Multiple sequence alignment - TraesCS6D01G057900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G057900 chr6D 100.000 8166 0 0 1 8166 27492252 27500417 0.000000e+00 15080.0
1 TraesCS6D01G057900 chr6D 89.091 825 77 6 1 818 249516709 249517527 0.000000e+00 1013.0
2 TraesCS6D01G057900 chr6D 96.471 170 6 0 2235 2404 109240317 109240486 1.740000e-71 281.0
3 TraesCS6D01G057900 chr6D 93.011 186 11 2 2224 2408 119803714 119803530 3.760000e-68 270.0
4 TraesCS6D01G057900 chr6B 93.674 3557 153 31 2397 5922 51025171 51028686 0.000000e+00 5256.0
5 TraesCS6D01G057900 chr6B 91.607 1680 84 27 6014 7668 51028798 51030445 0.000000e+00 2268.0
6 TraesCS6D01G057900 chr6B 93.722 446 24 2 373 817 483502612 483502170 0.000000e+00 665.0
7 TraesCS6D01G057900 chr6B 87.387 555 48 6 1664 2210 51024629 51025169 1.160000e-172 617.0
8 TraesCS6D01G057900 chr6B 89.877 405 22 9 840 1233 51023285 51023681 3.400000e-138 503.0
9 TraesCS6D01G057900 chr6B 88.043 368 24 7 7710 8075 51030443 51030792 1.270000e-112 418.0
10 TraesCS6D01G057900 chr6B 92.188 256 19 1 1374 1628 51024178 51024433 2.170000e-95 361.0
11 TraesCS6D01G057900 chr6B 95.652 46 2 0 8083 8128 51030876 51030831 3.160000e-09 75.0
12 TraesCS6D01G057900 chr6A 95.584 2559 99 10 3367 5922 30726238 30723691 0.000000e+00 4087.0
13 TraesCS6D01G057900 chr6A 88.702 2195 127 45 6014 8164 30723585 30721468 0.000000e+00 2567.0
14 TraesCS6D01G057900 chr6A 86.610 829 44 28 823 1614 30728767 30727969 0.000000e+00 854.0
15 TraesCS6D01G057900 chr6A 96.320 462 16 1 2812 3272 30726713 30726252 0.000000e+00 758.0
16 TraesCS6D01G057900 chr6A 87.080 387 41 7 1840 2221 30727750 30727368 5.860000e-116 429.0
17 TraesCS6D01G057900 chr6A 98.837 86 1 0 2399 2484 30727364 30727279 3.950000e-33 154.0
18 TraesCS6D01G057900 chr6A 87.629 97 12 0 1701 1797 536253968 536253872 6.700000e-21 113.0
19 TraesCS6D01G057900 chr6A 84.146 82 6 3 8083 8164 30721446 30721520 1.140000e-08 73.1
20 TraesCS6D01G057900 chr6A 83.117 77 12 1 1722 1798 453831141 453831066 1.470000e-07 69.4
21 TraesCS6D01G057900 chr1A 91.506 1872 133 13 4072 5922 418053786 418051920 0.000000e+00 2553.0
22 TraesCS6D01G057900 chr1A 86.640 1265 110 31 2865 4078 418055637 418054381 0.000000e+00 1345.0
23 TraesCS6D01G057900 chr1A 85.471 881 68 29 6768 7619 418050824 418049975 0.000000e+00 863.0
24 TraesCS6D01G057900 chr1A 88.062 645 52 11 6137 6768 418051720 418051088 0.000000e+00 741.0
25 TraesCS6D01G057900 chr1A 93.220 59 4 0 1737 1795 458568007 458567949 4.060000e-13 87.9
26 TraesCS6D01G057900 chr1A 91.379 58 5 0 1737 1794 369087212 369087269 6.790000e-11 80.5
27 TraesCS6D01G057900 chr1B 90.787 1867 132 20 4072 5922 438179705 438181547 0.000000e+00 2459.0
28 TraesCS6D01G057900 chr1B 86.825 1260 105 33 2865 4072 438177879 438179129 0.000000e+00 1351.0
29 TraesCS6D01G057900 chr1B 87.715 757 67 11 6014 6769 438181654 438182385 0.000000e+00 859.0
30 TraesCS6D01G057900 chr1B 83.243 925 86 38 6768 7676 438182639 438183510 0.000000e+00 785.0
31 TraesCS6D01G057900 chr1B 79.109 359 44 20 1885 2218 438177052 438177404 1.380000e-52 219.0
32 TraesCS6D01G057900 chr1B 91.379 58 5 0 1737 1794 397817844 397817901 6.790000e-11 80.5
33 TraesCS6D01G057900 chr1D 90.287 1884 135 22 4072 5922 325670054 325671922 0.000000e+00 2422.0
34 TraesCS6D01G057900 chr1D 89.831 826 67 11 1 818 209541205 209540389 0.000000e+00 1044.0
35 TraesCS6D01G057900 chr1D 89.696 757 62 11 6014 6767 325672029 325672772 0.000000e+00 952.0
36 TraesCS6D01G057900 chr1D 84.748 872 79 31 6768 7622 325673037 325673871 0.000000e+00 824.0
37 TraesCS6D01G057900 chr1D 81.571 955 101 36 2694 3605 325668037 325668959 0.000000e+00 719.0
38 TraesCS6D01G057900 chr1D 92.616 474 22 4 3606 4072 325668989 325669456 0.000000e+00 669.0
39 TraesCS6D01G057900 chr1D 96.491 171 6 0 2235 2405 9218373 9218203 4.820000e-72 283.0
40 TraesCS6D01G057900 chr1D 95.000 180 8 1 2224 2403 458805366 458805544 1.740000e-71 281.0
41 TraesCS6D01G057900 chr1D 91.379 58 5 0 1737 1794 296363159 296363216 6.790000e-11 80.5
42 TraesCS6D01G057900 chr5D 97.826 828 10 3 1 823 554765683 554764859 0.000000e+00 1423.0
43 TraesCS6D01G057900 chr3D 96.959 822 17 3 1 817 308771351 308770533 0.000000e+00 1373.0
44 TraesCS6D01G057900 chr3D 96.023 176 7 0 2232 2407 526050793 526050618 3.730000e-73 287.0
45 TraesCS6D01G057900 chr3D 96.000 175 7 0 2236 2410 556141142 556140968 1.340000e-72 285.0
46 TraesCS6D01G057900 chr3D 96.491 171 6 0 2234 2404 550509598 550509428 4.820000e-72 283.0
47 TraesCS6D01G057900 chr3D 76.254 299 56 10 189 473 437946465 437946762 2.380000e-30 145.0
48 TraesCS6D01G057900 chr7B 94.526 822 36 4 1 817 683971175 683971992 0.000000e+00 1260.0
49 TraesCS6D01G057900 chr7B 80.244 739 130 12 4102 4830 561072229 561072961 7.210000e-150 542.0
50 TraesCS6D01G057900 chr7B 81.214 346 43 13 3728 4058 561066168 561066506 8.130000e-65 259.0
51 TraesCS6D01G057900 chr5B 89.806 824 71 7 1 818 203452485 203453301 0.000000e+00 1044.0
52 TraesCS6D01G057900 chr3B 87.787 827 75 14 1 818 749639811 749640620 0.000000e+00 944.0
53 TraesCS6D01G057900 chr7A 80.861 674 122 5 4163 4830 604815539 604816211 2.610000e-144 523.0
54 TraesCS6D01G057900 chr7A 84.570 337 44 4 3728 4058 604814425 604814759 2.200000e-85 327.0
55 TraesCS6D01G057900 chr7A 84.729 203 24 6 3606 3807 127657621 127657425 6.470000e-46 196.0
56 TraesCS6D01G057900 chr4D 97.059 170 5 0 2234 2403 93336682 93336851 3.730000e-73 287.0
57 TraesCS6D01G057900 chr5A 94.444 180 9 1 2223 2401 436260556 436260735 8.070000e-70 276.0
58 TraesCS6D01G057900 chr7D 86.700 203 20 6 3606 3807 611354777 611354973 1.380000e-52 219.0
59 TraesCS6D01G057900 chr7D 82.424 165 27 2 7 169 334875116 334874952 8.540000e-30 143.0
60 TraesCS6D01G057900 chr4A 73.385 650 142 26 189 821 703276624 703275989 6.420000e-51 213.0
61 TraesCS6D01G057900 chr4A 84.524 84 5 6 1728 1806 580297675 580297755 8.790000e-10 76.8
62 TraesCS6D01G057900 chr2A 86.806 144 16 3 1 141 1603623 1603766 3.050000e-34 158.0
63 TraesCS6D01G057900 chr3A 89.535 86 8 1 1711 1796 455780040 455780124 3.120000e-19 108.0
64 TraesCS6D01G057900 chr3A 100.000 30 0 0 789 818 687136761 687136732 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G057900 chr6D 27492252 27500417 8165 False 15080.000000 15080 100.000000 1 8166 1 chr6D.!!$F1 8165
1 TraesCS6D01G057900 chr6D 249516709 249517527 818 False 1013.000000 1013 89.091000 1 818 1 chr6D.!!$F3 817
2 TraesCS6D01G057900 chr6B 51023285 51030792 7507 False 1570.500000 5256 90.462667 840 8075 6 chr6B.!!$F1 7235
3 TraesCS6D01G057900 chr6A 30721468 30728767 7299 True 1474.833333 4087 92.188833 823 8164 6 chr6A.!!$R3 7341
4 TraesCS6D01G057900 chr1A 418049975 418055637 5662 True 1375.500000 2553 87.919750 2865 7619 4 chr1A.!!$R2 4754
5 TraesCS6D01G057900 chr1B 438177052 438183510 6458 False 1134.600000 2459 85.535800 1885 7676 5 chr1B.!!$F2 5791
6 TraesCS6D01G057900 chr1D 325668037 325673871 5834 False 1117.200000 2422 87.783600 2694 7622 5 chr1D.!!$F3 4928
7 TraesCS6D01G057900 chr1D 209540389 209541205 816 True 1044.000000 1044 89.831000 1 818 1 chr1D.!!$R2 817
8 TraesCS6D01G057900 chr5D 554764859 554765683 824 True 1423.000000 1423 97.826000 1 823 1 chr5D.!!$R1 822
9 TraesCS6D01G057900 chr3D 308770533 308771351 818 True 1373.000000 1373 96.959000 1 817 1 chr3D.!!$R1 816
10 TraesCS6D01G057900 chr7B 683971175 683971992 817 False 1260.000000 1260 94.526000 1 817 1 chr7B.!!$F3 816
11 TraesCS6D01G057900 chr7B 561072229 561072961 732 False 542.000000 542 80.244000 4102 4830 1 chr7B.!!$F2 728
12 TraesCS6D01G057900 chr5B 203452485 203453301 816 False 1044.000000 1044 89.806000 1 818 1 chr5B.!!$F1 817
13 TraesCS6D01G057900 chr3B 749639811 749640620 809 False 944.000000 944 87.787000 1 818 1 chr3B.!!$F1 817
14 TraesCS6D01G057900 chr7A 604814425 604816211 1786 False 425.000000 523 82.715500 3728 4830 2 chr7A.!!$F1 1102
15 TraesCS6D01G057900 chr4A 703275989 703276624 635 True 213.000000 213 73.385000 189 821 1 chr4A.!!$R1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 1060 1.079543 CTTGAGGGTGGACTCGCTG 60.080 63.158 0.0 0.0 40.39 5.18 F
1182 1266 0.835941 AGGTGATGATGCTCAGTCCC 59.164 55.000 0.0 0.0 0.00 4.46 F
1845 2547 0.594110 TGGCAAAAATCGGACGTTCC 59.406 50.000 0.0 0.0 0.00 3.62 F
2776 3868 1.620822 AGGTTCCCTGCATGTTCAAC 58.379 50.000 0.0 0.0 29.57 3.18 F
3695 4912 0.963962 ATGGTGCTTGCTTGGTTGAG 59.036 50.000 0.0 0.0 0.00 3.02 F
4164 6016 1.024271 GACTCACACAAGGCAGCAAA 58.976 50.000 0.0 0.0 0.00 3.68 F
5457 7482 1.087771 CAAATGGCGACCCTCGTACC 61.088 60.000 0.0 0.0 42.81 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 2538 0.368907 CGCTACAAATGGAACGTCCG 59.631 55.000 0.00 0.00 40.17 4.79 R
2759 3851 1.234821 TCGTTGAACATGCAGGGAAC 58.765 50.000 2.31 1.76 0.00 3.62 R
2878 4029 1.696336 AGGCAGATCATATTGGCGTCT 59.304 47.619 0.00 0.00 43.85 4.18 R
4416 6411 2.996621 ACTATCTGCGAAAAGAGCACAC 59.003 45.455 0.00 0.00 40.01 3.82 R
5666 7693 0.107165 GGGATACAGGTCCTTGTGGC 60.107 60.000 0.00 0.00 38.38 5.01 R
5870 7903 2.009051 ACTGCAAAAGCAAAACAAGGC 58.991 42.857 0.00 0.00 0.00 4.35 R
7214 9574 0.676782 ATTGCCAGCTGGTACGTTCC 60.677 55.000 32.81 15.39 37.57 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 139 9.435688 AATACAATTTTTGGTTTGGATAGAAGC 57.564 29.630 0.00 0.00 34.12 3.86
713 769 1.226974 CGGACACATCTGGGCGTAG 60.227 63.158 0.00 0.00 0.00 3.51
794 850 2.385803 AGTAGCAATGTAGCCCGTAGT 58.614 47.619 0.00 0.00 34.23 2.73
818 874 2.283351 CGCACGGGCATTTTACTAGTAC 59.717 50.000 11.77 0.00 41.24 2.73
819 875 3.528532 GCACGGGCATTTTACTAGTACT 58.471 45.455 3.77 0.00 40.72 2.73
820 876 4.685924 GCACGGGCATTTTACTAGTACTA 58.314 43.478 3.77 1.89 40.72 1.82
821 877 4.505556 GCACGGGCATTTTACTAGTACTAC 59.494 45.833 3.77 0.00 40.72 2.73
825 881 7.279313 CACGGGCATTTTACTAGTACTACAAAT 59.721 37.037 0.91 3.45 0.00 2.32
879 939 2.874086 GGTAACGCGGCCTACAAATATT 59.126 45.455 12.47 0.00 0.00 1.28
880 940 3.059393 GGTAACGCGGCCTACAAATATTC 60.059 47.826 12.47 0.00 0.00 1.75
939 999 3.308046 GGGATTTCTGCCTCTCAACTCTT 60.308 47.826 0.00 0.00 0.00 2.85
948 1022 3.848726 CCTCTCAACTCTTTCTCTCAGC 58.151 50.000 0.00 0.00 0.00 4.26
951 1025 4.880759 TCTCAACTCTTTCTCTCAGCAAG 58.119 43.478 0.00 0.00 0.00 4.01
952 1026 4.343526 TCTCAACTCTTTCTCTCAGCAAGT 59.656 41.667 0.00 0.00 0.00 3.16
963 1037 5.164233 TCTCTCAGCAAGTTCGTATTCAAG 58.836 41.667 0.00 0.00 0.00 3.02
972 1046 3.008049 AGTTCGTATTCAAGCTTGAGGGT 59.992 43.478 27.02 19.31 38.61 4.34
973 1047 2.972625 TCGTATTCAAGCTTGAGGGTG 58.027 47.619 27.02 18.62 38.61 4.61
982 1060 1.079543 CTTGAGGGTGGACTCGCTG 60.080 63.158 0.00 0.00 40.39 5.18
984 1062 3.695606 GAGGGTGGACTCGCTGCA 61.696 66.667 0.00 0.00 0.00 4.41
1174 1258 3.584586 CCTCTCGAGGTGATGATGC 57.415 57.895 13.56 0.00 43.61 3.91
1175 1259 1.039068 CCTCTCGAGGTGATGATGCT 58.961 55.000 13.56 0.00 43.61 3.79
1176 1260 1.000385 CCTCTCGAGGTGATGATGCTC 60.000 57.143 13.56 0.00 43.61 4.26
1177 1261 1.680207 CTCTCGAGGTGATGATGCTCA 59.320 52.381 13.56 0.00 0.00 4.26
1179 1263 1.408340 CTCGAGGTGATGATGCTCAGT 59.592 52.381 3.91 0.00 0.00 3.41
1180 1264 1.406898 TCGAGGTGATGATGCTCAGTC 59.593 52.381 0.00 0.00 0.00 3.51
1182 1266 0.835941 AGGTGATGATGCTCAGTCCC 59.164 55.000 0.00 0.00 0.00 4.46
1259 1352 3.873952 GCTCGCTAGTCATGGAGAATTTT 59.126 43.478 0.00 0.00 0.00 1.82
1283 1376 3.267597 AATGGTTGTGCTTCGCGGC 62.268 57.895 6.13 2.62 0.00 6.53
1305 1398 0.996462 GATTCGTGGTCGCGATTGAA 59.004 50.000 14.06 14.37 40.76 2.69
1358 1816 1.781153 AATTTGGGGGTCGTCGGGAA 61.781 55.000 0.00 0.00 0.00 3.97
1359 1817 2.473891 ATTTGGGGGTCGTCGGGAAC 62.474 60.000 0.00 0.00 0.00 3.62
1360 1818 4.938074 TGGGGGTCGTCGGGAACA 62.938 66.667 0.00 0.00 32.36 3.18
1361 1819 4.078516 GGGGGTCGTCGGGAACAG 62.079 72.222 0.00 0.00 32.36 3.16
1362 1820 4.754667 GGGGTCGTCGGGAACAGC 62.755 72.222 0.00 0.00 32.36 4.40
1364 1822 3.998672 GGTCGTCGGGAACAGCCA 61.999 66.667 0.00 0.00 38.95 4.75
1365 1823 2.264794 GTCGTCGGGAACAGCCAT 59.735 61.111 0.00 0.00 38.95 4.40
1367 1825 2.885644 CGTCGGGAACAGCCATCG 60.886 66.667 0.00 0.00 38.95 3.84
1368 1826 2.511600 GTCGGGAACAGCCATCGG 60.512 66.667 0.00 0.00 38.95 4.18
1369 1827 3.000819 TCGGGAACAGCCATCGGT 61.001 61.111 0.00 0.00 38.95 4.69
1370 1828 2.046314 CGGGAACAGCCATCGGTT 60.046 61.111 0.00 0.00 38.95 4.44
1371 1829 2.106683 CGGGAACAGCCATCGGTTC 61.107 63.158 0.00 0.00 43.58 3.62
1394 1852 4.733542 ACGGGGATTTGGTGGGCG 62.734 66.667 0.00 0.00 0.00 6.13
1404 1862 4.681978 GGTGGGCGTTCGCTGTCT 62.682 66.667 16.40 0.00 0.00 3.41
1405 1863 3.414700 GTGGGCGTTCGCTGTCTG 61.415 66.667 16.40 0.00 0.00 3.51
1407 1865 4.681978 GGGCGTTCGCTGTCTGGT 62.682 66.667 16.40 0.00 0.00 4.00
1456 1914 9.206870 CATTTGTTTATTCTGGTAAATGTGCTT 57.793 29.630 0.00 0.00 33.28 3.91
1467 1925 0.870393 AATGTGCTTCGCTGTCACAG 59.130 50.000 0.00 0.00 42.98 3.66
1526 1988 7.271223 GCAAATTGCAATTATATATCGCTTCGT 59.729 33.333 24.35 1.37 44.26 3.85
1638 2177 6.359617 CGAGAGTTTATGTTTTCGTGCATTTT 59.640 34.615 0.00 0.00 0.00 1.82
1639 2178 7.408290 CGAGAGTTTATGTTTTCGTGCATTTTC 60.408 37.037 0.00 0.00 0.00 2.29
1642 2181 6.359617 AGTTTATGTTTTCGTGCATTTTCTCG 59.640 34.615 0.00 0.00 0.00 4.04
1659 2198 4.314440 GGCTGGTCTGCGTCCACA 62.314 66.667 0.00 0.00 0.00 4.17
1661 2200 1.891919 GCTGGTCTGCGTCCACAAA 60.892 57.895 0.00 0.00 0.00 2.83
1677 2376 3.426191 CCACAAAATTGCTCAATGTGACG 59.574 43.478 13.41 0.00 29.09 4.35
1678 2377 4.043750 CACAAAATTGCTCAATGTGACGT 58.956 39.130 8.39 0.00 29.09 4.34
1679 2378 4.043750 ACAAAATTGCTCAATGTGACGTG 58.956 39.130 0.00 0.00 0.00 4.49
1786 2485 3.531934 ATTTCCTTTAGCAAGCATGGC 57.468 42.857 0.00 0.00 32.57 4.40
1816 2518 6.206634 CCTTGCCTTCAGTTTGTAGTGAAATA 59.793 38.462 0.00 0.00 41.82 1.40
1819 2521 6.939730 TGCCTTCAGTTTGTAGTGAAATATGA 59.060 34.615 0.00 0.00 41.82 2.15
1833 2535 5.861251 GTGAAATATGACGTTGATGGCAAAA 59.139 36.000 0.00 0.00 35.42 2.44
1836 2538 7.275341 TGAAATATGACGTTGATGGCAAAAATC 59.725 33.333 0.00 0.00 35.42 2.17
1845 2547 0.594110 TGGCAAAAATCGGACGTTCC 59.406 50.000 0.00 0.00 0.00 3.62
1870 2572 7.908601 CCATTTGTAGCGAAATCCTACTTTTAC 59.091 37.037 0.00 0.00 36.86 2.01
2098 2823 2.482721 AGTGGTATTTTCAGTTTCCGCG 59.517 45.455 0.00 0.00 0.00 6.46
2118 2843 4.841441 TGGTTCCTCCATTGGTGC 57.159 55.556 1.86 0.00 41.93 5.01
2146 2871 6.016276 GCATATAATTTTGATGGACCGGTCTT 60.016 38.462 32.52 20.94 0.00 3.01
2201 2927 3.581024 TGATGCTGGAACATTTTCTGC 57.419 42.857 0.00 0.00 38.20 4.26
2210 2936 4.344679 TGGAACATTTTCTGCAAGTGGATT 59.655 37.500 0.00 0.00 33.76 3.01
2211 2937 5.163322 TGGAACATTTTCTGCAAGTGGATTT 60.163 36.000 0.00 0.00 33.76 2.17
2221 2947 2.415893 GCAAGTGGATTTGGAATGGTCG 60.416 50.000 0.00 0.00 0.00 4.79
2222 2948 2.819608 CAAGTGGATTTGGAATGGTCGT 59.180 45.455 0.00 0.00 0.00 4.34
2223 2949 2.711542 AGTGGATTTGGAATGGTCGTC 58.288 47.619 0.00 0.00 0.00 4.20
2224 2950 2.305927 AGTGGATTTGGAATGGTCGTCT 59.694 45.455 0.00 0.00 0.00 4.18
2225 2951 3.517901 AGTGGATTTGGAATGGTCGTCTA 59.482 43.478 0.00 0.00 0.00 2.59
2226 2952 4.019681 AGTGGATTTGGAATGGTCGTCTAA 60.020 41.667 0.00 0.00 0.00 2.10
2227 2953 4.881850 GTGGATTTGGAATGGTCGTCTAAT 59.118 41.667 0.00 0.00 0.00 1.73
2228 2954 6.053005 GTGGATTTGGAATGGTCGTCTAATA 58.947 40.000 0.00 0.00 0.00 0.98
2229 2955 6.202954 GTGGATTTGGAATGGTCGTCTAATAG 59.797 42.308 0.00 0.00 0.00 1.73
2230 2956 6.099125 TGGATTTGGAATGGTCGTCTAATAGA 59.901 38.462 0.00 0.00 0.00 1.98
2231 2957 6.424207 GGATTTGGAATGGTCGTCTAATAGAC 59.576 42.308 10.26 10.26 41.71 2.59
2232 2958 6.540438 TTTGGAATGGTCGTCTAATAGACT 57.460 37.500 17.23 0.00 42.92 3.24
2233 2959 7.649533 TTTGGAATGGTCGTCTAATAGACTA 57.350 36.000 17.23 4.77 42.92 2.59
2234 2960 7.649533 TTGGAATGGTCGTCTAATAGACTAA 57.350 36.000 17.23 3.93 42.92 2.24
2235 2961 7.834881 TGGAATGGTCGTCTAATAGACTAAT 57.165 36.000 17.23 4.12 42.92 1.73
2236 2962 8.929260 TGGAATGGTCGTCTAATAGACTAATA 57.071 34.615 17.23 3.44 42.92 0.98
2237 2963 8.790718 TGGAATGGTCGTCTAATAGACTAATAC 58.209 37.037 17.23 10.07 42.92 1.89
2238 2964 9.012161 GGAATGGTCGTCTAATAGACTAATACT 57.988 37.037 17.23 0.00 42.92 2.12
2240 2966 7.976135 TGGTCGTCTAATAGACTAATACTCC 57.024 40.000 17.23 5.48 42.92 3.85
2241 2967 6.939163 TGGTCGTCTAATAGACTAATACTCCC 59.061 42.308 17.23 4.87 42.92 4.30
2242 2968 7.167535 GGTCGTCTAATAGACTAATACTCCCT 58.832 42.308 17.23 0.00 42.92 4.20
2243 2969 7.334171 GGTCGTCTAATAGACTAATACTCCCTC 59.666 44.444 17.23 0.00 42.92 4.30
2244 2970 7.334171 GTCGTCTAATAGACTAATACTCCCTCC 59.666 44.444 17.23 0.00 42.92 4.30
2245 2971 6.313411 CGTCTAATAGACTAATACTCCCTCCG 59.687 46.154 17.23 0.00 42.92 4.63
2246 2972 7.167535 GTCTAATAGACTAATACTCCCTCCGT 58.832 42.308 12.85 0.00 41.88 4.69
2247 2973 7.665145 GTCTAATAGACTAATACTCCCTCCGTT 59.335 40.741 12.85 0.00 41.88 4.44
2248 2974 6.897706 AATAGACTAATACTCCCTCCGTTC 57.102 41.667 0.00 0.00 0.00 3.95
2249 2975 3.564264 AGACTAATACTCCCTCCGTTCC 58.436 50.000 0.00 0.00 0.00 3.62
2250 2976 3.204831 AGACTAATACTCCCTCCGTTCCT 59.795 47.826 0.00 0.00 0.00 3.36
2251 2977 4.414846 AGACTAATACTCCCTCCGTTCCTA 59.585 45.833 0.00 0.00 0.00 2.94
2252 2978 5.103771 AGACTAATACTCCCTCCGTTCCTAA 60.104 44.000 0.00 0.00 0.00 2.69
2253 2979 5.522641 ACTAATACTCCCTCCGTTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
2254 2980 6.141790 ACTAATACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
2255 2981 7.300658 ACTAATACTCCCTCCGTTCCTAAATA 58.699 38.462 0.00 0.00 0.00 1.40
2256 2982 7.954620 ACTAATACTCCCTCCGTTCCTAAATAT 59.045 37.037 0.00 0.00 0.00 1.28
2257 2983 9.471702 CTAATACTCCCTCCGTTCCTAAATATA 57.528 37.037 0.00 0.00 0.00 0.86
2258 2984 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
2259 2985 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2260 2986 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2261 2987 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2262 2988 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2263 2989 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2264 2990 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2265 2991 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
2266 2992 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
2283 3009 8.558973 AGTCTTTCTAGAGATTCCAACAAATG 57.441 34.615 0.00 0.00 0.00 2.32
2284 3010 8.378565 AGTCTTTCTAGAGATTCCAACAAATGA 58.621 33.333 0.00 0.00 0.00 2.57
2285 3011 8.447053 GTCTTTCTAGAGATTCCAACAAATGAC 58.553 37.037 0.00 0.00 0.00 3.06
2286 3012 8.378565 TCTTTCTAGAGATTCCAACAAATGACT 58.621 33.333 0.00 0.00 0.00 3.41
2287 3013 9.658799 CTTTCTAGAGATTCCAACAAATGACTA 57.341 33.333 0.00 0.00 0.00 2.59
2288 3014 9.436957 TTTCTAGAGATTCCAACAAATGACTAC 57.563 33.333 0.00 0.00 0.00 2.73
2289 3015 8.134202 TCTAGAGATTCCAACAAATGACTACA 57.866 34.615 0.00 0.00 0.00 2.74
2290 3016 8.762645 TCTAGAGATTCCAACAAATGACTACAT 58.237 33.333 0.00 0.00 38.50 2.29
2292 3018 8.723942 AGAGATTCCAACAAATGACTACATAC 57.276 34.615 0.00 0.00 35.50 2.39
2293 3019 7.492669 AGAGATTCCAACAAATGACTACATACG 59.507 37.037 0.00 0.00 35.50 3.06
2294 3020 6.538742 AGATTCCAACAAATGACTACATACGG 59.461 38.462 0.00 0.00 35.50 4.02
2295 3021 5.408880 TCCAACAAATGACTACATACGGA 57.591 39.130 0.00 0.00 35.50 4.69
2296 3022 5.416083 TCCAACAAATGACTACATACGGAG 58.584 41.667 0.00 0.00 35.50 4.63
2297 3023 4.034048 CCAACAAATGACTACATACGGAGC 59.966 45.833 0.00 0.00 35.50 4.70
2298 3024 4.465632 ACAAATGACTACATACGGAGCA 57.534 40.909 0.00 0.00 35.50 4.26
2299 3025 4.827692 ACAAATGACTACATACGGAGCAA 58.172 39.130 0.00 0.00 35.50 3.91
2300 3026 5.242434 ACAAATGACTACATACGGAGCAAA 58.758 37.500 0.00 0.00 35.50 3.68
2301 3027 5.703592 ACAAATGACTACATACGGAGCAAAA 59.296 36.000 0.00 0.00 35.50 2.44
2302 3028 6.374333 ACAAATGACTACATACGGAGCAAAAT 59.626 34.615 0.00 0.00 35.50 1.82
2303 3029 5.991328 ATGACTACATACGGAGCAAAATG 57.009 39.130 0.00 0.00 34.71 2.32
2304 3030 5.079689 TGACTACATACGGAGCAAAATGA 57.920 39.130 0.00 0.00 0.00 2.57
2305 3031 5.109210 TGACTACATACGGAGCAAAATGAG 58.891 41.667 0.00 0.00 0.00 2.90
2306 3032 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2307 3033 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2308 3034 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2309 3035 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2310 3036 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2311 3037 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2312 3038 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2313 3039 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2314 3040 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2315 3041 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2316 3042 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2340 3066 9.477484 CACTCTAAAATATGTCTACATACACCC 57.523 37.037 4.98 0.00 41.15 4.61
2341 3067 8.358148 ACTCTAAAATATGTCTACATACACCCG 58.642 37.037 4.98 0.00 41.15 5.28
2342 3068 8.241497 TCTAAAATATGTCTACATACACCCGT 57.759 34.615 4.98 0.00 41.15 5.28
2343 3069 9.353431 TCTAAAATATGTCTACATACACCCGTA 57.647 33.333 4.98 0.00 41.15 4.02
2354 3080 4.365723 CATACACCCGTATGTTGTAGTCC 58.634 47.826 4.75 0.00 46.70 3.85
2355 3081 2.250031 ACACCCGTATGTTGTAGTCCA 58.750 47.619 0.00 0.00 0.00 4.02
2356 3082 2.835764 ACACCCGTATGTTGTAGTCCAT 59.164 45.455 0.00 0.00 0.00 3.41
2357 3083 3.262405 ACACCCGTATGTTGTAGTCCATT 59.738 43.478 0.00 0.00 0.00 3.16
2358 3084 4.258543 CACCCGTATGTTGTAGTCCATTT 58.741 43.478 0.00 0.00 0.00 2.32
2359 3085 4.094294 CACCCGTATGTTGTAGTCCATTTG 59.906 45.833 0.00 0.00 0.00 2.32
2360 3086 4.020039 ACCCGTATGTTGTAGTCCATTTGA 60.020 41.667 0.00 0.00 0.00 2.69
2361 3087 4.938832 CCCGTATGTTGTAGTCCATTTGAA 59.061 41.667 0.00 0.00 0.00 2.69
2362 3088 5.413213 CCCGTATGTTGTAGTCCATTTGAAA 59.587 40.000 0.00 0.00 0.00 2.69
2363 3089 6.094881 CCCGTATGTTGTAGTCCATTTGAAAT 59.905 38.462 0.00 0.00 0.00 2.17
2364 3090 6.966632 CCGTATGTTGTAGTCCATTTGAAATG 59.033 38.462 10.84 10.84 0.00 2.32
2365 3091 7.361713 CCGTATGTTGTAGTCCATTTGAAATGT 60.362 37.037 15.93 1.43 0.00 2.71
2366 3092 7.692291 CGTATGTTGTAGTCCATTTGAAATGTC 59.308 37.037 15.93 9.10 0.00 3.06
2367 3093 7.765695 ATGTTGTAGTCCATTTGAAATGTCT 57.234 32.000 15.93 14.81 0.00 3.41
2368 3094 8.862325 ATGTTGTAGTCCATTTGAAATGTCTA 57.138 30.769 15.93 13.97 0.00 2.59
2369 3095 8.684386 TGTTGTAGTCCATTTGAAATGTCTAA 57.316 30.769 15.93 4.89 0.00 2.10
2370 3096 9.126151 TGTTGTAGTCCATTTGAAATGTCTAAA 57.874 29.630 15.93 10.39 0.00 1.85
2371 3097 9.959749 GTTGTAGTCCATTTGAAATGTCTAAAA 57.040 29.630 15.93 14.59 0.00 1.52
2395 3121 9.788889 AAAATACTTATATTTAGGAACGGAGGG 57.211 33.333 0.00 0.00 39.61 4.30
2396 3122 8.731591 AATACTTATATTTAGGAACGGAGGGA 57.268 34.615 0.00 0.00 0.00 4.20
2397 3123 6.667558 ACTTATATTTAGGAACGGAGGGAG 57.332 41.667 0.00 0.00 0.00 4.30
2523 3249 3.246936 ACGAACTTTGCGTCCTTTACTTC 59.753 43.478 0.00 0.00 37.42 3.01
2660 3751 7.806409 TTCGGTGTCATGATTTATGATGATT 57.194 32.000 0.00 0.00 46.85 2.57
2661 3752 7.806409 TCGGTGTCATGATTTATGATGATTT 57.194 32.000 0.00 0.00 46.85 2.17
2663 3754 7.498570 TCGGTGTCATGATTTATGATGATTTGA 59.501 33.333 0.00 0.00 46.85 2.69
2664 3755 7.588854 CGGTGTCATGATTTATGATGATTTGAC 59.411 37.037 0.00 0.00 46.85 3.18
2665 3756 8.407832 GGTGTCATGATTTATGATGATTTGACA 58.592 33.333 0.00 0.00 46.85 3.58
2666 3757 9.791820 GTGTCATGATTTATGATGATTTGACAA 57.208 29.630 0.00 0.00 46.85 3.18
2764 3856 9.770097 GTTAGGTGTTTATTATAGTAGGTTCCC 57.230 37.037 0.00 0.00 0.00 3.97
2776 3868 1.620822 AGGTTCCCTGCATGTTCAAC 58.379 50.000 0.00 0.00 29.57 3.18
2871 4022 6.426328 GCATGCTAATATGTTCTCAACTAGCT 59.574 38.462 11.37 0.00 33.83 3.32
2872 4023 7.041508 GCATGCTAATATGTTCTCAACTAGCTT 60.042 37.037 11.37 0.00 33.83 3.74
2883 4034 6.542574 TCTCAACTAGCTTATAGTAGACGC 57.457 41.667 0.00 0.00 0.00 5.19
3003 4155 5.350640 GGTAAAACTACCATCCAGTTCTTCG 59.649 44.000 0.00 0.00 39.85 3.79
3005 4157 4.884668 AACTACCATCCAGTTCTTCGAA 57.115 40.909 0.00 0.00 30.36 3.71
3013 4165 3.738982 TCCAGTTCTTCGAAGCATTTCA 58.261 40.909 20.56 0.00 32.67 2.69
3016 4177 5.937540 TCCAGTTCTTCGAAGCATTTCAATA 59.062 36.000 20.56 0.00 32.67 1.90
3018 4179 6.909357 CCAGTTCTTCGAAGCATTTCAATATC 59.091 38.462 20.56 0.00 32.67 1.63
3019 4180 6.909357 CAGTTCTTCGAAGCATTTCAATATCC 59.091 38.462 20.56 0.00 32.67 2.59
3023 4184 8.087982 TCTTCGAAGCATTTCAATATCCATAC 57.912 34.615 20.56 0.00 32.67 2.39
3024 4185 6.801539 TCGAAGCATTTCAATATCCATACC 57.198 37.500 0.00 0.00 32.67 2.73
3026 4187 6.650807 TCGAAGCATTTCAATATCCATACCTC 59.349 38.462 0.00 0.00 32.67 3.85
3109 4274 3.616956 TGGAACTGAAGTAGATGCTGG 57.383 47.619 0.00 0.00 0.00 4.85
3216 4385 6.373779 CAGATTTGTGTTTCTGTATCCACAC 58.626 40.000 0.00 0.00 37.53 3.82
3231 4400 3.811083 TCCACACGTCATTTGTTTACCT 58.189 40.909 0.00 0.00 0.00 3.08
3328 4497 6.095377 GGCATTGATTCTCCTTGTAGTTTTG 58.905 40.000 0.00 0.00 0.00 2.44
3332 4501 6.861065 TGATTCTCCTTGTAGTTTTGTGAC 57.139 37.500 0.00 0.00 0.00 3.67
3563 4744 8.862325 ATCTGTTTGTACACCAAAGATCATTA 57.138 30.769 0.00 0.00 43.52 1.90
3665 4876 4.630894 TCCTTTTACAGCAAAGTGTGTG 57.369 40.909 0.00 0.00 32.61 3.82
3694 4911 2.284754 TATGGTGCTTGCTTGGTTGA 57.715 45.000 0.00 0.00 0.00 3.18
3695 4912 0.963962 ATGGTGCTTGCTTGGTTGAG 59.036 50.000 0.00 0.00 0.00 3.02
4042 5265 3.039011 AGTGAAGGTATATTCGGTGCCT 58.961 45.455 0.00 0.00 31.52 4.75
4055 5278 5.461032 TTCGGTGCCTTTAATTCATGTTT 57.539 34.783 0.00 0.00 0.00 2.83
4164 6016 1.024271 GACTCACACAAGGCAGCAAA 58.976 50.000 0.00 0.00 0.00 3.68
4416 6411 4.821805 ACTCCTGATATTTATTTGCACCCG 59.178 41.667 0.00 0.00 0.00 5.28
4418 6413 4.578516 TCCTGATATTTATTTGCACCCGTG 59.421 41.667 0.00 0.00 0.00 4.94
4429 6424 1.569493 CACCCGTGTGCTCTTTTCG 59.431 57.895 0.00 0.00 35.31 3.46
4460 6455 3.569701 CACAAAGTTCAACCATAGCCTGT 59.430 43.478 0.00 0.00 0.00 4.00
4567 6562 4.321718 CAGTTGAGATGACATTCCACTGT 58.678 43.478 15.78 0.00 34.28 3.55
4642 6639 2.676342 GGTAGTCGTAAGGTGGCAAATG 59.324 50.000 0.00 0.00 38.47 2.32
4737 6734 5.180117 GTGCTGTTGCCATTCCTATATGTAG 59.820 44.000 0.00 0.00 38.71 2.74
4823 6821 1.276421 ACAGTAGCAGGGCAAGTACAG 59.724 52.381 0.00 0.00 0.00 2.74
4886 6884 6.806739 GCAAGTGTGTAATTCAAGGTTAATCC 59.193 38.462 0.00 0.00 0.00 3.01
5006 7020 4.018688 GGTAGGTTGGGTGAGGAAGTATTT 60.019 45.833 0.00 0.00 0.00 1.40
5018 7032 7.154656 GTGAGGAAGTATTTTGGCATCTTTTT 58.845 34.615 0.00 0.00 0.00 1.94
5081 7095 2.254152 ATAGGGCTCTCCAGACAACA 57.746 50.000 0.00 0.00 38.24 3.33
5136 7150 3.652274 GCTGGAGCAAATTTTTACAGCA 58.348 40.909 22.90 0.00 46.51 4.41
5138 7152 4.151157 GCTGGAGCAAATTTTTACAGCAAG 59.849 41.667 22.90 9.60 46.51 4.01
5262 7276 5.690865 AAAGGACAGTTGTTCTTGGATACA 58.309 37.500 6.57 0.00 42.80 2.29
5457 7482 1.087771 CAAATGGCGACCCTCGTACC 61.088 60.000 0.00 0.00 42.81 3.34
5666 7693 1.415659 TGGGGTTTTGGTGCAAAGATG 59.584 47.619 0.00 0.00 34.72 2.90
5687 7714 1.846439 CCACAAGGACCTGTATCCCAT 59.154 52.381 0.00 0.00 39.91 4.00
5707 7734 5.470777 CCCATTGTTTCAACTTGAATGCAAT 59.529 36.000 19.04 19.04 40.01 3.56
5737 7764 2.570752 ACTGTGAGGTGAGATTCATGCT 59.429 45.455 0.00 0.00 0.00 3.79
5799 7826 6.368791 TGACAATGGACGATACTGAAAAGAAG 59.631 38.462 0.00 0.00 0.00 2.85
5860 7893 3.207265 TGACTTTTTGAGCTACCAGCA 57.793 42.857 0.38 0.00 45.56 4.41
5870 7903 2.417933 GAGCTACCAGCATTGTCTGTTG 59.582 50.000 0.38 0.00 45.56 3.33
5908 7944 5.484715 TGCAGTAGTATTAACTGGACAACC 58.515 41.667 5.47 0.00 43.71 3.77
5922 7958 2.543653 GGACAACCAATGCTTCACACAC 60.544 50.000 0.00 0.00 35.97 3.82
5923 7959 2.098614 ACAACCAATGCTTCACACACA 58.901 42.857 0.00 0.00 0.00 3.72
5924 7960 2.694628 ACAACCAATGCTTCACACACAT 59.305 40.909 0.00 0.00 0.00 3.21
5925 7961 3.132646 ACAACCAATGCTTCACACACATT 59.867 39.130 0.00 0.00 34.42 2.71
5926 7962 4.121317 CAACCAATGCTTCACACACATTT 58.879 39.130 0.00 0.00 31.82 2.32
5929 7965 5.713025 ACCAATGCTTCACACACATTTATC 58.287 37.500 0.00 0.00 31.82 1.75
5930 7966 4.794762 CCAATGCTTCACACACATTTATCG 59.205 41.667 0.00 0.00 31.82 2.92
5933 7969 5.681337 TGCTTCACACACATTTATCGAAA 57.319 34.783 0.00 0.00 0.00 3.46
5934 7970 6.066054 TGCTTCACACACATTTATCGAAAA 57.934 33.333 0.00 0.00 0.00 2.29
5938 7974 7.801315 GCTTCACACACATTTATCGAAAACTAA 59.199 33.333 0.00 0.00 0.00 2.24
5965 8001 9.844257 AATTTTCAAATCTTTTAATGGTCACCA 57.156 25.926 0.00 0.00 38.19 4.17
5966 8002 9.844257 ATTTTCAAATCTTTTAATGGTCACCAA 57.156 25.926 0.00 0.00 36.95 3.67
5967 8003 9.844257 TTTTCAAATCTTTTAATGGTCACCAAT 57.156 25.926 0.00 0.00 36.95 3.16
5968 8004 8.830201 TTCAAATCTTTTAATGGTCACCAATG 57.170 30.769 0.00 0.00 36.95 2.82
5969 8005 7.961351 TCAAATCTTTTAATGGTCACCAATGT 58.039 30.769 0.00 0.00 36.95 2.71
5971 8007 7.537596 AATCTTTTAATGGTCACCAATGTCA 57.462 32.000 0.00 0.00 36.95 3.58
5973 8009 6.923012 TCTTTTAATGGTCACCAATGTCATG 58.077 36.000 0.00 0.00 36.95 3.07
5974 8010 6.718912 TCTTTTAATGGTCACCAATGTCATGA 59.281 34.615 0.00 0.00 36.95 3.07
5975 8011 6.907853 TTTAATGGTCACCAATGTCATGAA 57.092 33.333 0.00 0.00 36.95 2.57
5976 8012 6.907853 TTAATGGTCACCAATGTCATGAAA 57.092 33.333 0.00 0.00 36.95 2.69
5977 8013 5.804944 AATGGTCACCAATGTCATGAAAA 57.195 34.783 0.00 0.00 36.95 2.29
5979 8015 5.389859 TGGTCACCAATGTCATGAAAATC 57.610 39.130 0.00 0.00 0.00 2.17
5980 8016 5.078949 TGGTCACCAATGTCATGAAAATCT 58.921 37.500 0.00 0.00 0.00 2.40
5982 8018 5.183713 GGTCACCAATGTCATGAAAATCTCA 59.816 40.000 0.00 0.00 38.81 3.27
5996 8032 7.528996 TGAAAATCTCATGAATCCAACAACT 57.471 32.000 0.00 0.00 0.00 3.16
5997 8033 8.634335 TGAAAATCTCATGAATCCAACAACTA 57.366 30.769 0.00 0.00 0.00 2.24
5998 8034 9.076781 TGAAAATCTCATGAATCCAACAACTAA 57.923 29.630 0.00 0.00 0.00 2.24
6001 8037 6.441093 TCTCATGAATCCAACAACTAATGC 57.559 37.500 0.00 0.00 0.00 3.56
6002 8038 6.182627 TCTCATGAATCCAACAACTAATGCT 58.817 36.000 0.00 0.00 0.00 3.79
6004 8040 6.855836 TCATGAATCCAACAACTAATGCTTC 58.144 36.000 0.00 0.00 0.00 3.86
6005 8041 6.433716 TCATGAATCCAACAACTAATGCTTCA 59.566 34.615 0.00 0.00 0.00 3.02
6006 8042 6.012658 TGAATCCAACAACTAATGCTTCAC 57.987 37.500 0.00 0.00 0.00 3.18
6007 8043 5.534278 TGAATCCAACAACTAATGCTTCACA 59.466 36.000 0.00 0.00 0.00 3.58
6008 8044 4.829064 TCCAACAACTAATGCTTCACAC 57.171 40.909 0.00 0.00 0.00 3.82
6009 8045 4.203226 TCCAACAACTAATGCTTCACACA 58.797 39.130 0.00 0.00 0.00 3.72
6010 8046 4.036262 TCCAACAACTAATGCTTCACACAC 59.964 41.667 0.00 0.00 0.00 3.82
6011 8047 4.202000 CCAACAACTAATGCTTCACACACA 60.202 41.667 0.00 0.00 0.00 3.72
6012 8048 5.339177 CAACAACTAATGCTTCACACACAA 58.661 37.500 0.00 0.00 0.00 3.33
6019 8076 2.431454 TGCTTCACACACAACTGTTGA 58.569 42.857 26.00 0.22 0.00 3.18
6027 8084 3.378112 ACACACAACTGTTGAACTCATGG 59.622 43.478 26.00 9.56 0.00 3.66
6093 8150 4.410555 ACCCTGTCTCATCCTCCTTAATTC 59.589 45.833 0.00 0.00 0.00 2.17
6373 8433 3.081804 GTTCCTATCACAGGTTGTTGGG 58.918 50.000 0.00 0.00 45.71 4.12
6535 8595 2.738846 CCTGCTCATTATCACGGTATGC 59.261 50.000 0.00 0.00 0.00 3.14
6561 8633 9.293404 CAATCATTAATATCCTCATGTGACCTT 57.707 33.333 0.00 0.00 0.00 3.50
6604 8679 3.624861 GCACTGTATATATGCAGGATGGC 59.375 47.826 27.79 21.67 43.59 4.40
6706 8781 2.353889 CGGGAATGCTGATTTCACTCAG 59.646 50.000 0.00 0.00 44.51 3.35
6758 8833 5.822519 TGATAAATCTTTCATCCCCTGAACG 59.177 40.000 0.00 0.00 43.54 3.95
7214 9574 4.363990 ACACGAGCTGGTCTGCGG 62.364 66.667 0.00 0.00 38.13 5.69
7263 9631 0.170116 GCCGTCTCTCTGTCTGACTG 59.830 60.000 9.51 8.83 0.00 3.51
7267 9635 3.591023 CGTCTCTCTGTCTGACTGACTA 58.409 50.000 12.62 4.56 45.54 2.59
7268 9636 3.997681 CGTCTCTCTGTCTGACTGACTAA 59.002 47.826 12.62 2.47 45.54 2.24
7270 9638 5.001232 GTCTCTCTGTCTGACTGACTAACT 58.999 45.833 12.62 0.00 45.54 2.24
7271 9639 5.121768 GTCTCTCTGTCTGACTGACTAACTC 59.878 48.000 12.62 0.57 45.54 3.01
7272 9640 5.012664 TCTCTCTGTCTGACTGACTAACTCT 59.987 44.000 12.62 0.00 45.54 3.24
7273 9641 5.242434 TCTCTGTCTGACTGACTAACTCTC 58.758 45.833 12.62 0.00 45.54 3.20
7274 9642 3.997681 TCTGTCTGACTGACTAACTCTCG 59.002 47.826 12.62 0.00 45.54 4.04
7275 9643 3.741249 TGTCTGACTGACTAACTCTCGT 58.259 45.455 9.51 0.00 45.54 4.18
7276 9644 3.747010 TGTCTGACTGACTAACTCTCGTC 59.253 47.826 9.51 0.00 45.54 4.20
7277 9645 2.994578 TCTGACTGACTAACTCTCGTCG 59.005 50.000 0.00 0.00 32.93 5.12
7278 9646 2.737783 CTGACTGACTAACTCTCGTCGT 59.262 50.000 0.00 0.00 32.93 4.34
7279 9647 3.917988 TGACTGACTAACTCTCGTCGTA 58.082 45.455 0.00 0.00 32.93 3.43
7282 9650 2.665537 CTGACTAACTCTCGTCGTACGT 59.334 50.000 16.05 0.00 43.14 3.57
7332 9704 4.566987 ACTGAACCCTGTCGATAACTTTC 58.433 43.478 0.00 0.00 0.00 2.62
7338 9710 2.027561 CCTGTCGATAACTTTCCCACCA 60.028 50.000 0.00 0.00 0.00 4.17
7410 9799 4.776795 TGCGTATTACTCACTGAACTGA 57.223 40.909 0.00 0.00 0.00 3.41
7418 9816 3.529533 ACTCACTGAACTGATGCTATGC 58.470 45.455 0.00 0.00 0.00 3.14
7481 9880 2.813754 CGACCCATCTTGTCATTGTGTT 59.186 45.455 0.00 0.00 32.91 3.32
7519 9923 3.786516 TCGTTGTTATCGTCTATGGCA 57.213 42.857 0.00 0.00 0.00 4.92
7575 9989 1.079750 GCTGGAGACGGTGAAGGAC 60.080 63.158 0.00 0.00 39.64 3.85
7605 10019 2.549754 CGGATGGCTTGGTATCACATTC 59.450 50.000 0.00 0.00 0.00 2.67
7614 10028 5.391523 GCTTGGTATCACATTCGTTAAGCAA 60.392 40.000 0.00 0.00 38.23 3.91
7635 10057 5.874810 GCAAAGACATAATGTAGTCCTGTGA 59.125 40.000 0.00 0.00 35.38 3.58
7653 10075 5.454187 CCTGTGAAATAAATAGGCGGGACTA 60.454 44.000 0.00 0.00 0.00 2.59
7681 10103 7.921786 TTAGTCAATTCAGTCAAGTAATGGG 57.078 36.000 0.00 0.00 0.00 4.00
7682 10104 4.702131 AGTCAATTCAGTCAAGTAATGGGC 59.298 41.667 0.00 0.00 0.00 5.36
7683 10105 4.458989 GTCAATTCAGTCAAGTAATGGGCA 59.541 41.667 0.00 0.00 0.00 5.36
7684 10106 5.126061 GTCAATTCAGTCAAGTAATGGGCAT 59.874 40.000 0.00 0.00 0.00 4.40
7685 10107 5.716228 TCAATTCAGTCAAGTAATGGGCATT 59.284 36.000 0.00 0.00 34.93 3.56
7686 10108 5.587388 ATTCAGTCAAGTAATGGGCATTG 57.413 39.130 0.00 0.00 32.50 2.82
7687 10109 4.299586 TCAGTCAAGTAATGGGCATTGA 57.700 40.909 0.00 0.00 32.50 2.57
7688 10110 4.858850 TCAGTCAAGTAATGGGCATTGAT 58.141 39.130 0.00 0.00 34.45 2.57
7689 10111 4.883585 TCAGTCAAGTAATGGGCATTGATC 59.116 41.667 0.00 0.00 34.45 2.92
7690 10112 3.879295 AGTCAAGTAATGGGCATTGATCG 59.121 43.478 0.00 0.00 34.45 3.69
7691 10113 2.618241 TCAAGTAATGGGCATTGATCGC 59.382 45.455 0.00 0.00 32.50 4.58
7703 10125 0.530650 TTGATCGCGCTGGAAGATCC 60.531 55.000 16.36 3.43 39.84 3.36
7792 10216 7.399634 TCTCTTTCGGTTTTAAATGACCCTAT 58.600 34.615 3.91 0.00 32.14 2.57
7793 10217 7.886446 TCTCTTTCGGTTTTAAATGACCCTATT 59.114 33.333 3.91 0.00 32.14 1.73
7794 10218 8.411991 TCTTTCGGTTTTAAATGACCCTATTT 57.588 30.769 3.91 0.00 34.78 1.40
7795 10219 8.301002 TCTTTCGGTTTTAAATGACCCTATTTG 58.699 33.333 3.91 0.00 32.79 2.32
7796 10220 7.762588 TTCGGTTTTAAATGACCCTATTTGA 57.237 32.000 3.91 0.00 32.79 2.69
7797 10221 7.148355 TCGGTTTTAAATGACCCTATTTGAC 57.852 36.000 3.91 0.00 32.79 3.18
7798 10222 6.151480 TCGGTTTTAAATGACCCTATTTGACC 59.849 38.462 3.91 0.00 32.79 4.02
7799 10223 6.152154 CGGTTTTAAATGACCCTATTTGACCT 59.848 38.462 3.91 0.00 32.58 3.85
7800 10224 7.337436 CGGTTTTAAATGACCCTATTTGACCTA 59.663 37.037 3.91 0.00 32.58 3.08
7966 10390 7.202526 CCAAACTTTACACATGGCCATTATAG 58.797 38.462 17.92 12.97 0.00 1.31
8027 10459 1.833630 CACTTGGATCACCTGGCTCTA 59.166 52.381 0.00 0.00 37.04 2.43
8030 10462 1.204146 TGGATCACCTGGCTCTAACC 58.796 55.000 0.00 0.00 37.04 2.85
8035 10467 1.351017 TCACCTGGCTCTAACCCAAAG 59.649 52.381 0.00 0.00 30.66 2.77
8075 10507 1.578206 GGACAGCCAAGCGACCTTTC 61.578 60.000 0.00 0.00 0.00 2.62
8077 10509 0.179018 ACAGCCAAGCGACCTTTCTT 60.179 50.000 0.00 0.00 0.00 2.52
8078 10510 0.519077 CAGCCAAGCGACCTTTCTTC 59.481 55.000 0.00 0.00 0.00 2.87
8079 10511 0.951040 AGCCAAGCGACCTTTCTTCG 60.951 55.000 0.00 0.00 39.56 3.79
8098 10531 6.751157 TCTTCGGTGTCTTTCTGTGTTTATA 58.249 36.000 0.00 0.00 0.00 0.98
8111 10544 3.000727 GTGTTTATACTCGGCTTGCACT 58.999 45.455 0.00 0.00 0.00 4.40
8121 10554 0.322008 GGCTTGCACTGGTAGAAGCT 60.322 55.000 0.00 0.00 40.57 3.74
8130 10563 3.256879 CACTGGTAGAAGCTGAGTCTTCA 59.743 47.826 15.43 3.49 43.64 3.02
8135 10568 5.702670 TGGTAGAAGCTGAGTCTTCAAATTG 59.297 40.000 15.43 0.00 43.64 2.32
8136 10569 5.123027 GGTAGAAGCTGAGTCTTCAAATTGG 59.877 44.000 15.43 0.00 43.64 3.16
8137 10570 4.077822 AGAAGCTGAGTCTTCAAATTGGG 58.922 43.478 15.43 0.00 43.64 4.12
8138 10571 2.165998 AGCTGAGTCTTCAAATTGGGC 58.834 47.619 0.00 0.00 31.69 5.36
8139 10572 1.135575 GCTGAGTCTTCAAATTGGGCG 60.136 52.381 0.00 0.00 31.69 6.13
8140 10573 0.881118 TGAGTCTTCAAATTGGGCGC 59.119 50.000 0.00 0.00 0.00 6.53
8141 10574 0.171231 GAGTCTTCAAATTGGGCGCC 59.829 55.000 21.18 21.18 0.00 6.53
8164 10597 1.021390 CGGCTTCTACCAGTGCAAGG 61.021 60.000 4.95 4.95 0.00 3.61
8165 10598 1.308783 GGCTTCTACCAGTGCAAGGC 61.309 60.000 6.37 0.00 34.67 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 139 4.472286 AGAAAACAACCGATGCATTTACG 58.528 39.130 0.00 0.00 0.00 3.18
763 819 6.094881 GGCTACATTGCTACTAAATGAACCAA 59.905 38.462 3.32 0.00 38.21 3.67
764 820 5.588648 GGCTACATTGCTACTAAATGAACCA 59.411 40.000 3.32 0.00 38.21 3.67
765 821 5.008712 GGGCTACATTGCTACTAAATGAACC 59.991 44.000 3.32 2.02 38.21 3.62
794 850 1.810959 AGTAAAATGCCCGTGCGTTA 58.189 45.000 0.00 0.00 45.88 3.18
818 874 5.459110 TTAAGAAGCCGCGTTATTTGTAG 57.541 39.130 4.92 0.00 0.00 2.74
819 875 5.859521 TTTAAGAAGCCGCGTTATTTGTA 57.140 34.783 4.92 0.00 0.00 2.41
820 876 4.752661 TTTAAGAAGCCGCGTTATTTGT 57.247 36.364 4.92 0.00 0.00 2.83
857 917 0.745486 ATTTGTAGGCCGCGTTACCC 60.745 55.000 4.92 0.00 0.00 3.69
907 967 0.255318 CAGAAATCCCCTGCTCTGCT 59.745 55.000 0.00 0.00 0.00 4.24
908 968 2.791170 CAGAAATCCCCTGCTCTGC 58.209 57.895 0.00 0.00 0.00 4.26
939 999 5.134202 TGAATACGAACTTGCTGAGAGAA 57.866 39.130 0.00 0.00 0.00 2.87
948 1022 4.142816 CCCTCAAGCTTGAATACGAACTTG 60.143 45.833 28.16 13.21 36.64 3.16
951 1025 3.125316 CACCCTCAAGCTTGAATACGAAC 59.875 47.826 28.16 0.00 36.64 3.95
952 1026 3.334691 CACCCTCAAGCTTGAATACGAA 58.665 45.455 28.16 6.11 36.64 3.85
963 1037 2.435059 GCGAGTCCACCCTCAAGC 60.435 66.667 0.00 0.00 0.00 4.01
982 1060 1.000385 CATCCCTGATCTCGACTCTGC 60.000 57.143 0.00 0.00 0.00 4.26
984 1062 1.480312 CCCATCCCTGATCTCGACTCT 60.480 57.143 0.00 0.00 0.00 3.24
1171 1255 1.383803 GGAGGAGGGGACTGAGCAT 60.384 63.158 0.00 0.00 44.43 3.79
1173 1257 2.039624 TGGAGGAGGGGACTGAGC 59.960 66.667 0.00 0.00 44.43 4.26
1174 1258 2.055042 CGTGGAGGAGGGGACTGAG 61.055 68.421 0.00 0.00 44.43 3.35
1175 1259 2.037367 CGTGGAGGAGGGGACTGA 59.963 66.667 0.00 0.00 44.43 3.41
1176 1260 3.775654 GCGTGGAGGAGGGGACTG 61.776 72.222 0.00 0.00 44.43 3.51
1179 1263 4.689549 TTCGCGTGGAGGAGGGGA 62.690 66.667 5.77 0.00 0.00 4.81
1180 1264 3.702048 TTTCGCGTGGAGGAGGGG 61.702 66.667 5.77 0.00 0.00 4.79
1182 1266 2.434359 GGTTTCGCGTGGAGGAGG 60.434 66.667 5.77 0.00 0.00 4.30
1243 1336 6.387192 TTCTGGGAAAATTCTCCATGACTA 57.613 37.500 0.00 0.00 37.20 2.59
1259 1352 1.881925 CGAAGCACAACCATTCTGGGA 60.882 52.381 0.00 0.00 43.37 4.37
1283 1376 3.768185 ATCGCGACCACGAATCCGG 62.768 63.158 12.93 0.00 46.59 5.14
1284 1377 1.876714 AATCGCGACCACGAATCCG 60.877 57.895 12.93 0.00 46.59 4.18
1285 1378 0.804544 TCAATCGCGACCACGAATCC 60.805 55.000 12.93 0.00 46.59 3.01
1286 1379 0.996462 TTCAATCGCGACCACGAATC 59.004 50.000 12.93 0.00 46.59 2.52
1287 1380 0.999406 CTTCAATCGCGACCACGAAT 59.001 50.000 12.93 0.00 46.59 3.34
1288 1381 1.623081 GCTTCAATCGCGACCACGAA 61.623 55.000 12.93 10.92 46.59 3.85
1323 1416 2.211468 AATTCCTTCCTCGCCACCCC 62.211 60.000 0.00 0.00 0.00 4.95
1327 1420 0.323360 CCCAAATTCCTTCCTCGCCA 60.323 55.000 0.00 0.00 0.00 5.69
1336 1429 1.298667 CGACGACCCCCAAATTCCT 59.701 57.895 0.00 0.00 0.00 3.36
1358 1816 4.778143 GCCGGAACCGATGGCTGT 62.778 66.667 15.07 0.00 45.40 4.40
1372 1830 4.770874 ACCAAATCCCCGTCGCCG 62.771 66.667 0.00 0.00 0.00 6.46
1394 1852 0.946221 CACCTCACCAGACAGCGAAC 60.946 60.000 0.00 0.00 0.00 3.95
1404 1862 1.131303 ACCCGAAATCCACCTCACCA 61.131 55.000 0.00 0.00 0.00 4.17
1405 1863 0.676782 CACCCGAAATCCACCTCACC 60.677 60.000 0.00 0.00 0.00 4.02
1407 1865 0.323629 GACACCCGAAATCCACCTCA 59.676 55.000 0.00 0.00 0.00 3.86
1526 1988 8.950007 ATAAAAAGTGGGATCTAAACCAGAAA 57.050 30.769 0.00 0.00 37.45 2.52
1629 2168 1.135315 CCAGCCGAGAAAATGCACG 59.865 57.895 0.00 0.00 0.00 5.34
1638 2177 3.749064 GACGCAGACCAGCCGAGA 61.749 66.667 0.00 0.00 0.00 4.04
1639 2178 4.803426 GGACGCAGACCAGCCGAG 62.803 72.222 0.00 0.00 43.12 4.63
1659 2198 4.202000 TGACACGTCACATTGAGCAATTTT 60.202 37.500 0.00 0.00 34.14 1.82
1661 2200 2.877786 TGACACGTCACATTGAGCAATT 59.122 40.909 0.00 0.00 34.14 2.32
1677 2376 4.806342 AAAAGTAATGGACACGTGACAC 57.194 40.909 25.01 10.26 0.00 3.67
1678 2377 4.445052 CGTAAAAGTAATGGACACGTGACA 59.555 41.667 25.01 20.34 0.00 3.58
1679 2378 4.143263 CCGTAAAAGTAATGGACACGTGAC 60.143 45.833 25.01 16.95 0.00 3.67
1716 2415 5.163513 CCATGCTTAAAAATCTGACACCAC 58.836 41.667 0.00 0.00 0.00 4.16
1764 2463 4.098349 TGCCATGCTTGCTAAAGGAAATAG 59.902 41.667 0.00 0.00 37.29 1.73
1786 2485 4.326504 ACAAACTGAAGGCAAGGATTTG 57.673 40.909 0.00 0.00 37.36 2.32
1816 2518 3.500982 CGATTTTTGCCATCAACGTCAT 58.499 40.909 0.00 0.00 30.75 3.06
1819 2521 1.883275 TCCGATTTTTGCCATCAACGT 59.117 42.857 0.00 0.00 30.75 3.99
1833 2535 2.676342 GCTACAAATGGAACGTCCGATT 59.324 45.455 0.00 0.00 40.17 3.34
1836 2538 0.368907 CGCTACAAATGGAACGTCCG 59.631 55.000 0.00 0.00 40.17 4.79
1845 2547 7.634817 CGTAAAAGTAGGATTTCGCTACAAATG 59.365 37.037 0.00 0.00 0.00 2.32
1870 2572 6.806751 TCCCAAGTACTCTAATGAGAATTCG 58.193 40.000 0.00 0.00 42.73 3.34
1883 2585 4.865365 CAGAGACGAATTTCCCAAGTACTC 59.135 45.833 0.00 0.00 0.00 2.59
1980 2695 3.850837 CGAATTTATTCACGTGCATGCAA 59.149 39.130 24.58 6.73 36.61 4.08
2021 2736 4.081752 ACCGAGAAAAATTGCATGCCATTA 60.082 37.500 16.61 0.00 0.00 1.90
2080 2795 2.224784 ACACGCGGAAACTGAAAATACC 59.775 45.455 12.47 0.00 0.00 2.73
2118 2843 5.390885 CCGGTCCATCAAAATTATATGCGAG 60.391 44.000 0.00 0.00 0.00 5.03
2201 2927 2.819608 ACGACCATTCCAAATCCACTTG 59.180 45.455 0.00 0.00 0.00 3.16
2221 2947 7.167535 ACGGAGGGAGTATTAGTCTATTAGAC 58.832 42.308 14.79 14.79 45.38 2.59
2222 2948 7.327064 ACGGAGGGAGTATTAGTCTATTAGA 57.673 40.000 0.00 0.00 0.00 2.10
2223 2949 7.121020 GGAACGGAGGGAGTATTAGTCTATTAG 59.879 44.444 0.00 0.00 0.00 1.73
2224 2950 6.944862 GGAACGGAGGGAGTATTAGTCTATTA 59.055 42.308 0.00 0.00 0.00 0.98
2225 2951 5.774184 GGAACGGAGGGAGTATTAGTCTATT 59.226 44.000 0.00 0.00 0.00 1.73
2226 2952 5.074790 AGGAACGGAGGGAGTATTAGTCTAT 59.925 44.000 0.00 0.00 0.00 1.98
2227 2953 4.414846 AGGAACGGAGGGAGTATTAGTCTA 59.585 45.833 0.00 0.00 0.00 2.59
2228 2954 3.204831 AGGAACGGAGGGAGTATTAGTCT 59.795 47.826 0.00 0.00 0.00 3.24
2229 2955 3.564264 AGGAACGGAGGGAGTATTAGTC 58.436 50.000 0.00 0.00 0.00 2.59
2230 2956 3.684408 AGGAACGGAGGGAGTATTAGT 57.316 47.619 0.00 0.00 0.00 2.24
2231 2957 6.667558 ATTTAGGAACGGAGGGAGTATTAG 57.332 41.667 0.00 0.00 0.00 1.73
2232 2958 9.827198 TTATATTTAGGAACGGAGGGAGTATTA 57.173 33.333 0.00 0.00 0.00 0.98
2233 2959 8.731591 TTATATTTAGGAACGGAGGGAGTATT 57.268 34.615 0.00 0.00 0.00 1.89
2234 2960 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
2235 2961 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2236 2962 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2237 2963 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2238 2964 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2239 2965 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2240 2966 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
2257 2983 9.007901 CATTTGTTGGAATCTCTAGAAAGACTT 57.992 33.333 0.00 0.00 0.00 3.01
2258 2984 8.378565 TCATTTGTTGGAATCTCTAGAAAGACT 58.621 33.333 0.00 0.00 0.00 3.24
2259 2985 8.447053 GTCATTTGTTGGAATCTCTAGAAAGAC 58.553 37.037 0.00 0.00 0.00 3.01
2260 2986 8.378565 AGTCATTTGTTGGAATCTCTAGAAAGA 58.621 33.333 0.00 0.00 0.00 2.52
2261 2987 8.558973 AGTCATTTGTTGGAATCTCTAGAAAG 57.441 34.615 0.00 0.00 0.00 2.62
2262 2988 9.436957 GTAGTCATTTGTTGGAATCTCTAGAAA 57.563 33.333 0.00 0.00 0.00 2.52
2263 2989 8.593679 TGTAGTCATTTGTTGGAATCTCTAGAA 58.406 33.333 0.00 0.00 0.00 2.10
2264 2990 8.134202 TGTAGTCATTTGTTGGAATCTCTAGA 57.866 34.615 0.00 0.00 0.00 2.43
2265 2991 8.954950 ATGTAGTCATTTGTTGGAATCTCTAG 57.045 34.615 0.00 0.00 0.00 2.43
2266 2992 9.817809 GTATGTAGTCATTTGTTGGAATCTCTA 57.182 33.333 0.00 0.00 35.70 2.43
2267 2993 7.492669 CGTATGTAGTCATTTGTTGGAATCTCT 59.507 37.037 0.00 0.00 35.70 3.10
2268 2994 7.254455 CCGTATGTAGTCATTTGTTGGAATCTC 60.254 40.741 0.00 0.00 35.70 2.75
2269 2995 6.538742 CCGTATGTAGTCATTTGTTGGAATCT 59.461 38.462 0.00 0.00 35.70 2.40
2270 2996 6.537301 TCCGTATGTAGTCATTTGTTGGAATC 59.463 38.462 0.00 0.00 35.70 2.52
2271 2997 6.411376 TCCGTATGTAGTCATTTGTTGGAAT 58.589 36.000 0.00 0.00 35.70 3.01
2272 2998 5.795972 TCCGTATGTAGTCATTTGTTGGAA 58.204 37.500 0.00 0.00 35.70 3.53
2273 2999 5.408880 TCCGTATGTAGTCATTTGTTGGA 57.591 39.130 0.00 0.00 35.70 3.53
2274 3000 4.034048 GCTCCGTATGTAGTCATTTGTTGG 59.966 45.833 0.00 0.00 35.70 3.77
2275 3001 4.629634 TGCTCCGTATGTAGTCATTTGTTG 59.370 41.667 0.00 0.00 35.70 3.33
2276 3002 4.827692 TGCTCCGTATGTAGTCATTTGTT 58.172 39.130 0.00 0.00 35.70 2.83
2277 3003 4.465632 TGCTCCGTATGTAGTCATTTGT 57.534 40.909 0.00 0.00 35.70 2.83
2278 3004 5.794687 TTTGCTCCGTATGTAGTCATTTG 57.205 39.130 0.00 0.00 35.70 2.32
2279 3005 6.597672 TCATTTTGCTCCGTATGTAGTCATTT 59.402 34.615 0.00 0.00 35.70 2.32
2280 3006 6.112734 TCATTTTGCTCCGTATGTAGTCATT 58.887 36.000 0.00 0.00 35.70 2.57
2281 3007 5.670485 TCATTTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
2282 3008 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2283 3009 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2284 3010 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2285 3011 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2286 3012 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2287 3013 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2288 3014 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2289 3015 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2290 3016 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2291 3017 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2292 3018 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2293 3019 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2294 3020 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2314 3040 9.477484 GGGTGTATGTAGACATATTTTAGAGTG 57.523 37.037 5.69 0.00 40.53 3.51
2315 3041 8.358148 CGGGTGTATGTAGACATATTTTAGAGT 58.642 37.037 5.69 0.00 40.53 3.24
2316 3042 8.358148 ACGGGTGTATGTAGACATATTTTAGAG 58.642 37.037 5.69 0.00 40.53 2.43
2317 3043 8.241497 ACGGGTGTATGTAGACATATTTTAGA 57.759 34.615 5.69 0.00 40.53 2.10
2333 3059 4.025360 TGGACTACAACATACGGGTGTAT 58.975 43.478 0.00 0.00 42.03 2.29
2334 3060 3.429492 TGGACTACAACATACGGGTGTA 58.571 45.455 0.00 0.00 34.45 2.90
2335 3061 2.250031 TGGACTACAACATACGGGTGT 58.750 47.619 0.00 0.00 0.00 4.16
2336 3062 3.536956 ATGGACTACAACATACGGGTG 57.463 47.619 0.00 0.00 0.00 4.61
2337 3063 4.020039 TCAAATGGACTACAACATACGGGT 60.020 41.667 0.00 0.00 0.00 5.28
2338 3064 4.509616 TCAAATGGACTACAACATACGGG 58.490 43.478 0.00 0.00 0.00 5.28
2339 3065 6.489127 TTTCAAATGGACTACAACATACGG 57.511 37.500 0.00 0.00 0.00 4.02
2340 3066 7.526608 ACATTTCAAATGGACTACAACATACG 58.473 34.615 14.70 0.00 0.00 3.06
2341 3067 8.730680 AGACATTTCAAATGGACTACAACATAC 58.269 33.333 14.70 0.00 0.00 2.39
2342 3068 8.862325 AGACATTTCAAATGGACTACAACATA 57.138 30.769 14.70 0.00 0.00 2.29
2343 3069 7.765695 AGACATTTCAAATGGACTACAACAT 57.234 32.000 14.70 0.00 0.00 2.71
2344 3070 8.684386 TTAGACATTTCAAATGGACTACAACA 57.316 30.769 14.70 1.25 0.00 3.33
2345 3071 9.959749 TTTTAGACATTTCAAATGGACTACAAC 57.040 29.630 14.70 0.00 0.00 3.32
2369 3095 9.788889 CCCTCCGTTCCTAAATATAAGTATTTT 57.211 33.333 0.00 0.00 40.21 1.82
2370 3096 9.162733 TCCCTCCGTTCCTAAATATAAGTATTT 57.837 33.333 0.00 0.00 41.92 1.40
2371 3097 8.731591 TCCCTCCGTTCCTAAATATAAGTATT 57.268 34.615 0.00 0.00 31.89 1.89
2372 3098 7.954620 ACTCCCTCCGTTCCTAAATATAAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
2373 3099 7.300658 ACTCCCTCCGTTCCTAAATATAAGTA 58.699 38.462 0.00 0.00 0.00 2.24
2374 3100 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2375 3101 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2378 3104 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
2379 3105 8.731591 AAATATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
2380 3106 7.628501 AAATATACTCCCTCCGTTCCTAAAT 57.371 36.000 0.00 0.00 0.00 1.40
2381 3107 7.441903 AAAATATACTCCCTCCGTTCCTAAA 57.558 36.000 0.00 0.00 0.00 1.85
2382 3108 7.234166 CCTAAAATATACTCCCTCCGTTCCTAA 59.766 40.741 0.00 0.00 0.00 2.69
2383 3109 6.723052 CCTAAAATATACTCCCTCCGTTCCTA 59.277 42.308 0.00 0.00 0.00 2.94
2384 3110 5.543020 CCTAAAATATACTCCCTCCGTTCCT 59.457 44.000 0.00 0.00 0.00 3.36
2385 3111 5.791666 CCTAAAATATACTCCCTCCGTTCC 58.208 45.833 0.00 0.00 0.00 3.62
2386 3112 5.236282 GCCTAAAATATACTCCCTCCGTTC 58.764 45.833 0.00 0.00 0.00 3.95
2387 3113 4.041321 GGCCTAAAATATACTCCCTCCGTT 59.959 45.833 0.00 0.00 0.00 4.44
2388 3114 3.581770 GGCCTAAAATATACTCCCTCCGT 59.418 47.826 0.00 0.00 0.00 4.69
2389 3115 3.368116 CGGCCTAAAATATACTCCCTCCG 60.368 52.174 0.00 0.00 0.00 4.63
2390 3116 3.055312 CCGGCCTAAAATATACTCCCTCC 60.055 52.174 0.00 0.00 0.00 4.30
2391 3117 3.836562 TCCGGCCTAAAATATACTCCCTC 59.163 47.826 0.00 0.00 0.00 4.30
2392 3118 3.838903 CTCCGGCCTAAAATATACTCCCT 59.161 47.826 0.00 0.00 0.00 4.20
2393 3119 3.581770 ACTCCGGCCTAAAATATACTCCC 59.418 47.826 0.00 0.00 0.00 4.30
2394 3120 4.562963 CCACTCCGGCCTAAAATATACTCC 60.563 50.000 0.00 0.00 0.00 3.85
2395 3121 4.562963 CCCACTCCGGCCTAAAATATACTC 60.563 50.000 0.00 0.00 0.00 2.59
2396 3122 3.326880 CCCACTCCGGCCTAAAATATACT 59.673 47.826 0.00 0.00 0.00 2.12
2397 3123 3.072038 ACCCACTCCGGCCTAAAATATAC 59.928 47.826 0.00 0.00 0.00 1.47
2632 3673 5.863898 TCATAAATCATGACACCGAAAACG 58.136 37.500 0.00 0.00 38.79 3.60
2666 3757 9.975218 ACACTGAAAACTCTATAATAAACCCAT 57.025 29.630 0.00 0.00 0.00 4.00
2667 3758 9.444600 GACACTGAAAACTCTATAATAAACCCA 57.555 33.333 0.00 0.00 0.00 4.51
2668 3759 9.444600 TGACACTGAAAACTCTATAATAAACCC 57.555 33.333 0.00 0.00 0.00 4.11
2683 3774 4.155826 CCACACAGTTCTTGACACTGAAAA 59.844 41.667 7.06 0.00 43.90 2.29
2759 3851 1.234821 TCGTTGAACATGCAGGGAAC 58.765 50.000 2.31 1.76 0.00 3.62
2764 3856 4.880886 TGGATTATCGTTGAACATGCAG 57.119 40.909 0.00 0.00 0.00 4.41
2776 3868 4.981054 CAGATCCGAGCATATGGATTATCG 59.019 45.833 4.56 0.00 44.92 2.92
2833 3953 1.819928 AGCATGCAACACGACCATAA 58.180 45.000 21.98 0.00 0.00 1.90
2840 3960 5.160699 AGAACATATTAGCATGCAACACG 57.839 39.130 21.98 5.98 0.00 4.49
2871 4022 7.258441 GCAGATCATATTGGCGTCTACTATAA 58.742 38.462 0.00 0.00 0.00 0.98
2872 4023 6.183360 GGCAGATCATATTGGCGTCTACTATA 60.183 42.308 0.00 0.00 0.00 1.31
2878 4029 1.696336 AGGCAGATCATATTGGCGTCT 59.304 47.619 0.00 0.00 43.85 4.18
2883 4034 5.533528 TGTCAATCAAGGCAGATCATATTGG 59.466 40.000 0.00 0.00 0.00 3.16
3003 4155 7.992754 AGAGGTATGGATATTGAAATGCTTC 57.007 36.000 0.00 0.00 0.00 3.86
3016 4177 6.621514 ACCAGAAAGGAAATAGAGGTATGGAT 59.378 38.462 0.00 0.00 41.22 3.41
3018 4179 6.253946 ACCAGAAAGGAAATAGAGGTATGG 57.746 41.667 0.00 0.00 41.22 2.74
3019 4180 7.928706 CACTACCAGAAAGGAAATAGAGGTATG 59.071 40.741 0.00 0.00 41.22 2.39
3023 4184 5.119694 GCACTACCAGAAAGGAAATAGAGG 58.880 45.833 0.00 0.00 41.22 3.69
3024 4185 5.734720 TGCACTACCAGAAAGGAAATAGAG 58.265 41.667 0.00 0.00 41.22 2.43
3026 4187 6.352516 AGATGCACTACCAGAAAGGAAATAG 58.647 40.000 0.00 0.00 41.22 1.73
3109 4274 5.531287 AGGCCAAAGGATATCGAACATTTAC 59.469 40.000 5.01 0.00 0.00 2.01
3216 4385 9.113876 GAACAATAAGAAGGTAAACAAATGACG 57.886 33.333 0.00 0.00 0.00 4.35
3272 4441 5.012239 ACTTCCAACATTGCTCATGTACAT 58.988 37.500 1.41 1.41 46.23 2.29
3287 4456 5.526846 TCAATGCCAATTTGAAACTTCCAAC 59.473 36.000 0.00 0.00 30.44 3.77
3328 4497 6.622896 GCCTTATGTATCACAACTTTGGTCAC 60.623 42.308 0.00 0.00 0.00 3.67
3332 4501 5.895636 TGCCTTATGTATCACAACTTTGG 57.104 39.130 0.00 0.00 0.00 3.28
3462 4643 1.930251 TTGGGGATGGCGATTTCAAA 58.070 45.000 0.00 0.00 0.00 2.69
3665 4876 5.064441 AGCAAGCACCATAATTTTCTGTC 57.936 39.130 0.00 0.00 0.00 3.51
3694 4911 8.033038 ACGATACATACACATACACAAGAAACT 58.967 33.333 0.00 0.00 0.00 2.66
3695 4912 8.181487 ACGATACATACACATACACAAGAAAC 57.819 34.615 0.00 0.00 0.00 2.78
4055 5278 5.362430 ACAACTCTATTTGGGTGAAGCAAAA 59.638 36.000 0.00 0.00 0.00 2.44
4416 6411 2.996621 ACTATCTGCGAAAAGAGCACAC 59.003 45.455 0.00 0.00 40.01 3.82
4418 6413 3.061429 GTGACTATCTGCGAAAAGAGCAC 59.939 47.826 0.00 0.00 40.01 4.40
4429 6424 4.515191 TGGTTGAACTTTGTGACTATCTGC 59.485 41.667 0.00 0.00 0.00 4.26
4898 6896 9.950496 ATCCTGAAATAAAGTCGCATATTAGAT 57.050 29.630 0.00 0.00 0.00 1.98
4908 6908 4.332819 GTGGGTCATCCTGAAATAAAGTCG 59.667 45.833 0.00 0.00 36.20 4.18
5006 7020 5.483231 TGGTATCAATGGAAAAAGATGCCAA 59.517 36.000 8.32 0.00 45.85 4.52
5018 7032 7.716799 AGCAATTAAACTTGGTATCAATGGA 57.283 32.000 0.00 0.00 35.22 3.41
5081 7095 7.976135 ATATAGATTTTCAAGCTGAGCGATT 57.024 32.000 0.00 0.00 0.00 3.34
5136 7150 5.269189 TCAAACCTTCTTTTGTCCCTTCTT 58.731 37.500 0.00 0.00 37.66 2.52
5138 7152 5.791336 ATCAAACCTTCTTTTGTCCCTTC 57.209 39.130 0.00 0.00 37.66 3.46
5262 7276 7.839680 AGTATGTTGAACTTTTTCCTGGAAT 57.160 32.000 10.45 0.00 0.00 3.01
5384 7398 2.286872 CCACAGATGATTGACAGAGCC 58.713 52.381 0.00 0.00 0.00 4.70
5457 7482 4.218200 TCAATGTAGTGCAAAGATTGTGGG 59.782 41.667 15.57 0.00 31.46 4.61
5666 7693 0.107165 GGGATACAGGTCCTTGTGGC 60.107 60.000 0.00 0.00 38.38 5.01
5676 7703 5.476599 TCAAGTTGAAACAATGGGATACAGG 59.523 40.000 2.20 0.00 39.74 4.00
5687 7714 7.044181 TGGTAATTGCATTCAAGTTGAAACAA 58.956 30.769 26.59 26.59 40.12 2.83
5707 7734 3.901222 TCTCACCTCACAGTCATTGGTAA 59.099 43.478 0.00 0.00 0.00 2.85
5737 7764 2.584835 AATTGGCAGTAGCTCACCAA 57.415 45.000 10.87 10.87 45.68 3.67
5799 7826 5.932619 AAAGTTGGTTTATAGGGGAATGC 57.067 39.130 0.00 0.00 0.00 3.56
5860 7893 3.118665 AGCAAAACAAGGCAACAGACAAT 60.119 39.130 0.00 0.00 41.41 2.71
5870 7903 2.009051 ACTGCAAAAGCAAAACAAGGC 58.991 42.857 0.00 0.00 0.00 4.35
5902 7938 2.098934 TGTGTGTGAAGCATTGGTTGTC 59.901 45.455 5.71 0.00 0.00 3.18
5908 7944 5.630061 TCGATAAATGTGTGTGAAGCATTG 58.370 37.500 0.00 0.00 33.68 2.82
5941 7977 9.844257 ATTGGTGACCATTAAAAGATTTGAAAA 57.156 25.926 4.56 0.00 31.53 2.29
5942 7978 9.270640 CATTGGTGACCATTAAAAGATTTGAAA 57.729 29.630 4.56 0.00 31.53 2.69
5943 7979 8.428063 ACATTGGTGACCATTAAAAGATTTGAA 58.572 29.630 4.56 0.00 31.53 2.69
5944 7980 7.961351 ACATTGGTGACCATTAAAAGATTTGA 58.039 30.769 4.56 0.00 31.53 2.69
5948 7984 7.396907 TCATGACATTGGTGACCATTAAAAGAT 59.603 33.333 4.56 0.00 31.53 2.40
5952 7988 6.907853 TTCATGACATTGGTGACCATTAAA 57.092 33.333 4.56 0.00 31.53 1.52
5955 7991 5.804944 TTTTCATGACATTGGTGACCATT 57.195 34.783 4.56 0.00 31.53 3.16
5957 7993 5.078949 AGATTTTCATGACATTGGTGACCA 58.921 37.500 0.00 0.00 0.00 4.02
5958 7994 5.183713 TGAGATTTTCATGACATTGGTGACC 59.816 40.000 0.00 0.00 0.00 4.02
5959 7995 6.258230 TGAGATTTTCATGACATTGGTGAC 57.742 37.500 0.00 0.00 0.00 3.67
5974 8010 9.865321 CATTAGTTGTTGGATTCATGAGATTTT 57.135 29.630 0.00 0.00 0.00 1.82
5975 8011 7.977853 GCATTAGTTGTTGGATTCATGAGATTT 59.022 33.333 0.00 0.00 0.00 2.17
5976 8012 7.341256 AGCATTAGTTGTTGGATTCATGAGATT 59.659 33.333 0.00 0.00 0.00 2.40
5977 8013 6.832384 AGCATTAGTTGTTGGATTCATGAGAT 59.168 34.615 0.00 0.00 0.00 2.75
5979 8015 6.446781 AGCATTAGTTGTTGGATTCATGAG 57.553 37.500 0.00 0.00 0.00 2.90
5980 8016 6.433716 TGAAGCATTAGTTGTTGGATTCATGA 59.566 34.615 0.00 0.00 0.00 3.07
5982 8018 6.209192 TGTGAAGCATTAGTTGTTGGATTCAT 59.791 34.615 0.00 0.00 0.00 2.57
5984 8020 5.858581 GTGTGAAGCATTAGTTGTTGGATTC 59.141 40.000 0.00 0.00 0.00 2.52
5985 8021 5.301551 TGTGTGAAGCATTAGTTGTTGGATT 59.698 36.000 0.00 0.00 0.00 3.01
5987 8023 4.036262 GTGTGTGAAGCATTAGTTGTTGGA 59.964 41.667 0.00 0.00 0.00 3.53
5988 8024 4.202000 TGTGTGTGAAGCATTAGTTGTTGG 60.202 41.667 0.00 0.00 0.00 3.77
5989 8025 4.919206 TGTGTGTGAAGCATTAGTTGTTG 58.081 39.130 0.00 0.00 0.00 3.33
5991 8027 4.640201 AGTTGTGTGTGAAGCATTAGTTGT 59.360 37.500 0.00 0.00 0.00 3.32
5992 8028 4.971830 CAGTTGTGTGTGAAGCATTAGTTG 59.028 41.667 0.00 0.00 0.00 3.16
5995 8031 4.818534 ACAGTTGTGTGTGAAGCATTAG 57.181 40.909 0.00 0.00 34.75 1.73
5996 8032 4.637977 TCAACAGTTGTGTGTGAAGCATTA 59.362 37.500 13.14 0.00 36.84 1.90
5997 8033 3.443329 TCAACAGTTGTGTGTGAAGCATT 59.557 39.130 13.14 0.00 36.84 3.56
5998 8034 3.016031 TCAACAGTTGTGTGTGAAGCAT 58.984 40.909 13.14 0.00 36.84 3.79
5999 8035 2.431454 TCAACAGTTGTGTGTGAAGCA 58.569 42.857 13.14 0.00 36.84 3.91
6001 8037 4.154015 TGAGTTCAACAGTTGTGTGTGAAG 59.846 41.667 13.14 0.00 36.84 3.02
6002 8038 4.068599 TGAGTTCAACAGTTGTGTGTGAA 58.931 39.130 13.14 0.00 36.84 3.18
6004 8040 4.345288 CATGAGTTCAACAGTTGTGTGTG 58.655 43.478 13.14 3.19 36.84 3.82
6005 8041 3.378112 CCATGAGTTCAACAGTTGTGTGT 59.622 43.478 13.14 0.00 36.84 3.72
6006 8042 3.627123 TCCATGAGTTCAACAGTTGTGTG 59.373 43.478 13.14 4.76 36.84 3.82
6007 8043 3.884895 TCCATGAGTTCAACAGTTGTGT 58.115 40.909 13.14 0.00 39.19 3.72
6008 8044 4.758674 AGATCCATGAGTTCAACAGTTGTG 59.241 41.667 13.14 3.04 0.00 3.33
6009 8045 4.978099 AGATCCATGAGTTCAACAGTTGT 58.022 39.130 13.14 0.00 0.00 3.32
6010 8046 4.999311 TGAGATCCATGAGTTCAACAGTTG 59.001 41.667 6.99 6.99 0.00 3.16
6011 8047 5.233083 TGAGATCCATGAGTTCAACAGTT 57.767 39.130 0.00 0.00 0.00 3.16
6012 8048 4.897509 TGAGATCCATGAGTTCAACAGT 57.102 40.909 0.00 0.00 0.00 3.55
6019 8076 6.550938 TGTACTTGATGAGATCCATGAGTT 57.449 37.500 0.00 0.00 35.17 3.01
6070 8127 3.491766 TTAAGGAGGATGAGACAGGGT 57.508 47.619 0.00 0.00 0.00 4.34
6115 8172 9.554395 TGACATTTGTGACTATTAAAAGAGACA 57.446 29.630 0.00 0.00 0.00 3.41
6373 8433 2.229543 TGCTGACATGATGCCTTCAAAC 59.770 45.455 0.00 0.00 38.03 2.93
6535 8595 8.859236 AGGTCACATGAGGATATTAATGATTG 57.141 34.615 0.00 0.00 0.00 2.67
6561 8633 3.128589 GCTCAGGTGAGTTTTGTGAACAA 59.871 43.478 8.74 0.00 43.85 2.83
6604 8679 0.914551 CTTGCTCGTCGGTGATAACG 59.085 55.000 0.00 0.00 40.17 3.18
7194 9554 2.740055 CAGACCAGCTCGTGTGGC 60.740 66.667 0.33 0.00 38.83 5.01
7195 9555 2.740055 GCAGACCAGCTCGTGTGG 60.740 66.667 10.52 0.00 41.30 4.17
7196 9556 3.108289 CGCAGACCAGCTCGTGTG 61.108 66.667 4.16 4.16 0.00 3.82
7197 9557 4.363990 CCGCAGACCAGCTCGTGT 62.364 66.667 0.00 0.00 0.00 4.49
7214 9574 0.676782 ATTGCCAGCTGGTACGTTCC 60.677 55.000 32.81 15.39 37.57 3.62
7216 9576 0.881118 CAATTGCCAGCTGGTACGTT 59.119 50.000 32.81 21.94 37.57 3.99
7270 9638 1.223417 TGCAGACACGTACGACGAGA 61.223 55.000 24.41 0.00 46.05 4.04
7271 9639 1.058590 GTGCAGACACGTACGACGAG 61.059 60.000 24.41 10.93 46.05 4.18
7272 9640 1.082561 GTGCAGACACGTACGACGA 60.083 57.895 24.41 0.00 46.05 4.20
7282 9650 2.683362 CGTAGGATGTAGAGTGCAGACA 59.317 50.000 0.00 0.00 0.00 3.41
7319 9687 3.558321 CCTTGGTGGGAAAGTTATCGACA 60.558 47.826 0.00 0.00 0.00 4.35
7332 9704 2.148768 GACGTTCTAAACCTTGGTGGG 58.851 52.381 0.00 0.00 41.11 4.61
7338 9710 1.145803 GCAGCGACGTTCTAAACCTT 58.854 50.000 0.00 0.00 0.00 3.50
7377 9753 7.766278 AGTGAGTAATACGCAATGAGATCTTTT 59.234 33.333 0.00 0.00 27.59 2.27
7378 9754 7.223582 CAGTGAGTAATACGCAATGAGATCTTT 59.776 37.037 17.19 0.00 44.54 2.52
7381 9757 6.209361 TCAGTGAGTAATACGCAATGAGATC 58.791 40.000 19.88 0.00 45.15 2.75
7383 9759 5.576447 TCAGTGAGTAATACGCAATGAGA 57.424 39.130 19.88 3.12 45.15 3.27
7386 9762 5.576774 TCAGTTCAGTGAGTAATACGCAATG 59.423 40.000 16.26 16.26 43.47 2.82
7387 9763 5.720202 TCAGTTCAGTGAGTAATACGCAAT 58.280 37.500 0.00 0.00 27.59 3.56
7388 9764 5.128992 TCAGTTCAGTGAGTAATACGCAA 57.871 39.130 0.00 0.00 27.59 4.85
7395 9771 5.105187 AGCATAGCATCAGTTCAGTGAGTAA 60.105 40.000 0.00 0.00 0.00 2.24
7397 9773 3.197333 AGCATAGCATCAGTTCAGTGAGT 59.803 43.478 0.00 0.00 0.00 3.41
7398 9774 3.556365 CAGCATAGCATCAGTTCAGTGAG 59.444 47.826 0.00 0.00 0.00 3.51
7410 9799 3.012518 GACAAAGTGACCAGCATAGCAT 58.987 45.455 0.00 0.00 0.00 3.79
7418 9816 1.217882 GTCGGTGACAAAGTGACCAG 58.782 55.000 6.59 0.11 39.74 4.00
7458 9857 1.271325 ACAATGACAAGATGGGTCGCA 60.271 47.619 0.00 0.00 38.10 5.10
7481 9880 8.838452 AACAACGATAAACAAAACGTAAATGA 57.162 26.923 0.00 0.00 38.00 2.57
7575 9989 1.733360 CCAAGCCATCCGCAATTTTTG 59.267 47.619 0.00 0.00 41.38 2.44
7605 10019 7.277981 AGGACTACATTATGTCTTTGCTTAACG 59.722 37.037 0.00 0.00 34.01 3.18
7635 10057 9.636789 ACTAATTTTAGTCCCGCCTATTTATTT 57.363 29.630 0.00 0.00 39.72 1.40
7677 10099 2.203252 AGCGCGATCAATGCCCAT 60.203 55.556 12.10 0.00 0.00 4.00
7678 10100 3.204119 CAGCGCGATCAATGCCCA 61.204 61.111 12.10 0.00 0.00 5.36
7679 10101 3.957535 CCAGCGCGATCAATGCCC 61.958 66.667 12.10 0.00 0.00 5.36
7680 10102 2.384391 CTTCCAGCGCGATCAATGCC 62.384 60.000 12.10 0.00 0.00 4.40
7681 10103 1.010350 CTTCCAGCGCGATCAATGC 60.010 57.895 12.10 0.00 0.00 3.56
7682 10104 1.194098 GATCTTCCAGCGCGATCAATG 59.806 52.381 12.10 0.00 34.98 2.82
7683 10105 1.506493 GATCTTCCAGCGCGATCAAT 58.494 50.000 12.10 1.40 34.98 2.57
7684 10106 0.530650 GGATCTTCCAGCGCGATCAA 60.531 55.000 12.10 0.00 36.28 2.57
7685 10107 1.068083 GGATCTTCCAGCGCGATCA 59.932 57.895 12.10 0.00 36.28 2.92
7686 10108 1.068083 TGGATCTTCCAGCGCGATC 59.932 57.895 12.10 12.21 42.67 3.69
7687 10109 3.220222 TGGATCTTCCAGCGCGAT 58.780 55.556 12.10 0.00 42.67 4.58
7703 10125 4.697756 TTCGCACCGGAAGCCCTG 62.698 66.667 9.46 0.00 0.00 4.45
7742 10164 0.543277 TCCTAGCATGAGTTGGGCTG 59.457 55.000 0.00 0.00 38.55 4.85
7745 10167 1.745141 GCAGTCCTAGCATGAGTTGGG 60.745 57.143 0.00 0.00 0.00 4.12
7792 10216 2.878406 GCTTGTGCTTGAGTAGGTCAAA 59.122 45.455 0.00 0.00 44.83 2.69
7793 10217 2.158827 TGCTTGTGCTTGAGTAGGTCAA 60.159 45.455 0.00 0.00 43.11 3.18
7794 10218 1.416030 TGCTTGTGCTTGAGTAGGTCA 59.584 47.619 0.00 0.00 40.48 4.02
7795 10219 2.169832 TGCTTGTGCTTGAGTAGGTC 57.830 50.000 0.00 0.00 40.48 3.85
7796 10220 2.498167 CTTGCTTGTGCTTGAGTAGGT 58.502 47.619 0.00 0.00 40.48 3.08
7797 10221 1.808945 CCTTGCTTGTGCTTGAGTAGG 59.191 52.381 0.00 0.00 40.48 3.18
7798 10222 2.740981 CTCCTTGCTTGTGCTTGAGTAG 59.259 50.000 0.00 0.00 40.48 2.57
7799 10223 2.104792 ACTCCTTGCTTGTGCTTGAGTA 59.895 45.455 0.00 0.00 38.85 2.59
7800 10224 1.133976 ACTCCTTGCTTGTGCTTGAGT 60.134 47.619 0.00 0.00 40.48 3.41
7891 10315 2.239400 GAAAGGGGCTTTGCTGTAACT 58.761 47.619 0.00 0.00 33.49 2.24
8027 10459 0.251165 ATACGTGCAGGCTTTGGGTT 60.251 50.000 6.26 0.00 0.00 4.11
8069 10501 3.118371 ACAGAAAGACACCGAAGAAAGGT 60.118 43.478 0.00 0.00 43.97 3.50
8075 10507 5.924475 ATAAACACAGAAAGACACCGAAG 57.076 39.130 0.00 0.00 0.00 3.79
8077 10509 6.092955 AGTATAAACACAGAAAGACACCGA 57.907 37.500 0.00 0.00 0.00 4.69
8078 10510 5.060569 CGAGTATAAACACAGAAAGACACCG 59.939 44.000 0.00 0.00 0.00 4.94
8079 10511 5.347907 CCGAGTATAAACACAGAAAGACACC 59.652 44.000 0.00 0.00 0.00 4.16
8098 10531 1.185618 TCTACCAGTGCAAGCCGAGT 61.186 55.000 0.00 0.00 0.00 4.18
8111 10544 4.955811 TTTGAAGACTCAGCTTCTACCA 57.044 40.909 9.40 0.00 43.60 3.25
8121 10554 0.881118 GCGCCCAATTTGAAGACTCA 59.119 50.000 0.00 0.00 0.00 3.41
8130 10563 3.061848 CCGAGTGGCGCCCAATTT 61.062 61.111 26.77 4.22 39.11 1.82
8140 10573 0.108615 CACTGGTAGAAGCCGAGTGG 60.109 60.000 0.00 0.00 35.74 4.00
8141 10574 0.737715 GCACTGGTAGAAGCCGAGTG 60.738 60.000 0.00 0.00 38.97 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.