Multiple sequence alignment - TraesCS6D01G057100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G057100 chr6D 100.000 2733 0 0 1 2733 27200698 27203430 0.000000e+00 5048
1 TraesCS6D01G057100 chr6D 80.290 827 120 28 1241 2052 27118908 27119706 3.920000e-163 584
2 TraesCS6D01G057100 chr6D 88.732 355 23 6 340 689 16859839 16859497 4.210000e-113 418
3 TraesCS6D01G057100 chr6D 82.660 421 65 8 11 426 340462572 340462155 1.550000e-97 366
4 TraesCS6D01G057100 chr6D 93.407 182 9 3 340 518 152996863 152996682 1.610000e-67 267
5 TraesCS6D01G057100 chr6D 86.765 136 14 4 552 684 392796593 392796459 6.100000e-32 148
6 TraesCS6D01G057100 chr6B 93.971 1924 90 17 822 2733 49878109 49880018 0.000000e+00 2887
7 TraesCS6D01G057100 chr6B 94.304 1106 43 12 824 1918 49663822 49664918 0.000000e+00 1676
8 TraesCS6D01G057100 chr6B 93.657 804 46 4 1 802 49662656 49663456 0.000000e+00 1197
9 TraesCS6D01G057100 chr6B 93.687 792 47 2 1 791 49873675 49874464 0.000000e+00 1182
10 TraesCS6D01G057100 chr6B 90.729 809 49 10 1947 2733 49664919 49665723 0.000000e+00 1055
11 TraesCS6D01G057100 chr6B 81.378 827 120 24 1241 2052 49415189 49414382 0.000000e+00 643
12 TraesCS6D01G057100 chr6B 92.399 421 30 2 9 427 677568583 677568163 1.400000e-167 599
13 TraesCS6D01G057100 chr6B 82.474 679 98 11 1220 1893 49762910 49763572 2.360000e-160 575
14 TraesCS6D01G057100 chr6B 89.630 270 27 1 425 694 677568133 677567865 2.610000e-90 342
15 TraesCS6D01G057100 chr7A 92.475 691 46 5 1 688 624886132 624886819 0.000000e+00 983
16 TraesCS6D01G057100 chr1A 92.420 686 49 3 1 683 540058324 540059009 0.000000e+00 976
17 TraesCS6D01G057100 chr1A 88.099 689 49 15 1 684 249772371 249773031 0.000000e+00 787
18 TraesCS6D01G057100 chr1A 86.614 127 9 3 2168 2289 399505866 399505743 1.710000e-27 134
19 TraesCS6D01G057100 chr1A 84.800 125 15 4 552 673 441759272 441759395 3.700000e-24 122
20 TraesCS6D01G057100 chr1A 88.119 101 7 2 2178 2278 486342401 486342306 6.180000e-22 115
21 TraesCS6D01G057100 chr2B 92.041 691 51 4 1 687 698101141 698101831 0.000000e+00 968
22 TraesCS6D01G057100 chr2B 88.811 143 15 1 2371 2513 245688093 245688234 1.010000e-39 174
23 TraesCS6D01G057100 chr6A 91.147 689 56 4 1 685 45862508 45863195 0.000000e+00 929
24 TraesCS6D01G057100 chr6A 82.173 819 118 14 1243 2052 28430197 28430996 0.000000e+00 678
25 TraesCS6D01G057100 chr7B 89.799 696 56 7 1 688 56922790 56922102 0.000000e+00 878
26 TraesCS6D01G057100 chr7B 94.286 70 4 0 714 783 42823532 42823463 1.030000e-19 108
27 TraesCS6D01G057100 chr2A 85.795 711 62 14 10 683 539969220 539968512 0.000000e+00 717
28 TraesCS6D01G057100 chr2A 89.362 141 14 1 2371 2511 669864299 669864160 2.800000e-40 176
29 TraesCS6D01G057100 chr3B 86.212 631 45 19 84 683 783885312 783885931 0.000000e+00 645
30 TraesCS6D01G057100 chr7D 89.368 348 21 5 340 683 583331285 583331620 9.050000e-115 424
31 TraesCS6D01G057100 chr7D 86.076 158 20 2 2370 2526 189169563 189169407 4.680000e-38 169
32 TraesCS6D01G057100 chr7D 88.462 104 7 3 2174 2275 390929900 390929800 1.330000e-23 121
33 TraesCS6D01G057100 chr3D 89.205 352 21 7 340 687 103371654 103371316 9.050000e-115 424
34 TraesCS6D01G057100 chr3D 87.097 279 16 8 408 682 28985566 28985304 5.720000e-77 298
35 TraesCS6D01G057100 chr3D 85.859 99 7 2 2177 2275 397136454 397136545 6.230000e-17 99
36 TraesCS6D01G057100 chr5D 89.080 348 22 9 340 683 30672333 30672668 4.210000e-113 418
37 TraesCS6D01G057100 chr5D 88.169 355 22 14 340 688 45653381 45653721 3.280000e-109 405
38 TraesCS6D01G057100 chr5D 93.956 182 8 3 340 518 550291662 550291843 3.470000e-69 272
39 TraesCS6D01G057100 chr5D 85.816 141 17 3 551 688 342509234 342509094 2.190000e-31 147
40 TraesCS6D01G057100 chr1D 88.849 278 14 6 340 612 416297435 416297700 2.620000e-85 326
41 TraesCS6D01G057100 chr1D 93.443 183 8 4 340 518 225429363 225429545 4.490000e-68 268
42 TraesCS6D01G057100 chr1D 88.356 146 15 2 2370 2514 63367463 63367319 1.010000e-39 174
43 TraesCS6D01G057100 chr4D 91.758 182 12 3 340 518 20118548 20118367 1.620000e-62 250
44 TraesCS6D01G057100 chr1B 90.511 137 12 1 2370 2506 364304942 364304807 2.160000e-41 180
45 TraesCS6D01G057100 chr1B 88.591 149 15 2 2370 2517 667935809 667935956 2.160000e-41 180
46 TraesCS6D01G057100 chr1B 88.119 101 6 3 2178 2278 678067237 678067331 6.180000e-22 115
47 TraesCS6D01G057100 chr4B 87.742 155 14 4 2370 2524 451064002 451064151 2.800000e-40 176
48 TraesCS6D01G057100 chr4B 89.216 102 4 3 2177 2278 640009051 640009145 1.330000e-23 121
49 TraesCS6D01G057100 chr5A 84.071 113 12 3 2177 2289 651716886 651716780 1.340000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G057100 chr6D 27200698 27203430 2732 False 5048.000000 5048 100.000000 1 2733 1 chr6D.!!$F2 2732
1 TraesCS6D01G057100 chr6D 27118908 27119706 798 False 584.000000 584 80.290000 1241 2052 1 chr6D.!!$F1 811
2 TraesCS6D01G057100 chr6B 49873675 49880018 6343 False 2034.500000 2887 93.829000 1 2733 2 chr6B.!!$F3 2732
3 TraesCS6D01G057100 chr6B 49662656 49665723 3067 False 1309.333333 1676 92.896667 1 2733 3 chr6B.!!$F2 2732
4 TraesCS6D01G057100 chr6B 49414382 49415189 807 True 643.000000 643 81.378000 1241 2052 1 chr6B.!!$R1 811
5 TraesCS6D01G057100 chr6B 49762910 49763572 662 False 575.000000 575 82.474000 1220 1893 1 chr6B.!!$F1 673
6 TraesCS6D01G057100 chr6B 677567865 677568583 718 True 470.500000 599 91.014500 9 694 2 chr6B.!!$R2 685
7 TraesCS6D01G057100 chr7A 624886132 624886819 687 False 983.000000 983 92.475000 1 688 1 chr7A.!!$F1 687
8 TraesCS6D01G057100 chr1A 540058324 540059009 685 False 976.000000 976 92.420000 1 683 1 chr1A.!!$F3 682
9 TraesCS6D01G057100 chr1A 249772371 249773031 660 False 787.000000 787 88.099000 1 684 1 chr1A.!!$F1 683
10 TraesCS6D01G057100 chr2B 698101141 698101831 690 False 968.000000 968 92.041000 1 687 1 chr2B.!!$F2 686
11 TraesCS6D01G057100 chr6A 45862508 45863195 687 False 929.000000 929 91.147000 1 685 1 chr6A.!!$F2 684
12 TraesCS6D01G057100 chr6A 28430197 28430996 799 False 678.000000 678 82.173000 1243 2052 1 chr6A.!!$F1 809
13 TraesCS6D01G057100 chr7B 56922102 56922790 688 True 878.000000 878 89.799000 1 688 1 chr7B.!!$R2 687
14 TraesCS6D01G057100 chr2A 539968512 539969220 708 True 717.000000 717 85.795000 10 683 1 chr2A.!!$R1 673
15 TraesCS6D01G057100 chr3B 783885312 783885931 619 False 645.000000 645 86.212000 84 683 1 chr3B.!!$F1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 826 0.106918 GGGTTTGTCCGGCCATATCA 60.107 55.0 2.24 0.0 37.0 2.15 F
816 931 0.179468 GGGGTAGTGTGTGTGTGTGT 59.821 55.0 0.00 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1546 5285 0.742505 CCTCTACGAACGCACCCATA 59.257 55.000 0.0 0.0 0.0 2.74 R
2059 5815 1.001815 CCCATTTTGTGTGTGACCGAC 60.002 52.381 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.901197 TTTGGTATTGACAGTAGCCAGA 57.099 40.909 4.91 0.00 0.00 3.86
49 50 1.257743 GACAGTAGCCAGACCTGACA 58.742 55.000 0.00 0.00 0.00 3.58
50 51 1.827969 GACAGTAGCCAGACCTGACAT 59.172 52.381 0.00 0.00 0.00 3.06
95 98 1.197910 CGATACCGGTCGAAGCTTTC 58.802 55.000 12.40 0.00 44.06 2.62
711 826 0.106918 GGGTTTGTCCGGCCATATCA 60.107 55.000 2.24 0.00 37.00 2.15
794 909 1.009183 AGGGAGGGAGGAAAATCGGTA 59.991 52.381 0.00 0.00 0.00 4.02
795 910 1.841919 GGGAGGGAGGAAAATCGGTAA 59.158 52.381 0.00 0.00 0.00 2.85
802 917 3.200605 GGAGGAAAATCGGTAAAGGGGTA 59.799 47.826 0.00 0.00 0.00 3.69
804 919 3.848377 AGGAAAATCGGTAAAGGGGTAGT 59.152 43.478 0.00 0.00 0.00 2.73
806 921 4.566278 GGAAAATCGGTAAAGGGGTAGTGT 60.566 45.833 0.00 0.00 0.00 3.55
809 924 1.619827 TCGGTAAAGGGGTAGTGTGTG 59.380 52.381 0.00 0.00 0.00 3.82
810 925 1.345415 CGGTAAAGGGGTAGTGTGTGT 59.655 52.381 0.00 0.00 0.00 3.72
811 926 2.774687 GGTAAAGGGGTAGTGTGTGTG 58.225 52.381 0.00 0.00 0.00 3.82
812 927 2.105306 GGTAAAGGGGTAGTGTGTGTGT 59.895 50.000 0.00 0.00 0.00 3.72
813 928 2.341846 AAAGGGGTAGTGTGTGTGTG 57.658 50.000 0.00 0.00 0.00 3.82
814 929 1.209621 AAGGGGTAGTGTGTGTGTGT 58.790 50.000 0.00 0.00 0.00 3.72
815 930 0.468226 AGGGGTAGTGTGTGTGTGTG 59.532 55.000 0.00 0.00 0.00 3.82
816 931 0.179468 GGGGTAGTGTGTGTGTGTGT 59.821 55.000 0.00 0.00 0.00 3.72
818 933 1.406341 GGGTAGTGTGTGTGTGTGTGT 60.406 52.381 0.00 0.00 0.00 3.72
820 935 2.343101 GTAGTGTGTGTGTGTGTGTGT 58.657 47.619 0.00 0.00 0.00 3.72
824 1298 4.956085 AGTGTGTGTGTGTGTGTGTATAT 58.044 39.130 0.00 0.00 0.00 0.86
826 1300 6.697395 AGTGTGTGTGTGTGTGTGTATATAT 58.303 36.000 0.00 0.00 0.00 0.86
872 4596 7.500559 AGAGAAGAGAAGAGAAGAGAAGATAGC 59.499 40.741 0.00 0.00 0.00 2.97
949 4679 8.457261 AGATTGCTCTACATTTTCTTTTAGCAG 58.543 33.333 0.00 0.00 39.62 4.24
955 4685 8.970691 TCTACATTTTCTTTTAGCAGCAAATC 57.029 30.769 0.00 0.00 0.00 2.17
956 4686 8.575589 TCTACATTTTCTTTTAGCAGCAAATCA 58.424 29.630 0.00 0.00 0.00 2.57
957 4687 7.412137 ACATTTTCTTTTAGCAGCAAATCAC 57.588 32.000 0.00 0.00 0.00 3.06
961 4691 3.507233 TCTTTTAGCAGCAAATCACCTGG 59.493 43.478 0.00 0.00 0.00 4.45
962 4692 2.584835 TTAGCAGCAAATCACCTGGT 57.415 45.000 0.00 0.00 41.98 4.00
1018 4748 5.443185 TTGGTGCTGATTTTTCTTCAGAG 57.557 39.130 4.93 0.00 42.63 3.35
1049 4779 1.146041 CTTTCCATCGGGCGGATCA 59.854 57.895 4.37 0.00 31.28 2.92
1173 4903 0.179936 GCAGGAGATCCACTTCCAGG 59.820 60.000 0.92 0.00 38.89 4.45
1202 4932 2.388735 TGTACAGAGCCCTCCATACAG 58.611 52.381 0.00 0.00 31.12 2.74
1214 4944 3.845781 TCCATACAGGAGCCTGAAATC 57.154 47.619 22.62 0.00 46.30 2.17
1543 5282 3.190439 ACCTCCTACCACCTTGCTTTAT 58.810 45.455 0.00 0.00 0.00 1.40
1544 5283 3.054361 ACCTCCTACCACCTTGCTTTATG 60.054 47.826 0.00 0.00 0.00 1.90
1545 5284 3.199946 CCTCCTACCACCTTGCTTTATGA 59.800 47.826 0.00 0.00 0.00 2.15
1546 5285 4.141390 CCTCCTACCACCTTGCTTTATGAT 60.141 45.833 0.00 0.00 0.00 2.45
1547 5286 5.071788 CCTCCTACCACCTTGCTTTATGATA 59.928 44.000 0.00 0.00 0.00 2.15
1600 5339 5.998454 ATATGTGTGCTCTTTATGCTGTC 57.002 39.130 0.00 0.00 0.00 3.51
1618 5357 5.106038 TGCTGTCATTTTGTTCTGATGATCC 60.106 40.000 0.00 0.00 32.92 3.36
1729 5472 6.385766 AGGTTCCTTGAAGATTGAAGATCT 57.614 37.500 0.00 0.00 0.00 2.75
1945 5698 6.128172 ACAATTGTCTTATCTTCTTTCTGCGG 60.128 38.462 4.92 0.00 0.00 5.69
1966 5722 4.023365 CGGGGAATAAGTAACGTAGGAGAG 60.023 50.000 0.00 0.00 0.00 3.20
1967 5723 4.280425 GGGGAATAAGTAACGTAGGAGAGG 59.720 50.000 0.00 0.00 0.00 3.69
1968 5724 4.280425 GGGAATAAGTAACGTAGGAGAGGG 59.720 50.000 0.00 0.00 0.00 4.30
1969 5725 4.892345 GGAATAAGTAACGTAGGAGAGGGT 59.108 45.833 0.00 0.00 0.00 4.34
1971 5727 6.547510 GGAATAAGTAACGTAGGAGAGGGTTA 59.452 42.308 0.00 0.00 0.00 2.85
2120 5876 2.727392 CGTAGGATTGGCCCGTCCA 61.727 63.158 21.72 8.36 44.85 4.02
2125 5881 2.562296 AGGATTGGCCCGTCCATATAT 58.438 47.619 21.72 2.13 46.04 0.86
2157 5913 9.868277 AAAGAAAACAGTGAAAATGAACACATA 57.132 25.926 0.00 0.00 39.18 2.29
2158 5914 9.520204 AAGAAAACAGTGAAAATGAACACATAG 57.480 29.630 0.00 0.00 39.18 2.23
2160 5916 9.515020 GAAAACAGTGAAAATGAACACATAGAA 57.485 29.630 0.00 0.00 39.18 2.10
2209 5965 7.902032 TCCGTAAAGAAATATAAGAGCGTTTG 58.098 34.615 0.00 0.00 0.00 2.93
2314 6070 9.523168 AACAACTAATTAATTGTACCAGCCTTA 57.477 29.630 12.32 0.00 38.08 2.69
2328 6084 0.678048 GCCTTAGCTCAGTGGTTGGG 60.678 60.000 0.00 0.00 35.50 4.12
2334 6090 1.604308 CTCAGTGGTTGGGCATGCA 60.604 57.895 21.36 0.00 0.00 3.96
2335 6091 1.152589 TCAGTGGTTGGGCATGCAA 60.153 52.632 21.36 2.70 0.00 4.08
2346 6122 2.961741 TGGGCATGCAAAGTTTAGTTCA 59.038 40.909 21.36 0.00 0.00 3.18
2377 6153 0.773644 ATGCACAGGGAGAACCACTT 59.226 50.000 0.00 0.00 43.89 3.16
2379 6155 1.347707 TGCACAGGGAGAACCACTTAG 59.652 52.381 0.00 0.00 43.89 2.18
2442 6218 8.263640 GGACCATGCTTATCTTCATACTCATAT 58.736 37.037 0.00 0.00 0.00 1.78
2483 6259 0.835971 TAGTTGGTGCAGAGGCTGGA 60.836 55.000 0.00 0.00 41.91 3.86
2499 6275 3.823304 GGCTGGAAAGTGACAATCTCTTT 59.177 43.478 5.76 5.76 41.27 2.52
2552 6328 0.330604 ACAGGGAGGCGACTACACTA 59.669 55.000 0.98 0.00 46.31 2.74
2648 6424 1.748122 GACGAGGAGGACCGCACTA 60.748 63.158 0.00 0.00 41.83 2.74
2707 6483 3.561503 CGTCGGATATCATTTGCGAGTA 58.438 45.455 4.83 0.00 37.62 2.59
2713 6489 5.863935 CGGATATCATTTGCGAGTATCTTCA 59.136 40.000 4.83 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.089201 TCACGACGACATATGTCAGGT 58.911 47.619 30.15 22.13 44.99 4.00
49 50 4.046938 AGCTTCAATCACGACGACATAT 57.953 40.909 0.00 0.00 0.00 1.78
50 51 3.503827 AGCTTCAATCACGACGACATA 57.496 42.857 0.00 0.00 0.00 2.29
80 83 1.668151 GCAGAAAGCTTCGACCGGT 60.668 57.895 6.92 6.92 41.15 5.28
95 98 2.380410 GCTACAACCGGTGTCGCAG 61.380 63.158 20.73 10.41 45.82 5.18
102 105 0.309612 CGCAAAAAGCTACAACCGGT 59.690 50.000 0.00 0.00 42.61 5.28
138 141 0.608856 ACCATGACGCCAAATGCTGA 60.609 50.000 0.00 0.00 38.05 4.26
154 157 1.205893 ACCGCAAAAAGCTTCAAACCA 59.794 42.857 0.00 0.00 42.61 3.67
157 160 1.285578 GCACCGCAAAAAGCTTCAAA 58.714 45.000 0.00 0.00 42.61 2.69
794 909 1.562475 ACACACACACACTACCCCTTT 59.438 47.619 0.00 0.00 0.00 3.11
795 910 1.134220 CACACACACACACTACCCCTT 60.134 52.381 0.00 0.00 0.00 3.95
802 917 2.753055 TACACACACACACACACACT 57.247 45.000 0.00 0.00 0.00 3.55
832 1306 9.434275 TCTTCTCTTCTCTTCTCTCTCTCTATA 57.566 37.037 0.00 0.00 0.00 1.31
840 1314 7.106239 TCTCTTCTCTTCTCTTCTCTTCTCTC 58.894 42.308 0.00 0.00 0.00 3.20
849 1323 6.260050 TCGCTATCTTCTCTTCTCTTCTCTTC 59.740 42.308 0.00 0.00 0.00 2.87
933 4663 6.424812 GGTGATTTGCTGCTAAAAGAAAATGT 59.575 34.615 0.00 0.00 35.84 2.71
955 4685 2.299582 TGGCAAATTCAATCACCAGGTG 59.700 45.455 14.19 14.19 34.45 4.00
956 4686 2.299867 GTGGCAAATTCAATCACCAGGT 59.700 45.455 0.00 0.00 0.00 4.00
957 4687 2.354003 GGTGGCAAATTCAATCACCAGG 60.354 50.000 12.42 0.00 45.11 4.45
961 4691 4.567971 TCAATGGTGGCAAATTCAATCAC 58.432 39.130 0.00 0.00 0.00 3.06
962 4692 4.886496 TCAATGGTGGCAAATTCAATCA 57.114 36.364 0.00 0.00 0.00 2.57
1018 4748 3.365364 CGATGGAAAGTTGAGCAACCTTC 60.365 47.826 13.62 13.62 42.06 3.46
1049 4779 3.876341 TGGTCGTACTTCCAAAACTGTT 58.124 40.909 3.87 0.00 0.00 3.16
1141 4871 2.910199 TCTCCTGCGAAGGAAATCATG 58.090 47.619 14.74 0.01 37.55 3.07
1173 4903 1.740025 GGGCTCTGTACATGTTTCAGC 59.260 52.381 19.34 14.53 0.00 4.26
1202 4932 3.452627 TGGAGAACTAGATTTCAGGCTCC 59.547 47.826 0.00 0.00 38.33 4.70
1213 4943 6.304624 TGTACAAGAGAAGTGGAGAACTAGA 58.695 40.000 0.00 0.00 38.56 2.43
1214 4944 6.207810 ACTGTACAAGAGAAGTGGAGAACTAG 59.792 42.308 0.00 0.00 38.56 2.57
1294 5025 2.234908 ACAGCATGAGGAGTAGGAACAC 59.765 50.000 0.00 0.00 39.69 3.32
1297 5028 2.111384 GGACAGCATGAGGAGTAGGAA 58.889 52.381 0.00 0.00 39.69 3.36
1543 5282 2.025898 TCTACGAACGCACCCATATCA 58.974 47.619 0.00 0.00 0.00 2.15
1544 5283 2.607282 CCTCTACGAACGCACCCATATC 60.607 54.545 0.00 0.00 0.00 1.63
1545 5284 1.340248 CCTCTACGAACGCACCCATAT 59.660 52.381 0.00 0.00 0.00 1.78
1546 5285 0.742505 CCTCTACGAACGCACCCATA 59.257 55.000 0.00 0.00 0.00 2.74
1547 5286 1.515954 CCTCTACGAACGCACCCAT 59.484 57.895 0.00 0.00 0.00 4.00
1600 5339 5.100259 GCACAGGATCATCAGAACAAAATG 58.900 41.667 0.00 0.00 0.00 2.32
1779 5523 2.680841 GTGCACCGAAGCCAAATACATA 59.319 45.455 5.22 0.00 0.00 2.29
1851 5595 3.776417 AGCAGGGATTTACCAAATGCATT 59.224 39.130 5.99 5.99 42.56 3.56
1945 5698 4.280425 CCCTCTCCTACGTTACTTATTCCC 59.720 50.000 0.00 0.00 0.00 3.97
2059 5815 1.001815 CCCATTTTGTGTGTGACCGAC 60.002 52.381 0.00 0.00 0.00 4.79
2157 5913 8.666821 AGGAGTACCTTTTAGTTGGTATTTTCT 58.333 33.333 0.00 0.00 45.36 2.52
2158 5914 8.859236 AGGAGTACCTTTTAGTTGGTATTTTC 57.141 34.615 0.00 0.00 45.36 2.29
2209 5965 7.988904 ACGCTCTTGTATTCTTTAGTGATAC 57.011 36.000 0.00 0.00 0.00 2.24
2263 6019 9.747898 TTCCCTTTGTTTAGAAATATAAGAGCA 57.252 29.630 0.00 0.00 0.00 4.26
2314 6070 1.303888 CATGCCCAACCACTGAGCT 60.304 57.895 0.00 0.00 0.00 4.09
2328 6084 8.589629 CAATTCTATGAACTAAACTTTGCATGC 58.410 33.333 11.82 11.82 0.00 4.06
2346 6122 7.083062 TCTCCCTGTGCATTATCAATTCTAT 57.917 36.000 0.00 0.00 0.00 1.98
2405 6181 6.894103 AGATAAGCATGGTCCTCAGAATTTTT 59.106 34.615 0.00 0.00 0.00 1.94
2450 6226 1.270839 CCAACTAGGGATGCATACGGG 60.271 57.143 1.96 0.00 0.00 5.28
2707 6483 1.417890 CCGAATAGCCCACCTGAAGAT 59.582 52.381 0.00 0.00 0.00 2.40
2713 6489 1.580059 TTCTTCCGAATAGCCCACCT 58.420 50.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.