCGCTAT	60.587	61.111	36.73	20.87	45.49	2.97
490	491	1.300156	CTCCAGCAAGCGCGCTATA	60.300	57.895	36.73	14.78	45.49	1.31
491	492	0.668706	CTCCAGCAAGCGCGCTATAT	60.669	55.000	36.73	20.06	45.49	0.86
492	493	0.249868	TCCAGCAAGCGCGCTATATT	60.250	50.000	36.73	16.94	45.49	1.28
493	494	0.588252	CCAGCAAGCGCGCTATATTT	59.412	50.000	36.73	16.48	45.49	1.40
494	495	1.002468	CCAGCAAGCGCGCTATATTTT	60.002	47.619	36.73	15.58	45.49	1.82
495	496	2.039085	CAGCAAGCGCGCTATATTTTG	58.961	47.619	36.73	27.61	45.49	2.44
496	497	1.670811	AGCAAGCGCGCTATATTTTGT	59.329	42.857	36.73	13.79	45.49	2.83
497	498	2.869801	AGCAAGCGCGCTATATTTTGTA	59.130	40.909	36.73	0.00	45.49	2.41
498	499	2.964768	GCAAGCGCGCTATATTTTGTAC	59.035	45.455	36.73	11.81	0.00	2.90
499	500	3.545228	GCAAGCGCGCTATATTTTGTACA	60.545	43.478	36.73	0.00	0.00	2.90
500	501	4.772434	CAAGCGCGCTATATTTTGTACAT	58.228	39.130	36.73	11.15	0.00	2.29
501	502	5.613795	GCAAGCGCGCTATATTTTGTACATA	60.614	40.000	36.73	0.00	0.00	2.29
502	503	5.763444	AGCGCGCTATATTTTGTACATAG	57.237	39.130	35.79	0.00	0.00	2.23
503	504	5.227908	AGCGCGCTATATTTTGTACATAGT	58.772	37.500	35.79	0.18	0.00	2.12
504	505	5.694910	AGCGCGCTATATTTTGTACATAGTT	59.305	36.000	35.79	0.00	0.00	2.24
505	506	6.007677	GCGCGCTATATTTTGTACATAGTTC	58.992	40.000	26.67	0.00	0.00	3.01
506	507	6.128902	GCGCGCTATATTTTGTACATAGTTCT	60.129	38.462	26.67	0.00	0.00	3.01
507	508	7.437912	CGCGCTATATTTTGTACATAGTTCTC	58.562	38.462	5.56	0.00	0.00	2.87
508	509	7.114388	CGCGCTATATTTTGTACATAGTTCTCA	59.886	37.037	5.56	0.00	0.00	3.27
509	510	8.761497	GCGCTATATTTTGTACATAGTTCTCAA	58.239	33.333	0.00	0.00	0.00	3.02
518	519	9.436957	TTTGTACATAGTTCTCAATTCTTCTCC	57.563	33.333	0.00	0.00	0.00	3.71
519	520	8.367660	TGTACATAGTTCTCAATTCTTCTCCT	57.632	34.615	0.00	0.00	0.00	3.69
520	521	9.475620	TGTACATAGTTCTCAATTCTTCTCCTA	57.524	33.333	0.00	0.00	0.00	2.94
521	522	9.738832	GTACATAGTTCTCAATTCTTCTCCTAC	57.261	37.037	0.00	0.00	0.00	3.18
522	523	8.367660	ACATAGTTCTCAATTCTTCTCCTACA	57.632	34.615	0.00	0.00	0.00	2.74
523	524	8.816894	ACATAGTTCTCAATTCTTCTCCTACAA	58.183	33.333	0.00	0.00	0.00	2.41
524	525	9.829507	CATAGTTCTCAATTCTTCTCCTACAAT	57.170	33.333	0.00	0.00	0.00	2.71
527	528	8.816894	AGTTCTCAATTCTTCTCCTACAATACA	58.183	33.333	0.00	0.00	0.00	2.29
528	529	9.606631	GTTCTCAATTCTTCTCCTACAATACAT	57.393	33.333	0.00	0.00	0.00	2.29
551	552	9.993454	ACATAGTCATAGTACATAGTTCTACGA	57.007	33.333	0.00	0.00	0.00	3.43
555	556	9.993454	AGTCATAGTACATAGTTCTACGATACA	57.007	33.333	0.00	0.00	0.00	2.29
562	563	9.379811	GTACATAGTTCTACGATACAACTAAGC	57.620	37.037	0.00	0.00	36.46	3.09
563	564	7.130917	ACATAGTTCTACGATACAACTAAGCG	58.869	38.462	0.00	0.00	36.46	4.68
564	565	5.557891	AGTTCTACGATACAACTAAGCGT	57.442	39.130	0.00	0.00	38.81	5.07
565	566	6.668541	AGTTCTACGATACAACTAAGCGTA	57.331	37.500	0.00	0.00	36.51	4.42
566	567	6.481984	AGTTCTACGATACAACTAAGCGTAC	58.518	40.000	0.00	0.00	36.51	3.67
567	568	6.092670	AGTTCTACGATACAACTAAGCGTACA	59.907	38.462	0.00	0.00	36.51	2.90
568	569	6.609237	TCTACGATACAACTAAGCGTACAT	57.391	37.500	0.00	0.00	36.51	2.29
569	570	7.713764	TCTACGATACAACTAAGCGTACATA	57.286	36.000	0.00	0.00	36.51	2.29
570	571	7.790974	TCTACGATACAACTAAGCGTACATAG	58.209	38.462	0.00	0.00	36.51	2.23
571	572	6.369059	ACGATACAACTAAGCGTACATAGT	57.631	37.500	0.00	0.00	31.79	2.12
572	573	6.789262	ACGATACAACTAAGCGTACATAGTT	58.211	36.000	8.95	8.95	40.09	2.24
573	574	6.909357	ACGATACAACTAAGCGTACATAGTTC	59.091	38.462	10.95	3.00	38.02	3.01
574	575	7.130917	CGATACAACTAAGCGTACATAGTTCT	58.869	38.462	10.95	5.14	38.02	3.01
575	576	8.278408	CGATACAACTAAGCGTACATAGTTCTA	58.722	37.037	10.95	6.67	38.02	2.10
576	577	9.596677	GATACAACTAAGCGTACATAGTTCTAG	57.403	37.037	10.95	5.63	38.02	2.43
577	578	7.388460	ACAACTAAGCGTACATAGTTCTAGT	57.612	36.000	10.95	6.08	38.02	2.57
578	579	7.470900	ACAACTAAGCGTACATAGTTCTAGTC	58.529	38.462	10.95	0.00	38.02	2.59
579	580	7.336427	ACAACTAAGCGTACATAGTTCTAGTCT	59.664	37.037	10.95	0.00	38.02	3.24
580	581	7.862512	ACTAAGCGTACATAGTTCTAGTCTT	57.137	36.000	0.00	0.00	25.68	3.01
581	582	7.918643	ACTAAGCGTACATAGTTCTAGTCTTC	58.081	38.462	0.00	0.00	25.68	2.87
582	583	7.769970	ACTAAGCGTACATAGTTCTAGTCTTCT	59.230	37.037	0.00	0.00	25.68	2.85
583	584	6.607735	AGCGTACATAGTTCTAGTCTTCTC	57.392	41.667	0.00	0.00	0.00	2.87
584	585	5.528320	AGCGTACATAGTTCTAGTCTTCTCC	59.472	44.000	0.00	0.00	0.00	3.71
585	586	5.528320	GCGTACATAGTTCTAGTCTTCTCCT	59.472	44.000	0.00	0.00	0.00	3.69
586	587	6.705381	GCGTACATAGTTCTAGTCTTCTCCTA	59.295	42.308	0.00	0.00	0.00	2.94
587	588	7.307337	GCGTACATAGTTCTAGTCTTCTCCTAC	60.307	44.444	0.00	0.00	0.00	3.18
588	589	7.710044	CGTACATAGTTCTAGTCTTCTCCTACA	59.290	40.741	0.00	0.00	0.00	2.74
589	590	9.393512	GTACATAGTTCTAGTCTTCTCCTACAA	57.606	37.037	0.00	0.00	0.00	2.41
598	599	9.781633	TCTAGTCTTCTCCTACAATACATAGTC	57.218	37.037	0.00	0.00	0.00	2.59
599	600	9.787435	CTAGTCTTCTCCTACAATACATAGTCT	57.213	37.037	0.00	0.00	0.00	3.24
600	601	8.685838	AGTCTTCTCCTACAATACATAGTCTC	57.314	38.462	0.00	0.00	0.00	3.36
601	602	8.275758	AGTCTTCTCCTACAATACATAGTCTCA	58.724	37.037	0.00	0.00	0.00	3.27
602	603	8.347035	GTCTTCTCCTACAATACATAGTCTCAC	58.653	40.741	0.00	0.00	0.00	3.51
603	604	8.053355	TCTTCTCCTACAATACATAGTCTCACA	58.947	37.037	0.00	0.00	0.00	3.58
604	605	8.768501	TTCTCCTACAATACATAGTCTCACAT	57.231	34.615	0.00	0.00	0.00	3.21
605	606	9.862149	TTCTCCTACAATACATAGTCTCACATA	57.138	33.333	0.00	0.00	0.00	2.29
606	607	9.508642	TCTCCTACAATACATAGTCTCACATAG	57.491	37.037	0.00	0.00	0.00	2.23
607	608	9.508642	CTCCTACAATACATAGTCTCACATAGA	57.491	37.037	0.00	0.00	0.00	1.98
608	609	9.862149	TCCTACAATACATAGTCTCACATAGAA	57.138	33.333	0.00	0.00	35.47	2.10
609	610	9.900710	CCTACAATACATAGTCTCACATAGAAC	57.099	37.037	0.00	0.00	35.47	3.01
617	618	9.550406	ACATAGTCTCACATAGAACTACTACTC	57.450	37.037	0.00	0.00	35.47	2.59
618	619	8.705134	CATAGTCTCACATAGAACTACTACTCG	58.295	40.741	0.00	0.00	35.47	4.18
619	620	6.642430	AGTCTCACATAGAACTACTACTCGT	58.358	40.000	0.00	0.00	35.47	4.18
620	621	6.757947	AGTCTCACATAGAACTACTACTCGTC	59.242	42.308	0.00	0.00	35.47	4.20
621	622	6.534436	GTCTCACATAGAACTACTACTCGTCA	59.466	42.308	0.00	0.00	35.47	4.35
622	623	7.225145	GTCTCACATAGAACTACTACTCGTCAT	59.775	40.741	0.00	0.00	35.47	3.06
623	624	7.769507	TCTCACATAGAACTACTACTCGTCATT	59.230	37.037	0.00	0.00	33.62	2.57
624	625	7.917597	TCACATAGAACTACTACTCGTCATTC	58.082	38.462	0.00	0.00	33.62	2.67
625	626	7.769507	TCACATAGAACTACTACTCGTCATTCT	59.230	37.037	0.00	0.00	35.38	2.40
626	627	8.065407	CACATAGAACTACTACTCGTCATTCTC	58.935	40.741	0.00	0.00	33.98	2.87
627	628	7.227116	ACATAGAACTACTACTCGTCATTCTCC	59.773	40.741	0.00	0.00	33.98	3.71
628	629	4.571580	AGAACTACTACTCGTCATTCTCCG	59.428	45.833	0.00	0.00	28.81	4.63
629	630	4.134379	ACTACTACTCGTCATTCTCCGA	57.866	45.455	0.00	0.00	0.00	4.55
630	631	3.870419	ACTACTACTCGTCATTCTCCGAC	59.130	47.826	0.00	0.00	0.00	4.79
631	632	2.988570	ACTACTCGTCATTCTCCGACT	58.011	47.619	0.00	0.00	0.00	4.18
632	633	3.345414	ACTACTCGTCATTCTCCGACTT	58.655	45.455	0.00	0.00	0.00	3.01
633	634	2.638556	ACTCGTCATTCTCCGACTTG	57.361	50.000	0.00	0.00	0.00	3.16
634	635	1.202582	ACTCGTCATTCTCCGACTTGG	59.797	52.381	0.00	0.00	40.09	3.61
636	637	1.201647	TCGTCATTCTCCGACTTGGAC	59.798	52.381	0.00	0.00	43.74	4.02
637	638	1.202582	CGTCATTCTCCGACTTGGACT	59.797	52.381	0.00	0.00	43.74	3.85
638	639	2.732597	CGTCATTCTCCGACTTGGACTC	60.733	54.545	0.00	0.00	43.74	3.36
639	640	2.494073	GTCATTCTCCGACTTGGACTCT	59.506	50.000	0.00	0.00	43.74	3.24
640	641	2.493675	TCATTCTCCGACTTGGACTCTG	59.506	50.000	0.00	0.00	43.74	3.35
641	642	1.996798	TTCTCCGACTTGGACTCTGT	58.003	50.000	0.00	0.00	43.74	3.41
642	643	1.535833	TCTCCGACTTGGACTCTGTC	58.464	55.000	0.00	0.00	43.74	3.51
643	644	1.074084	TCTCCGACTTGGACTCTGTCT	59.926	52.381	0.00	0.00	43.74	3.41
644	645	1.889829	CTCCGACTTGGACTCTGTCTT	59.110	52.381	0.00	0.00	43.74	3.01
645	646	1.613925	TCCGACTTGGACTCTGTCTTG	59.386	52.381	0.00	0.00	43.74	3.02
646	647	1.337260	CCGACTTGGACTCTGTCTTGG	60.337	57.143	0.00	0.00	42.00	3.61
647	648	1.341531	CGACTTGGACTCTGTCTTGGT	59.658	52.381	0.00	0.00	32.47	3.67
648	649	2.760374	GACTTGGACTCTGTCTTGGTG	58.240	52.381	0.00	0.00	32.47	4.17
649	650	2.365617	GACTTGGACTCTGTCTTGGTGA	59.634	50.000	0.00	0.00	32.47	4.02
650	651	2.975489	ACTTGGACTCTGTCTTGGTGAT	59.025	45.455	0.00	0.00	32.47	3.06
651	652	3.244353	ACTTGGACTCTGTCTTGGTGATG	60.244	47.826	0.00	0.00	32.47	3.07
652	653	2.329267	TGGACTCTGTCTTGGTGATGT	58.671	47.619	0.00	0.00	32.47	3.06
653	654	2.300152	TGGACTCTGTCTTGGTGATGTC	59.700	50.000	0.00	0.00	32.47	3.06
654	655	2.354203	GGACTCTGTCTTGGTGATGTCC	60.354	54.545	0.00	0.00	36.42	4.02
655	656	2.564947	GACTCTGTCTTGGTGATGTCCT	59.435	50.000	0.00	0.00	0.00	3.85
656	657	2.564947	ACTCTGTCTTGGTGATGTCCTC	59.435	50.000	0.00	0.00	0.00	3.71
657	658	1.902508	TCTGTCTTGGTGATGTCCTCC	59.097	52.381	0.00	0.00	0.00	4.30
658	659	1.905215	CTGTCTTGGTGATGTCCTCCT	59.095	52.381	0.00	0.00	0.00	3.69
659	660	1.902508	TGTCTTGGTGATGTCCTCCTC	59.097	52.381	0.00	0.00	0.00	3.71
660	661	1.902508	GTCTTGGTGATGTCCTCCTCA	59.097	52.381	0.00	0.00	0.00	3.86
661	662	2.303022	GTCTTGGTGATGTCCTCCTCAA	59.697	50.000	0.00	0.00	0.00	3.02
662	663	2.978978	TCTTGGTGATGTCCTCCTCAAA	59.021	45.455	0.00	0.00	0.00	2.69
663	664	2.859165	TGGTGATGTCCTCCTCAAAC	57.141	50.000	0.00	0.00	0.00	2.93
664	665	1.001974	TGGTGATGTCCTCCTCAAACG	59.998	52.381	0.00	0.00	0.00	3.60
665	666	1.002087	GGTGATGTCCTCCTCAAACGT	59.998	52.381	0.00	0.00	0.00	3.99
666	667	2.550208	GGTGATGTCCTCCTCAAACGTT	60.550	50.000	0.00	0.00	0.00	3.99
667	668	3.139077	GTGATGTCCTCCTCAAACGTTT	58.861	45.455	7.96	7.96	0.00	3.60
668	669	3.058914	GTGATGTCCTCCTCAAACGTTTG	60.059	47.826	30.63	30.63	39.48	2.93
669	670	2.992124	TGTCCTCCTCAAACGTTTGA	57.008	45.000	34.56	34.56	44.31	2.69
678	679	1.463056	TCAAACGTTTGAGCATAGGCG	59.537	47.619	33.86	10.06	41.88	5.52
679	680	3.125956	TCAAACGTTTGAGCATAGGCGT	61.126	45.455	33.86	0.00	41.88	5.68
680	681	4.948724	TCAAACGTTTGAGCATAGGCGTC	61.949	47.826	33.86	0.00	41.88	5.19
689	690	0.373716	GCATAGGCGTCAAAGAACCG	59.626	55.000	0.00	0.00	0.00	4.44
690	691	2.004583	CATAGGCGTCAAAGAACCGA	57.995	50.000	0.00	0.00	0.00	4.69
691	692	2.550978	CATAGGCGTCAAAGAACCGAT	58.449	47.619	0.00	0.00	0.00	4.18
692	693	2.288961	TAGGCGTCAAAGAACCGATC	57.711	50.000	0.00	0.00	0.00	3.69
693	694	0.320374	AGGCGTCAAAGAACCGATCA	59.680	50.000	0.00	0.00	0.00	2.92
694	695	1.066143	AGGCGTCAAAGAACCGATCAT	60.066	47.619	0.00	0.00	0.00	2.45
695	696	1.327764	GGCGTCAAAGAACCGATCATC	59.672	52.381	0.00	0.00	0.00	2.92
696	697	1.999735	GCGTCAAAGAACCGATCATCA	59.000	47.619	0.00	0.00	0.00	3.07
697	698	2.609459	GCGTCAAAGAACCGATCATCAT	59.391	45.455	0.00	0.00	0.00	2.45
698	699	3.302740	GCGTCAAAGAACCGATCATCATC	60.303	47.826	0.00	0.00	0.00	2.92
699	700	3.246226	CGTCAAAGAACCGATCATCATCC	59.754	47.826	0.00	0.00	0.00	3.51
700	701	3.561725	GTCAAAGAACCGATCATCATCCC	59.438	47.826	0.00	0.00	0.00	3.85
701	702	3.199727	TCAAAGAACCGATCATCATCCCA	59.800	43.478	0.00	0.00	0.00	4.37
702	703	3.482156	AAGAACCGATCATCATCCCAG	57.518	47.619	0.00	0.00	0.00	4.45
703	704	1.696336	AGAACCGATCATCATCCCAGG	59.304	52.381	0.00	0.00	0.00	4.45
704	705	1.694150	GAACCGATCATCATCCCAGGA	59.306	52.381	0.00	0.00	0.00	3.86
705	706	1.051812	ACCGATCATCATCCCAGGAC	58.948	55.000	0.00	0.00	0.00	3.85
706	707	0.037882	CCGATCATCATCCCAGGACG	60.038	60.000	0.00	0.00	0.00	4.79
707	708	0.961753	CGATCATCATCCCAGGACGA	59.038	55.000	0.00	0.00	0.00	4.20
708	709	1.336332	CGATCATCATCCCAGGACGAC	60.336	57.143	0.00	0.00	0.00	4.34
709	710	0.676184	ATCATCATCCCAGGACGACG	59.324	55.000	0.00	0.00	0.00	5.12
710	711	1.592669	CATCATCCCAGGACGACGC	60.593	63.158	0.00	0.00	0.00	5.19
711	712	2.058001	ATCATCCCAGGACGACGCA	61.058	57.895	0.00	0.00	0.00	5.24
712	713	1.402896	ATCATCCCAGGACGACGCAT	61.403	55.000	0.00	0.00	0.00	4.73
713	714	1.592669	CATCCCAGGACGACGCATC	60.593	63.158	0.00	0.00	0.00	3.91
714	715	1.758514	ATCCCAGGACGACGCATCT	60.759	57.895	0.00	0.00	0.00	2.90
715	716	1.739338	ATCCCAGGACGACGCATCTC	61.739	60.000	0.00	0.00	0.00	2.75
716	717	2.105128	CCAGGACGACGCATCTCC	59.895	66.667	0.00	0.00	0.00	3.71
717	718	2.418910	CCAGGACGACGCATCTCCT	61.419	63.158	0.00	0.00	34.58	3.69
718	719	1.101635	CCAGGACGACGCATCTCCTA	61.102	60.000	4.58	0.00	33.32	2.94
719	720	0.309302	CAGGACGACGCATCTCCTAG	59.691	60.000	4.58	0.00	33.32	3.02
720	721	1.008309	GGACGACGCATCTCCTAGC	60.008	63.158	0.00	0.00	0.00	3.42
731	732	1.480789	TCTCCTAGCGCCATGTTGTA	58.519	50.000	2.29	0.00	0.00	2.41
753	754	6.957077	TGTATTTGTTAAGAATAAAGCGACGC	59.043	34.615	13.03	13.03	0.00	5.19
778	779	1.126996	GCGCTAAGAGTCGTCACGTC	61.127	60.000	0.00	0.00	0.00	4.34
961	984	0.755327	TATCAGCCACGCTAGCCTCA	60.755	55.000	9.66	0.00	36.40	3.86
989	1012	2.362397	AGAGCACGAACAAGAAGAGACA	59.638	45.455	0.00	0.00	0.00	3.41
1181	1222	4.383861	CACCGCAGAGCAGGCAGA	62.384	66.667	0.00	0.00	0.00	4.26
2131	2173	9.463902	GCTAGGGTTGTAGAGATATTAGTATGA	57.536	37.037	0.00	0.00	0.00	2.15
3024	3130	3.260380	GGCATCATGAGCTAGGTCTATGT	59.740	47.826	21.80	11.39	0.00	2.29
3076	3182	0.168128	GTTGTGGGCGTAGATGTTGC	59.832	55.000	0.00	0.00	0.00	4.17
3438	3547	4.828939	TGATATGGCCAAAAGGATGTGATC	59.171	41.667	10.96	0.96	0.00	2.92
3562	3674	7.517614	TGTCTTTATTTTTGTATGACCTGCA	57.482	32.000	0.00	0.00	0.00	4.41
4127	4240	2.521126	TCACCGATGTTGACTAGTCCA	58.479	47.619	20.11	11.94	0.00	4.02
4188	4301	7.168302	CGGATCATGTTTCACTTAGATGACTAC	59.832	40.741	0.00	0.00	0.00	2.73
5137	5256	5.450412	GGCAACACCAAAGGTATATGTGATG	60.450	44.000	0.00	0.00	38.86	3.07
5141	5260	6.354130	ACACCAAAGGTATATGTGATGTACC	58.646	40.000	0.00	0.00	44.59	3.34
5142	5261	5.763204	CACCAAAGGTATATGTGATGTACCC	59.237	44.000	6.03	0.00	45.15	3.69
5143	5262	5.163131	ACCAAAGGTATATGTGATGTACCCC	60.163	44.000	6.03	0.00	45.15	4.95
5145	5264	5.825593	AAGGTATATGTGATGTACCCCTG	57.174	43.478	6.03	0.00	45.15	4.45
5273	9886	2.166907	TCTCCATCAACCTCTCCCTC	57.833	55.000	0.00	0.00	0.00	4.30
5314	9927	0.178929	AGGAGACGTCTTCCCCAACT	60.179	55.000	21.08	6.84	0.00	3.16
5339	9952	1.885850	GTGTTGAACGCGGAGGTGT	60.886	57.895	12.47	0.00	38.89	4.16
5340	9953	1.593209	TGTTGAACGCGGAGGTGTC	60.593	57.895	12.47	0.00	35.39	3.67
5390	10003	0.723414	GGATCACGACGAGTACGACA	59.277	55.000	0.00	0.00	42.66	4.35
5404	10017	1.186917	ACGACACCATCAACCCCGTA	61.187	55.000	0.00	0.00	0.00	4.02
5414	10027	1.764134	TCAACCCCGTACACTTGAACT	59.236	47.619	0.00	0.00	0.00	3.01
5453	10066	3.134804	ACAAGGGTATGTAGATGCACTCC	59.865	47.826	0.00	0.00	25.83	3.85
5455	10068	4.471078	AGGGTATGTAGATGCACTCCTA	57.529	45.455	0.00	0.00	0.00	2.94
5464	10077	1.543802	GATGCACTCCTATCCCTCTCG	59.456	57.143	0.00	0.00	0.00	4.04
5501	10114	4.260907	CCATAGATTGTTCTTGGTGATGCG	60.261	45.833	0.00	0.00	33.17	4.73
5508	10121	4.130857	TGTTCTTGGTGATGCGTAGAAAA	58.869	39.130	0.00	0.00	0.00	2.29
5529	10143	8.925700	AGAAAATTTTAATTTCTGCAACGATCC	58.074	29.630	2.75	0.00	43.56	3.36
5803	10417	1.227380	GGTCATCGATGAGCCGCTT	60.227	57.895	36.21	0.00	46.54	4.68
5812	10426	4.096003	GAGCCGCTTGCCTACCCA	62.096	66.667	0.00	0.00	42.71	4.51
5968	16051	4.263572	CCGGAGCCAACCACACCA	62.264	66.667	0.00	0.00	0.00	4.17
6310	16629	1.304134	GAATTGACCCCAACCGCCT	60.304	57.895	0.00	0.00	34.72	5.52
6774	17123	8.221801	TGAAAATCATTTGTTAAAATCGACGG	57.778	30.769	0.00	0.00	33.59	4.79
6778	17127	8.980143	AATCATTTGTTAAAATCGACGGAATT	57.020	26.923	0.00	0.00	33.59	2.17
6779	17128	7.789341	TCATTTGTTAAAATCGACGGAATTG	57.211	32.000	0.00	0.00	33.59	2.32
6780	17129	6.306837	TCATTTGTTAAAATCGACGGAATTGC	59.693	34.615	0.00	0.00	33.59	3.56
6894	17596	8.138712	ACAATTAACCGAACAACAACAATATGT	58.861	29.630	0.00	0.00	34.24	2.29
7201	17905	1.833630	CCAGCTGACAGGATCCTACAA	59.166	52.381	15.67	1.36	0.00	2.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
6	7	0.376852	CTCGTCGCTTCCTCTGAGAG	59.623	60.000	6.17	1.57	0.00	3.20
7	8	1.649390	GCTCGTCGCTTCCTCTGAGA	61.649	60.000	6.17	0.00	35.14	3.27
8	9	1.226547	GCTCGTCGCTTCCTCTGAG	60.227	63.158	0.00	0.00	35.14	3.35
9	10	1.315981	ATGCTCGTCGCTTCCTCTGA	61.316	55.000	0.00	0.00	40.11	3.27
10	11	1.140589	ATGCTCGTCGCTTCCTCTG	59.859	57.895	0.00	0.00	40.11	3.35
11	12	1.140589	CATGCTCGTCGCTTCCTCT	59.859	57.895	0.00	0.00	40.11	3.69
12	13	2.520904	GCATGCTCGTCGCTTCCTC	61.521	63.158	11.37	0.00	40.11	3.71
13	14	2.510238	GCATGCTCGTCGCTTCCT	60.510	61.111	11.37	0.00	40.11	3.36
14	15	3.567797	GGCATGCTCGTCGCTTCC	61.568	66.667	18.92	0.00	40.11	3.46
15	16	1.709147	ATTGGCATGCTCGTCGCTTC	61.709	55.000	18.92	0.00	40.11	3.86
16	17	1.746615	ATTGGCATGCTCGTCGCTT	60.747	52.632	18.92	0.00	40.11	4.68
17	18	2.124983	ATTGGCATGCTCGTCGCT	60.125	55.556	18.92	0.00	40.11	4.93
18	19	2.023741	CATTGGCATGCTCGTCGC	59.976	61.111	18.92	0.00	39.77	5.19
19	20	1.349627	GTCATTGGCATGCTCGTCG	59.650	57.895	18.92	3.03	0.00	5.12
20	21	1.349627	CGTCATTGGCATGCTCGTC	59.650	57.895	18.92	0.53	0.00	4.20
21	22	2.753966	GCGTCATTGGCATGCTCGT	61.754	57.895	18.92	0.15	33.25	4.18
22	23	2.023741	GCGTCATTGGCATGCTCG	59.976	61.111	18.92	13.17	33.58	5.03
23	24	2.410469	GGCGTCATTGGCATGCTC	59.590	61.111	18.92	8.46	0.00	4.26
24	25	3.142838	GGGCGTCATTGGCATGCT	61.143	61.111	18.92	0.00	35.84	3.79
25	26	3.451004	TGGGCGTCATTGGCATGC	61.451	61.111	9.90	9.90	35.84	4.06
26	27	1.996786	GAGTGGGCGTCATTGGCATG	61.997	60.000	0.00	0.00	35.84	4.06
27	28	1.750399	GAGTGGGCGTCATTGGCAT	60.750	57.895	0.00	0.00	35.84	4.40
28	29	2.359850	GAGTGGGCGTCATTGGCA	60.360	61.111	0.00	0.00	35.84	4.92
29	30	3.134127	GGAGTGGGCGTCATTGGC	61.134	66.667	0.00	0.00	0.00	4.52
30	31	1.746615	CTGGAGTGGGCGTCATTGG	60.747	63.158	0.00	0.00	0.00	3.16
31	32	2.401766	GCTGGAGTGGGCGTCATTG	61.402	63.158	0.00	0.00	0.00	2.82
32	33	2.045926	GCTGGAGTGGGCGTCATT	60.046	61.111	0.00	0.00	0.00	2.57
33	34	2.410322	TTTGCTGGAGTGGGCGTCAT	62.410	55.000	0.00	0.00	0.00	3.06
34	35	3.113514	TTTGCTGGAGTGGGCGTCA	62.114	57.895	0.00	0.00	0.00	4.35
35	36	2.281484	TTTGCTGGAGTGGGCGTC	60.281	61.111	0.00	0.00	0.00	5.19
36	37	2.281761	CTTTGCTGGAGTGGGCGT	60.282	61.111	0.00	0.00	0.00	5.68
37	38	3.741476	GCTTTGCTGGAGTGGGCG	61.741	66.667	0.00	0.00	0.00	6.13
38	39	3.376918	GGCTTTGCTGGAGTGGGC	61.377	66.667	0.00	0.00	0.00	5.36
39	40	3.058160	CGGCTTTGCTGGAGTGGG	61.058	66.667	0.00	0.00	0.00	4.61
40	41	1.172180	TTTCGGCTTTGCTGGAGTGG	61.172	55.000	0.00	0.00	35.34	4.00
41	42	0.883833	ATTTCGGCTTTGCTGGAGTG	59.116	50.000	0.00	0.00	35.34	3.51
42	43	1.620822	AATTTCGGCTTTGCTGGAGT	58.379	45.000	0.00	0.00	35.34	3.85
43	44	2.730550	AAATTTCGGCTTTGCTGGAG	57.269	45.000	0.00	0.00	35.34	3.86
44	45	2.547642	CCAAAATTTCGGCTTTGCTGGA	60.548	45.455	0.00	0.00	35.34	3.86
45	46	1.799994	CCAAAATTTCGGCTTTGCTGG	59.200	47.619	0.00	0.00	35.34	4.85
46	47	2.482864	ACCAAAATTTCGGCTTTGCTG	58.517	42.857	0.00	0.00	36.06	4.41
47	48	2.908688	ACCAAAATTTCGGCTTTGCT	57.091	40.000	0.00	0.00	32.31	3.91
48	49	3.961477	AAACCAAAATTTCGGCTTTGC	57.039	38.095	0.00	0.00	32.31	3.68
49	50	5.262422	GTGAAAACCAAAATTTCGGCTTTG	58.738	37.500	1.29	0.00	39.17	2.77
50	51	4.334203	GGTGAAAACCAAAATTTCGGCTTT	59.666	37.500	0.00	0.00	39.17	3.51
51	52	3.874543	GGTGAAAACCAAAATTTCGGCTT	59.125	39.130	0.00	0.00	39.17	4.35
52	53	3.133901	AGGTGAAAACCAAAATTTCGGCT	59.866	39.130	0.00	0.00	39.17	5.52
53	54	3.247411	CAGGTGAAAACCAAAATTTCGGC	59.753	43.478	0.00	0.00	39.17	5.54
54	55	3.807071	CCAGGTGAAAACCAAAATTTCGG	59.193	43.478	0.00	0.00	39.17	4.30
55	56	4.688021	TCCAGGTGAAAACCAAAATTTCG	58.312	39.130	0.00	0.00	39.17	3.46
56	57	5.912892	TCTCCAGGTGAAAACCAAAATTTC	58.087	37.500	0.00	0.00	37.31	2.17
57	58	5.684813	GCTCTCCAGGTGAAAACCAAAATTT	60.685	40.000	0.00	0.00	0.00	1.82
58	59	4.202253	GCTCTCCAGGTGAAAACCAAAATT	60.202	41.667	0.00	0.00	0.00	1.82
59	60	3.321968	GCTCTCCAGGTGAAAACCAAAAT	59.678	43.478	0.00	0.00	0.00	1.82
60	61	2.693074	GCTCTCCAGGTGAAAACCAAAA	59.307	45.455	0.00	0.00	0.00	2.44
61	62	2.306847	GCTCTCCAGGTGAAAACCAAA	58.693	47.619	0.00	0.00	0.00	3.28
62	63	1.478654	GGCTCTCCAGGTGAAAACCAA	60.479	52.381	0.00	0.00	0.00	3.67
63	64	0.110486	GGCTCTCCAGGTGAAAACCA	59.890	55.000	0.00	0.00	0.00	3.67
64	65	0.110486	TGGCTCTCCAGGTGAAAACC	59.890	55.000	0.00	0.00	37.47	3.27
65	66	3.725754	TGGCTCTCCAGGTGAAAAC	57.274	52.632	0.00	0.00	37.47	2.43
74	75	6.944690	CGACATTTGAGTCATGGCTCTCCA	62.945	50.000	26.71	11.84	38.00	3.86
75	76	2.941720	GACATTTGAGTCATGGCTCTCC	59.058	50.000	26.71	3.08	38.40	3.71
76	77	2.606725	CGACATTTGAGTCATGGCTCTC	59.393	50.000	26.71	14.90	38.43	3.20
77	78	2.234661	TCGACATTTGAGTCATGGCTCT	59.765	45.455	26.71	7.31	38.43	4.09
78	79	2.606725	CTCGACATTTGAGTCATGGCTC	59.393	50.000	20.65	20.65	38.43	4.70
79	80	2.625737	CTCGACATTTGAGTCATGGCT	58.374	47.619	0.00	0.00	38.43	4.75
80	81	1.063174	GCTCGACATTTGAGTCATGGC	59.937	52.381	0.00	0.00	38.43	4.40
81	82	1.667724	GGCTCGACATTTGAGTCATGG	59.332	52.381	0.00	0.00	37.98	3.66
82	83	1.667724	GGGCTCGACATTTGAGTCATG	59.332	52.381	0.00	0.00	39.84	3.07
83	84	1.556911	AGGGCTCGACATTTGAGTCAT	59.443	47.619	0.00	0.00	39.84	3.06
84	85	0.976641	AGGGCTCGACATTTGAGTCA	59.023	50.000	0.00	0.00	39.84	3.41
85	86	2.961526	TAGGGCTCGACATTTGAGTC	57.038	50.000	0.00	0.00	37.35	3.36
86	87	2.766263	TGATAGGGCTCGACATTTGAGT	59.234	45.455	0.00	0.00	35.85	3.41
87	88	3.126831	GTGATAGGGCTCGACATTTGAG	58.873	50.000	0.00	0.00	36.53	3.02
88	89	2.499693	TGTGATAGGGCTCGACATTTGA	59.500	45.455	0.00	0.00	0.00	2.69
89	90	2.868583	CTGTGATAGGGCTCGACATTTG	59.131	50.000	0.00	0.00	0.00	2.32
90	91	2.743183	GCTGTGATAGGGCTCGACATTT	60.743	50.000	0.00	0.00	0.00	2.32
91	92	1.202580	GCTGTGATAGGGCTCGACATT	60.203	52.381	0.00	0.00	0.00	2.71
92	93	0.390860	GCTGTGATAGGGCTCGACAT	59.609	55.000	0.00	0.00	0.00	3.06
93	94	0.684479	AGCTGTGATAGGGCTCGACA	60.684	55.000	0.00	0.00	0.00	4.35
94	95	0.031449	GAGCTGTGATAGGGCTCGAC	59.969	60.000	0.00	0.00	42.03	4.20
95	96	2.420138	GAGCTGTGATAGGGCTCGA	58.580	57.895	0.00	0.00	42.03	4.04
98	99	1.694133	GCTGGAGCTGTGATAGGGCT	61.694	60.000	0.00	0.00	39.16	5.19
99	100	1.227793	GCTGGAGCTGTGATAGGGC	60.228	63.158	0.00	0.00	38.21	5.19
100	101	1.340399	TGGCTGGAGCTGTGATAGGG	61.340	60.000	0.00	0.00	41.70	3.53
101	102	0.763652	ATGGCTGGAGCTGTGATAGG	59.236	55.000	0.00	0.00	41.70	2.57
102	103	1.542767	CCATGGCTGGAGCTGTGATAG	60.543	57.143	0.00	0.00	46.37	2.08
103	104	0.471191	CCATGGCTGGAGCTGTGATA	59.529	55.000	0.00	0.00	46.37	2.15
104	105	1.226542	CCATGGCTGGAGCTGTGAT	59.773	57.895	0.00	0.00	46.37	3.06
105	106	2.672908	CCATGGCTGGAGCTGTGA	59.327	61.111	0.00	0.00	46.37	3.58
106	107	3.138798	GCCATGGCTGGAGCTGTG	61.139	66.667	29.98	0.00	46.37	3.66
107	108	4.790962	CGCCATGGCTGGAGCTGT	62.791	66.667	33.07	0.00	46.37	4.40
108	109	4.478371	TCGCCATGGCTGGAGCTG	62.478	66.667	33.07	16.54	46.37	4.24
109	110	4.172512	CTCGCCATGGCTGGAGCT	62.173	66.667	33.07	0.00	46.37	4.09
118	119	1.721664	CTGTTCCATGCCTCGCCATG	61.722	60.000	0.00	4.26	41.71	3.66
119	120	1.452651	CTGTTCCATGCCTCGCCAT	60.453	57.895	0.00	0.00	0.00	4.40
120	121	2.046023	CTGTTCCATGCCTCGCCA	60.046	61.111	0.00	0.00	0.00	5.69
121	122	2.825836	CCTGTTCCATGCCTCGCC	60.826	66.667	0.00	0.00	0.00	5.54
122	123	3.512516	GCCTGTTCCATGCCTCGC	61.513	66.667	0.00	0.00	0.00	5.03
123	124	1.675310	TTGCCTGTTCCATGCCTCG	60.675	57.895	0.00	0.00	0.00	4.63
124	125	1.598701	GGTTGCCTGTTCCATGCCTC	61.599	60.000	0.00	0.00	0.00	4.70
125	126	1.607467	GGTTGCCTGTTCCATGCCT	60.607	57.895	0.00	0.00	0.00	4.75
126	127	1.470996	TTGGTTGCCTGTTCCATGCC	61.471	55.000	0.00	0.00	0.00	4.40
127	128	0.319813	GTTGGTTGCCTGTTCCATGC	60.320	55.000	0.00	0.00	0.00	4.06
128	129	0.039256	CGTTGGTTGCCTGTTCCATG	60.039	55.000	0.00	0.00	0.00	3.66
129	130	1.178534	CCGTTGGTTGCCTGTTCCAT	61.179	55.000	0.00	0.00	0.00	3.41
130	131	1.826054	CCGTTGGTTGCCTGTTCCA	60.826	57.895	0.00	0.00	0.00	3.53
131	132	3.039134	CCGTTGGTTGCCTGTTCC	58.961	61.111	0.00	0.00	0.00	3.62
132	133	0.887387	TAGCCGTTGGTTGCCTGTTC	60.887	55.000	0.00	0.00	0.00	3.18
133	134	0.889186	CTAGCCGTTGGTTGCCTGTT	60.889	55.000	0.00	0.00	0.00	3.16
134	135	1.302511	CTAGCCGTTGGTTGCCTGT	60.303	57.895	0.00	0.00	0.00	4.00
135	136	2.040544	CCTAGCCGTTGGTTGCCTG	61.041	63.158	0.00	0.00	0.00	4.85
136	137	2.064242	AACCTAGCCGTTGGTTGCCT	62.064	55.000	0.00	0.00	44.02	4.75
137	138	1.176619	AAACCTAGCCGTTGGTTGCC	61.177	55.000	0.00	0.00	44.83	4.52
138	139	0.671796	AAAACCTAGCCGTTGGTTGC	59.328	50.000	0.00	0.00	44.83	4.17
139	140	1.069500	CGAAAACCTAGCCGTTGGTTG	60.069	52.381	0.00	0.00	44.83	3.77
141	142	0.393820	TCGAAAACCTAGCCGTTGGT	59.606	50.000	0.00	0.00	38.35	3.67
142	143	1.076332	CTCGAAAACCTAGCCGTTGG	58.924	55.000	0.00	0.00	0.00	3.77
143	144	2.074547	TCTCGAAAACCTAGCCGTTG	57.925	50.000	0.00	0.00	0.00	4.10
144	145	2.825861	TTCTCGAAAACCTAGCCGTT	57.174	45.000	0.00	0.00	0.00	4.44
145	146	2.825861	TTTCTCGAAAACCTAGCCGT	57.174	45.000	0.00	0.00	0.00	5.68
146	147	3.323243	TCTTTTCTCGAAAACCTAGCCG	58.677	45.455	0.93	0.00	35.57	5.52
147	148	5.881777	AATCTTTTCTCGAAAACCTAGCC	57.118	39.130	0.93	0.00	35.57	3.93
148	149	9.841880	AAATTAATCTTTTCTCGAAAACCTAGC	57.158	29.630	0.93	0.00	35.57	3.42
151	152	9.463443	CACAAATTAATCTTTTCTCGAAAACCT	57.537	29.630	0.93	0.00	35.57	3.50
152	153	9.458374	TCACAAATTAATCTTTTCTCGAAAACC	57.542	29.630	0.93	0.00	35.57	3.27
154	155	9.677567	CCTCACAAATTAATCTTTTCTCGAAAA	57.322	29.630	4.90	4.90	37.90	2.29
155	156	8.296713	CCCTCACAAATTAATCTTTTCTCGAAA	58.703	33.333	0.00	0.00	0.00	3.46
156	157	7.663905	TCCCTCACAAATTAATCTTTTCTCGAA	59.336	33.333	0.00	0.00	0.00	3.71
157	158	7.119262	GTCCCTCACAAATTAATCTTTTCTCGA	59.881	37.037	0.00	0.00	0.00	4.04
158	159	7.119846	AGTCCCTCACAAATTAATCTTTTCTCG	59.880	37.037	0.00	0.00	0.00	4.04
159	160	8.341892	AGTCCCTCACAAATTAATCTTTTCTC	57.658	34.615	0.00	0.00	0.00	2.87
160	161	8.712228	AAGTCCCTCACAAATTAATCTTTTCT	57.288	30.769	0.00	0.00	0.00	2.52
161	162	9.764363	AAAAGTCCCTCACAAATTAATCTTTTC	57.236	29.630	0.00	0.00	29.45	2.29
162	163	9.764363	GAAAAGTCCCTCACAAATTAATCTTTT	57.236	29.630	0.00	0.00	35.23	2.27
163	164	8.923270	TGAAAAGTCCCTCACAAATTAATCTTT	58.077	29.630	0.00	0.00	0.00	2.52
164	165	8.477419	TGAAAAGTCCCTCACAAATTAATCTT	57.523	30.769	0.00	0.00	0.00	2.40
165	166	8.655935	ATGAAAAGTCCCTCACAAATTAATCT	57.344	30.769	0.00	0.00	0.00	2.40
166	167	8.522830	TGATGAAAAGTCCCTCACAAATTAATC	58.477	33.333	0.00	0.00	0.00	1.75
167	168	8.421249	TGATGAAAAGTCCCTCACAAATTAAT	57.579	30.769	0.00	0.00	0.00	1.40
168	169	7.723616	TCTGATGAAAAGTCCCTCACAAATTAA	59.276	33.333	0.00	0.00	0.00	1.40
169	170	7.230747	TCTGATGAAAAGTCCCTCACAAATTA	58.769	34.615	0.00	0.00	0.00	1.40
170	171	6.070656	TCTGATGAAAAGTCCCTCACAAATT	58.929	36.000	0.00	0.00	0.00	1.82
171	172	5.634118	TCTGATGAAAAGTCCCTCACAAAT	58.366	37.500	0.00	0.00	0.00	2.32
172	173	5.047566	TCTGATGAAAAGTCCCTCACAAA	57.952	39.130	0.00	0.00	0.00	2.83
173	174	4.705110	TCTGATGAAAAGTCCCTCACAA	57.295	40.909	0.00	0.00	0.00	3.33
174	175	4.566278	CCATCTGATGAAAAGTCCCTCACA	60.566	45.833	18.92	0.00	0.00	3.58
175	176	3.944015	CCATCTGATGAAAAGTCCCTCAC	59.056	47.826	18.92	0.00	0.00	3.51
176	177	3.623203	GCCATCTGATGAAAAGTCCCTCA	60.623	47.826	18.92	0.00	0.00	3.86
177	178	2.948315	GCCATCTGATGAAAAGTCCCTC	59.052	50.000	18.92	0.00	0.00	4.30
178	179	2.357569	GGCCATCTGATGAAAAGTCCCT	60.358	50.000	18.92	0.00	0.00	4.20
179	180	2.027385	GGCCATCTGATGAAAAGTCCC	58.973	52.381	18.92	4.13	0.00	4.46
180	181	2.948315	GAGGCCATCTGATGAAAAGTCC	59.052	50.000	18.92	9.30	0.00	3.85
181	182	3.883669	AGAGGCCATCTGATGAAAAGTC	58.116	45.455	18.92	3.82	36.69	3.01
182	183	4.313020	AAGAGGCCATCTGATGAAAAGT	57.687	40.909	18.92	0.00	38.67	2.66
183	184	5.656213	AAAAGAGGCCATCTGATGAAAAG	57.344	39.130	18.92	3.43	38.67	2.27
203	204	8.877195	TCCTCTCTACTAAAAGCCTCTTAAAAA	58.123	33.333	0.00	0.00	0.00	1.94
204	205	8.431910	TCCTCTCTACTAAAAGCCTCTTAAAA	57.568	34.615	0.00	0.00	0.00	1.52
205	206	8.611051	ATCCTCTCTACTAAAAGCCTCTTAAA	57.389	34.615	0.00	0.00	0.00	1.52
206	207	8.611051	AATCCTCTCTACTAAAAGCCTCTTAA	57.389	34.615	0.00	0.00	0.00	1.85
207	208	8.062536	AGAATCCTCTCTACTAAAAGCCTCTTA	58.937	37.037	0.00	0.00	0.00	2.10
208	209	6.900743	AGAATCCTCTCTACTAAAAGCCTCTT	59.099	38.462	0.00	0.00	0.00	2.85
209	210	6.440354	AGAATCCTCTCTACTAAAAGCCTCT	58.560	40.000	0.00	0.00	0.00	3.69
210	211	6.724893	AGAATCCTCTCTACTAAAAGCCTC	57.275	41.667	0.00	0.00	0.00	4.70
211	212	7.126733	TGTAGAATCCTCTCTACTAAAAGCCT	58.873	38.462	11.05	0.00	45.45	4.58
212	213	7.068962	ACTGTAGAATCCTCTCTACTAAAAGCC	59.931	40.741	11.05	0.00	45.45	4.35
213	214	7.918562	CACTGTAGAATCCTCTCTACTAAAAGC	59.081	40.741	11.05	0.00	45.45	3.51
214	215	7.918562	GCACTGTAGAATCCTCTCTACTAAAAG	59.081	40.741	11.05	4.16	45.45	2.27
215	216	7.396339	TGCACTGTAGAATCCTCTCTACTAAAA	59.604	37.037	11.05	0.00	45.45	1.52
216	217	6.890268	TGCACTGTAGAATCCTCTCTACTAAA	59.110	38.462	11.05	0.00	45.45	1.85
217	218	6.424032	TGCACTGTAGAATCCTCTCTACTAA	58.576	40.000	11.05	0.00	45.45	2.24
218	219	6.002653	TGCACTGTAGAATCCTCTCTACTA	57.997	41.667	11.05	0.00	45.45	1.82
219	220	4.861196	TGCACTGTAGAATCCTCTCTACT	58.139	43.478	11.05	0.00	45.45	2.57
220	221	5.358442	TCTTGCACTGTAGAATCCTCTCTAC	59.642	44.000	4.21	4.21	45.45	2.59
221	222	5.510430	TCTTGCACTGTAGAATCCTCTCTA	58.490	41.667	0.00	0.00	32.70	2.43
222	223	4.348486	TCTTGCACTGTAGAATCCTCTCT	58.652	43.478	0.00	0.00	32.70	3.10
223	224	4.727507	TCTTGCACTGTAGAATCCTCTC	57.272	45.455	0.00	0.00	32.70	3.20
224	225	5.188555	TGAATCTTGCACTGTAGAATCCTCT	59.811	40.000	0.00	0.00	35.52	3.69
225	226	5.293079	GTGAATCTTGCACTGTAGAATCCTC	59.707	44.000	0.00	0.00	33.57	3.71
226	227	5.046014	AGTGAATCTTGCACTGTAGAATCCT	60.046	40.000	0.00	0.00	44.39	3.24
227	228	5.181748	AGTGAATCTTGCACTGTAGAATCC	58.818	41.667	0.00	0.00	44.39	3.01
228	229	6.105333	AGAGTGAATCTTGCACTGTAGAATC	58.895	40.000	0.00	0.00	45.94	2.52
229	230	6.047511	AGAGTGAATCTTGCACTGTAGAAT	57.952	37.500	0.00	0.00	45.94	2.40
230	231	5.474578	AGAGTGAATCTTGCACTGTAGAA	57.525	39.130	0.00	0.00	45.94	2.10
231	232	5.712446	AGTAGAGTGAATCTTGCACTGTAGA	59.288	40.000	0.00	0.00	45.94	2.59
232	233	5.960113	AGTAGAGTGAATCTTGCACTGTAG	58.040	41.667	0.00	0.00	45.94	2.74
233	234	5.984695	AGTAGAGTGAATCTTGCACTGTA	57.015	39.130	0.00	0.00	45.94	2.74
234	235	4.881019	AGTAGAGTGAATCTTGCACTGT	57.119	40.909	0.00	0.00	45.94	3.55
235	236	5.477510	AGAAGTAGAGTGAATCTTGCACTG	58.522	41.667	0.00	0.00	45.94	3.66
237	238	6.793492	AAAGAAGTAGAGTGAATCTTGCAC	57.207	37.500	0.00	0.00	39.64	4.57
238	239	7.716998	AGAAAAAGAAGTAGAGTGAATCTTGCA	59.283	33.333	0.00	0.00	39.64	4.08
239	240	8.093659	AGAAAAAGAAGTAGAGTGAATCTTGC	57.906	34.615	0.00	0.00	39.64	4.01
256	257	9.057089	GGATGAGTCTTCTTGTTTAGAAAAAGA	57.943	33.333	6.04	0.00	42.19	2.52
257	258	8.293157	GGGATGAGTCTTCTTGTTTAGAAAAAG	58.707	37.037	6.04	0.00	42.19	2.27
258	259	7.230712	GGGGATGAGTCTTCTTGTTTAGAAAAA	59.769	37.037	6.04	0.00	42.19	1.94
259	260	6.715264	GGGGATGAGTCTTCTTGTTTAGAAAA	59.285	38.462	6.04	0.00	42.19	2.29
260	261	6.183361	TGGGGATGAGTCTTCTTGTTTAGAAA	60.183	38.462	6.04	0.00	42.19	2.52
261	262	5.309543	TGGGGATGAGTCTTCTTGTTTAGAA	59.690	40.000	6.04	0.00	40.57	2.10
262	263	4.844085	TGGGGATGAGTCTTCTTGTTTAGA	59.156	41.667	6.04	0.00	0.00	2.10
263	264	5.165961	TGGGGATGAGTCTTCTTGTTTAG	57.834	43.478	6.04	0.00	0.00	1.85
264	265	4.565652	GCTGGGGATGAGTCTTCTTGTTTA	60.566	45.833	6.04	0.00	0.00	2.01
265	266	3.812167	GCTGGGGATGAGTCTTCTTGTTT	60.812	47.826	6.04	0.00	0.00	2.83
266	267	2.290577	GCTGGGGATGAGTCTTCTTGTT	60.291	50.000	6.04	0.00	0.00	2.83
267	268	1.280421	GCTGGGGATGAGTCTTCTTGT	59.720	52.381	6.04	0.00	0.00	3.16
268	269	1.280133	TGCTGGGGATGAGTCTTCTTG	59.720	52.381	6.04	0.00	0.00	3.02
269	270	1.280421	GTGCTGGGGATGAGTCTTCTT	59.720	52.381	6.04	0.00	0.00	2.52
270	271	0.908198	GTGCTGGGGATGAGTCTTCT	59.092	55.000	6.04	0.00	0.00	2.85
271	272	0.615331	TGTGCTGGGGATGAGTCTTC	59.385	55.000	0.00	0.00	0.00	2.87
272	273	0.326264	GTGTGCTGGGGATGAGTCTT	59.674	55.000	0.00	0.00	0.00	3.01
273	274	0.546267	AGTGTGCTGGGGATGAGTCT	60.546	55.000	0.00	0.00	0.00	3.24
274	275	0.326264	AAGTGTGCTGGGGATGAGTC	59.674	55.000	0.00	0.00	0.00	3.36
275	276	1.656587	TAAGTGTGCTGGGGATGAGT	58.343	50.000	0.00	0.00	0.00	3.41
276	277	2.636830	CTTAAGTGTGCTGGGGATGAG	58.363	52.381	0.00	0.00	0.00	2.90
277	278	1.340017	GCTTAAGTGTGCTGGGGATGA	60.340	52.381	4.02	0.00	0.00	2.92
278	279	1.098050	GCTTAAGTGTGCTGGGGATG	58.902	55.000	4.02	0.00	0.00	3.51
279	280	0.698238	TGCTTAAGTGTGCTGGGGAT	59.302	50.000	4.02	0.00	0.00	3.85
280	281	0.250727	GTGCTTAAGTGTGCTGGGGA	60.251	55.000	4.02	0.00	0.00	4.81
281	282	0.537143	TGTGCTTAAGTGTGCTGGGG	60.537	55.000	4.02	0.00	0.00	4.96
282	283	0.877071	CTGTGCTTAAGTGTGCTGGG	59.123	55.000	4.02	0.00	0.00	4.45
283	284	0.877071	CCTGTGCTTAAGTGTGCTGG	59.123	55.000	4.02	2.58	0.00	4.85
284	285	0.877071	CCCTGTGCTTAAGTGTGCTG	59.123	55.000	4.02	0.00	0.00	4.41
285	286	0.250901	CCCCTGTGCTTAAGTGTGCT	60.251	55.000	4.02	0.00	0.00	4.40
286	287	0.537371	ACCCCTGTGCTTAAGTGTGC	60.537	55.000	4.02	0.00	0.00	4.57
287	288	2.851263	TACCCCTGTGCTTAAGTGTG	57.149	50.000	4.02	0.00	0.00	3.82
288	289	7.511371	TGTATATATACCCCTGTGCTTAAGTGT	59.489	37.037	18.20	0.00	32.33	3.55
289	290	7.903145	TGTATATATACCCCTGTGCTTAAGTG	58.097	38.462	18.20	0.00	32.33	3.16
290	291	8.680820	ATGTATATATACCCCTGTGCTTAAGT	57.319	34.615	18.20	0.00	32.33	2.24
291	292	8.758829	TGATGTATATATACCCCTGTGCTTAAG	58.241	37.037	18.20	0.00	32.33	1.85
292	293	8.673456	TGATGTATATATACCCCTGTGCTTAA	57.327	34.615	18.20	0.00	32.33	1.85
293	294	8.854237	ATGATGTATATATACCCCTGTGCTTA	57.146	34.615	18.20	0.00	32.33	3.09
294	295	7.755666	ATGATGTATATATACCCCTGTGCTT	57.244	36.000	18.20	0.00	32.33	3.91
295	296	8.874156	CATATGATGTATATATACCCCTGTGCT	58.126	37.037	18.20	1.01	30.75	4.40
296	297	8.651389	ACATATGATGTATATATACCCCTGTGC	58.349	37.037	18.20	3.21	42.78	4.57
324	325	9.453572	AGATGCTCTAAGAAATGAAACATACAA	57.546	29.630	0.00	0.00	0.00	2.41
325	326	9.102757	GAGATGCTCTAAGAAATGAAACATACA	57.897	33.333	0.00	0.00	0.00	2.29
326	327	8.555361	GGAGATGCTCTAAGAAATGAAACATAC	58.445	37.037	0.00	0.00	0.00	2.39
327	328	8.267183	TGGAGATGCTCTAAGAAATGAAACATA	58.733	33.333	0.00	0.00	0.00	2.29
328	329	7.114754	TGGAGATGCTCTAAGAAATGAAACAT	58.885	34.615	0.00	0.00	0.00	2.71
329	330	6.475504	TGGAGATGCTCTAAGAAATGAAACA	58.524	36.000	0.00	0.00	0.00	2.83
330	331	6.992063	TGGAGATGCTCTAAGAAATGAAAC	57.008	37.500	0.00	0.00	0.00	2.78
331	332	6.942005	TGTTGGAGATGCTCTAAGAAATGAAA	59.058	34.615	0.00	0.00	31.92	2.69
332	333	6.475504	TGTTGGAGATGCTCTAAGAAATGAA	58.524	36.000	0.00	0.00	31.92	2.57
333	334	6.053632	TGTTGGAGATGCTCTAAGAAATGA	57.946	37.500	0.00	0.00	31.92	2.57
334	335	5.879223	ACTGTTGGAGATGCTCTAAGAAATG	59.121	40.000	0.00	0.00	31.92	2.32
335	336	6.059787	ACTGTTGGAGATGCTCTAAGAAAT	57.940	37.500	0.00	0.00	31.92	2.17
336	337	5.482908	GACTGTTGGAGATGCTCTAAGAAA	58.517	41.667	0.00	0.00	31.92	2.52
337	338	4.380973	CGACTGTTGGAGATGCTCTAAGAA	60.381	45.833	0.00	0.00	31.92	2.52
338	339	3.129462	CGACTGTTGGAGATGCTCTAAGA	59.871	47.826	0.00	0.00	31.92	2.10
339	340	3.443037	CGACTGTTGGAGATGCTCTAAG	58.557	50.000	0.00	0.00	31.92	2.18
340	341	2.417379	GCGACTGTTGGAGATGCTCTAA	60.417	50.000	0.00	0.00	0.00	2.10
341	342	1.135139	GCGACTGTTGGAGATGCTCTA	59.865	52.381	0.00	0.00	0.00	2.43
342	343	0.108424	GCGACTGTTGGAGATGCTCT	60.108	55.000	0.00	0.00	0.00	4.09
343	344	1.416813	CGCGACTGTTGGAGATGCTC	61.417	60.000	0.00	0.00	0.00	4.26
344	345	1.446792	CGCGACTGTTGGAGATGCT	60.447	57.895	0.00	0.00	0.00	3.79
345	346	3.084579	CGCGACTGTTGGAGATGC	58.915	61.111	0.00	0.00	0.00	3.91
346	347	1.291184	TTGCGCGACTGTTGGAGATG	61.291	55.000	12.10	0.00	0.00	2.90
347	348	1.005037	TTGCGCGACTGTTGGAGAT	60.005	52.632	12.10	0.00	0.00	2.75
348	349	1.954146	GTTGCGCGACTGTTGGAGA	60.954	57.895	20.81	0.00	0.00	3.71
349	350	2.551270	GTTGCGCGACTGTTGGAG	59.449	61.111	20.81	0.00	0.00	3.86
350	351	3.334751	CGTTGCGCGACTGTTGGA	61.335	61.111	24.75	0.00	44.77	3.53
351	352	3.558282	GACGTTGCGCGACTGTTGG	62.558	63.158	24.75	11.70	44.77	3.77
352	353	2.128128	GACGTTGCGCGACTGTTG	60.128	61.111	24.75	12.07	44.77	3.33
353	354	3.335534	GGACGTTGCGCGACTGTT	61.336	61.111	24.75	9.50	44.77	3.16
354	355	4.280494	AGGACGTTGCGCGACTGT	62.280	61.111	24.75	22.24	44.77	3.55
355	356	3.767230	CAGGACGTTGCGCGACTG	61.767	66.667	24.75	19.43	44.77	3.51
368	369	1.608025	CCTGACTTTTAGTGCGCAGGA	60.608	52.381	12.22	0.00	39.03	3.86
369	370	0.798776	CCTGACTTTTAGTGCGCAGG	59.201	55.000	12.22	0.00	33.31	4.85
370	371	1.795768	TCCTGACTTTTAGTGCGCAG	58.204	50.000	12.22	0.00	0.00	5.18
371	372	2.472695	ATCCTGACTTTTAGTGCGCA	57.527	45.000	5.66	5.66	0.00	6.09
372	373	3.259064	TGTATCCTGACTTTTAGTGCGC	58.741	45.455	0.00	0.00	0.00	6.09
373	374	3.307242	GCTGTATCCTGACTTTTAGTGCG	59.693	47.826	0.00	0.00	0.00	5.34
374	375	3.307242	CGCTGTATCCTGACTTTTAGTGC	59.693	47.826	0.00	0.00	0.00	4.40
375	376	3.307242	GCGCTGTATCCTGACTTTTAGTG	59.693	47.826	0.00	0.00	0.00	2.74
376	377	3.522553	GCGCTGTATCCTGACTTTTAGT	58.477	45.455	0.00	0.00	0.00	2.24
377	378	2.866762	GGCGCTGTATCCTGACTTTTAG	59.133	50.000	7.64	0.00	0.00	1.85
378	379	2.737359	CGGCGCTGTATCCTGACTTTTA	60.737	50.000	8.45	0.00	0.00	1.52
379	380	1.739067	GGCGCTGTATCCTGACTTTT	58.261	50.000	7.64	0.00	0.00	2.27
380	381	0.460284	CGGCGCTGTATCCTGACTTT	60.460	55.000	8.45	0.00	0.00	2.66
381	382	1.141881	CGGCGCTGTATCCTGACTT	59.858	57.895	8.45	0.00	0.00	3.01
382	383	2.786495	CCGGCGCTGTATCCTGACT	61.786	63.158	16.49	0.00	0.00	3.41
383	384	2.279517	CCGGCGCTGTATCCTGAC	60.280	66.667	16.49	0.00	0.00	3.51
384	385	3.536917	CCCGGCGCTGTATCCTGA	61.537	66.667	16.49	0.00	0.00	3.86
385	386	3.849951	ACCCGGCGCTGTATCCTG	61.850	66.667	16.49	0.00	0.00	3.86
386	387	3.849951	CACCCGGCGCTGTATCCT	61.850	66.667	16.49	0.00	0.00	3.24
387	388	3.792053	CTCACCCGGCGCTGTATCC	62.792	68.421	16.49	0.00	0.00	2.59
388	389	2.279517	CTCACCCGGCGCTGTATC	60.280	66.667	16.49	0.00	0.00	2.24
389	390	4.530857	GCTCACCCGGCGCTGTAT	62.531	66.667	16.49	0.00	0.00	2.29
396	397	4.660938	AAACCTGGCTCACCCGGC	62.661	66.667	0.00	0.00	38.79	6.13
397	398	2.115266	AAAACCTGGCTCACCCGG	59.885	61.111	0.00	0.00	39.92	5.73
398	399	2.919494	GCAAAACCTGGCTCACCCG	61.919	63.158	0.00	0.00	35.87	5.28
399	400	2.919494	CGCAAAACCTGGCTCACCC	61.919	63.158	0.00	0.00	33.59	4.61
400	401	2.644992	CGCAAAACCTGGCTCACC	59.355	61.111	0.00	0.00	0.00	4.02
401	402	2.050077	GCGCAAAACCTGGCTCAC	60.050	61.111	0.30	0.00	0.00	3.51
402	403	3.659092	CGCGCAAAACCTGGCTCA	61.659	61.111	8.75	0.00	0.00	4.26
441	442	2.164663	GCTTTATTTTGCGGCGGCC	61.165	57.895	14.25	9.54	38.85	6.13
442	443	3.383861	GCTTTATTTTGCGGCGGC	58.616	55.556	9.78	9.68	40.52	6.53
448	449	2.504653	CGGGCGCGCTTTATTTTGC	61.505	57.895	32.29	10.56	0.00	3.68
449	450	0.861450	CTCGGGCGCGCTTTATTTTG	60.861	55.000	32.29	11.57	0.00	2.44
450	451	1.427819	CTCGGGCGCGCTTTATTTT	59.572	52.632	32.29	0.00	0.00	1.82
451	452	3.098555	CTCGGGCGCGCTTTATTT	58.901	55.556	32.29	0.00	0.00	1.40
452	453	3.573491	GCTCGGGCGCGCTTTATT	61.573	61.111	32.29	0.00	0.00	1.40
472	473	0.668706	ATATAGCGCGCTTGCTGGAG	60.669	55.000	41.04	0.00	46.70	3.86
473	474	0.249868	AATATAGCGCGCTTGCTGGA	60.250	50.000	41.04	21.34	46.70	3.86
474	475	0.588252	AAATATAGCGCGCTTGCTGG	59.412	50.000	41.04	0.00	46.70	4.85
475	476	2.039085	CAAAATATAGCGCGCTTGCTG	58.961	47.619	41.04	22.36	46.70	4.41
477	478	2.105323	ACAAAATATAGCGCGCTTGC	57.895	45.000	41.04	5.93	0.00	4.01
478	479	4.190304	TGTACAAAATATAGCGCGCTTG	57.810	40.909	41.04	30.62	0.00	4.01
479	480	5.694910	ACTATGTACAAAATATAGCGCGCTT	59.305	36.000	41.04	27.21	0.00	4.68
480	481	5.227908	ACTATGTACAAAATATAGCGCGCT	58.772	37.500	38.01	38.01	0.00	5.92
481	482	5.511088	ACTATGTACAAAATATAGCGCGC	57.489	39.130	26.66	26.66	0.00	6.86
482	483	7.114388	TGAGAACTATGTACAAAATATAGCGCG	59.886	37.037	0.00	0.00	0.00	6.86
483	484	8.294341	TGAGAACTATGTACAAAATATAGCGC	57.706	34.615	0.00	0.00	0.00	5.92
492	493	9.436957	GGAGAAGAATTGAGAACTATGTACAAA	57.563	33.333	0.00	0.00	0.00	2.83
493	494	8.816894	AGGAGAAGAATTGAGAACTATGTACAA	58.183	33.333	0.00	0.00	0.00	2.41
494	495	8.367660	AGGAGAAGAATTGAGAACTATGTACA	57.632	34.615	0.00	0.00	0.00	2.90
495	496	9.738832	GTAGGAGAAGAATTGAGAACTATGTAC	57.261	37.037	0.00	0.00	0.00	2.90
496	497	9.475620	TGTAGGAGAAGAATTGAGAACTATGTA	57.524	33.333	0.00	0.00	0.00	2.29
497	498	8.367660	TGTAGGAGAAGAATTGAGAACTATGT	57.632	34.615	0.00	0.00	0.00	2.29
498	499	9.829507	ATTGTAGGAGAAGAATTGAGAACTATG	57.170	33.333	0.00	0.00	0.00	2.23
501	502	8.816894	TGTATTGTAGGAGAAGAATTGAGAACT	58.183	33.333	0.00	0.00	0.00	3.01
502	503	9.606631	ATGTATTGTAGGAGAAGAATTGAGAAC	57.393	33.333	0.00	0.00	0.00	3.01
525	526	9.993454	TCGTAGAACTATGTACTATGACTATGT	57.007	33.333	0.00	0.00	30.44	2.29
529	530	9.993454	TGTATCGTAGAACTATGTACTATGACT	57.007	33.333	0.00	0.00	43.58	3.41
536	537	9.379811	GCTTAGTTGTATCGTAGAACTATGTAC	57.620	37.037	17.87	0.00	42.02	2.90
537	538	8.278408	CGCTTAGTTGTATCGTAGAACTATGTA	58.722	37.037	17.87	6.98	42.02	2.29
538	539	7.130917	CGCTTAGTTGTATCGTAGAACTATGT	58.869	38.462	17.87	0.00	42.02	2.29
539	540	7.130917	ACGCTTAGTTGTATCGTAGAACTATG	58.869	38.462	12.24	13.93	42.02	2.23
540	541	7.256756	ACGCTTAGTTGTATCGTAGAACTAT	57.743	36.000	12.24	0.98	42.02	2.12
541	542	6.668541	ACGCTTAGTTGTATCGTAGAACTA	57.331	37.500	9.25	9.25	43.58	2.24
542	543	5.557891	ACGCTTAGTTGTATCGTAGAACT	57.442	39.130	10.66	10.66	43.58	3.01
543	544	6.250819	TGTACGCTTAGTTGTATCGTAGAAC	58.749	40.000	0.00	0.00	43.58	3.01
544	545	6.421377	TGTACGCTTAGTTGTATCGTAGAA	57.579	37.500	0.00	0.00	43.58	2.10
545	546	6.609237	ATGTACGCTTAGTTGTATCGTAGA	57.391	37.500	0.00	0.00	45.75	2.59
546	547	7.571026	ACTATGTACGCTTAGTTGTATCGTAG	58.429	38.462	0.00	0.00	36.49	3.51
547	548	7.482654	ACTATGTACGCTTAGTTGTATCGTA	57.517	36.000	0.00	0.00	33.46	3.43
548	549	6.369059	ACTATGTACGCTTAGTTGTATCGT	57.631	37.500	0.00	0.00	33.46	3.73
549	550	7.130917	AGAACTATGTACGCTTAGTTGTATCG	58.869	38.462	16.05	0.00	42.17	2.92
550	551	9.596677	CTAGAACTATGTACGCTTAGTTGTATC	57.403	37.037	16.05	6.26	42.17	2.24
551	552	9.118300	ACTAGAACTATGTACGCTTAGTTGTAT	57.882	33.333	16.05	8.02	42.17	2.29
552	553	8.498054	ACTAGAACTATGTACGCTTAGTTGTA	57.502	34.615	16.05	14.99	42.17	2.41
553	554	7.336427	AGACTAGAACTATGTACGCTTAGTTGT	59.664	37.037	16.05	14.75	42.17	3.32
554	555	7.695820	AGACTAGAACTATGTACGCTTAGTTG	58.304	38.462	16.05	8.10	42.17	3.16
555	556	7.862512	AGACTAGAACTATGTACGCTTAGTT	57.137	36.000	12.75	12.75	43.68	2.24
556	557	7.769970	AGAAGACTAGAACTATGTACGCTTAGT	59.230	37.037	0.00	0.00	37.23	2.24
557	558	8.145316	AGAAGACTAGAACTATGTACGCTTAG	57.855	38.462	0.00	0.00	0.00	2.18
558	559	7.226325	GGAGAAGACTAGAACTATGTACGCTTA	59.774	40.741	0.00	0.00	0.00	3.09
559	560	6.038492	GGAGAAGACTAGAACTATGTACGCTT	59.962	42.308	0.00	0.00	0.00	4.68
560	561	5.528320	GGAGAAGACTAGAACTATGTACGCT	59.472	44.000	0.00	0.00	0.00	5.07
561	562	5.528320	AGGAGAAGACTAGAACTATGTACGC	59.472	44.000	0.00	0.00	0.00	4.42
562	563	7.710044	TGTAGGAGAAGACTAGAACTATGTACG	59.290	40.741	0.00	0.00	0.00	3.67
563	564	8.961294	TGTAGGAGAAGACTAGAACTATGTAC	57.039	38.462	0.00	0.00	0.00	2.90
572	573	9.781633	GACTATGTATTGTAGGAGAAGACTAGA	57.218	37.037	0.00	0.00	0.00	2.43
573	574	9.787435	AGACTATGTATTGTAGGAGAAGACTAG	57.213	37.037	0.00	0.00	0.00	2.57
574	575	9.781633	GAGACTATGTATTGTAGGAGAAGACTA	57.218	37.037	0.00	0.00	0.00	2.59
575	576	8.275758	TGAGACTATGTATTGTAGGAGAAGACT	58.724	37.037	0.00	0.00	0.00	3.24
576	577	8.347035	GTGAGACTATGTATTGTAGGAGAAGAC	58.653	40.741	0.00	0.00	0.00	3.01
577	578	8.053355	TGTGAGACTATGTATTGTAGGAGAAGA	58.947	37.037	0.00	0.00	0.00	2.87
578	579	8.226819	TGTGAGACTATGTATTGTAGGAGAAG	57.773	38.462	0.00	0.00	0.00	2.85
579	580	8.768501	ATGTGAGACTATGTATTGTAGGAGAA	57.231	34.615	0.00	0.00	0.00	2.87
580	581	9.508642	CTATGTGAGACTATGTATTGTAGGAGA	57.491	37.037	0.00	0.00	0.00	3.71
581	582	9.508642	TCTATGTGAGACTATGTATTGTAGGAG	57.491	37.037	0.00	0.00	0.00	3.69
582	583	9.862149	TTCTATGTGAGACTATGTATTGTAGGA	57.138	33.333	0.00	0.00	32.31	2.94
583	584	9.900710	GTTCTATGTGAGACTATGTATTGTAGG	57.099	37.037	0.00	0.00	32.31	3.18
591	592	9.550406	GAGTAGTAGTTCTATGTGAGACTATGT	57.450	37.037	0.00	0.00	32.31	2.29
592	593	8.705134	CGAGTAGTAGTTCTATGTGAGACTATG	58.295	40.741	0.00	0.00	32.31	2.23
593	594	8.423349	ACGAGTAGTAGTTCTATGTGAGACTAT	58.577	37.037	0.00	0.00	32.31	2.12
594	595	7.780064	ACGAGTAGTAGTTCTATGTGAGACTA	58.220	38.462	0.00	0.00	32.31	2.59
595	596	6.642430	ACGAGTAGTAGTTCTATGTGAGACT	58.358	40.000	0.00	0.00	32.31	3.24
596	597	6.534436	TGACGAGTAGTAGTTCTATGTGAGAC	59.466	42.308	0.00	0.00	32.31	3.36
597	598	6.637657	TGACGAGTAGTAGTTCTATGTGAGA	58.362	40.000	0.00	0.00	0.00	3.27
598	599	6.905544	TGACGAGTAGTAGTTCTATGTGAG	57.094	41.667	0.00	0.00	0.00	3.51
599	600	7.769507	AGAATGACGAGTAGTAGTTCTATGTGA	59.230	37.037	0.00	0.00	35.91	3.58
600	601	7.921787	AGAATGACGAGTAGTAGTTCTATGTG	58.078	38.462	0.00	0.00	35.91	3.21
601	602	7.227116	GGAGAATGACGAGTAGTAGTTCTATGT	59.773	40.741	0.00	0.00	37.02	2.29
602	603	7.569774	CGGAGAATGACGAGTAGTAGTTCTATG	60.570	44.444	0.00	0.00	37.02	2.23
603	604	6.424509	CGGAGAATGACGAGTAGTAGTTCTAT	59.575	42.308	0.00	0.00	37.02	1.98
604	605	5.752472	CGGAGAATGACGAGTAGTAGTTCTA	59.248	44.000	0.00	0.00	37.02	2.10
605	606	4.571580	CGGAGAATGACGAGTAGTAGTTCT	59.428	45.833	0.00	3.45	38.52	3.01
606	607	4.569966	TCGGAGAATGACGAGTAGTAGTTC	59.430	45.833	0.00	0.00	34.67	3.01
607	608	4.332268	GTCGGAGAATGACGAGTAGTAGTT	59.668	45.833	0.00	0.00	39.69	2.24
608	609	3.870419	GTCGGAGAATGACGAGTAGTAGT	59.130	47.826	0.00	0.00	39.69	2.73
609	610	4.121317	AGTCGGAGAATGACGAGTAGTAG	58.879	47.826	0.00	0.00	40.62	2.57
610	611	4.134379	AGTCGGAGAATGACGAGTAGTA	57.866	45.455	0.00	0.00	40.62	1.82
611	612	2.988570	AGTCGGAGAATGACGAGTAGT	58.011	47.619	0.00	0.00	40.62	2.73
612	613	3.487711	CCAAGTCGGAGAATGACGAGTAG	60.488	52.174	0.00	0.00	41.46	2.57
613	614	2.422479	CCAAGTCGGAGAATGACGAGTA	59.578	50.000	0.00	0.00	41.46	2.59
614	615	1.202582	CCAAGTCGGAGAATGACGAGT	59.797	52.381	0.00	0.00	43.90	4.18
615	616	1.472878	TCCAAGTCGGAGAATGACGAG	59.527	52.381	0.00	0.00	39.64	4.18
616	617	1.541379	TCCAAGTCGGAGAATGACGA	58.459	50.000	0.00	0.00	39.64	4.20
625	626	1.613925	CAAGACAGAGTCCAAGTCGGA	59.386	52.381	0.00	0.00	43.61	4.55
626	627	1.337260	CCAAGACAGAGTCCAAGTCGG	60.337	57.143	0.00	0.00	37.36	4.79
627	628	1.341531	ACCAAGACAGAGTCCAAGTCG	59.658	52.381	0.00	0.00	37.36	4.18
628	629	2.365617	TCACCAAGACAGAGTCCAAGTC	59.634	50.000	0.00	0.95	32.18	3.01
629	630	2.398588	TCACCAAGACAGAGTCCAAGT	58.601	47.619	0.00	0.00	32.18	3.16
630	631	3.244353	ACATCACCAAGACAGAGTCCAAG	60.244	47.826	0.00	0.00	32.18	3.61
631	632	2.705658	ACATCACCAAGACAGAGTCCAA	59.294	45.455	0.00	0.00	32.18	3.53
632	633	2.300152	GACATCACCAAGACAGAGTCCA	59.700	50.000	0.00	0.00	32.18	4.02
633	634	2.354203	GGACATCACCAAGACAGAGTCC	60.354	54.545	0.00	0.00	37.70	3.85
634	635	2.564947	AGGACATCACCAAGACAGAGTC	59.435	50.000	0.00	0.00	0.00	3.36
635	636	2.564947	GAGGACATCACCAAGACAGAGT	59.435	50.000	0.00	0.00	0.00	3.24
636	637	2.093764	GGAGGACATCACCAAGACAGAG	60.094	54.545	0.00	0.00	0.00	3.35
637	638	1.902508	GGAGGACATCACCAAGACAGA	59.097	52.381	0.00	0.00	0.00	3.41
638	639	1.905215	AGGAGGACATCACCAAGACAG	59.095	52.381	0.00	0.00	0.00	3.51
639	640	1.902508	GAGGAGGACATCACCAAGACA	59.097	52.381	0.00	0.00	0.00	3.41
640	641	1.902508	TGAGGAGGACATCACCAAGAC	59.097	52.381	0.00	0.00	31.79	3.01
641	642	2.325661	TGAGGAGGACATCACCAAGA	57.674	50.000	0.00	0.00	31.79	3.02
642	643	3.077359	GTTTGAGGAGGACATCACCAAG	58.923	50.000	0.00	0.00	36.55	3.61
643	644	2.549992	CGTTTGAGGAGGACATCACCAA	60.550	50.000	0.00	0.00	36.55	3.67
644	645	1.001974	CGTTTGAGGAGGACATCACCA	59.998	52.381	0.00	0.00	36.55	4.17
645	646	1.002087	ACGTTTGAGGAGGACATCACC	59.998	52.381	0.00	0.00	36.55	4.02
646	647	2.457366	ACGTTTGAGGAGGACATCAC	57.543	50.000	0.00	0.00	36.55	3.06
647	648	3.138304	CAAACGTTTGAGGAGGACATCA	58.862	45.455	32.36	0.00	40.55	3.07
648	649	3.399330	TCAAACGTTTGAGGAGGACATC	58.601	45.455	33.86	0.00	41.88	3.06
649	650	3.485463	TCAAACGTTTGAGGAGGACAT	57.515	42.857	33.86	0.00	41.88	3.06
650	651	2.992124	TCAAACGTTTGAGGAGGACA	57.008	45.000	33.86	14.10	41.88	4.02
658	659	1.463056	CGCCTATGCTCAAACGTTTGA	59.537	47.619	34.56	34.56	44.31	2.69
659	660	1.196808	ACGCCTATGCTCAAACGTTTG	59.803	47.619	30.63	30.63	39.48	2.93
660	661	1.463444	GACGCCTATGCTCAAACGTTT	59.537	47.619	7.96	7.96	33.31	3.60
661	662	1.076332	GACGCCTATGCTCAAACGTT	58.924	50.000	0.00	0.00	33.31	3.99
662	663	0.037697	TGACGCCTATGCTCAAACGT	60.038	50.000	0.00	0.00	36.30	3.99
663	664	1.075542	TTGACGCCTATGCTCAAACG	58.924	50.000	3.63	0.00	34.17	3.60
664	665	2.742053	TCTTTGACGCCTATGCTCAAAC	59.258	45.455	10.95	0.00	38.50	2.93
665	666	3.052455	TCTTTGACGCCTATGCTCAAA	57.948	42.857	12.97	12.97	39.77	2.69
666	667	2.742053	GTTCTTTGACGCCTATGCTCAA	59.258	45.455	0.00	2.44	34.80	3.02
667	668	2.346803	GTTCTTTGACGCCTATGCTCA	58.653	47.619	0.00	0.00	34.43	4.26
668	669	1.666189	GGTTCTTTGACGCCTATGCTC	59.334	52.381	0.00	0.00	34.43	4.26
669	670	1.739067	GGTTCTTTGACGCCTATGCT	58.261	50.000	0.00	0.00	34.43	3.79
670	671	0.373716	CGGTTCTTTGACGCCTATGC	59.626	55.000	0.00	0.00	0.00	3.14
671	672	2.004583	TCGGTTCTTTGACGCCTATG	57.995	50.000	0.00	0.00	0.00	2.23
672	673	2.167693	TGATCGGTTCTTTGACGCCTAT	59.832	45.455	0.00	0.00	0.00	2.57
673	674	1.546923	TGATCGGTTCTTTGACGCCTA	59.453	47.619	0.00	0.00	0.00	3.93
674	675	0.320374	TGATCGGTTCTTTGACGCCT	59.680	50.000	0.00	0.00	0.00	5.52
675	676	1.327764	GATGATCGGTTCTTTGACGCC	59.672	52.381	0.00	0.00	0.00	5.68
676	677	1.999735	TGATGATCGGTTCTTTGACGC	59.000	47.619	0.00	0.00	0.00	5.19
677	678	3.246226	GGATGATGATCGGTTCTTTGACG	59.754	47.826	0.00	0.00	0.00	4.35
678	679	3.561725	GGGATGATGATCGGTTCTTTGAC	59.438	47.826	0.00	0.00	0.00	3.18
679	680	3.199727	TGGGATGATGATCGGTTCTTTGA	59.800	43.478	0.00	0.00	0.00	2.69
680	681	3.544684	TGGGATGATGATCGGTTCTTTG	58.455	45.455	0.00	0.00	0.00	2.77
681	682	3.434167	CCTGGGATGATGATCGGTTCTTT	60.434	47.826	0.00	0.00	0.00	2.52
682	683	2.105477	CCTGGGATGATGATCGGTTCTT	59.895	50.000	0.00	0.00	0.00	2.52
683	684	1.696336	CCTGGGATGATGATCGGTTCT	59.304	52.381	0.00	0.00	0.00	3.01
684	685	1.694150	TCCTGGGATGATGATCGGTTC	59.306	52.381	0.00	0.00	0.00	3.62
685	686	1.417890	GTCCTGGGATGATGATCGGTT	59.582	52.381	0.00	0.00	0.00	4.44
686	687	1.051812	GTCCTGGGATGATGATCGGT	58.948	55.000	0.00	0.00	0.00	4.69
687	688	0.037882	CGTCCTGGGATGATGATCGG	60.038	60.000	2.87	0.00	33.22	4.18
688	689	0.961753	TCGTCCTGGGATGATGATCG	59.038	55.000	7.39	0.00	35.47	3.69
689	690	1.336332	CGTCGTCCTGGGATGATGATC	60.336	57.143	20.57	6.27	45.26	2.92
690	691	0.676184	CGTCGTCCTGGGATGATGAT	59.324	55.000	20.57	0.00	45.26	2.45
691	692	2.016393	GCGTCGTCCTGGGATGATGA	62.016	60.000	26.34	7.28	45.26	2.92
692	693	1.592669	GCGTCGTCCTGGGATGATG	60.593	63.158	20.77	20.77	45.23	3.07
693	694	1.402896	ATGCGTCGTCCTGGGATGAT	61.403	55.000	13.78	0.00	41.50	2.45
694	695	2.016393	GATGCGTCGTCCTGGGATGA	62.016	60.000	7.39	7.39	37.77	2.92
695	696	1.592669	GATGCGTCGTCCTGGGATG	60.593	63.158	2.60	2.60	0.00	3.51
696	697	1.739338	GAGATGCGTCGTCCTGGGAT	61.739	60.000	0.00	0.00	0.00	3.85
697	698	2.362503	AGATGCGTCGTCCTGGGA	60.363	61.111	0.00	0.00	0.00	4.37
698	699	2.105128	GAGATGCGTCGTCCTGGG	59.895	66.667	0.00	0.00	0.00	4.45
699	700	1.101635	TAGGAGATGCGTCGTCCTGG	61.102	60.000	25.28	0.00	41.05	4.45
700	701	0.309302	CTAGGAGATGCGTCGTCCTG	59.691	60.000	25.28	16.33	41.05	3.86
701	702	1.448922	GCTAGGAGATGCGTCGTCCT	61.449	60.000	22.51	22.51	43.43	3.85
702	703	1.008309	GCTAGGAGATGCGTCGTCC	60.008	63.158	13.55	13.55	0.00	4.79
703	704	1.369448	CGCTAGGAGATGCGTCGTC	60.369	63.158	0.00	0.00	46.09	4.20
704	705	2.716244	CGCTAGGAGATGCGTCGT	59.284	61.111	0.00	0.00	46.09	4.34
709	710	0.533755	AACATGGCGCTAGGAGATGC	60.534	55.000	13.72	0.00	0.00	3.91
710	711	1.224075	CAACATGGCGCTAGGAGATG	58.776	55.000	13.72	0.25	0.00	2.90
711	712	0.833287	ACAACATGGCGCTAGGAGAT	59.167	50.000	13.72	0.00	0.00	2.75
712	713	1.480789	TACAACATGGCGCTAGGAGA	58.519	50.000	13.72	0.00	0.00	3.71
713	714	2.533266	ATACAACATGGCGCTAGGAG	57.467	50.000	13.72	6.76	0.00	3.69
714	715	2.942376	CAAATACAACATGGCGCTAGGA	59.058	45.455	13.72	0.00	0.00	2.94
715	716	2.682856	ACAAATACAACATGGCGCTAGG	59.317	45.455	7.64	5.30	0.00	3.02
716	717	4.355543	AACAAATACAACATGGCGCTAG	57.644	40.909	7.64	0.00	0.00	3.42
717	718	5.644206	TCTTAACAAATACAACATGGCGCTA	59.356	36.000	7.64	0.00	0.00	4.26
718	719	4.457603	TCTTAACAAATACAACATGGCGCT	59.542	37.500	7.64	0.00	0.00	5.92
719	720	4.728534	TCTTAACAAATACAACATGGCGC	58.271	39.130	0.00	0.00	0.00	6.53
720	721	8.903570	TTATTCTTAACAAATACAACATGGCG	57.096	30.769	0.00	0.00	0.00	5.69
725	726	9.601971	GTCGCTTTATTCTTAACAAATACAACA	57.398	29.630	0.00	0.00	0.00	3.33
731	732	5.106475	TGGCGTCGCTTTATTCTTAACAAAT	60.106	36.000	18.11	0.00	0.00	2.32
753	754	2.223502	TGACGACTCTTAGCGCTAATGG	60.224	50.000	28.85	23.96	0.00	3.16
778	779	2.726691	CGTACGGCGCTTTGGACAG	61.727	63.158	6.90	0.00	0.00	3.51
961	984	1.670811	CTTGTTCGTGCTCTGTTGGTT	59.329	47.619	0.00	0.00	0.00	3.67
989	1012	0.622665	CCCTGCCATCTCACCTTCTT	59.377	55.000	0.00	0.00	0.00	2.52
1165	1206	3.630013	TTCTGCCTGCTCTGCGGT	61.630	61.111	0.00	0.00	36.47	5.68
1181	1222	1.187567	GGCAGATGGGTTGCTTGGTT	61.188	55.000	0.00	0.00	41.27	3.67
1230	1271	1.814772	TTTCCAACAAGGCCGGCATG	61.815	55.000	30.85	27.39	37.29	4.06
1234	1275	1.202405	GCATATTTCCAACAAGGCCGG	60.202	52.381	0.00	0.00	37.29	6.13
1235	1276	1.202405	GGCATATTTCCAACAAGGCCG	60.202	52.381	0.00	0.00	37.29	6.13
1236	1277	1.138859	GGGCATATTTCCAACAAGGCC	59.861	52.381	0.00	0.00	39.40	5.19
1237	1278	2.110578	AGGGCATATTTCCAACAAGGC	58.889	47.619	0.00	0.00	37.29	4.35
1238	1279	4.792068	TCTAGGGCATATTTCCAACAAGG	58.208	43.478	0.00	0.00	39.47	3.61
1318	1359	9.733556	ATTTCCGGATAACACAATTATAGCATA	57.266	29.630	4.15	0.00	0.00	3.14
2038	2079	2.007608	CAGACATGACCGAGACGACTA	58.992	52.381	0.00	0.00	0.00	2.59
2332	2375	2.543797	CCTTGCCCCCACTACCCAA	61.544	63.158	0.00	0.00	0.00	4.12
2417	2460	5.814705	CCTTCGGGATATGCTTGATCTTATC	59.185	44.000	0.00	0.00	37.25	1.75
2483	2568	0.778078	TCCCACCATTTCCCTTCCCA	60.778	55.000	0.00	0.00	0.00	4.37
3024	3130	6.072342	TGTTCTACTCGTGCATAGAAACTACA	60.072	38.462	8.67	2.28	38.74	2.74
3076	3182	4.642429	ACTAGTAGTGGCAAGAAAGTTGG	58.358	43.478	0.85	0.00	0.00	3.77
4104	4217	3.056749	GGACTAGTCAACATCGGTGAACT	60.057	47.826	23.91	5.52	0.00	3.01
4127	4240	2.024414	TGTCCGATCATCACGTGAGAT	58.976	47.619	24.41	23.15	40.92	2.75
4188	4301	2.632028	CCCACTCAGATAGACATCCCTG	59.368	54.545	0.00	0.00	0.00	4.45
4482	4601	2.544685	GAGTAATCATCAGCACGCTGT	58.455	47.619	18.05	3.88	43.96	4.40
5273	9886	0.332632	TTCTTGATCCAGCAAGGGGG	59.667	55.000	4.79	0.00	44.14	5.40
5314	9927	1.481019	CCGCGTTCAACACACGTACA	61.481	55.000	4.92	0.00	39.92	2.90
5339	9952	4.847516	CGAGCGCCGAATGGACGA	62.848	66.667	2.29	0.00	41.76	4.20
5345	9958	2.279517	GATGACCGAGCGCCGAAT	60.280	61.111	17.96	9.45	41.76	3.34
5390	10003	1.061546	AAGTGTACGGGGTTGATGGT	58.938	50.000	0.00	0.00	0.00	3.55
5404	10017	1.603172	CGAGCGGAAGAGTTCAAGTGT	60.603	52.381	0.00	0.00	0.00	3.55
5414	10027	1.093496	TGTAGATCGCGAGCGGAAGA	61.093	55.000	19.77	4.40	40.25	2.87
5453	10066	4.023536	GTCTTCTAGCAACGAGAGGGATAG	60.024	50.000	0.00	0.00	32.24	2.08
5455	10068	2.691011	GTCTTCTAGCAACGAGAGGGAT	59.309	50.000	0.00	0.00	0.00	3.85
5464	10077	6.578023	ACAATCTATGGAGTCTTCTAGCAAC	58.422	40.000	0.00	0.00	0.00	4.17
5508	10121	5.186797	TGGGGATCGTTGCAGAAATTAAAAT	59.813	36.000	0.00	0.00	0.00	1.82
5529	10143	2.742372	CGACGAAGGCCTGTTGGG	60.742	66.667	5.69	0.00	38.36	4.12
5803	10417	2.040606	GGGAGGTCTGGGTAGGCA	59.959	66.667	0.00	0.00	0.00	4.75
5812	10426	3.692406	GTCGGCGTTGGGAGGTCT	61.692	66.667	6.85	0.00	0.00	3.85
5881	15964	2.745308	CCACTCCATCATGGCGGGA	61.745	63.158	0.00	0.00	37.47	5.14
6226	16311	0.397816	ATCTTCAGGAGGAGGACGGG	60.398	60.000	0.00	0.00	34.05	5.28
6761	17110	3.542310	GCTGCAATTCCGTCGATTTTAAC	59.458	43.478	0.00	0.00	0.00	2.01
6764	17113	1.812571	AGCTGCAATTCCGTCGATTTT	59.187	42.857	1.02	0.00	0.00	1.82
6765	17114	1.453155	AGCTGCAATTCCGTCGATTT	58.547	45.000	1.02	0.00	0.00	2.17
6766	17115	2.309528	TAGCTGCAATTCCGTCGATT	57.690	45.000	1.02	0.00	0.00	3.34
6767	17116	2.138320	CATAGCTGCAATTCCGTCGAT	58.862	47.619	1.02	0.00	0.00	3.59
6769	17118	0.583438	CCATAGCTGCAATTCCGTCG	59.417	55.000	1.02	0.00	0.00	5.12
6770	17119	1.953559	TCCATAGCTGCAATTCCGTC	58.046	50.000	1.02	0.00	0.00	4.79
6771	17120	2.224606	CATCCATAGCTGCAATTCCGT	58.775	47.619	1.02	0.00	0.00	4.69
6772	17121	2.224606	ACATCCATAGCTGCAATTCCG	58.775	47.619	1.02	0.00	0.00	4.30
6773	17122	5.772825	TTAACATCCATAGCTGCAATTCC	57.227	39.130	1.02	0.00	0.00	3.01
6774	17123	7.922278	TGATTTTAACATCCATAGCTGCAATTC	59.078	33.333	1.02	0.00	0.00	2.17
6778	17127	5.887598	ACTGATTTTAACATCCATAGCTGCA	59.112	36.000	1.02	0.00	0.00	4.41
6779	17128	6.261826	AGACTGATTTTAACATCCATAGCTGC	59.738	38.462	0.00	0.00	0.00	5.25
6780	17129	7.798596	AGACTGATTTTAACATCCATAGCTG	57.201	36.000	0.00	0.00	0.00	4.24
6894	17596	8.704849	ATGGTGCCTTATTATGTATAAAGCAA	57.295	30.769	7.06	0.00	43.95	3.91
7201	17905	0.675208	TGCGGGCACGATATTGTTGT	60.675	50.000	15.48	0.00	44.60	3.32

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.