Multiple sequence alignment - TraesCS6D01G058200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G058200 chr6D 100.000 5015 0 0 1 5015 27524668 27519654 0.000000e+00 9262
1 TraesCS6D01G058200 chr6A 92.797 4415 171 38 1 4340 30463695 30468037 0.000000e+00 6255
2 TraesCS6D01G058200 chr6A 89.091 110 12 0 4381 4490 30468140 30468249 2.430000e-28 137
3 TraesCS6D01G058200 chr6B 93.161 2164 92 18 255 2388 51218912 51216775 0.000000e+00 3125
4 TraesCS6D01G058200 chr6B 93.588 1809 77 18 2479 4269 51216765 51214978 0.000000e+00 2662
5 TraesCS6D01G058200 chr6B 85.197 1216 122 27 2841 4045 50396227 50397395 0.000000e+00 1195
6 TraesCS6D01G058200 chr6B 93.204 206 12 2 1 204 51220407 51220202 8.160000e-78 302
7 TraesCS6D01G058200 chr6B 96.667 60 2 0 208 267 51220175 51220116 3.190000e-17 100
8 TraesCS6D01G058200 chr4A 82.658 888 120 20 3112 3990 157561743 157562605 0.000000e+00 756
9 TraesCS6D01G058200 chr4B 84.423 719 99 10 3304 4013 394384780 394384066 0.000000e+00 695
10 TraesCS6D01G058200 chr2B 81.923 260 29 12 2367 2610 225571368 225571625 2.370000e-48 204
11 TraesCS6D01G058200 chr2B 80.876 251 31 8 2372 2605 717484142 717484392 1.110000e-41 182
12 TraesCS6D01G058200 chr1A 81.176 255 31 10 2373 2610 412454621 412454367 6.630000e-44 189
13 TraesCS6D01G058200 chr7B 80.153 262 31 7 2367 2610 24403905 24404163 5.160000e-40 176
14 TraesCS6D01G058200 chr2A 80.162 247 31 15 2373 2610 634615549 634615786 8.630000e-38 169
15 TraesCS6D01G058200 chr1D 78.210 257 37 11 2373 2610 326280846 326280590 4.050000e-31 147
16 TraesCS6D01G058200 chr5A 82.609 161 18 7 2424 2583 672828811 672828660 3.150000e-27 134
17 TraesCS6D01G058200 chr5D 78.873 213 27 9 2364 2558 465372949 465373161 1.470000e-25 128
18 TraesCS6D01G058200 chr3A 77.328 247 35 14 2360 2588 100888992 100889235 5.270000e-25 126
19 TraesCS6D01G058200 chr5B 85.321 109 14 2 2363 2469 572598962 572599070 1.480000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G058200 chr6D 27519654 27524668 5014 True 9262.00 9262 100.000 1 5015 1 chr6D.!!$R1 5014
1 TraesCS6D01G058200 chr6A 30463695 30468249 4554 False 3196.00 6255 90.944 1 4490 2 chr6A.!!$F1 4489
2 TraesCS6D01G058200 chr6B 51214978 51220407 5429 True 1547.25 3125 94.155 1 4269 4 chr6B.!!$R1 4268
3 TraesCS6D01G058200 chr6B 50396227 50397395 1168 False 1195.00 1195 85.197 2841 4045 1 chr6B.!!$F1 1204
4 TraesCS6D01G058200 chr4A 157561743 157562605 862 False 756.00 756 82.658 3112 3990 1 chr4A.!!$F1 878
5 TraesCS6D01G058200 chr4B 394384066 394384780 714 True 695.00 695 84.423 3304 4013 1 chr4B.!!$R1 709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 2083 0.581529 CCATGGCGTACAAGTATGCG 59.418 55.000 15.85 5.02 46.23 4.73 F
2284 3572 1.334960 CGTTGCAAAAGCGACCATCTT 60.335 47.619 0.00 0.00 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2332 3620 1.528586 GTGCAAGTGTGTGCTACTGAG 59.471 52.381 0.0 0.0 45.17 3.35 R
4237 5575 0.106769 TGTGACAGCAAAAGCAGGGA 60.107 50.000 0.0 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 65 3.741388 GCCGCTAGATATCAACTGTGGTT 60.741 47.826 5.32 0.00 35.86 3.67
69 72 9.331282 GCTAGATATCAACTGTGGTTCTTTTAT 57.669 33.333 5.32 0.00 32.73 1.40
77 80 5.570320 ACTGTGGTTCTTTTATGTGGCTAT 58.430 37.500 0.00 0.00 0.00 2.97
106 109 1.535896 GAACACCGAGCCTTTTCTTCC 59.464 52.381 0.00 0.00 0.00 3.46
122 125 7.121907 CCTTTTCTTCCTTTTAGATGAGAAGGG 59.878 40.741 14.21 3.59 42.58 3.95
204 211 6.706295 GCTCCTGGCTAATCAGAGTAATATT 58.294 40.000 0.00 0.00 36.93 1.28
205 212 7.841956 GCTCCTGGCTAATCAGAGTAATATTA 58.158 38.462 0.00 0.00 36.93 0.98
360 1615 4.806936 TTGCTGGCAACTCTCTGG 57.193 55.556 3.72 0.00 37.61 3.86
376 1631 7.304497 ACTCTCTGGTTGGGTGATATATTAC 57.696 40.000 0.00 0.00 0.00 1.89
388 1643 5.280521 GGTGATATATTACTTCCACCCTGGG 60.281 48.000 12.28 12.28 38.32 4.45
413 1668 7.254829 GGGAGAGAAGACAAAACTTAGTTTCAC 60.255 40.741 10.98 5.92 34.43 3.18
451 1706 4.451629 CTGGCAAGCATGAAAGAATCTT 57.548 40.909 0.00 0.00 0.00 2.40
452 1707 5.571784 CTGGCAAGCATGAAAGAATCTTA 57.428 39.130 0.00 0.00 0.00 2.10
460 1715 7.934855 AGCATGAAAGAATCTTAACTGTCAT 57.065 32.000 0.00 0.00 40.42 3.06
474 1729 5.424121 AACTGTCATTGTAAGTTGCAGAC 57.576 39.130 6.45 6.45 33.01 3.51
491 1746 4.458989 TGCAGACATGGAAATGGTAAGAAC 59.541 41.667 0.00 0.00 0.00 3.01
534 1789 2.178890 GCTCTCCTGATTGCCGCTG 61.179 63.158 0.00 0.00 0.00 5.18
539 1794 1.069823 CTCCTGATTGCCGCTGTATCT 59.930 52.381 0.00 0.00 0.00 1.98
540 1795 1.486310 TCCTGATTGCCGCTGTATCTT 59.514 47.619 0.00 0.00 0.00 2.40
589 1844 4.097892 TCAGTATATCGCTGTCAGCAGAAA 59.902 41.667 24.13 7.08 45.28 2.52
614 1869 1.152881 GGACCCCACCATCATCAGC 60.153 63.158 0.00 0.00 0.00 4.26
616 1871 0.749454 GACCCCACCATCATCAGCAC 60.749 60.000 0.00 0.00 0.00 4.40
620 1875 1.315690 CCACCATCATCAGCACATCC 58.684 55.000 0.00 0.00 0.00 3.51
646 1901 6.774656 AGACCAAGAAATGTTGAAGAATGACT 59.225 34.615 0.00 0.00 0.00 3.41
664 1919 9.778741 AGAATGACTTGTATGAAAAGTTAGTGA 57.221 29.630 0.00 0.00 37.98 3.41
785 2049 3.166953 TTGCACACAACGCGCTGAG 62.167 57.895 17.68 11.23 0.00 3.35
819 2083 0.581529 CCATGGCGTACAAGTATGCG 59.418 55.000 15.85 5.02 46.23 4.73
974 2248 2.375146 TCGCTGGCTTAGACTCATACA 58.625 47.619 0.00 0.00 0.00 2.29
1140 2414 2.229543 TGGCGTCTCGTACAACTACAAT 59.770 45.455 0.00 0.00 0.00 2.71
1266 2540 2.353208 CCTGGTCTTCGTCTCTGAAAGG 60.353 54.545 0.00 0.00 0.00 3.11
1593 2867 8.830580 TCTTATCTTCCTTTTGCTATTTGATCG 58.169 33.333 0.00 0.00 0.00 3.69
1594 2868 8.731275 TTATCTTCCTTTTGCTATTTGATCGA 57.269 30.769 0.00 0.00 0.00 3.59
1595 2869 7.814264 ATCTTCCTTTTGCTATTTGATCGAT 57.186 32.000 0.00 0.00 0.00 3.59
1616 2890 8.332996 TCGATCTACTACTTTGTACTTGTCTT 57.667 34.615 0.00 0.00 0.00 3.01
1707 2995 5.410067 TGCATGGCTAAATTTCTGCTTAAC 58.590 37.500 13.43 5.16 0.00 2.01
1957 3245 6.237313 AGCGAAACAGTACTATTTTTCCAC 57.763 37.500 0.00 3.02 0.00 4.02
1958 3246 5.180680 AGCGAAACAGTACTATTTTTCCACC 59.819 40.000 0.00 0.15 0.00 4.61
2284 3572 1.334960 CGTTGCAAAAGCGACCATCTT 60.335 47.619 0.00 0.00 0.00 2.40
2332 3620 3.554324 CCTATGCACAATGATTTGCTTGC 59.446 43.478 11.53 3.47 39.62 4.01
2340 3628 4.380233 ACAATGATTTGCTTGCTCAGTAGC 60.380 41.667 0.00 0.00 41.82 3.58
2359 3647 1.594518 GCACACACTTGCACAGTTACG 60.595 52.381 0.00 0.00 42.49 3.18
2385 3674 9.551734 GTTACATTAATTATACTTCCCCGTTCT 57.448 33.333 0.00 0.00 0.00 3.01
2620 3924 5.854010 TCTGGAATGGAGTATGTAGTGAC 57.146 43.478 0.00 0.00 0.00 3.67
2623 3927 4.464951 TGGAATGGAGTATGTAGTGACGTT 59.535 41.667 0.00 0.00 0.00 3.99
2853 4157 4.863491 TGTCTTCGAAGTAAGTACACCAC 58.137 43.478 23.85 11.45 0.00 4.16
2915 4219 2.866762 GACTGTTTATGACTGGCCGATC 59.133 50.000 0.00 0.00 0.00 3.69
2946 4250 5.186198 ACTATGGGTGCTCTGTTTGTATTC 58.814 41.667 0.00 0.00 0.00 1.75
3051 4358 0.882927 TGGGACCGTCTTTCAAAGCG 60.883 55.000 6.91 6.91 0.00 4.68
3092 4399 0.318784 GCCATCCCTCACGTATCGAC 60.319 60.000 0.00 0.00 0.00 4.20
3172 4479 3.684788 CACCAATTCAGACGGTAAGGAAG 59.315 47.826 0.00 0.00 0.00 3.46
3450 4761 4.646572 GGATAACAGAGGGTGATTGGATC 58.353 47.826 0.00 0.00 0.00 3.36
3558 4875 2.348472 CATGGTATGGACCCAGGGTAT 58.652 52.381 12.69 4.92 46.32 2.73
3584 4902 7.489982 TTGCTGTTTACCTGATGAACGCAAG 62.490 44.000 5.36 0.00 39.22 4.01
3627 4945 2.202570 CGGAGCGGGTACGACTTG 60.203 66.667 5.78 0.00 44.60 3.16
3732 5056 1.083806 CAATGTCGCTGCCGCTCTTA 61.084 55.000 0.00 0.00 0.00 2.10
3933 5257 1.390926 GGAGGAGGAGTACACCCCA 59.609 63.158 15.61 0.00 0.00 4.96
3999 5323 2.520260 GGCCAGATGTGCATCCCC 60.520 66.667 0.00 4.05 38.58 4.81
4031 5355 2.309528 TGATCTTTCGCCGCTATGTT 57.690 45.000 0.00 0.00 0.00 2.71
4040 5364 1.103398 GCCGCTATGTTGGAATGGCT 61.103 55.000 0.00 0.00 38.00 4.75
4046 5370 3.243636 GCTATGTTGGAATGGCTGGATTG 60.244 47.826 0.00 0.00 31.77 2.67
4060 5398 1.648467 GGATTGACGCTTGGGCTCAC 61.648 60.000 0.00 0.00 36.09 3.51
4062 5400 0.322816 ATTGACGCTTGGGCTCACAT 60.323 50.000 0.00 0.00 36.09 3.21
4075 5413 1.133790 GCTCACATTGTTGCCTGGATC 59.866 52.381 0.00 0.00 0.00 3.36
4076 5414 1.399440 CTCACATTGTTGCCTGGATCG 59.601 52.381 0.00 0.00 0.00 3.69
4097 5435 6.741992 TCGATTGCTTGAGATGTATTTGTT 57.258 33.333 0.00 0.00 0.00 2.83
4117 5455 5.229423 TGTTATTTCTGTTTGGATTGCTGC 58.771 37.500 0.00 0.00 0.00 5.25
4120 5458 1.999648 TCTGTTTGGATTGCTGCCTT 58.000 45.000 0.00 0.00 0.00 4.35
4121 5459 1.614903 TCTGTTTGGATTGCTGCCTTG 59.385 47.619 0.00 0.00 0.00 3.61
4123 5461 1.340889 TGTTTGGATTGCTGCCTTGTC 59.659 47.619 0.00 0.00 0.00 3.18
4124 5462 1.615392 GTTTGGATTGCTGCCTTGTCT 59.385 47.619 0.00 0.00 0.00 3.41
4127 5465 1.318158 GGATTGCTGCCTTGTCTGGG 61.318 60.000 0.00 0.00 0.00 4.45
4129 5467 0.178953 ATTGCTGCCTTGTCTGGGTT 60.179 50.000 0.00 0.00 0.00 4.11
4131 5469 2.924105 GCTGCCTTGTCTGGGTTGC 61.924 63.158 0.00 0.00 0.00 4.17
4132 5470 1.228367 CTGCCTTGTCTGGGTTGCT 60.228 57.895 0.00 0.00 0.00 3.91
4133 5471 0.036732 CTGCCTTGTCTGGGTTGCTA 59.963 55.000 0.00 0.00 0.00 3.49
4135 5473 1.340017 TGCCTTGTCTGGGTTGCTATC 60.340 52.381 0.00 0.00 0.00 2.08
4136 5474 1.656652 CCTTGTCTGGGTTGCTATCG 58.343 55.000 0.00 0.00 0.00 2.92
4137 5475 1.207089 CCTTGTCTGGGTTGCTATCGA 59.793 52.381 0.00 0.00 0.00 3.59
4138 5476 2.271800 CTTGTCTGGGTTGCTATCGAC 58.728 52.381 0.00 0.00 0.00 4.20
4139 5477 0.535335 TGTCTGGGTTGCTATCGACC 59.465 55.000 0.00 0.00 44.57 4.79
4145 5483 2.109425 GGTTGCTATCGACCCTTTGT 57.891 50.000 0.00 0.00 40.30 2.83
4146 5484 3.255969 GGTTGCTATCGACCCTTTGTA 57.744 47.619 0.00 0.00 40.30 2.41
4147 5485 3.805207 GGTTGCTATCGACCCTTTGTAT 58.195 45.455 0.00 0.00 40.30 2.29
4148 5486 4.196971 GGTTGCTATCGACCCTTTGTATT 58.803 43.478 0.00 0.00 40.30 1.89
4149 5487 4.272748 GGTTGCTATCGACCCTTTGTATTC 59.727 45.833 0.00 0.00 40.30 1.75
4150 5488 4.067972 TGCTATCGACCCTTTGTATTCC 57.932 45.455 0.00 0.00 0.00 3.01
4153 5491 3.992943 ATCGACCCTTTGTATTCCACA 57.007 42.857 0.00 0.00 34.51 4.17
4154 5492 3.048337 TCGACCCTTTGTATTCCACAC 57.952 47.619 0.00 0.00 36.69 3.82
4155 5493 2.369203 TCGACCCTTTGTATTCCACACA 59.631 45.455 0.00 0.00 36.69 3.72
4158 5496 4.217550 CGACCCTTTGTATTCCACACATTT 59.782 41.667 0.00 0.00 36.69 2.32
4161 5499 5.779771 ACCCTTTGTATTCCACACATTTCAT 59.220 36.000 0.00 0.00 36.69 2.57
4162 5500 6.071391 ACCCTTTGTATTCCACACATTTCATC 60.071 38.462 0.00 0.00 36.69 2.92
4163 5501 6.153340 CCCTTTGTATTCCACACATTTCATCT 59.847 38.462 0.00 0.00 36.69 2.90
4164 5502 7.309990 CCCTTTGTATTCCACACATTTCATCTT 60.310 37.037 0.00 0.00 36.69 2.40
4168 5506 7.601856 TGTATTCCACACATTTCATCTTTTCC 58.398 34.615 0.00 0.00 30.04 3.13
4192 5530 6.968904 CCACACATTTCATCTTGCTGTAATAC 59.031 38.462 0.00 0.00 0.00 1.89
4193 5531 6.684131 CACACATTTCATCTTGCTGTAATACG 59.316 38.462 0.00 0.00 0.00 3.06
4195 5533 7.547722 ACACATTTCATCTTGCTGTAATACGTA 59.452 33.333 0.00 0.00 0.00 3.57
4196 5534 7.846107 CACATTTCATCTTGCTGTAATACGTAC 59.154 37.037 0.00 0.00 0.00 3.67
4249 5587 3.084786 ACTGAATAGTCCCTGCTTTTGC 58.915 45.455 0.00 0.00 38.24 3.68
4269 5607 7.897575 TTTGCTGTCACAAGTTTTGTTAAAT 57.102 28.000 0.00 0.00 43.23 1.40
4277 5615 9.701355 GTCACAAGTTTTGTTAAATTTTCATGG 57.299 29.630 0.00 0.00 43.23 3.66
4302 5640 8.810427 GGCACAAGTACAATTCATTCATTATTG 58.190 33.333 0.00 0.00 35.82 1.90
4340 5678 9.326413 ACAACGATCTATTTTACATAGAAAGGG 57.674 33.333 0.00 0.00 34.67 3.95
4341 5679 9.542462 CAACGATCTATTTTACATAGAAAGGGA 57.458 33.333 0.00 0.00 34.67 4.20
4351 5721 7.859325 TTACATAGAAAGGGATAAGTTGCAC 57.141 36.000 0.00 0.00 0.00 4.57
4366 5736 3.259876 AGTTGCACCATTCAAATGCTCAT 59.740 39.130 0.00 0.00 40.13 2.90
4376 5746 6.310467 CCATTCAAATGCTCATCAACTTGAAG 59.690 38.462 10.99 0.00 40.64 3.02
4382 5782 3.999001 TGCTCATCAACTTGAAGTAGCTG 59.001 43.478 15.55 4.26 33.43 4.24
4391 5791 1.938585 TGAAGTAGCTGGCACCTAGT 58.061 50.000 0.00 0.00 0.00 2.57
4396 5796 0.981277 TAGCTGGCACCTAGTTCCCC 60.981 60.000 0.00 0.00 0.00 4.81
4397 5797 2.301738 GCTGGCACCTAGTTCCCCT 61.302 63.158 0.00 0.00 0.00 4.79
4400 5800 1.205460 TGGCACCTAGTTCCCCTTCC 61.205 60.000 0.00 0.00 0.00 3.46
4402 5802 1.624391 GGCACCTAGTTCCCCTTCCTA 60.624 57.143 0.00 0.00 0.00 2.94
4413 5813 2.787035 TCCCCTTCCTACCAACAAAGTT 59.213 45.455 0.00 0.00 0.00 2.66
4414 5814 2.890945 CCCCTTCCTACCAACAAAGTTG 59.109 50.000 3.00 3.00 0.00 3.16
4423 5823 1.334419 CCAACAAAGTTGCTGCTCTCG 60.334 52.381 0.00 0.00 0.00 4.04
4449 5849 2.414481 CGAGATCCAACAACTTCAGCAG 59.586 50.000 0.00 0.00 0.00 4.24
4454 5854 1.268896 CCAACAACTTCAGCAGCACAG 60.269 52.381 0.00 0.00 0.00 3.66
4486 5886 2.224992 TGGGATGAAGCTGCCAACTTTA 60.225 45.455 0.00 0.00 33.17 1.85
4490 5890 4.884164 GGATGAAGCTGCCAACTTTATACT 59.116 41.667 0.00 0.00 0.00 2.12
4491 5891 6.055588 GGATGAAGCTGCCAACTTTATACTA 58.944 40.000 0.00 0.00 0.00 1.82
4492 5892 6.203723 GGATGAAGCTGCCAACTTTATACTAG 59.796 42.308 0.00 0.00 0.00 2.57
4493 5893 4.876107 TGAAGCTGCCAACTTTATACTAGC 59.124 41.667 0.00 0.00 0.00 3.42
4494 5894 4.487714 AGCTGCCAACTTTATACTAGCA 57.512 40.909 0.00 0.00 32.64 3.49
4495 5895 4.192317 AGCTGCCAACTTTATACTAGCAC 58.808 43.478 0.00 0.00 32.64 4.40
4496 5896 3.938963 GCTGCCAACTTTATACTAGCACA 59.061 43.478 0.00 0.00 0.00 4.57
4497 5897 4.034510 GCTGCCAACTTTATACTAGCACAG 59.965 45.833 0.00 0.00 0.00 3.66
4498 5898 5.160607 TGCCAACTTTATACTAGCACAGT 57.839 39.130 0.00 0.00 41.62 3.55
4499 5899 4.935205 TGCCAACTTTATACTAGCACAGTG 59.065 41.667 0.00 0.00 38.24 3.66
4500 5900 4.332819 GCCAACTTTATACTAGCACAGTGG 59.667 45.833 1.84 0.00 38.24 4.00
4501 5901 4.332819 CCAACTTTATACTAGCACAGTGGC 59.667 45.833 1.84 0.00 38.24 5.01
4502 5902 4.138487 ACTTTATACTAGCACAGTGGCC 57.862 45.455 1.84 0.00 38.24 5.36
4503 5903 2.882927 TTATACTAGCACAGTGGCCG 57.117 50.000 1.84 0.00 38.24 6.13
4504 5904 1.771565 TATACTAGCACAGTGGCCGT 58.228 50.000 1.84 0.00 38.24 5.68
4505 5905 0.460311 ATACTAGCACAGTGGCCGTC 59.540 55.000 1.84 0.00 38.24 4.79
4506 5906 0.611062 TACTAGCACAGTGGCCGTCT 60.611 55.000 1.84 0.00 38.24 4.18
4507 5907 1.446792 CTAGCACAGTGGCCGTCTG 60.447 63.158 21.22 21.22 38.68 3.51
4508 5908 1.877576 CTAGCACAGTGGCCGTCTGA 61.878 60.000 27.09 9.71 36.81 3.27
4509 5909 1.468506 TAGCACAGTGGCCGTCTGAA 61.469 55.000 27.09 11.55 36.81 3.02
4510 5910 1.891919 GCACAGTGGCCGTCTGAAA 60.892 57.895 27.09 0.00 36.81 2.69
4511 5911 1.237285 GCACAGTGGCCGTCTGAAAT 61.237 55.000 27.09 8.60 36.81 2.17
4512 5912 0.518636 CACAGTGGCCGTCTGAAATG 59.481 55.000 27.09 15.18 36.81 2.32
4513 5913 1.237285 ACAGTGGCCGTCTGAAATGC 61.237 55.000 27.09 0.00 36.81 3.56
4514 5914 2.034879 AGTGGCCGTCTGAAATGCG 61.035 57.895 0.00 0.00 0.00 4.73
4515 5915 2.032634 GTGGCCGTCTGAAATGCGA 61.033 57.895 0.00 0.00 0.00 5.10
4516 5916 1.741401 TGGCCGTCTGAAATGCGAG 60.741 57.895 0.00 0.00 0.00 5.03
4517 5917 2.464459 GGCCGTCTGAAATGCGAGG 61.464 63.158 0.00 0.00 0.00 4.63
4518 5918 2.464459 GCCGTCTGAAATGCGAGGG 61.464 63.158 0.00 0.00 38.03 4.30
4519 5919 2.464459 CCGTCTGAAATGCGAGGGC 61.464 63.158 0.00 0.00 40.52 5.19
4528 5928 4.819783 TGCGAGGGCATCACTTTT 57.180 50.000 0.00 0.00 46.21 2.27
4529 5929 2.555123 TGCGAGGGCATCACTTTTC 58.445 52.632 0.00 0.00 46.21 2.29
4530 5930 0.250684 TGCGAGGGCATCACTTTTCA 60.251 50.000 0.00 0.00 46.21 2.69
4531 5931 1.098050 GCGAGGGCATCACTTTTCAT 58.902 50.000 0.00 0.00 39.62 2.57
4532 5932 2.288666 GCGAGGGCATCACTTTTCATA 58.711 47.619 0.00 0.00 39.62 2.15
4533 5933 2.032178 GCGAGGGCATCACTTTTCATAC 59.968 50.000 0.00 0.00 39.62 2.39
4534 5934 3.270027 CGAGGGCATCACTTTTCATACA 58.730 45.455 0.00 0.00 0.00 2.29
4535 5935 3.879295 CGAGGGCATCACTTTTCATACAT 59.121 43.478 0.00 0.00 0.00 2.29
4536 5936 4.336433 CGAGGGCATCACTTTTCATACATT 59.664 41.667 0.00 0.00 0.00 2.71
4537 5937 5.585390 GAGGGCATCACTTTTCATACATTG 58.415 41.667 0.00 0.00 0.00 2.82
4538 5938 4.403432 AGGGCATCACTTTTCATACATTGG 59.597 41.667 0.00 0.00 0.00 3.16
4539 5939 4.402155 GGGCATCACTTTTCATACATTGGA 59.598 41.667 0.00 0.00 0.00 3.53
4540 5940 5.105392 GGGCATCACTTTTCATACATTGGAA 60.105 40.000 0.00 0.00 0.00 3.53
4541 5941 6.407299 GGGCATCACTTTTCATACATTGGAAT 60.407 38.462 0.00 0.00 0.00 3.01
4542 5942 7.201902 GGGCATCACTTTTCATACATTGGAATA 60.202 37.037 0.00 0.00 0.00 1.75
4543 5943 8.196771 GGCATCACTTTTCATACATTGGAATAA 58.803 33.333 0.00 0.00 0.00 1.40
4544 5944 9.754382 GCATCACTTTTCATACATTGGAATAAT 57.246 29.630 0.00 0.00 0.00 1.28
4576 5976 9.603921 AAAATATTTCTGAGGTTTTATGCATGG 57.396 29.630 10.16 0.00 0.00 3.66
4577 5977 8.537728 AATATTTCTGAGGTTTTATGCATGGA 57.462 30.769 10.16 0.00 0.00 3.41
4578 5978 8.716674 ATATTTCTGAGGTTTTATGCATGGAT 57.283 30.769 10.16 4.68 0.00 3.41
4579 5979 9.812347 ATATTTCTGAGGTTTTATGCATGGATA 57.188 29.630 10.16 2.31 0.00 2.59
4580 5980 8.716674 ATTTCTGAGGTTTTATGCATGGATAT 57.283 30.769 10.16 0.00 0.00 1.63
4581 5981 9.812347 ATTTCTGAGGTTTTATGCATGGATATA 57.188 29.630 10.16 0.28 0.00 0.86
4582 5982 9.812347 TTTCTGAGGTTTTATGCATGGATATAT 57.188 29.630 10.16 0.00 0.00 0.86
4583 5983 9.812347 TTCTGAGGTTTTATGCATGGATATATT 57.188 29.630 10.16 0.00 0.00 1.28
4610 6010 8.815565 TGTAAACTGAAATATTTAGGCCATGA 57.184 30.769 5.01 0.00 0.00 3.07
4611 6011 9.420118 TGTAAACTGAAATATTTAGGCCATGAT 57.580 29.630 5.01 0.00 0.00 2.45
4623 6023 7.849322 TTTAGGCCATGATATAGTCACTACA 57.151 36.000 5.01 0.00 40.28 2.74
4624 6024 7.849322 TTAGGCCATGATATAGTCACTACAA 57.151 36.000 5.01 0.00 40.28 2.41
4625 6025 6.942163 AGGCCATGATATAGTCACTACAAT 57.058 37.500 5.01 0.00 40.28 2.71
4626 6026 7.321717 AGGCCATGATATAGTCACTACAATT 57.678 36.000 5.01 0.00 40.28 2.32
4627 6027 7.749666 AGGCCATGATATAGTCACTACAATTT 58.250 34.615 5.01 0.00 40.28 1.82
4628 6028 8.220559 AGGCCATGATATAGTCACTACAATTTT 58.779 33.333 5.01 0.00 40.28 1.82
4629 6029 8.850156 GGCCATGATATAGTCACTACAATTTTT 58.150 33.333 0.00 0.00 40.28 1.94
4650 6050 3.684103 TTGCTAAAAGAACGTGTGTGG 57.316 42.857 0.00 0.00 0.00 4.17
4651 6051 2.907634 TGCTAAAAGAACGTGTGTGGA 58.092 42.857 0.00 0.00 0.00 4.02
4652 6052 3.472652 TGCTAAAAGAACGTGTGTGGAT 58.527 40.909 0.00 0.00 0.00 3.41
4653 6053 3.880490 TGCTAAAAGAACGTGTGTGGATT 59.120 39.130 0.00 0.00 0.00 3.01
4654 6054 5.057819 TGCTAAAAGAACGTGTGTGGATTA 58.942 37.500 0.00 0.00 0.00 1.75
4655 6055 5.049954 TGCTAAAAGAACGTGTGTGGATTAC 60.050 40.000 0.00 0.00 0.00 1.89
4656 6056 5.178809 GCTAAAAGAACGTGTGTGGATTACT 59.821 40.000 0.00 0.00 0.00 2.24
4657 6057 6.293244 GCTAAAAGAACGTGTGTGGATTACTT 60.293 38.462 0.00 0.00 0.00 2.24
4658 6058 5.668558 AAAGAACGTGTGTGGATTACTTC 57.331 39.130 0.00 0.00 0.00 3.01
4659 6059 4.602340 AGAACGTGTGTGGATTACTTCT 57.398 40.909 0.00 0.00 0.00 2.85
4660 6060 4.957296 AGAACGTGTGTGGATTACTTCTT 58.043 39.130 0.00 0.00 0.00 2.52
4661 6061 5.365619 AGAACGTGTGTGGATTACTTCTTT 58.634 37.500 0.00 0.00 0.00 2.52
4662 6062 6.518493 AGAACGTGTGTGGATTACTTCTTTA 58.482 36.000 0.00 0.00 0.00 1.85
4663 6063 6.987992 AGAACGTGTGTGGATTACTTCTTTAA 59.012 34.615 0.00 0.00 0.00 1.52
4664 6064 7.660208 AGAACGTGTGTGGATTACTTCTTTAAT 59.340 33.333 0.00 0.00 0.00 1.40
4665 6065 7.739498 ACGTGTGTGGATTACTTCTTTAATT 57.261 32.000 0.00 0.00 0.00 1.40
4666 6066 8.836268 ACGTGTGTGGATTACTTCTTTAATTA 57.164 30.769 0.00 0.00 0.00 1.40
4667 6067 9.444600 ACGTGTGTGGATTACTTCTTTAATTAT 57.555 29.630 0.00 0.00 0.00 1.28
4711 6111 9.747898 TGATTACTATACCAATTCCAAAACACT 57.252 29.630 0.00 0.00 0.00 3.55
4726 6126 9.521841 TTCCAAAACACTATATTAACATCCACA 57.478 29.630 0.00 0.00 0.00 4.17
4727 6127 9.693739 TCCAAAACACTATATTAACATCCACAT 57.306 29.630 0.00 0.00 0.00 3.21
4728 6128 9.734620 CCAAAACACTATATTAACATCCACATG 57.265 33.333 0.00 0.00 35.92 3.21
4731 6131 7.969536 ACACTATATTAACATCCACATGAGC 57.030 36.000 0.00 0.00 33.72 4.26
4732 6132 6.936900 ACACTATATTAACATCCACATGAGCC 59.063 38.462 0.00 0.00 33.72 4.70
4733 6133 6.091305 CACTATATTAACATCCACATGAGCCG 59.909 42.308 0.00 0.00 33.72 5.52
4734 6134 3.558931 ATTAACATCCACATGAGCCGA 57.441 42.857 0.00 0.00 33.72 5.54
4735 6135 3.558931 TTAACATCCACATGAGCCGAT 57.441 42.857 0.00 0.00 33.72 4.18
4736 6136 2.425143 AACATCCACATGAGCCGATT 57.575 45.000 0.00 0.00 33.72 3.34
4737 6137 2.425143 ACATCCACATGAGCCGATTT 57.575 45.000 0.00 0.00 33.72 2.17
4738 6138 2.726821 ACATCCACATGAGCCGATTTT 58.273 42.857 0.00 0.00 33.72 1.82
4739 6139 3.884895 ACATCCACATGAGCCGATTTTA 58.115 40.909 0.00 0.00 33.72 1.52
4740 6140 4.464008 ACATCCACATGAGCCGATTTTAT 58.536 39.130 0.00 0.00 33.72 1.40
4741 6141 4.276678 ACATCCACATGAGCCGATTTTATG 59.723 41.667 0.00 0.00 33.72 1.90
4742 6142 3.884895 TCCACATGAGCCGATTTTATGT 58.115 40.909 0.00 0.00 32.60 2.29
4743 6143 5.029807 TCCACATGAGCCGATTTTATGTA 57.970 39.130 0.00 0.00 31.34 2.29
4744 6144 5.056480 TCCACATGAGCCGATTTTATGTAG 58.944 41.667 0.00 0.00 31.34 2.74
4745 6145 4.816385 CCACATGAGCCGATTTTATGTAGT 59.184 41.667 0.00 0.00 31.34 2.73
4746 6146 5.296780 CCACATGAGCCGATTTTATGTAGTT 59.703 40.000 0.00 0.00 31.34 2.24
4747 6147 6.183360 CCACATGAGCCGATTTTATGTAGTTT 60.183 38.462 0.00 0.00 31.34 2.66
4748 6148 7.250569 CACATGAGCCGATTTTATGTAGTTTT 58.749 34.615 0.00 0.00 31.34 2.43
4749 6149 7.218773 CACATGAGCCGATTTTATGTAGTTTTG 59.781 37.037 0.00 0.00 31.34 2.44
4750 6150 6.189677 TGAGCCGATTTTATGTAGTTTTGG 57.810 37.500 0.00 0.00 0.00 3.28
4751 6151 5.708230 TGAGCCGATTTTATGTAGTTTTGGT 59.292 36.000 0.00 0.00 0.00 3.67
4752 6152 6.879993 TGAGCCGATTTTATGTAGTTTTGGTA 59.120 34.615 0.00 0.00 0.00 3.25
4753 6153 7.065324 TGAGCCGATTTTATGTAGTTTTGGTAG 59.935 37.037 0.00 0.00 0.00 3.18
4754 6154 7.107542 AGCCGATTTTATGTAGTTTTGGTAGA 58.892 34.615 0.00 0.00 0.00 2.59
4755 6155 7.773690 AGCCGATTTTATGTAGTTTTGGTAGAT 59.226 33.333 0.00 0.00 0.00 1.98
4756 6156 9.048446 GCCGATTTTATGTAGTTTTGGTAGATA 57.952 33.333 0.00 0.00 0.00 1.98
4798 6198 9.122779 ACTATAGATATAACAATCTAGGTCGGC 57.877 37.037 6.78 0.00 40.79 5.54
4799 6199 7.956328 ATAGATATAACAATCTAGGTCGGCA 57.044 36.000 0.00 0.00 40.79 5.69
4800 6200 6.859112 AGATATAACAATCTAGGTCGGCAT 57.141 37.500 0.00 0.00 34.40 4.40
4801 6201 7.246171 AGATATAACAATCTAGGTCGGCATT 57.754 36.000 0.00 0.00 34.40 3.56
4802 6202 7.099764 AGATATAACAATCTAGGTCGGCATTG 58.900 38.462 0.00 0.00 34.40 2.82
4803 6203 2.332063 ACAATCTAGGTCGGCATTGG 57.668 50.000 3.29 0.00 31.62 3.16
4804 6204 0.947244 CAATCTAGGTCGGCATTGGC 59.053 55.000 0.00 0.00 40.13 4.52
4820 6220 5.846203 GCATTGGCCATATGACATTTAAGT 58.154 37.500 23.75 0.00 0.00 2.24
4821 6221 5.693104 GCATTGGCCATATGACATTTAAGTG 59.307 40.000 23.75 0.00 0.00 3.16
4822 6222 6.683610 GCATTGGCCATATGACATTTAAGTGT 60.684 38.462 23.75 2.87 34.39 3.55
4823 6223 7.469870 GCATTGGCCATATGACATTTAAGTGTA 60.470 37.037 23.75 0.00 31.16 2.90
4824 6224 7.566760 TTGGCCATATGACATTTAAGTGTAG 57.433 36.000 6.09 0.00 31.16 2.74
4825 6225 6.658849 TGGCCATATGACATTTAAGTGTAGT 58.341 36.000 0.00 0.00 31.16 2.73
4826 6226 6.765989 TGGCCATATGACATTTAAGTGTAGTC 59.234 38.462 0.00 0.00 31.16 2.59
4827 6227 6.992715 GGCCATATGACATTTAAGTGTAGTCT 59.007 38.462 3.65 0.00 31.16 3.24
4828 6228 7.041780 GGCCATATGACATTTAAGTGTAGTCTG 60.042 40.741 3.65 0.96 31.16 3.51
4829 6229 7.041780 GCCATATGACATTTAAGTGTAGTCTGG 60.042 40.741 3.65 9.84 31.16 3.86
4830 6230 8.204160 CCATATGACATTTAAGTGTAGTCTGGA 58.796 37.037 3.65 0.00 31.16 3.86
4831 6231 9.599866 CATATGACATTTAAGTGTAGTCTGGAA 57.400 33.333 3.29 0.00 31.16 3.53
4832 6232 9.823647 ATATGACATTTAAGTGTAGTCTGGAAG 57.176 33.333 3.29 0.00 31.16 3.46
4833 6233 7.297936 TGACATTTAAGTGTAGTCTGGAAGA 57.702 36.000 3.29 0.00 34.16 2.87
4846 6246 4.705110 TCTGGAAGACCAATGAGTTGAA 57.295 40.909 0.00 0.00 46.32 2.69
4847 6247 5.246981 TCTGGAAGACCAATGAGTTGAAT 57.753 39.130 0.00 0.00 46.32 2.57
4848 6248 5.248640 TCTGGAAGACCAATGAGTTGAATC 58.751 41.667 0.00 0.00 46.32 2.52
4849 6249 4.984295 TGGAAGACCAATGAGTTGAATCA 58.016 39.130 0.00 0.00 43.91 2.57
4850 6250 4.761739 TGGAAGACCAATGAGTTGAATCAC 59.238 41.667 0.00 0.00 43.91 3.06
4851 6251 4.156739 GGAAGACCAATGAGTTGAATCACC 59.843 45.833 0.00 0.00 37.53 4.02
4852 6252 4.371624 AGACCAATGAGTTGAATCACCA 57.628 40.909 0.00 0.00 37.53 4.17
4853 6253 4.728772 AGACCAATGAGTTGAATCACCAA 58.271 39.130 0.00 0.00 37.53 3.67
4854 6254 4.763793 AGACCAATGAGTTGAATCACCAAG 59.236 41.667 0.00 0.00 37.53 3.61
4855 6255 4.473444 ACCAATGAGTTGAATCACCAAGT 58.527 39.130 0.00 0.00 37.53 3.16
4856 6256 4.279169 ACCAATGAGTTGAATCACCAAGTG 59.721 41.667 0.00 0.00 37.53 3.16
4857 6257 4.232221 CAATGAGTTGAATCACCAAGTGC 58.768 43.478 0.00 0.00 37.53 4.40
4858 6258 3.213206 TGAGTTGAATCACCAAGTGCT 57.787 42.857 0.00 0.00 32.98 4.40
4859 6259 2.880268 TGAGTTGAATCACCAAGTGCTG 59.120 45.455 0.00 0.00 32.98 4.41
4860 6260 3.141398 GAGTTGAATCACCAAGTGCTGA 58.859 45.455 0.00 0.00 32.98 4.26
4861 6261 3.554934 AGTTGAATCACCAAGTGCTGAA 58.445 40.909 0.00 0.00 32.98 3.02
4862 6262 4.147321 AGTTGAATCACCAAGTGCTGAAT 58.853 39.130 0.00 0.00 32.98 2.57
4863 6263 4.022589 AGTTGAATCACCAAGTGCTGAATG 60.023 41.667 0.00 0.00 32.98 2.67
4864 6264 3.753815 TGAATCACCAAGTGCTGAATGA 58.246 40.909 0.00 0.00 32.98 2.57
4865 6265 4.338012 TGAATCACCAAGTGCTGAATGAT 58.662 39.130 0.00 0.00 34.10 2.45
4866 6266 4.157105 TGAATCACCAAGTGCTGAATGATG 59.843 41.667 0.00 0.00 33.40 3.07
4867 6267 3.144657 TCACCAAGTGCTGAATGATGT 57.855 42.857 0.00 0.00 32.98 3.06
4868 6268 3.489355 TCACCAAGTGCTGAATGATGTT 58.511 40.909 0.00 0.00 32.98 2.71
4869 6269 3.890756 TCACCAAGTGCTGAATGATGTTT 59.109 39.130 0.00 0.00 32.98 2.83
4870 6270 5.069318 TCACCAAGTGCTGAATGATGTTTA 58.931 37.500 0.00 0.00 32.98 2.01
4871 6271 5.711506 TCACCAAGTGCTGAATGATGTTTAT 59.288 36.000 0.00 0.00 32.98 1.40
4872 6272 6.032094 CACCAAGTGCTGAATGATGTTTATC 58.968 40.000 0.00 0.00 0.00 1.75
4873 6273 5.948162 ACCAAGTGCTGAATGATGTTTATCT 59.052 36.000 0.00 0.00 34.31 1.98
4874 6274 7.066163 CACCAAGTGCTGAATGATGTTTATCTA 59.934 37.037 0.00 0.00 34.31 1.98
4875 6275 7.776969 ACCAAGTGCTGAATGATGTTTATCTAT 59.223 33.333 0.00 0.00 34.31 1.98
4876 6276 9.276590 CCAAGTGCTGAATGATGTTTATCTATA 57.723 33.333 0.00 0.00 34.31 1.31
4939 6339 8.613060 AAGTATTCATATGCAATTCGATCTGT 57.387 30.769 0.00 0.00 0.00 3.41
4940 6340 8.249327 AGTATTCATATGCAATTCGATCTGTC 57.751 34.615 0.00 0.00 0.00 3.51
4941 6341 8.093307 AGTATTCATATGCAATTCGATCTGTCT 58.907 33.333 0.00 0.00 0.00 3.41
4942 6342 6.535274 TTCATATGCAATTCGATCTGTCTG 57.465 37.500 0.00 0.00 0.00 3.51
4943 6343 5.604565 TCATATGCAATTCGATCTGTCTGT 58.395 37.500 0.00 0.00 0.00 3.41
4944 6344 5.464389 TCATATGCAATTCGATCTGTCTGTG 59.536 40.000 0.00 0.00 0.00 3.66
4945 6345 2.349590 TGCAATTCGATCTGTCTGTGG 58.650 47.619 0.00 0.00 0.00 4.17
4946 6346 2.028203 TGCAATTCGATCTGTCTGTGGA 60.028 45.455 0.00 0.00 0.00 4.02
4947 6347 3.201290 GCAATTCGATCTGTCTGTGGAT 58.799 45.455 0.00 0.00 0.00 3.41
4948 6348 3.624861 GCAATTCGATCTGTCTGTGGATT 59.375 43.478 0.00 0.00 0.00 3.01
4949 6349 4.811024 GCAATTCGATCTGTCTGTGGATTA 59.189 41.667 0.00 0.00 0.00 1.75
4950 6350 5.277058 GCAATTCGATCTGTCTGTGGATTAC 60.277 44.000 0.00 0.00 0.00 1.89
4951 6351 5.860941 ATTCGATCTGTCTGTGGATTACT 57.139 39.130 0.00 0.00 0.00 2.24
4952 6352 6.961360 ATTCGATCTGTCTGTGGATTACTA 57.039 37.500 0.00 0.00 0.00 1.82
4953 6353 6.769134 TTCGATCTGTCTGTGGATTACTAA 57.231 37.500 0.00 0.00 0.00 2.24
4954 6354 6.132791 TCGATCTGTCTGTGGATTACTAAC 57.867 41.667 0.00 0.00 0.00 2.34
4955 6355 5.650703 TCGATCTGTCTGTGGATTACTAACA 59.349 40.000 0.00 0.00 0.00 2.41
4956 6356 6.152154 TCGATCTGTCTGTGGATTACTAACAA 59.848 38.462 0.00 0.00 0.00 2.83
4957 6357 6.473778 CGATCTGTCTGTGGATTACTAACAAG 59.526 42.308 0.00 0.00 0.00 3.16
4958 6358 5.479306 TCTGTCTGTGGATTACTAACAAGC 58.521 41.667 0.00 0.00 0.00 4.01
4959 6359 4.575885 TGTCTGTGGATTACTAACAAGCC 58.424 43.478 0.00 0.00 34.46 4.35
4960 6360 4.041075 TGTCTGTGGATTACTAACAAGCCA 59.959 41.667 0.00 0.00 41.53 4.75
4961 6361 5.001232 GTCTGTGGATTACTAACAAGCCAA 58.999 41.667 0.00 0.00 45.05 4.52
4962 6362 5.001232 TCTGTGGATTACTAACAAGCCAAC 58.999 41.667 0.00 0.00 45.05 3.77
4963 6363 4.720046 TGTGGATTACTAACAAGCCAACA 58.280 39.130 0.00 0.00 45.05 3.33
4964 6364 5.321102 TGTGGATTACTAACAAGCCAACAT 58.679 37.500 0.00 0.00 45.05 2.71
4965 6365 5.414454 TGTGGATTACTAACAAGCCAACATC 59.586 40.000 0.00 0.00 45.05 3.06
4966 6366 5.414454 GTGGATTACTAACAAGCCAACATCA 59.586 40.000 0.00 0.00 45.05 3.07
4967 6367 6.007076 TGGATTACTAACAAGCCAACATCAA 58.993 36.000 0.00 0.00 40.87 2.57
4968 6368 6.491745 TGGATTACTAACAAGCCAACATCAAA 59.508 34.615 0.00 0.00 40.87 2.69
4969 6369 7.178274 TGGATTACTAACAAGCCAACATCAAAT 59.822 33.333 0.00 0.00 40.87 2.32
4970 6370 7.702348 GGATTACTAACAAGCCAACATCAAATC 59.298 37.037 0.00 0.00 34.03 2.17
4971 6371 7.759489 TTACTAACAAGCCAACATCAAATCT 57.241 32.000 0.00 0.00 0.00 2.40
4972 6372 6.259550 ACTAACAAGCCAACATCAAATCTC 57.740 37.500 0.00 0.00 0.00 2.75
4973 6373 3.837213 ACAAGCCAACATCAAATCTCG 57.163 42.857 0.00 0.00 0.00 4.04
4974 6374 3.149196 ACAAGCCAACATCAAATCTCGT 58.851 40.909 0.00 0.00 0.00 4.18
4975 6375 3.058016 ACAAGCCAACATCAAATCTCGTG 60.058 43.478 0.00 0.00 0.00 4.35
4976 6376 2.086869 AGCCAACATCAAATCTCGTGG 58.913 47.619 0.00 0.00 0.00 4.94
4977 6377 1.812571 GCCAACATCAAATCTCGTGGT 59.187 47.619 0.00 0.00 0.00 4.16
4978 6378 2.228822 GCCAACATCAAATCTCGTGGTT 59.771 45.455 0.00 0.00 0.00 3.67
4979 6379 3.305335 GCCAACATCAAATCTCGTGGTTT 60.305 43.478 0.00 0.00 0.00 3.27
4980 6380 4.475944 CCAACATCAAATCTCGTGGTTTC 58.524 43.478 0.00 0.00 0.00 2.78
4981 6381 4.216257 CCAACATCAAATCTCGTGGTTTCT 59.784 41.667 0.00 0.00 0.00 2.52
4982 6382 5.278463 CCAACATCAAATCTCGTGGTTTCTT 60.278 40.000 0.00 0.00 0.00 2.52
4983 6383 6.208644 CAACATCAAATCTCGTGGTTTCTTT 58.791 36.000 0.00 0.00 0.00 2.52
4984 6384 6.391227 ACATCAAATCTCGTGGTTTCTTTT 57.609 33.333 0.00 0.00 0.00 2.27
4985 6385 6.805713 ACATCAAATCTCGTGGTTTCTTTTT 58.194 32.000 0.00 0.00 0.00 1.94
5005 6405 5.341872 TTTTACCATCGATTTCCTACGGA 57.658 39.130 0.00 0.00 0.00 4.69
5006 6406 5.540400 TTTACCATCGATTTCCTACGGAT 57.460 39.130 0.00 0.00 0.00 4.18
5007 6407 5.540400 TTACCATCGATTTCCTACGGATT 57.460 39.130 0.00 0.00 0.00 3.01
5008 6408 3.991367 ACCATCGATTTCCTACGGATTC 58.009 45.455 0.00 0.00 0.00 2.52
5009 6409 3.386726 ACCATCGATTTCCTACGGATTCA 59.613 43.478 0.00 0.00 0.00 2.57
5010 6410 4.040461 ACCATCGATTTCCTACGGATTCAT 59.960 41.667 0.00 0.00 0.00 2.57
5011 6411 5.245301 ACCATCGATTTCCTACGGATTCATA 59.755 40.000 0.00 0.00 0.00 2.15
5012 6412 6.070767 ACCATCGATTTCCTACGGATTCATAT 60.071 38.462 0.00 0.00 0.00 1.78
5013 6413 6.256539 CCATCGATTTCCTACGGATTCATATG 59.743 42.308 0.00 0.00 0.00 1.78
5014 6414 5.168569 TCGATTTCCTACGGATTCATATGC 58.831 41.667 0.00 0.00 0.00 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 49 8.950210 CACATAAAAGAACCACAGTTGATATCT 58.050 33.333 3.98 0.00 35.94 1.98
62 65 8.815565 TCCATGTTTTATAGCCACATAAAAGA 57.184 30.769 8.11 7.84 39.70 2.52
69 72 4.461081 GGTGTTCCATGTTTTATAGCCACA 59.539 41.667 0.00 0.00 0.00 4.17
77 80 2.156098 GGCTCGGTGTTCCATGTTTTA 58.844 47.619 0.00 0.00 0.00 1.52
92 95 5.643777 TCATCTAAAAGGAAGAAAAGGCTCG 59.356 40.000 0.00 0.00 0.00 5.03
97 100 7.121907 CCCCTTCTCATCTAAAAGGAAGAAAAG 59.878 40.741 1.99 0.00 41.78 2.27
106 109 9.632638 TCATATTTTCCCCTTCTCATCTAAAAG 57.367 33.333 0.00 0.00 0.00 2.27
122 125 8.309163 TCAAATGTGCTTGTTTCATATTTTCC 57.691 30.769 0.00 0.00 34.49 3.13
205 212 9.146984 CACACATTTCTTTTATCATTCAATGCT 57.853 29.630 0.00 0.00 0.00 3.79
356 1611 6.617784 TGGAAGTAATATATCACCCAACCAGA 59.382 38.462 0.00 0.00 0.00 3.86
358 1613 6.409925 GGTGGAAGTAATATATCACCCAACCA 60.410 42.308 7.48 0.00 38.83 3.67
359 1614 6.002082 GGTGGAAGTAATATATCACCCAACC 58.998 44.000 7.48 0.00 38.83 3.77
376 1631 0.547712 TTCTCTCCCCAGGGTGGAAG 60.548 60.000 4.22 0.00 40.96 3.46
388 1643 7.516943 CGTGAAACTAAGTTTTGTCTTCTCTCC 60.517 40.741 0.00 0.00 35.77 3.71
413 1668 2.159476 GCCAGCATATCCATGTATTGCG 60.159 50.000 0.00 0.00 34.40 4.85
451 1706 6.052360 TGTCTGCAACTTACAATGACAGTTA 58.948 36.000 0.00 0.00 0.00 2.24
452 1707 4.881273 TGTCTGCAACTTACAATGACAGTT 59.119 37.500 0.00 0.00 0.00 3.16
460 1715 5.278907 CCATTTCCATGTCTGCAACTTACAA 60.279 40.000 0.00 0.00 0.00 2.41
474 1729 7.315247 TGTATTCGTTCTTACCATTTCCATG 57.685 36.000 0.00 0.00 0.00 3.66
491 1746 1.887320 GCAACTGCAGCTTGTATTCG 58.113 50.000 15.27 0.00 41.59 3.34
553 1808 9.920133 CAGCGATATACTGATATATAGGCAATT 57.080 33.333 0.00 0.00 36.57 2.32
589 1844 0.625849 GATGGTGGGGTCCTGTGATT 59.374 55.000 0.00 0.00 0.00 2.57
614 1869 4.520111 TCAACATTTCTTGGTCTGGATGTG 59.480 41.667 0.00 0.00 0.00 3.21
616 1871 5.474532 TCTTCAACATTTCTTGGTCTGGATG 59.525 40.000 0.00 0.00 0.00 3.51
620 1875 6.860023 GTCATTCTTCAACATTTCTTGGTCTG 59.140 38.462 0.00 0.00 0.00 3.51
676 1931 0.948678 ACGCGGTTGTGCATAACTTT 59.051 45.000 23.28 5.26 34.15 2.66
679 1934 0.179225 CAGACGCGGTTGTGCATAAC 60.179 55.000 17.21 17.21 34.15 1.89
785 2049 2.162408 GCCATGGTAGTTTGCTCAACTC 59.838 50.000 14.67 0.00 42.62 3.01
801 2065 1.566404 TCGCATACTTGTACGCCATG 58.434 50.000 0.00 0.00 0.00 3.66
974 2248 2.025605 ACAATGCTGGTGGTGATGAGAT 60.026 45.455 0.00 0.00 0.00 2.75
1140 2414 1.559368 CAGATGGAATGGGTTGGCAA 58.441 50.000 0.00 0.00 0.00 4.52
1205 2479 4.735132 TGGCGGCTTCTTCGACGG 62.735 66.667 11.43 0.00 38.72 4.79
1209 2483 1.154205 AATCGATGGCGGCTTCTTCG 61.154 55.000 20.27 17.15 38.28 3.79
1248 2522 1.000955 TGCCTTTCAGAGACGAAGACC 59.999 52.381 0.00 0.00 0.00 3.85
1266 2540 0.667792 GAGTCTCGAGGTGGTGTTGC 60.668 60.000 13.56 0.00 0.00 4.17
1324 2598 2.160171 CCCCCAAGGTGAAGACCCA 61.160 63.158 0.00 0.00 44.40 4.51
1471 2745 2.046604 GGGGCTACGGCGTTCTTT 60.047 61.111 21.24 0.00 39.81 2.52
1592 2866 8.851416 CAAAGACAAGTACAAAGTAGTAGATCG 58.149 37.037 0.00 0.00 0.00 3.69
1593 2867 9.141400 CCAAAGACAAGTACAAAGTAGTAGATC 57.859 37.037 0.00 0.00 0.00 2.75
1594 2868 8.867097 TCCAAAGACAAGTACAAAGTAGTAGAT 58.133 33.333 0.00 0.00 0.00 1.98
1595 2869 8.241497 TCCAAAGACAAGTACAAAGTAGTAGA 57.759 34.615 0.00 0.00 0.00 2.59
1958 3246 2.831526 CCCAGTTATCCCCAACCTTTTG 59.168 50.000 0.00 0.00 0.00 2.44
2284 3572 1.946984 CCACAAGGGTAGGTACCTCA 58.053 55.000 20.32 2.04 45.72 3.86
2332 3620 1.528586 GTGCAAGTGTGTGCTACTGAG 59.471 52.381 0.00 0.00 45.17 3.35
2340 3628 1.663643 ACGTAACTGTGCAAGTGTGTG 59.336 47.619 0.00 0.00 39.81 3.82
2359 3647 9.551734 AGAACGGGGAAGTATAATTAATGTAAC 57.448 33.333 0.00 0.00 0.00 2.50
2463 3752 8.461685 TTCCCATGATGGATCTGGTATTATAA 57.538 34.615 14.26 0.00 40.96 0.98
2569 3873 4.923281 AGGTGCATCAATTTTCGTTAAAGC 59.077 37.500 0.00 0.00 0.00 3.51
2620 3924 4.904116 TGTTTTAGACAGCTTGAACAACG 58.096 39.130 0.00 0.00 33.40 4.10
2623 3927 6.127758 ACACAATGTTTTAGACAGCTTGAACA 60.128 34.615 0.00 0.00 42.62 3.18
2853 4157 2.823154 TGAACCAAAAGATAAAGGGGCG 59.177 45.455 0.00 0.00 0.00 6.13
2889 4193 2.159653 GCCAGTCATAAACAGTCGCAAG 60.160 50.000 0.00 0.00 0.00 4.01
2915 4219 3.804325 CAGAGCACCCATAGTCAATAACG 59.196 47.826 0.00 0.00 0.00 3.18
3051 4358 5.118817 GGCGTAGATCTCCAATATTTCGTTC 59.881 44.000 0.00 0.00 0.00 3.95
3172 4479 1.726853 CAAGGCTGCAGTAGTGGTAC 58.273 55.000 16.64 0.00 0.00 3.34
3441 4752 2.687370 CAGTGTGTGTCGATCCAATCA 58.313 47.619 0.00 0.00 0.00 2.57
3450 4761 2.246739 CCACTGGCAGTGTGTGTCG 61.247 63.158 37.43 22.07 44.50 4.35
3558 4875 4.791411 GCGTTCATCAGGTAAACAGCAAAA 60.791 41.667 0.00 0.00 0.00 2.44
3584 4902 4.357947 TCACCACAGAGCGGTCGC 62.358 66.667 9.28 7.32 42.33 5.19
3627 4945 4.612412 TGGTTCACGTGCCCGGAC 62.612 66.667 11.67 0.00 38.78 4.79
3999 5323 4.209080 GCGAAAGATCAACAAACCCTTTTG 59.791 41.667 0.00 0.00 46.61 2.44
4008 5332 2.087501 TAGCGGCGAAAGATCAACAA 57.912 45.000 12.98 0.00 0.00 2.83
4031 5355 1.031571 GCGTCAATCCAGCCATTCCA 61.032 55.000 0.00 0.00 0.00 3.53
4040 5364 1.377202 GAGCCCAAGCGTCAATCCA 60.377 57.895 0.00 0.00 46.67 3.41
4046 5370 1.237285 ACAATGTGAGCCCAAGCGTC 61.237 55.000 0.00 0.00 46.67 5.19
4060 5398 2.797087 GCAATCGATCCAGGCAACAATG 60.797 50.000 0.00 0.00 41.41 2.82
4062 5400 0.810648 GCAATCGATCCAGGCAACAA 59.189 50.000 0.00 0.00 41.41 2.83
4075 5413 9.507280 AAATAACAAATACATCTCAAGCAATCG 57.493 29.630 0.00 0.00 0.00 3.34
4097 5435 4.088634 AGGCAGCAATCCAAACAGAAATA 58.911 39.130 0.00 0.00 0.00 1.40
4117 5455 1.207089 TCGATAGCAACCCAGACAAGG 59.793 52.381 0.00 0.00 0.00 3.61
4120 5458 0.535335 GGTCGATAGCAACCCAGACA 59.465 55.000 0.00 0.00 0.00 3.41
4121 5459 3.364277 GGTCGATAGCAACCCAGAC 57.636 57.895 0.00 0.00 0.00 3.51
4127 5465 4.272748 GGAATACAAAGGGTCGATAGCAAC 59.727 45.833 0.00 0.00 0.00 4.17
4129 5467 3.452990 TGGAATACAAAGGGTCGATAGCA 59.547 43.478 0.00 0.00 0.00 3.49
4131 5469 4.809426 GTGTGGAATACAAAGGGTCGATAG 59.191 45.833 0.00 0.00 41.89 2.08
4132 5470 4.223255 TGTGTGGAATACAAAGGGTCGATA 59.777 41.667 0.00 0.00 41.89 2.92
4133 5471 3.008594 TGTGTGGAATACAAAGGGTCGAT 59.991 43.478 0.00 0.00 41.89 3.59
4135 5473 2.773487 TGTGTGGAATACAAAGGGTCG 58.227 47.619 0.00 0.00 41.89 4.79
4136 5474 5.242838 TGAAATGTGTGGAATACAAAGGGTC 59.757 40.000 0.00 0.00 42.67 4.46
4137 5475 5.144100 TGAAATGTGTGGAATACAAAGGGT 58.856 37.500 0.00 0.00 42.67 4.34
4138 5476 5.720371 TGAAATGTGTGGAATACAAAGGG 57.280 39.130 0.00 0.00 42.67 3.95
4139 5477 7.161773 AGATGAAATGTGTGGAATACAAAGG 57.838 36.000 0.00 0.00 42.67 3.11
4140 5478 9.480053 AAAAGATGAAATGTGTGGAATACAAAG 57.520 29.630 0.00 0.00 42.67 2.77
4141 5479 9.474920 GAAAAGATGAAATGTGTGGAATACAAA 57.525 29.630 0.00 0.00 42.67 2.83
4144 5482 7.542130 GTGGAAAAGATGAAATGTGTGGAATAC 59.458 37.037 0.00 0.00 0.00 1.89
4145 5483 7.232330 TGTGGAAAAGATGAAATGTGTGGAATA 59.768 33.333 0.00 0.00 0.00 1.75
4146 5484 6.041865 TGTGGAAAAGATGAAATGTGTGGAAT 59.958 34.615 0.00 0.00 0.00 3.01
4147 5485 5.362143 TGTGGAAAAGATGAAATGTGTGGAA 59.638 36.000 0.00 0.00 0.00 3.53
4148 5486 4.892345 TGTGGAAAAGATGAAATGTGTGGA 59.108 37.500 0.00 0.00 0.00 4.02
4149 5487 4.984161 GTGTGGAAAAGATGAAATGTGTGG 59.016 41.667 0.00 0.00 0.00 4.17
4150 5488 5.590145 TGTGTGGAAAAGATGAAATGTGTG 58.410 37.500 0.00 0.00 0.00 3.82
4153 5491 7.499292 TGAAATGTGTGGAAAAGATGAAATGT 58.501 30.769 0.00 0.00 0.00 2.71
4154 5492 7.949903 TGAAATGTGTGGAAAAGATGAAATG 57.050 32.000 0.00 0.00 0.00 2.32
4155 5493 8.591072 AGATGAAATGTGTGGAAAAGATGAAAT 58.409 29.630 0.00 0.00 0.00 2.17
4158 5496 7.372714 CAAGATGAAATGTGTGGAAAAGATGA 58.627 34.615 0.00 0.00 0.00 2.92
4161 5499 5.302568 AGCAAGATGAAATGTGTGGAAAAGA 59.697 36.000 0.00 0.00 0.00 2.52
4162 5500 5.404366 CAGCAAGATGAAATGTGTGGAAAAG 59.596 40.000 0.00 0.00 0.00 2.27
4163 5501 5.163426 ACAGCAAGATGAAATGTGTGGAAAA 60.163 36.000 0.00 0.00 0.00 2.29
4164 5502 4.341806 ACAGCAAGATGAAATGTGTGGAAA 59.658 37.500 0.00 0.00 0.00 3.13
4168 5506 6.684131 CGTATTACAGCAAGATGAAATGTGTG 59.316 38.462 0.00 0.00 0.00 3.82
4192 5530 9.569167 TCATATAAAACTCTGAAGTCTTGTACG 57.431 33.333 0.00 0.00 33.48 3.67
4229 5567 3.128242 CAGCAAAAGCAGGGACTATTCAG 59.872 47.826 0.00 0.00 36.02 3.02
4233 5571 2.040278 TGACAGCAAAAGCAGGGACTAT 59.960 45.455 0.00 0.00 36.02 2.12
4237 5575 0.106769 TGTGACAGCAAAAGCAGGGA 60.107 50.000 0.00 0.00 0.00 4.20
4253 5591 8.180267 TGCCATGAAAATTTAACAAAACTTGTG 58.820 29.630 0.00 0.00 44.59 3.33
4269 5607 6.154203 TGAATTGTACTTGTGCCATGAAAA 57.846 33.333 0.00 0.00 0.00 2.29
4277 5615 9.571810 TCAATAATGAATGAATTGTACTTGTGC 57.428 29.630 0.00 0.00 33.35 4.57
4315 5653 9.542462 TCCCTTTCTATGTAAAATAGATCGTTG 57.458 33.333 0.00 0.00 31.45 4.10
4328 5666 6.069905 TGGTGCAACTTATCCCTTTCTATGTA 60.070 38.462 2.04 0.00 36.74 2.29
4340 5678 5.413499 AGCATTTGAATGGTGCAACTTATC 58.587 37.500 2.04 0.00 44.67 1.75
4341 5679 5.047164 TGAGCATTTGAATGGTGCAACTTAT 60.047 36.000 12.62 0.00 46.18 1.73
4343 5681 3.069872 TGAGCATTTGAATGGTGCAACTT 59.930 39.130 12.62 0.00 46.18 2.66
4344 5682 2.629137 TGAGCATTTGAATGGTGCAACT 59.371 40.909 12.62 0.00 46.18 3.16
4345 5683 3.029320 TGAGCATTTGAATGGTGCAAC 57.971 42.857 12.62 0.00 46.18 4.17
4348 5718 3.513680 TGATGAGCATTTGAATGGTGC 57.486 42.857 12.62 5.97 46.18 5.01
4351 5721 5.716094 TCAAGTTGATGAGCATTTGAATGG 58.284 37.500 0.08 0.00 36.90 3.16
4366 5736 2.494059 GTGCCAGCTACTTCAAGTTGA 58.506 47.619 0.08 0.08 29.89 3.18
4376 5746 0.178301 GGGAACTAGGTGCCAGCTAC 59.822 60.000 14.43 0.00 31.39 3.58
4382 5782 0.914902 AGGAAGGGGAACTAGGTGCC 60.915 60.000 10.44 10.44 0.00 5.01
4391 5791 2.787035 ACTTTGTTGGTAGGAAGGGGAA 59.213 45.455 0.00 0.00 0.00 3.97
4396 5796 3.550842 GCAGCAACTTTGTTGGTAGGAAG 60.551 47.826 13.55 4.29 39.42 3.46
4397 5797 2.360801 GCAGCAACTTTGTTGGTAGGAA 59.639 45.455 13.55 0.00 39.42 3.36
4423 5823 1.523758 AGTTGTTGGATCTCGGTTGC 58.476 50.000 0.00 0.00 0.00 4.17
4449 5849 2.821366 CATCCGGTCAGGCTGTGC 60.821 66.667 15.27 8.73 40.77 4.57
4454 5854 1.983119 TTCATCCCATCCGGTCAGGC 61.983 60.000 0.00 0.00 40.77 4.85
4486 5886 0.460311 GACGGCCACTGTGCTAGTAT 59.540 55.000 2.24 0.00 37.60 2.12
4490 5890 1.468506 TTCAGACGGCCACTGTGCTA 61.469 55.000 21.21 4.87 36.81 3.49
4491 5891 2.324014 TTTCAGACGGCCACTGTGCT 62.324 55.000 21.21 2.31 36.81 4.40
4492 5892 1.237285 ATTTCAGACGGCCACTGTGC 61.237 55.000 21.21 0.00 36.81 4.57
4493 5893 0.518636 CATTTCAGACGGCCACTGTG 59.481 55.000 21.21 12.06 36.81 3.66
4494 5894 1.237285 GCATTTCAGACGGCCACTGT 61.237 55.000 21.21 4.25 36.81 3.55
4495 5895 1.503542 GCATTTCAGACGGCCACTG 59.496 57.895 17.59 17.59 36.80 3.66
4496 5896 2.034879 CGCATTTCAGACGGCCACT 61.035 57.895 2.24 0.00 0.00 4.00
4497 5897 1.970917 CTCGCATTTCAGACGGCCAC 61.971 60.000 2.24 0.00 0.00 5.01
4498 5898 1.741401 CTCGCATTTCAGACGGCCA 60.741 57.895 2.24 0.00 0.00 5.36
4499 5899 2.464459 CCTCGCATTTCAGACGGCC 61.464 63.158 0.00 0.00 0.00 6.13
4500 5900 2.464459 CCCTCGCATTTCAGACGGC 61.464 63.158 0.00 0.00 0.00 5.68
4501 5901 2.464459 GCCCTCGCATTTCAGACGG 61.464 63.158 0.00 0.00 34.03 4.79
4502 5902 1.741401 TGCCCTCGCATTTCAGACG 60.741 57.895 0.00 0.00 41.12 4.18
4503 5903 4.301505 TGCCCTCGCATTTCAGAC 57.698 55.556 0.00 0.00 41.12 3.51
4512 5912 1.098050 ATGAAAAGTGATGCCCTCGC 58.902 50.000 0.00 0.00 34.41 5.03
4513 5913 3.270027 TGTATGAAAAGTGATGCCCTCG 58.730 45.455 0.00 0.00 0.00 4.63
4514 5914 5.450965 CCAATGTATGAAAAGTGATGCCCTC 60.451 44.000 0.00 0.00 0.00 4.30
4515 5915 4.403432 CCAATGTATGAAAAGTGATGCCCT 59.597 41.667 0.00 0.00 0.00 5.19
4516 5916 4.402155 TCCAATGTATGAAAAGTGATGCCC 59.598 41.667 0.00 0.00 0.00 5.36
4517 5917 5.581126 TCCAATGTATGAAAAGTGATGCC 57.419 39.130 0.00 0.00 0.00 4.40
4518 5918 9.754382 ATTATTCCAATGTATGAAAAGTGATGC 57.246 29.630 0.00 0.00 0.00 3.91
4550 5950 9.603921 CCATGCATAAAACCTCAGAAATATTTT 57.396 29.630 0.00 0.00 0.00 1.82
4551 5951 8.980596 TCCATGCATAAAACCTCAGAAATATTT 58.019 29.630 0.00 0.00 0.00 1.40
4552 5952 8.537728 TCCATGCATAAAACCTCAGAAATATT 57.462 30.769 0.00 0.00 0.00 1.28
4553 5953 8.716674 ATCCATGCATAAAACCTCAGAAATAT 57.283 30.769 0.00 0.00 0.00 1.28
4554 5954 9.812347 ATATCCATGCATAAAACCTCAGAAATA 57.188 29.630 0.00 0.00 0.00 1.40
4555 5955 8.716674 ATATCCATGCATAAAACCTCAGAAAT 57.283 30.769 0.00 0.00 0.00 2.17
4556 5956 9.812347 ATATATCCATGCATAAAACCTCAGAAA 57.188 29.630 0.00 0.00 0.00 2.52
4557 5957 9.812347 AATATATCCATGCATAAAACCTCAGAA 57.188 29.630 0.00 0.00 0.00 3.02
4584 5984 9.420118 TCATGGCCTAAATATTTCAGTTTACAT 57.580 29.630 3.32 0.00 0.00 2.29
4585 5985 8.815565 TCATGGCCTAAATATTTCAGTTTACA 57.184 30.769 3.32 0.00 0.00 2.41
4597 5997 9.541884 TGTAGTGACTATATCATGGCCTAAATA 57.458 33.333 3.32 0.00 40.28 1.40
4598 5998 8.435931 TGTAGTGACTATATCATGGCCTAAAT 57.564 34.615 3.32 0.00 40.28 1.40
4599 5999 7.849322 TGTAGTGACTATATCATGGCCTAAA 57.151 36.000 3.32 0.00 40.28 1.85
4600 6000 7.849322 TTGTAGTGACTATATCATGGCCTAA 57.151 36.000 3.32 0.00 40.28 2.69
4601 6001 8.435931 AATTGTAGTGACTATATCATGGCCTA 57.564 34.615 3.32 0.00 40.28 3.93
4602 6002 6.942163 ATTGTAGTGACTATATCATGGCCT 57.058 37.500 3.32 0.00 40.28 5.19
4603 6003 7.986085 AAATTGTAGTGACTATATCATGGCC 57.014 36.000 0.00 0.00 40.28 5.36
4627 6027 4.859798 CCACACACGTTCTTTTAGCAAAAA 59.140 37.500 0.00 0.00 33.58 1.94
4628 6028 4.156190 TCCACACACGTTCTTTTAGCAAAA 59.844 37.500 0.00 0.00 0.00 2.44
4629 6029 3.690139 TCCACACACGTTCTTTTAGCAAA 59.310 39.130 0.00 0.00 0.00 3.68
4630 6030 3.271729 TCCACACACGTTCTTTTAGCAA 58.728 40.909 0.00 0.00 0.00 3.91
4631 6031 2.907634 TCCACACACGTTCTTTTAGCA 58.092 42.857 0.00 0.00 0.00 3.49
4632 6032 4.483476 AATCCACACACGTTCTTTTAGC 57.517 40.909 0.00 0.00 0.00 3.09
4633 6033 6.780706 AGTAATCCACACACGTTCTTTTAG 57.219 37.500 0.00 0.00 0.00 1.85
4634 6034 6.987992 AGAAGTAATCCACACACGTTCTTTTA 59.012 34.615 0.00 0.00 0.00 1.52
4635 6035 5.820947 AGAAGTAATCCACACACGTTCTTTT 59.179 36.000 0.00 0.00 0.00 2.27
4636 6036 5.365619 AGAAGTAATCCACACACGTTCTTT 58.634 37.500 0.00 0.00 0.00 2.52
4637 6037 4.957296 AGAAGTAATCCACACACGTTCTT 58.043 39.130 0.00 0.00 0.00 2.52
4638 6038 4.602340 AGAAGTAATCCACACACGTTCT 57.398 40.909 0.00 0.00 0.00 3.01
4639 6039 5.668558 AAAGAAGTAATCCACACACGTTC 57.331 39.130 0.00 0.00 0.00 3.95
4640 6040 7.739498 ATTAAAGAAGTAATCCACACACGTT 57.261 32.000 0.00 0.00 0.00 3.99
4641 6041 7.739498 AATTAAAGAAGTAATCCACACACGT 57.261 32.000 0.00 0.00 0.00 4.49
4685 6085 9.747898 AGTGTTTTGGAATTGGTATAGTAATCA 57.252 29.630 0.00 0.00 0.00 2.57
4700 6100 9.521841 TGTGGATGTTAATATAGTGTTTTGGAA 57.478 29.630 0.00 0.00 0.00 3.53
4701 6101 9.693739 ATGTGGATGTTAATATAGTGTTTTGGA 57.306 29.630 0.00 0.00 0.00 3.53
4702 6102 9.734620 CATGTGGATGTTAATATAGTGTTTTGG 57.265 33.333 0.00 0.00 0.00 3.28
4705 6105 8.840321 GCTCATGTGGATGTTAATATAGTGTTT 58.160 33.333 0.00 0.00 0.00 2.83
4706 6106 7.445402 GGCTCATGTGGATGTTAATATAGTGTT 59.555 37.037 0.00 0.00 0.00 3.32
4707 6107 6.936900 GGCTCATGTGGATGTTAATATAGTGT 59.063 38.462 0.00 0.00 0.00 3.55
4708 6108 6.091305 CGGCTCATGTGGATGTTAATATAGTG 59.909 42.308 0.00 0.00 0.00 2.74
4709 6109 6.014584 TCGGCTCATGTGGATGTTAATATAGT 60.015 38.462 0.00 0.00 0.00 2.12
4710 6110 6.398095 TCGGCTCATGTGGATGTTAATATAG 58.602 40.000 0.00 0.00 0.00 1.31
4711 6111 6.353404 TCGGCTCATGTGGATGTTAATATA 57.647 37.500 0.00 0.00 0.00 0.86
4712 6112 5.227569 TCGGCTCATGTGGATGTTAATAT 57.772 39.130 0.00 0.00 0.00 1.28
4713 6113 4.681074 TCGGCTCATGTGGATGTTAATA 57.319 40.909 0.00 0.00 0.00 0.98
4714 6114 3.558931 TCGGCTCATGTGGATGTTAAT 57.441 42.857 0.00 0.00 0.00 1.40
4715 6115 3.558931 ATCGGCTCATGTGGATGTTAA 57.441 42.857 0.00 0.00 0.00 2.01
4716 6116 3.558931 AATCGGCTCATGTGGATGTTA 57.441 42.857 0.00 0.00 0.00 2.41
4717 6117 2.425143 AATCGGCTCATGTGGATGTT 57.575 45.000 0.00 0.00 0.00 2.71
4718 6118 2.425143 AAATCGGCTCATGTGGATGT 57.575 45.000 0.00 0.00 0.00 3.06
4719 6119 4.276678 ACATAAAATCGGCTCATGTGGATG 59.723 41.667 0.00 0.00 0.00 3.51
4720 6120 4.464008 ACATAAAATCGGCTCATGTGGAT 58.536 39.130 0.00 0.00 0.00 3.41
4721 6121 3.884895 ACATAAAATCGGCTCATGTGGA 58.115 40.909 0.00 0.00 0.00 4.02
4722 6122 4.816385 ACTACATAAAATCGGCTCATGTGG 59.184 41.667 0.00 0.00 35.11 4.17
4723 6123 5.991328 ACTACATAAAATCGGCTCATGTG 57.009 39.130 0.00 0.00 32.39 3.21
4724 6124 7.250569 CAAAACTACATAAAATCGGCTCATGT 58.749 34.615 0.00 0.00 34.40 3.21
4725 6125 6.692681 CCAAAACTACATAAAATCGGCTCATG 59.307 38.462 0.00 0.00 0.00 3.07
4726 6126 6.377146 ACCAAAACTACATAAAATCGGCTCAT 59.623 34.615 0.00 0.00 0.00 2.90
4727 6127 5.708230 ACCAAAACTACATAAAATCGGCTCA 59.292 36.000 0.00 0.00 0.00 4.26
4728 6128 6.190954 ACCAAAACTACATAAAATCGGCTC 57.809 37.500 0.00 0.00 0.00 4.70
4729 6129 7.107542 TCTACCAAAACTACATAAAATCGGCT 58.892 34.615 0.00 0.00 0.00 5.52
4730 6130 7.311364 TCTACCAAAACTACATAAAATCGGC 57.689 36.000 0.00 0.00 0.00 5.54
4772 6172 9.122779 GCCGACCTAGATTGTTATATCTATAGT 57.877 37.037 0.00 0.00 36.73 2.12
4773 6173 9.121658 TGCCGACCTAGATTGTTATATCTATAG 57.878 37.037 0.00 0.00 36.73 1.31
4774 6174 9.642343 ATGCCGACCTAGATTGTTATATCTATA 57.358 33.333 0.00 0.00 36.73 1.31
4775 6175 7.956328 TGCCGACCTAGATTGTTATATCTAT 57.044 36.000 0.00 0.00 36.73 1.98
4776 6176 7.956328 ATGCCGACCTAGATTGTTATATCTA 57.044 36.000 0.00 0.00 36.34 1.98
4777 6177 6.859112 ATGCCGACCTAGATTGTTATATCT 57.141 37.500 0.00 0.00 38.41 1.98
4778 6178 6.313905 CCAATGCCGACCTAGATTGTTATATC 59.686 42.308 0.00 0.00 0.00 1.63
4779 6179 6.173339 CCAATGCCGACCTAGATTGTTATAT 58.827 40.000 0.00 0.00 0.00 0.86
4780 6180 5.547465 CCAATGCCGACCTAGATTGTTATA 58.453 41.667 0.00 0.00 0.00 0.98
4781 6181 4.389374 CCAATGCCGACCTAGATTGTTAT 58.611 43.478 0.00 0.00 0.00 1.89
4782 6182 3.804036 CCAATGCCGACCTAGATTGTTA 58.196 45.455 0.00 0.00 0.00 2.41
4783 6183 2.643551 CCAATGCCGACCTAGATTGTT 58.356 47.619 0.00 0.00 0.00 2.83
4784 6184 1.747206 GCCAATGCCGACCTAGATTGT 60.747 52.381 0.00 0.00 0.00 2.71
4785 6185 0.947244 GCCAATGCCGACCTAGATTG 59.053 55.000 0.00 0.00 0.00 2.67
4786 6186 3.403936 GCCAATGCCGACCTAGATT 57.596 52.632 0.00 0.00 0.00 2.40
4797 6197 5.693104 CACTTAAATGTCATATGGCCAATGC 59.307 40.000 10.96 11.39 0.00 3.56
4798 6198 6.808829 ACACTTAAATGTCATATGGCCAATG 58.191 36.000 10.96 15.13 0.00 2.82
4799 6199 7.779798 ACTACACTTAAATGTCATATGGCCAAT 59.220 33.333 10.96 1.41 33.85 3.16
4800 6200 7.116075 ACTACACTTAAATGTCATATGGCCAA 58.884 34.615 10.96 0.00 33.85 4.52
4801 6201 6.658849 ACTACACTTAAATGTCATATGGCCA 58.341 36.000 8.56 8.56 33.85 5.36
4802 6202 6.992715 AGACTACACTTAAATGTCATATGGCC 59.007 38.462 4.54 0.00 33.85 5.36
4803 6203 7.041780 CCAGACTACACTTAAATGTCATATGGC 60.042 40.741 0.00 0.00 33.85 4.40
4804 6204 8.204160 TCCAGACTACACTTAAATGTCATATGG 58.796 37.037 2.13 7.47 33.36 2.74
4805 6205 9.599866 TTCCAGACTACACTTAAATGTCATATG 57.400 33.333 0.00 0.00 33.85 1.78
4806 6206 9.823647 CTTCCAGACTACACTTAAATGTCATAT 57.176 33.333 0.00 0.00 33.85 1.78
4807 6207 9.031537 TCTTCCAGACTACACTTAAATGTCATA 57.968 33.333 0.00 0.00 33.85 2.15
4808 6208 7.819900 GTCTTCCAGACTACACTTAAATGTCAT 59.180 37.037 0.00 0.00 41.88 3.06
4809 6209 7.152645 GTCTTCCAGACTACACTTAAATGTCA 58.847 38.462 0.00 0.00 41.88 3.58
4810 6210 6.590677 GGTCTTCCAGACTACACTTAAATGTC 59.409 42.308 0.00 0.00 44.46 3.06
4811 6211 6.042781 TGGTCTTCCAGACTACACTTAAATGT 59.957 38.462 3.97 0.00 44.46 2.71
4812 6212 6.464222 TGGTCTTCCAGACTACACTTAAATG 58.536 40.000 3.97 0.00 44.46 2.32
4813 6213 6.681729 TGGTCTTCCAGACTACACTTAAAT 57.318 37.500 3.97 0.00 44.46 1.40
4814 6214 6.488769 TTGGTCTTCCAGACTACACTTAAA 57.511 37.500 3.97 0.00 44.46 1.52
4815 6215 6.269077 TCATTGGTCTTCCAGACTACACTTAA 59.731 38.462 3.97 0.00 44.46 1.85
4816 6216 5.778241 TCATTGGTCTTCCAGACTACACTTA 59.222 40.000 3.97 0.00 44.46 2.24
4817 6217 4.593206 TCATTGGTCTTCCAGACTACACTT 59.407 41.667 3.97 0.00 44.46 3.16
4818 6218 4.160329 TCATTGGTCTTCCAGACTACACT 58.840 43.478 3.97 0.00 44.46 3.55
4819 6219 4.021016 ACTCATTGGTCTTCCAGACTACAC 60.021 45.833 3.97 0.00 44.46 2.90
4820 6220 4.160329 ACTCATTGGTCTTCCAGACTACA 58.840 43.478 3.97 0.00 44.46 2.74
4821 6221 4.810191 ACTCATTGGTCTTCCAGACTAC 57.190 45.455 3.97 0.00 44.46 2.73
4822 6222 4.838423 TCAACTCATTGGTCTTCCAGACTA 59.162 41.667 3.97 0.00 44.46 2.59
4823 6223 3.648067 TCAACTCATTGGTCTTCCAGACT 59.352 43.478 3.97 0.00 44.46 3.24
4824 6224 4.008074 TCAACTCATTGGTCTTCCAGAC 57.992 45.455 0.00 0.00 45.22 3.51
4825 6225 4.705110 TTCAACTCATTGGTCTTCCAGA 57.295 40.909 0.00 0.00 45.22 3.86
4826 6226 5.005740 TGATTCAACTCATTGGTCTTCCAG 58.994 41.667 0.00 0.00 45.22 3.86
4827 6227 4.761739 GTGATTCAACTCATTGGTCTTCCA 59.238 41.667 0.00 0.00 42.66 3.53
4828 6228 4.156739 GGTGATTCAACTCATTGGTCTTCC 59.843 45.833 0.00 0.00 36.39 3.46
4829 6229 4.761739 TGGTGATTCAACTCATTGGTCTTC 59.238 41.667 2.91 0.00 36.39 2.87
4830 6230 4.728772 TGGTGATTCAACTCATTGGTCTT 58.271 39.130 2.91 0.00 36.39 3.01
4831 6231 4.371624 TGGTGATTCAACTCATTGGTCT 57.628 40.909 2.91 0.00 36.39 3.85
4832 6232 4.520492 ACTTGGTGATTCAACTCATTGGTC 59.480 41.667 2.91 0.00 36.39 4.02
4833 6233 4.279169 CACTTGGTGATTCAACTCATTGGT 59.721 41.667 2.91 0.00 35.23 3.67
4834 6234 4.801891 CACTTGGTGATTCAACTCATTGG 58.198 43.478 2.91 0.00 35.23 3.16
4835 6235 4.022589 AGCACTTGGTGATTCAACTCATTG 60.023 41.667 2.91 0.00 35.23 2.82
4836 6236 4.022589 CAGCACTTGGTGATTCAACTCATT 60.023 41.667 2.91 0.00 45.66 2.57
4837 6237 3.504906 CAGCACTTGGTGATTCAACTCAT 59.495 43.478 2.91 0.00 45.66 2.90
4838 6238 2.880268 CAGCACTTGGTGATTCAACTCA 59.120 45.455 2.91 0.00 45.66 3.41
4839 6239 3.141398 TCAGCACTTGGTGATTCAACTC 58.859 45.455 7.03 0.00 46.24 3.01
4840 6240 3.213206 TCAGCACTTGGTGATTCAACT 57.787 42.857 7.03 0.00 46.24 3.16
4848 6248 3.928727 AACATCATTCAGCACTTGGTG 57.071 42.857 1.86 1.86 44.29 4.17
4849 6249 5.948162 AGATAAACATCATTCAGCACTTGGT 59.052 36.000 0.00 0.00 0.00 3.67
4850 6250 6.446781 AGATAAACATCATTCAGCACTTGG 57.553 37.500 0.00 0.00 0.00 3.61
4913 6313 9.060347 ACAGATCGAATTGCATATGAATACTTT 57.940 29.630 6.97 0.00 0.00 2.66
4914 6314 8.613060 ACAGATCGAATTGCATATGAATACTT 57.387 30.769 6.97 0.00 0.00 2.24
4915 6315 8.093307 AGACAGATCGAATTGCATATGAATACT 58.907 33.333 6.97 0.00 0.00 2.12
4916 6316 8.167345 CAGACAGATCGAATTGCATATGAATAC 58.833 37.037 6.97 0.00 0.00 1.89
4917 6317 7.874528 ACAGACAGATCGAATTGCATATGAATA 59.125 33.333 6.97 0.00 0.00 1.75
4918 6318 6.709397 ACAGACAGATCGAATTGCATATGAAT 59.291 34.615 6.97 0.91 0.00 2.57
4919 6319 6.018507 CACAGACAGATCGAATTGCATATGAA 60.019 38.462 6.97 0.00 0.00 2.57
4920 6320 5.464389 CACAGACAGATCGAATTGCATATGA 59.536 40.000 6.97 0.00 0.00 2.15
4921 6321 5.333875 CCACAGACAGATCGAATTGCATATG 60.334 44.000 0.00 0.00 0.00 1.78
4922 6322 4.753610 CCACAGACAGATCGAATTGCATAT 59.246 41.667 0.00 0.00 0.00 1.78
4923 6323 4.122046 CCACAGACAGATCGAATTGCATA 58.878 43.478 0.00 0.00 0.00 3.14
4924 6324 2.941064 CCACAGACAGATCGAATTGCAT 59.059 45.455 0.00 0.00 0.00 3.96
4925 6325 2.028203 TCCACAGACAGATCGAATTGCA 60.028 45.455 0.00 0.00 0.00 4.08
4926 6326 2.621338 TCCACAGACAGATCGAATTGC 58.379 47.619 0.00 0.00 0.00 3.56
4927 6327 6.045318 AGTAATCCACAGACAGATCGAATTG 58.955 40.000 0.00 0.00 0.00 2.32
4928 6328 6.227298 AGTAATCCACAGACAGATCGAATT 57.773 37.500 0.00 0.00 0.00 2.17
4929 6329 5.860941 AGTAATCCACAGACAGATCGAAT 57.139 39.130 0.00 0.00 0.00 3.34
4930 6330 6.152154 TGTTAGTAATCCACAGACAGATCGAA 59.848 38.462 0.00 0.00 0.00 3.71
4931 6331 5.650703 TGTTAGTAATCCACAGACAGATCGA 59.349 40.000 0.00 0.00 0.00 3.59
4932 6332 5.891451 TGTTAGTAATCCACAGACAGATCG 58.109 41.667 0.00 0.00 0.00 3.69
4933 6333 6.256757 GCTTGTTAGTAATCCACAGACAGATC 59.743 42.308 0.00 0.00 0.00 2.75
4934 6334 6.109359 GCTTGTTAGTAATCCACAGACAGAT 58.891 40.000 0.00 0.00 0.00 2.90
4935 6335 5.479306 GCTTGTTAGTAATCCACAGACAGA 58.521 41.667 0.00 0.00 0.00 3.41
4936 6336 4.631813 GGCTTGTTAGTAATCCACAGACAG 59.368 45.833 0.00 0.00 0.00 3.51
4937 6337 4.041075 TGGCTTGTTAGTAATCCACAGACA 59.959 41.667 0.00 0.00 0.00 3.41
4938 6338 4.575885 TGGCTTGTTAGTAATCCACAGAC 58.424 43.478 0.00 0.00 0.00 3.51
4939 6339 4.901197 TGGCTTGTTAGTAATCCACAGA 57.099 40.909 0.00 0.00 0.00 3.41
4940 6340 4.759693 TGTTGGCTTGTTAGTAATCCACAG 59.240 41.667 0.00 0.00 0.00 3.66
4941 6341 4.720046 TGTTGGCTTGTTAGTAATCCACA 58.280 39.130 0.00 0.00 0.00 4.17
4942 6342 5.414454 TGATGTTGGCTTGTTAGTAATCCAC 59.586 40.000 0.00 0.00 0.00 4.02
4943 6343 5.565509 TGATGTTGGCTTGTTAGTAATCCA 58.434 37.500 0.00 0.00 0.00 3.41
4944 6344 6.509418 TTGATGTTGGCTTGTTAGTAATCC 57.491 37.500 0.00 0.00 0.00 3.01
4945 6345 8.462016 AGATTTGATGTTGGCTTGTTAGTAATC 58.538 33.333 0.00 0.00 0.00 1.75
4946 6346 8.353423 AGATTTGATGTTGGCTTGTTAGTAAT 57.647 30.769 0.00 0.00 0.00 1.89
4947 6347 7.360861 CGAGATTTGATGTTGGCTTGTTAGTAA 60.361 37.037 0.00 0.00 0.00 2.24
4948 6348 6.092122 CGAGATTTGATGTTGGCTTGTTAGTA 59.908 38.462 0.00 0.00 0.00 1.82
4949 6349 5.106555 CGAGATTTGATGTTGGCTTGTTAGT 60.107 40.000 0.00 0.00 0.00 2.24
4950 6350 5.106555 ACGAGATTTGATGTTGGCTTGTTAG 60.107 40.000 0.00 0.00 0.00 2.34
4951 6351 4.759693 ACGAGATTTGATGTTGGCTTGTTA 59.240 37.500 0.00 0.00 0.00 2.41
4952 6352 3.569701 ACGAGATTTGATGTTGGCTTGTT 59.430 39.130 0.00 0.00 0.00 2.83
4953 6353 3.058016 CACGAGATTTGATGTTGGCTTGT 60.058 43.478 0.00 0.00 0.00 3.16
4954 6354 3.495193 CACGAGATTTGATGTTGGCTTG 58.505 45.455 0.00 0.00 0.00 4.01
4955 6355 2.489329 CCACGAGATTTGATGTTGGCTT 59.511 45.455 0.00 0.00 0.00 4.35
4956 6356 2.086869 CCACGAGATTTGATGTTGGCT 58.913 47.619 0.00 0.00 0.00 4.75
4957 6357 1.812571 ACCACGAGATTTGATGTTGGC 59.187 47.619 0.00 0.00 0.00 4.52
4958 6358 4.216257 AGAAACCACGAGATTTGATGTTGG 59.784 41.667 0.00 0.00 0.00 3.77
4959 6359 5.362556 AGAAACCACGAGATTTGATGTTG 57.637 39.130 0.00 0.00 0.00 3.33
4960 6360 6.391227 AAAGAAACCACGAGATTTGATGTT 57.609 33.333 0.00 0.00 0.00 2.71
4961 6361 6.391227 AAAAGAAACCACGAGATTTGATGT 57.609 33.333 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.