Multiple sequence alignment - TraesCS6D01G056900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G056900 chr6D 100.000 3906 0 0 1 3906 27127923 27124018 0.000000e+00 7214.0
1 TraesCS6D01G056900 chr6D 95.613 2234 74 6 960 3176 27209707 27207481 0.000000e+00 3561.0
2 TraesCS6D01G056900 chr6D 84.693 1692 215 28 1001 2675 27329088 27327424 0.000000e+00 1650.0
3 TraesCS6D01G056900 chr6D 82.186 1409 188 35 960 2348 27313849 27312484 0.000000e+00 1153.0
4 TraesCS6D01G056900 chr6D 91.005 756 41 15 3169 3906 27207286 27206540 0.000000e+00 994.0
5 TraesCS6D01G056900 chr6D 83.924 734 83 21 3096 3823 27309724 27309020 0.000000e+00 669.0
6 TraesCS6D01G056900 chr6D 95.026 382 17 1 1 380 463100878 463101259 2.010000e-167 599.0
7 TraesCS6D01G056900 chr6D 75.726 585 118 20 1038 1604 29094568 29093990 4.970000e-69 272.0
8 TraesCS6D01G056900 chr6D 83.920 199 15 14 757 950 27210447 27210261 1.440000e-39 174.0
9 TraesCS6D01G056900 chr6D 81.884 138 22 3 3530 3666 29247045 29247180 3.190000e-21 113.0
10 TraesCS6D01G056900 chr6D 95.161 62 3 0 2825 2886 29222285 29222346 8.930000e-17 99.0
11 TraesCS6D01G056900 chr6A 92.803 2904 142 27 757 3613 31159639 31162522 0.000000e+00 4143.0
12 TraesCS6D01G056900 chr6A 81.390 1913 255 63 819 2675 31043914 31045781 0.000000e+00 1467.0
13 TraesCS6D01G056900 chr6A 85.067 750 75 24 3083 3820 31114782 31115506 0.000000e+00 730.0
14 TraesCS6D01G056900 chr6A 83.538 650 90 12 1617 2255 31108205 31108848 3.360000e-165 592.0
15 TraesCS6D01G056900 chr6A 84.946 558 53 16 2565 3107 31109139 31109680 1.600000e-148 536.0
16 TraesCS6D01G056900 chr6A 92.193 269 13 4 3644 3906 31162521 31162787 1.330000e-99 374.0
17 TraesCS6D01G056900 chr6A 91.078 269 16 5 3644 3906 28453716 28453450 1.330000e-94 357.0
18 TraesCS6D01G056900 chr6A 88.321 274 24 5 381 651 31157179 31157447 4.870000e-84 322.0
19 TraesCS6D01G056900 chr6A 79.795 391 70 8 1033 1421 47139842 47140225 3.840000e-70 276.0
20 TraesCS6D01G056900 chr6A 98.182 55 1 0 2831 2885 33185897 33185843 3.210000e-16 97.1
21 TraesCS6D01G056900 chr6B 91.902 2161 143 20 1151 3296 49701288 49699145 0.000000e+00 2992.0
22 TraesCS6D01G056900 chr6B 92.361 576 33 9 3335 3906 49699148 49698580 0.000000e+00 809.0
23 TraesCS6D01G056900 chr6B 77.083 432 72 23 3089 3507 60659528 60659945 1.410000e-54 224.0
24 TraesCS6D01G056900 chr6B 88.679 106 5 6 759 863 49701715 49701616 5.300000e-24 122.0
25 TraesCS6D01G056900 chr6B 81.159 138 23 3 3530 3666 58858232 58858097 1.480000e-19 108.0
26 TraesCS6D01G056900 chr6B 93.548 62 4 0 2825 2886 78446296 78446235 4.160000e-15 93.5
27 TraesCS6D01G056900 chrUn 83.333 1368 190 25 999 2348 76831486 76832833 0.000000e+00 1229.0
28 TraesCS6D01G056900 chrUn 83.333 1368 190 25 999 2348 241635563 241636910 0.000000e+00 1229.0
29 TraesCS6D01G056900 chrUn 81.913 1056 162 22 1629 2675 76751324 76750289 0.000000e+00 865.0
30 TraesCS6D01G056900 chrUn 85.507 759 77 23 3072 3823 76833394 76834126 0.000000e+00 761.0
31 TraesCS6D01G056900 chrUn 85.507 759 77 23 3072 3823 241637471 241638203 0.000000e+00 761.0
32 TraesCS6D01G056900 chrUn 87.835 485 44 6 1001 1476 76751796 76751318 4.410000e-154 555.0
33 TraesCS6D01G056900 chrUn 85.165 546 49 16 2565 3092 76832833 76833364 7.430000e-147 531.0
34 TraesCS6D01G056900 chrUn 85.165 546 49 16 2565 3092 241636910 241637441 7.430000e-147 531.0
35 TraesCS6D01G056900 chrUn 80.729 384 68 5 1033 1415 27038641 27039019 1.060000e-75 294.0
36 TraesCS6D01G056900 chrUn 72.174 575 129 22 1691 2251 27284522 27283965 3.140000e-31 147.0
37 TraesCS6D01G056900 chrUn 91.803 61 5 0 3601 3661 26686240 26686180 6.950000e-13 86.1
38 TraesCS6D01G056900 chr7D 95.276 381 17 1 1 380 593001699 593002079 1.550000e-168 603.0
39 TraesCS6D01G056900 chr7D 95.052 384 14 2 1 380 92920673 92921055 2.010000e-167 599.0
40 TraesCS6D01G056900 chr7D 95.039 383 16 1 1 380 533487650 533487268 2.010000e-167 599.0
41 TraesCS6D01G056900 chr5D 95.263 380 18 0 1 380 523659510 523659889 1.550000e-168 603.0
42 TraesCS6D01G056900 chr1D 95.065 385 14 1 1 380 25384398 25384782 5.580000e-168 601.0
43 TraesCS6D01G056900 chr3D 95.052 384 14 1 1 379 23398908 23399291 2.010000e-167 599.0
44 TraesCS6D01G056900 chr3D 89.362 47 5 0 1689 1735 549053166 549053120 4.210000e-05 60.2
45 TraesCS6D01G056900 chr2D 94.805 385 15 1 1 380 47691656 47691272 2.600000e-166 595.0
46 TraesCS6D01G056900 chr2D 93.750 400 16 3 1 391 641523080 641522681 3.360000e-165 592.0
47 TraesCS6D01G056900 chr4D 91.379 290 21 2 3330 3618 190481796 190481510 1.020000e-105 394.0
48 TraesCS6D01G056900 chr1A 88.316 291 27 7 3074 3363 363249454 363249738 3.740000e-90 342.0
49 TraesCS6D01G056900 chr5B 87.500 72 8 1 687 757 418463133 418463204 9.000000e-12 82.4
50 TraesCS6D01G056900 chr4B 96.774 31 1 0 511 541 455407809 455407779 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G056900 chr6D 27124018 27127923 3905 True 7214.000000 7214 100.000000 1 3906 1 chr6D.!!$R1 3905
1 TraesCS6D01G056900 chr6D 27327424 27329088 1664 True 1650.000000 1650 84.693000 1001 2675 1 chr6D.!!$R2 1674
2 TraesCS6D01G056900 chr6D 27206540 27210447 3907 True 1576.333333 3561 90.179333 757 3906 3 chr6D.!!$R4 3149
3 TraesCS6D01G056900 chr6D 27309020 27313849 4829 True 911.000000 1153 83.055000 960 3823 2 chr6D.!!$R5 2863
4 TraesCS6D01G056900 chr6D 29093990 29094568 578 True 272.000000 272 75.726000 1038 1604 1 chr6D.!!$R3 566
5 TraesCS6D01G056900 chr6A 31157179 31162787 5608 False 1613.000000 4143 91.105667 381 3906 3 chr6A.!!$F5 3525
6 TraesCS6D01G056900 chr6A 31043914 31045781 1867 False 1467.000000 1467 81.390000 819 2675 1 chr6A.!!$F1 1856
7 TraesCS6D01G056900 chr6A 31114782 31115506 724 False 730.000000 730 85.067000 3083 3820 1 chr6A.!!$F2 737
8 TraesCS6D01G056900 chr6A 31108205 31109680 1475 False 564.000000 592 84.242000 1617 3107 2 chr6A.!!$F4 1490
9 TraesCS6D01G056900 chr6B 49698580 49701715 3135 True 1307.666667 2992 90.980667 759 3906 3 chr6B.!!$R3 3147
10 TraesCS6D01G056900 chrUn 76831486 76834126 2640 False 840.333333 1229 84.668333 999 3823 3 chrUn.!!$F2 2824
11 TraesCS6D01G056900 chrUn 241635563 241638203 2640 False 840.333333 1229 84.668333 999 3823 3 chrUn.!!$F3 2824
12 TraesCS6D01G056900 chrUn 76750289 76751796 1507 True 710.000000 865 84.874000 1001 2675 2 chrUn.!!$R3 1674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.035725 CCACCCTTTAGTCCCGGTTC 60.036 60.0 0.00 0.0 0.0 3.62 F
722 978 0.105778 GCATCCACTCCTCAGCTACC 59.894 60.0 0.00 0.0 0.0 3.18 F
1445 4264 0.691078 ATCGACATGGCCACTACCCT 60.691 55.0 8.16 0.0 0.0 4.34 F
1881 4729 0.179073 CTTCATGGGTGCTAGGACGG 60.179 60.0 8.41 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1425 4244 0.180406 GGGTAGTGGCCATGTCGATT 59.820 55.000 9.72 0.00 0.0 3.34 R
1844 4692 0.767375 AGCAACACCATCACAGTCCT 59.233 50.000 0.00 0.00 0.0 3.85 R
2783 5883 1.956477 ACAAGGAGGCATCAACACAAC 59.044 47.619 0.00 0.00 0.0 3.32 R
3685 9256 0.249322 GTAGTACGGCATGGCACGAT 60.249 55.000 20.37 4.73 0.0 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.046296 AGCTAGCTAACACAATATATGAAACAC 57.954 33.333 17.69 0.00 0.00 3.32
44 45 8.283291 GCTAGCTAACACAATATATGAAACACC 58.717 37.037 7.70 0.00 0.00 4.16
45 46 9.547753 CTAGCTAACACAATATATGAAACACCT 57.452 33.333 0.00 0.00 0.00 4.00
47 48 9.899661 AGCTAACACAATATATGAAACACCTAA 57.100 29.630 0.00 0.00 0.00 2.69
57 58 7.907841 ATATGAAACACCTAAATTAACCCCC 57.092 36.000 0.00 0.00 0.00 5.40
72 73 3.076350 CCCCCAAAACCCCTAAACC 57.924 57.895 0.00 0.00 0.00 3.27
73 74 0.191314 CCCCCAAAACCCCTAAACCA 59.809 55.000 0.00 0.00 0.00 3.67
74 75 1.344065 CCCCAAAACCCCTAAACCAC 58.656 55.000 0.00 0.00 0.00 4.16
75 76 1.344065 CCCAAAACCCCTAAACCACC 58.656 55.000 0.00 0.00 0.00 4.61
76 77 1.344065 CCAAAACCCCTAAACCACCC 58.656 55.000 0.00 0.00 0.00 4.61
77 78 1.344065 CAAAACCCCTAAACCACCCC 58.656 55.000 0.00 0.00 0.00 4.95
78 79 0.191563 AAAACCCCTAAACCACCCCC 59.808 55.000 0.00 0.00 0.00 5.40
79 80 0.706938 AAACCCCTAAACCACCCCCT 60.707 55.000 0.00 0.00 0.00 4.79
80 81 0.706938 AACCCCTAAACCACCCCCTT 60.707 55.000 0.00 0.00 0.00 3.95
81 82 0.706938 ACCCCTAAACCACCCCCTTT 60.707 55.000 0.00 0.00 0.00 3.11
82 83 0.040646 CCCCTAAACCACCCCCTTTC 59.959 60.000 0.00 0.00 0.00 2.62
83 84 0.781278 CCCTAAACCACCCCCTTTCA 59.219 55.000 0.00 0.00 0.00 2.69
84 85 1.148236 CCCTAAACCACCCCCTTTCAA 59.852 52.381 0.00 0.00 0.00 2.69
85 86 2.426561 CCCTAAACCACCCCCTTTCAAA 60.427 50.000 0.00 0.00 0.00 2.69
86 87 3.310193 CCTAAACCACCCCCTTTCAAAA 58.690 45.455 0.00 0.00 0.00 2.44
87 88 3.712218 CCTAAACCACCCCCTTTCAAAAA 59.288 43.478 0.00 0.00 0.00 1.94
104 105 3.042481 AAAAACCTCAGCTCCTGCC 57.958 52.632 0.00 0.00 40.80 4.85
105 106 0.185901 AAAAACCTCAGCTCCTGCCA 59.814 50.000 0.00 0.00 40.80 4.92
106 107 0.251077 AAAACCTCAGCTCCTGCCAG 60.251 55.000 0.00 0.00 40.80 4.85
107 108 2.134630 AAACCTCAGCTCCTGCCAGG 62.135 60.000 3.69 3.69 42.51 4.45
108 109 3.007920 CCTCAGCTCCTGCCAGGT 61.008 66.667 11.27 0.00 40.80 4.00
109 110 2.268280 CTCAGCTCCTGCCAGGTG 59.732 66.667 11.27 9.77 42.29 4.00
114 115 2.046507 CTCCTGCCAGGTGCTGAC 60.047 66.667 11.27 0.00 41.11 3.51
115 116 3.947132 CTCCTGCCAGGTGCTGACG 62.947 68.421 11.27 0.00 41.11 4.35
121 122 4.662961 CAGGTGCTGACGCGTGGA 62.663 66.667 20.70 0.00 38.27 4.02
122 123 3.695606 AGGTGCTGACGCGTGGAT 61.696 61.111 20.70 0.00 39.65 3.41
123 124 3.490759 GGTGCTGACGCGTGGATG 61.491 66.667 20.70 4.59 39.65 3.51
124 125 4.152625 GTGCTGACGCGTGGATGC 62.153 66.667 20.70 15.70 39.65 3.91
127 128 2.494445 CTGACGCGTGGATGCCTA 59.506 61.111 20.70 0.00 0.00 3.93
128 129 1.068083 CTGACGCGTGGATGCCTAT 59.932 57.895 20.70 0.00 0.00 2.57
129 130 0.530650 CTGACGCGTGGATGCCTATT 60.531 55.000 20.70 0.00 0.00 1.73
130 131 0.809636 TGACGCGTGGATGCCTATTG 60.810 55.000 20.70 0.00 0.00 1.90
131 132 1.498865 GACGCGTGGATGCCTATTGG 61.499 60.000 20.70 0.00 0.00 3.16
132 133 1.523711 CGCGTGGATGCCTATTGGT 60.524 57.895 0.00 0.00 35.27 3.67
133 134 1.498865 CGCGTGGATGCCTATTGGTC 61.499 60.000 0.00 0.00 35.27 4.02
134 135 1.166531 GCGTGGATGCCTATTGGTCC 61.167 60.000 0.00 0.00 35.27 4.46
135 136 0.469917 CGTGGATGCCTATTGGTCCT 59.530 55.000 4.81 0.00 31.68 3.85
136 137 1.811558 CGTGGATGCCTATTGGTCCTG 60.812 57.143 4.81 0.00 31.68 3.86
137 138 0.846015 TGGATGCCTATTGGTCCTGG 59.154 55.000 4.81 0.00 31.68 4.45
138 139 0.846693 GGATGCCTATTGGTCCTGGT 59.153 55.000 0.00 0.00 35.27 4.00
139 140 1.215423 GGATGCCTATTGGTCCTGGTT 59.785 52.381 0.00 0.00 35.27 3.67
140 141 2.301346 GATGCCTATTGGTCCTGGTTG 58.699 52.381 0.00 0.00 35.27 3.77
141 142 0.331278 TGCCTATTGGTCCTGGTTGG 59.669 55.000 0.00 0.00 35.27 3.77
142 143 0.331616 GCCTATTGGTCCTGGTTGGT 59.668 55.000 0.00 0.00 37.07 3.67
143 144 1.955208 GCCTATTGGTCCTGGTTGGTG 60.955 57.143 0.00 0.00 37.07 4.17
144 145 1.340991 CCTATTGGTCCTGGTTGGTGG 60.341 57.143 0.00 0.00 37.07 4.61
145 146 0.039035 TATTGGTCCTGGTTGGTGGC 59.961 55.000 0.00 0.00 37.07 5.01
146 147 2.017668 ATTGGTCCTGGTTGGTGGCA 62.018 55.000 0.00 0.00 37.07 4.92
147 148 2.597510 GGTCCTGGTTGGTGGCAC 60.598 66.667 9.70 9.70 37.07 5.01
148 149 2.597510 GTCCTGGTTGGTGGCACC 60.598 66.667 29.75 29.75 39.22 5.01
158 159 4.572571 GTGGCACCAACCGGGACA 62.573 66.667 6.32 0.00 41.15 4.02
159 160 3.810188 TGGCACCAACCGGGACAA 61.810 61.111 6.32 0.00 41.15 3.18
160 161 2.519780 GGCACCAACCGGGACAAA 60.520 61.111 6.32 0.00 41.15 2.83
161 162 2.128507 GGCACCAACCGGGACAAAA 61.129 57.895 6.32 0.00 41.15 2.44
162 163 1.468506 GGCACCAACCGGGACAAAAT 61.469 55.000 6.32 0.00 41.15 1.82
163 164 0.319469 GCACCAACCGGGACAAAATG 60.319 55.000 6.32 0.00 41.15 2.32
164 165 0.319469 CACCAACCGGGACAAAATGC 60.319 55.000 6.32 0.00 41.15 3.56
165 166 1.291906 CCAACCGGGACAAAATGCC 59.708 57.895 6.32 0.00 40.01 4.40
166 167 1.291906 CAACCGGGACAAAATGCCC 59.708 57.895 6.32 0.00 41.11 5.36
167 168 1.155155 AACCGGGACAAAATGCCCT 59.845 52.632 6.32 0.00 42.40 5.19
168 169 1.184970 AACCGGGACAAAATGCCCTG 61.185 55.000 6.32 0.00 42.40 4.45
169 170 2.573340 CGGGACAAAATGCCCTGC 59.427 61.111 0.00 0.00 42.40 4.85
170 171 2.981302 GGGACAAAATGCCCTGCC 59.019 61.111 0.00 0.00 41.31 4.85
171 172 1.610379 GGGACAAAATGCCCTGCCT 60.610 57.895 0.00 0.00 41.31 4.75
172 173 0.324275 GGGACAAAATGCCCTGCCTA 60.324 55.000 0.00 0.00 41.31 3.93
173 174 1.689258 GGGACAAAATGCCCTGCCTAT 60.689 52.381 0.00 0.00 41.31 2.57
174 175 2.110578 GGACAAAATGCCCTGCCTATT 58.889 47.619 0.00 0.00 0.00 1.73
175 176 2.159057 GGACAAAATGCCCTGCCTATTG 60.159 50.000 0.00 0.00 0.00 1.90
176 177 1.832998 ACAAAATGCCCTGCCTATTGG 59.167 47.619 0.00 0.00 0.00 3.16
177 178 1.832998 CAAAATGCCCTGCCTATTGGT 59.167 47.619 0.00 0.00 35.27 3.67
178 179 1.780503 AAATGCCCTGCCTATTGGTC 58.219 50.000 0.00 0.00 35.27 4.02
179 180 0.106015 AATGCCCTGCCTATTGGTCC 60.106 55.000 0.00 0.00 35.27 4.46
180 181 2.011617 ATGCCCTGCCTATTGGTCCC 62.012 60.000 0.00 0.00 35.27 4.46
181 182 2.510906 CCCTGCCTATTGGTCCCG 59.489 66.667 0.00 0.00 35.27 5.14
182 183 2.510906 CCTGCCTATTGGTCCCGG 59.489 66.667 0.00 0.00 35.27 5.73
183 184 2.375345 CCTGCCTATTGGTCCCGGT 61.375 63.158 0.00 0.00 35.27 5.28
184 185 1.607612 CTGCCTATTGGTCCCGGTT 59.392 57.895 0.00 0.00 35.27 4.44
185 186 0.748005 CTGCCTATTGGTCCCGGTTG 60.748 60.000 0.00 0.00 35.27 3.77
186 187 1.453197 GCCTATTGGTCCCGGTTGG 60.453 63.158 0.00 0.00 35.27 3.77
187 188 1.996086 CCTATTGGTCCCGGTTGGT 59.004 57.895 0.00 0.00 34.77 3.67
188 189 0.393808 CCTATTGGTCCCGGTTGGTG 60.394 60.000 0.00 0.00 34.77 4.17
189 190 0.393808 CTATTGGTCCCGGTTGGTGG 60.394 60.000 0.00 0.00 34.77 4.61
190 191 2.487274 TATTGGTCCCGGTTGGTGGC 62.487 60.000 0.00 0.00 34.77 5.01
205 206 4.589675 GGCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
206 207 2.519780 GCACCAACCGGGACCAAA 60.520 61.111 6.32 0.00 41.15 3.28
207 208 2.561037 GCACCAACCGGGACCAAAG 61.561 63.158 6.32 0.00 41.15 2.77
208 209 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
209 210 2.989253 CCAACCGGGACCAAAGGC 60.989 66.667 6.32 0.00 40.01 4.35
210 211 2.989253 CAACCGGGACCAAAGGCC 60.989 66.667 6.32 0.00 0.00 5.19
211 212 4.295199 AACCGGGACCAAAGGCCC 62.295 66.667 6.32 0.00 36.26 5.80
251 252 3.637273 GCCCACGTGGAGGACCTT 61.637 66.667 36.07 0.00 37.39 3.50
252 253 2.663196 CCCACGTGGAGGACCTTC 59.337 66.667 36.07 0.00 37.39 3.46
253 254 1.913762 CCCACGTGGAGGACCTTCT 60.914 63.158 36.07 0.00 37.39 2.85
254 255 1.293498 CCACGTGGAGGACCTTCTG 59.707 63.158 31.31 0.00 37.39 3.02
255 256 1.472662 CCACGTGGAGGACCTTCTGT 61.473 60.000 31.31 0.00 37.39 3.41
256 257 0.038159 CACGTGGAGGACCTTCTGTC 60.038 60.000 7.95 0.00 43.67 3.51
264 265 1.080025 GACCTTCTGTCCCGGTTCG 60.080 63.158 0.00 0.00 38.09 3.95
265 266 1.813728 GACCTTCTGTCCCGGTTCGT 61.814 60.000 0.00 0.00 38.09 3.85
266 267 1.374252 CCTTCTGTCCCGGTTCGTG 60.374 63.158 0.00 0.00 0.00 4.35
267 268 1.366366 CTTCTGTCCCGGTTCGTGT 59.634 57.895 0.00 0.00 0.00 4.49
268 269 0.599558 CTTCTGTCCCGGTTCGTGTA 59.400 55.000 0.00 0.00 0.00 2.90
269 270 1.000060 CTTCTGTCCCGGTTCGTGTAA 60.000 52.381 0.00 0.00 0.00 2.41
270 271 0.599558 TCTGTCCCGGTTCGTGTAAG 59.400 55.000 0.00 0.00 0.00 2.34
271 272 0.599558 CTGTCCCGGTTCGTGTAAGA 59.400 55.000 0.00 0.00 0.00 2.10
272 273 1.000060 CTGTCCCGGTTCGTGTAAGAA 60.000 52.381 0.00 0.00 0.00 2.52
278 279 3.892200 GTTCGTGTAAGAACCGGGA 57.108 52.632 6.32 0.00 43.33 5.14
279 280 1.422388 GTTCGTGTAAGAACCGGGAC 58.578 55.000 6.32 0.00 43.33 4.46
280 281 1.000171 GTTCGTGTAAGAACCGGGACT 60.000 52.381 6.32 0.73 43.33 3.85
281 282 2.198827 TCGTGTAAGAACCGGGACTA 57.801 50.000 6.32 0.00 0.00 2.59
282 283 2.513753 TCGTGTAAGAACCGGGACTAA 58.486 47.619 6.32 0.00 0.00 2.24
283 284 2.890311 TCGTGTAAGAACCGGGACTAAA 59.110 45.455 6.32 0.00 0.00 1.85
284 285 3.057315 TCGTGTAAGAACCGGGACTAAAG 60.057 47.826 6.32 0.00 0.00 1.85
285 286 3.593096 GTGTAAGAACCGGGACTAAAGG 58.407 50.000 6.32 0.00 0.00 3.11
286 287 2.568509 TGTAAGAACCGGGACTAAAGGG 59.431 50.000 6.32 0.00 0.00 3.95
287 288 1.738474 AAGAACCGGGACTAAAGGGT 58.262 50.000 6.32 0.00 0.00 4.34
288 289 1.738474 AGAACCGGGACTAAAGGGTT 58.262 50.000 6.32 0.00 45.02 4.11
289 290 2.906568 AGAACCGGGACTAAAGGGTTA 58.093 47.619 6.32 0.00 42.54 2.85
290 291 2.836372 AGAACCGGGACTAAAGGGTTAG 59.164 50.000 6.32 0.00 42.54 2.34
291 292 1.576577 ACCGGGACTAAAGGGTTAGG 58.423 55.000 6.32 0.00 41.03 2.69
292 293 0.835276 CCGGGACTAAAGGGTTAGGG 59.165 60.000 0.00 0.00 41.03 3.53
293 294 1.576577 CGGGACTAAAGGGTTAGGGT 58.423 55.000 0.00 0.00 41.03 4.34
294 295 1.911357 CGGGACTAAAGGGTTAGGGTT 59.089 52.381 0.00 0.00 41.03 4.11
295 296 2.306805 CGGGACTAAAGGGTTAGGGTTT 59.693 50.000 0.00 0.00 41.03 3.27
296 297 3.245016 CGGGACTAAAGGGTTAGGGTTTT 60.245 47.826 0.00 0.00 41.03 2.43
297 298 4.019411 CGGGACTAAAGGGTTAGGGTTTTA 60.019 45.833 0.00 0.00 41.03 1.52
298 299 5.503927 GGGACTAAAGGGTTAGGGTTTTAG 58.496 45.833 0.00 0.00 41.03 1.85
299 300 5.014544 GGGACTAAAGGGTTAGGGTTTTAGT 59.985 44.000 7.88 7.88 44.56 2.24
300 301 6.215431 GGGACTAAAGGGTTAGGGTTTTAGTA 59.785 42.308 8.08 0.00 42.94 1.82
301 302 7.257016 GGGACTAAAGGGTTAGGGTTTTAGTAA 60.257 40.741 8.08 0.00 42.94 2.24
302 303 7.607991 GGACTAAAGGGTTAGGGTTTTAGTAAC 59.392 40.741 8.08 2.90 42.94 2.50
303 304 7.461749 ACTAAAGGGTTAGGGTTTTAGTAACC 58.538 38.462 6.68 2.45 41.81 2.85
304 305 5.928394 AAGGGTTAGGGTTTTAGTAACCA 57.072 39.130 11.55 0.00 45.18 3.67
305 306 5.246981 AGGGTTAGGGTTTTAGTAACCAC 57.753 43.478 11.55 0.00 45.18 4.16
306 307 4.043310 AGGGTTAGGGTTTTAGTAACCACC 59.957 45.833 11.55 7.38 45.18 4.61
307 308 6.999292 AGGGTTAGGGTTTTAGTAACCACCC 61.999 48.000 18.89 18.89 46.53 4.61
313 314 5.634118 GGGTTTTAGTAACCACCCTTTAGT 58.366 41.667 17.47 0.00 45.04 2.24
314 315 5.707298 GGGTTTTAGTAACCACCCTTTAGTC 59.293 44.000 17.47 0.00 45.04 2.59
315 316 5.707298 GGTTTTAGTAACCACCCTTTAGTCC 59.293 44.000 1.93 0.00 40.03 3.85
316 317 5.503634 TTTAGTAACCACCCTTTAGTCCC 57.496 43.478 0.00 0.00 0.00 4.46
317 318 1.904537 AGTAACCACCCTTTAGTCCCG 59.095 52.381 0.00 0.00 0.00 5.14
318 319 1.065926 GTAACCACCCTTTAGTCCCGG 60.066 57.143 0.00 0.00 0.00 5.73
319 320 0.769386 AACCACCCTTTAGTCCCGGT 60.769 55.000 0.00 0.00 0.00 5.28
320 321 0.769386 ACCACCCTTTAGTCCCGGTT 60.769 55.000 0.00 0.00 0.00 4.44
321 322 0.035725 CCACCCTTTAGTCCCGGTTC 60.036 60.000 0.00 0.00 0.00 3.62
322 323 0.390735 CACCCTTTAGTCCCGGTTCG 60.391 60.000 0.00 0.00 0.00 3.95
323 324 0.542702 ACCCTTTAGTCCCGGTTCGA 60.543 55.000 0.00 0.00 0.00 3.71
324 325 0.609662 CCCTTTAGTCCCGGTTCGAA 59.390 55.000 0.00 0.00 0.00 3.71
325 326 1.002315 CCCTTTAGTCCCGGTTCGAAA 59.998 52.381 0.00 1.13 0.00 3.46
326 327 2.550639 CCCTTTAGTCCCGGTTCGAAAA 60.551 50.000 0.00 0.00 0.00 2.29
327 328 2.481568 CCTTTAGTCCCGGTTCGAAAAC 59.518 50.000 0.00 0.00 34.46 2.43
334 335 4.460529 GGTTCGAAAACCGGGACA 57.539 55.556 6.32 0.00 45.33 4.02
335 336 2.705371 GGTTCGAAAACCGGGACAA 58.295 52.632 6.32 0.00 45.33 3.18
336 337 1.023502 GGTTCGAAAACCGGGACAAA 58.976 50.000 6.32 0.00 45.33 2.83
337 338 1.404748 GGTTCGAAAACCGGGACAAAA 59.595 47.619 6.32 0.00 45.33 2.44
338 339 2.542205 GGTTCGAAAACCGGGACAAAAG 60.542 50.000 6.32 0.00 45.33 2.27
339 340 2.041251 TCGAAAACCGGGACAAAAGT 57.959 45.000 6.32 0.00 39.14 2.66
340 341 2.367486 TCGAAAACCGGGACAAAAGTT 58.633 42.857 6.32 0.00 39.14 2.66
341 342 2.355444 TCGAAAACCGGGACAAAAGTTC 59.645 45.455 6.32 0.00 39.14 3.01
342 343 2.542205 CGAAAACCGGGACAAAAGTTCC 60.542 50.000 6.32 0.00 33.91 3.62
343 344 2.447408 AAACCGGGACAAAAGTTCCT 57.553 45.000 6.32 0.00 33.17 3.36
344 345 2.447408 AACCGGGACAAAAGTTCCTT 57.553 45.000 6.32 0.00 33.17 3.36
345 346 3.581265 AACCGGGACAAAAGTTCCTTA 57.419 42.857 6.32 0.00 33.17 2.69
346 347 2.854963 ACCGGGACAAAAGTTCCTTAC 58.145 47.619 6.32 0.00 33.17 2.34
347 348 2.173143 ACCGGGACAAAAGTTCCTTACA 59.827 45.455 6.32 0.00 33.17 2.41
348 349 3.215975 CCGGGACAAAAGTTCCTTACAA 58.784 45.455 0.00 0.00 33.17 2.41
349 350 3.633065 CCGGGACAAAAGTTCCTTACAAA 59.367 43.478 0.00 0.00 33.17 2.83
350 351 4.498513 CCGGGACAAAAGTTCCTTACAAAC 60.499 45.833 0.00 0.00 33.17 2.93
351 352 4.498513 CGGGACAAAAGTTCCTTACAAACC 60.499 45.833 0.00 0.00 33.17 3.27
352 353 4.498513 GGGACAAAAGTTCCTTACAAACCG 60.499 45.833 0.00 0.00 33.17 4.44
353 354 4.498513 GGACAAAAGTTCCTTACAAACCGG 60.499 45.833 0.00 0.00 0.00 5.28
354 355 3.181484 ACAAAAGTTCCTTACAAACCGGC 60.181 43.478 0.00 0.00 0.00 6.13
355 356 1.232119 AAGTTCCTTACAAACCGGCG 58.768 50.000 0.00 0.00 0.00 6.46
356 357 0.107268 AGTTCCTTACAAACCGGCGT 59.893 50.000 6.01 0.00 0.00 5.68
357 358 1.344114 AGTTCCTTACAAACCGGCGTA 59.656 47.619 6.01 0.00 0.00 4.42
358 359 2.142319 GTTCCTTACAAACCGGCGTAA 58.858 47.619 6.01 6.45 0.00 3.18
359 360 2.540265 TCCTTACAAACCGGCGTAAA 57.460 45.000 6.01 0.00 0.00 2.01
360 361 3.056588 TCCTTACAAACCGGCGTAAAT 57.943 42.857 6.01 0.00 0.00 1.40
361 362 2.743126 TCCTTACAAACCGGCGTAAATG 59.257 45.455 6.01 1.74 0.00 2.32
362 363 2.511879 CTTACAAACCGGCGTAAATGC 58.488 47.619 6.01 0.00 0.00 3.56
371 372 3.733236 GCGTAAATGCCCCTTTTCC 57.267 52.632 0.00 0.00 0.00 3.13
372 373 1.182667 GCGTAAATGCCCCTTTTCCT 58.817 50.000 0.00 0.00 0.00 3.36
373 374 2.371306 GCGTAAATGCCCCTTTTCCTA 58.629 47.619 0.00 0.00 0.00 2.94
374 375 2.956333 GCGTAAATGCCCCTTTTCCTAT 59.044 45.455 0.00 0.00 0.00 2.57
375 376 3.383505 GCGTAAATGCCCCTTTTCCTATT 59.616 43.478 0.00 0.00 0.00 1.73
376 377 4.581409 GCGTAAATGCCCCTTTTCCTATTA 59.419 41.667 0.00 0.00 0.00 0.98
377 378 5.278315 GCGTAAATGCCCCTTTTCCTATTAG 60.278 44.000 0.00 0.00 0.00 1.73
378 379 5.826208 CGTAAATGCCCCTTTTCCTATTAGT 59.174 40.000 0.00 0.00 0.00 2.24
379 380 6.238648 CGTAAATGCCCCTTTTCCTATTAGTG 60.239 42.308 0.00 0.00 0.00 2.74
384 385 4.793201 CCCCTTTTCCTATTAGTGGGAAG 58.207 47.826 3.32 0.00 44.57 3.46
388 389 3.814005 TTCCTATTAGTGGGAAGACGC 57.186 47.619 0.00 0.00 39.76 5.19
398 399 2.048127 GAAGACGCTGCCGGAAGT 60.048 61.111 12.24 0.76 39.22 3.01
399 400 1.668151 GAAGACGCTGCCGGAAGTT 60.668 57.895 12.24 0.00 39.22 2.66
413 414 2.806745 CGGAAGTTGTTGGCTCTCTTGA 60.807 50.000 0.00 0.00 0.00 3.02
416 417 2.565841 AGTTGTTGGCTCTCTTGACAC 58.434 47.619 0.00 0.00 0.00 3.67
420 421 1.131638 TTGGCTCTCTTGACACTGGT 58.868 50.000 0.00 0.00 0.00 4.00
424 425 0.683973 CTCTCTTGACACTGGTGGCT 59.316 55.000 8.11 0.00 39.96 4.75
425 426 1.895798 CTCTCTTGACACTGGTGGCTA 59.104 52.381 8.11 0.00 39.96 3.93
426 427 1.895798 TCTCTTGACACTGGTGGCTAG 59.104 52.381 10.86 10.86 41.76 3.42
427 428 1.620819 CTCTTGACACTGGTGGCTAGT 59.379 52.381 15.26 0.00 41.27 2.57
438 439 2.044769 TGGTGGCTAGTTAGGGTTCCTA 59.955 50.000 0.00 0.00 34.61 2.94
455 456 0.386113 CTACTTCCTGGTCGCTAGCC 59.614 60.000 9.66 0.00 0.00 3.93
526 527 7.888546 ACATTATTAAATAGGGATAGGGTGTGC 59.111 37.037 0.00 0.00 0.00 4.57
550 551 4.002982 TGCATTCATATGGCCGAGTATTC 58.997 43.478 2.13 0.00 32.15 1.75
551 552 4.256920 GCATTCATATGGCCGAGTATTCT 58.743 43.478 2.13 0.00 32.15 2.40
636 640 8.237267 AGACCGACATGATAAAAATGAAAAGAC 58.763 33.333 0.00 0.00 0.00 3.01
642 646 7.816031 ACATGATAAAAATGAAAAGACAGCAGG 59.184 33.333 0.00 0.00 0.00 4.85
644 648 7.370383 TGATAAAAATGAAAAGACAGCAGGAC 58.630 34.615 0.00 0.00 0.00 3.85
663 919 1.067212 ACGTCTCTGAGTCCAACACAC 59.933 52.381 4.32 0.00 0.00 3.82
668 924 1.754803 TCTGAGTCCAACACACGTTCT 59.245 47.619 0.00 0.00 31.13 3.01
673 929 2.093658 AGTCCAACACACGTTCTGTCTT 60.094 45.455 0.00 0.00 31.13 3.01
674 930 2.284417 GTCCAACACACGTTCTGTCTTC 59.716 50.000 0.00 0.00 31.13 2.87
675 931 2.167693 TCCAACACACGTTCTGTCTTCT 59.832 45.455 0.00 0.00 31.13 2.85
676 932 3.382227 TCCAACACACGTTCTGTCTTCTA 59.618 43.478 0.00 0.00 31.13 2.10
683 939 4.082679 ACACGTTCTGTCTTCTAGATGTCC 60.083 45.833 5.60 0.00 0.00 4.02
693 949 4.100653 TCTTCTAGATGTCCTTGATGCAGG 59.899 45.833 5.60 0.00 34.86 4.85
709 965 0.681887 CAGGCCACAATCTGCATCCA 60.682 55.000 5.01 0.00 0.00 3.41
712 968 0.737219 GCCACAATCTGCATCCACTC 59.263 55.000 0.00 0.00 0.00 3.51
717 973 2.093075 ACAATCTGCATCCACTCCTCAG 60.093 50.000 0.00 0.00 0.00 3.35
722 978 0.105778 GCATCCACTCCTCAGCTACC 59.894 60.000 0.00 0.00 0.00 3.18
724 980 1.411977 CATCCACTCCTCAGCTACCTG 59.588 57.143 0.00 0.00 40.54 4.00
752 1013 3.112709 GCCGACGTTGGAGCAGAC 61.113 66.667 26.69 2.32 0.00 3.51
794 2884 8.926710 GCCTATGTGATTGTACTGTATACATTC 58.073 37.037 5.91 1.03 0.00 2.67
993 3649 2.987125 GCCGCCTTCTTCCCTGTA 59.013 61.111 0.00 0.00 0.00 2.74
1294 4104 4.082523 CCGGGCGCTTCTCCTTGA 62.083 66.667 7.64 0.00 0.00 3.02
1425 4244 2.359169 CGTTGCTGCTCCCCTAGGA 61.359 63.158 11.48 0.00 41.08 2.94
1445 4264 0.691078 ATCGACATGGCCACTACCCT 60.691 55.000 8.16 0.00 0.00 4.34
1614 4453 1.299541 CACGTGAGGCCATGGAATAC 58.700 55.000 18.40 7.34 33.64 1.89
1844 4692 4.500887 CGCCGAGTTATGGAAGAGGAATAA 60.501 45.833 0.00 0.00 0.00 1.40
1881 4729 0.179073 CTTCATGGGTGCTAGGACGG 60.179 60.000 8.41 0.00 0.00 4.79
2086 4934 9.331282 GTTATCCATTAGAAAGTGTCTATGCTT 57.669 33.333 0.00 0.00 38.67 3.91
2284 5359 9.990360 TTGTTCTGTAGTGTTTCTGTTATGATA 57.010 29.630 0.00 0.00 0.00 2.15
2351 5436 6.765989 TGAATTCACATATGTTACTGGTAGCC 59.234 38.462 5.37 0.00 0.00 3.93
3032 8326 7.253422 CCATTCTCAAGTACTAAATTGCAAGG 58.747 38.462 4.94 0.00 0.00 3.61
3043 8337 3.473113 AATTGCAAGGGAGGGTTGTAT 57.527 42.857 4.94 0.00 0.00 2.29
3294 8845 2.711547 AGTAGTGCTGGTTTTTCTCCCT 59.288 45.455 0.00 0.00 0.00 4.20
3310 8861 3.206412 TCTCCCTTCTAGCTCCTCAGATT 59.794 47.826 0.00 0.00 0.00 2.40
3375 8926 7.215719 TGTTCCTACTCGGTCATAGATTATG 57.784 40.000 0.00 0.00 37.52 1.90
3467 9028 6.825944 TTTACACATGCTACATTGCCTTTA 57.174 33.333 0.00 0.00 0.00 1.85
3548 9114 7.985184 TCTGTGTAAGTGACTGACAACTAAAAT 59.015 33.333 3.92 0.00 0.00 1.82
3564 9130 9.927668 ACAACTAAAATTAACCTGATCATTTGG 57.072 29.630 0.00 0.00 0.00 3.28
3597 9163 9.220767 CTTCCTTCACTTATATGGGCTTTATAC 57.779 37.037 0.00 0.00 0.00 1.47
3635 9206 6.759827 ACATTGCTGCTTATTTTGGATCATTC 59.240 34.615 0.00 0.00 0.00 2.67
3685 9256 3.361281 AATTCTGAAGAGAGCATGCCA 57.639 42.857 15.66 2.69 0.00 4.92
3761 9333 8.204836 GCAGATTTCTGGAAGGTTATTCTAGTA 58.795 37.037 9.49 0.00 43.94 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.046296 GTGTTTCATATATTGTGTTAGCTAGCT 57.954 33.333 23.12 23.12 0.00 3.32
18 19 8.283291 GGTGTTTCATATATTGTGTTAGCTAGC 58.717 37.037 6.62 6.62 0.00 3.42
19 20 9.547753 AGGTGTTTCATATATTGTGTTAGCTAG 57.452 33.333 0.00 0.00 0.00 3.42
21 22 9.899661 TTAGGTGTTTCATATATTGTGTTAGCT 57.100 29.630 0.00 0.00 0.00 3.32
31 32 9.596308 GGGGGTTAATTTAGGTGTTTCATATAT 57.404 33.333 0.00 0.00 0.00 0.86
32 33 8.999905 GGGGGTTAATTTAGGTGTTTCATATA 57.000 34.615 0.00 0.00 0.00 0.86
33 34 7.907841 GGGGGTTAATTTAGGTGTTTCATAT 57.092 36.000 0.00 0.00 0.00 1.78
54 55 0.191314 TGGTTTAGGGGTTTTGGGGG 59.809 55.000 0.00 0.00 0.00 5.40
55 56 1.344065 GTGGTTTAGGGGTTTTGGGG 58.656 55.000 0.00 0.00 0.00 4.96
56 57 1.344065 GGTGGTTTAGGGGTTTTGGG 58.656 55.000 0.00 0.00 0.00 4.12
57 58 1.344065 GGGTGGTTTAGGGGTTTTGG 58.656 55.000 0.00 0.00 0.00 3.28
58 59 1.344065 GGGGTGGTTTAGGGGTTTTG 58.656 55.000 0.00 0.00 0.00 2.44
59 60 0.191563 GGGGGTGGTTTAGGGGTTTT 59.808 55.000 0.00 0.00 0.00 2.43
60 61 0.706938 AGGGGGTGGTTTAGGGGTTT 60.707 55.000 0.00 0.00 0.00 3.27
61 62 0.706938 AAGGGGGTGGTTTAGGGGTT 60.707 55.000 0.00 0.00 0.00 4.11
62 63 0.706938 AAAGGGGGTGGTTTAGGGGT 60.707 55.000 0.00 0.00 0.00 4.95
63 64 0.040646 GAAAGGGGGTGGTTTAGGGG 59.959 60.000 0.00 0.00 0.00 4.79
64 65 0.781278 TGAAAGGGGGTGGTTTAGGG 59.219 55.000 0.00 0.00 0.00 3.53
65 66 2.687003 TTGAAAGGGGGTGGTTTAGG 57.313 50.000 0.00 0.00 0.00 2.69
86 87 0.185901 TGGCAGGAGCTGAGGTTTTT 59.814 50.000 0.00 0.00 41.70 1.94
87 88 0.251077 CTGGCAGGAGCTGAGGTTTT 60.251 55.000 6.61 0.00 41.70 2.43
88 89 1.377994 CTGGCAGGAGCTGAGGTTT 59.622 57.895 6.61 0.00 41.70 3.27
89 90 2.600729 CCTGGCAGGAGCTGAGGTT 61.601 63.158 29.96 0.00 37.67 3.50
90 91 3.007920 CCTGGCAGGAGCTGAGGT 61.008 66.667 29.96 0.00 37.67 3.85
91 92 3.007920 ACCTGGCAGGAGCTGAGG 61.008 66.667 38.99 12.26 42.55 3.86
92 93 2.268280 CACCTGGCAGGAGCTGAG 59.732 66.667 38.99 16.64 37.67 3.35
93 94 4.025858 GCACCTGGCAGGAGCTGA 62.026 66.667 38.17 0.00 46.56 4.26
104 105 3.939837 ATCCACGCGTCAGCACCTG 62.940 63.158 9.86 0.00 45.49 4.00
105 106 3.695606 ATCCACGCGTCAGCACCT 61.696 61.111 9.86 0.00 45.49 4.00
106 107 3.490759 CATCCACGCGTCAGCACC 61.491 66.667 9.86 0.00 45.49 5.01
107 108 4.152625 GCATCCACGCGTCAGCAC 62.153 66.667 9.86 0.00 45.49 4.40
109 110 2.978452 ATAGGCATCCACGCGTCAGC 62.978 60.000 9.86 11.14 40.74 4.26
110 111 0.530650 AATAGGCATCCACGCGTCAG 60.531 55.000 9.86 3.57 0.00 3.51
111 112 0.809636 CAATAGGCATCCACGCGTCA 60.810 55.000 9.86 0.00 0.00 4.35
112 113 1.498865 CCAATAGGCATCCACGCGTC 61.499 60.000 9.86 0.00 0.00 5.19
113 114 1.523711 CCAATAGGCATCCACGCGT 60.524 57.895 5.58 5.58 0.00 6.01
114 115 1.498865 GACCAATAGGCATCCACGCG 61.499 60.000 3.53 3.53 39.06 6.01
115 116 1.166531 GGACCAATAGGCATCCACGC 61.167 60.000 0.00 0.00 39.06 5.34
116 117 0.469917 AGGACCAATAGGCATCCACG 59.530 55.000 0.00 0.00 39.06 4.94
117 118 1.477558 CCAGGACCAATAGGCATCCAC 60.478 57.143 0.00 0.00 39.06 4.02
118 119 0.846015 CCAGGACCAATAGGCATCCA 59.154 55.000 0.00 0.00 39.06 3.41
119 120 0.846693 ACCAGGACCAATAGGCATCC 59.153 55.000 0.00 0.00 39.06 3.51
120 121 2.301346 CAACCAGGACCAATAGGCATC 58.699 52.381 0.00 0.00 39.06 3.91
121 122 1.063717 CCAACCAGGACCAATAGGCAT 60.064 52.381 0.00 0.00 41.22 4.40
122 123 0.331278 CCAACCAGGACCAATAGGCA 59.669 55.000 0.00 0.00 41.22 4.75
123 124 0.331616 ACCAACCAGGACCAATAGGC 59.668 55.000 0.00 0.00 41.22 3.93
124 125 1.340991 CCACCAACCAGGACCAATAGG 60.341 57.143 0.00 0.00 41.22 2.57
125 126 1.955208 GCCACCAACCAGGACCAATAG 60.955 57.143 0.00 0.00 41.22 1.73
126 127 0.039035 GCCACCAACCAGGACCAATA 59.961 55.000 0.00 0.00 41.22 1.90
127 128 1.228862 GCCACCAACCAGGACCAAT 60.229 57.895 0.00 0.00 41.22 3.16
128 129 2.197324 GCCACCAACCAGGACCAA 59.803 61.111 0.00 0.00 41.22 3.67
129 130 3.099841 TGCCACCAACCAGGACCA 61.100 61.111 0.00 0.00 41.22 4.02
130 131 2.597510 GTGCCACCAACCAGGACC 60.598 66.667 0.00 0.00 41.22 4.46
131 132 2.597510 GGTGCCACCAACCAGGAC 60.598 66.667 9.55 0.00 41.22 3.85
141 142 4.572571 TGTCCCGGTTGGTGCCAC 62.573 66.667 0.00 0.00 34.77 5.01
142 143 2.856039 TTTTGTCCCGGTTGGTGCCA 62.856 55.000 0.00 0.00 34.77 4.92
143 144 1.468506 ATTTTGTCCCGGTTGGTGCC 61.469 55.000 0.00 0.00 34.77 5.01
144 145 0.319469 CATTTTGTCCCGGTTGGTGC 60.319 55.000 0.00 0.00 34.77 5.01
145 146 0.319469 GCATTTTGTCCCGGTTGGTG 60.319 55.000 0.00 0.00 34.77 4.17
146 147 1.468506 GGCATTTTGTCCCGGTTGGT 61.469 55.000 0.00 0.00 34.77 3.67
147 148 1.291906 GGCATTTTGTCCCGGTTGG 59.708 57.895 0.00 0.00 0.00 3.77
148 149 1.184970 AGGGCATTTTGTCCCGGTTG 61.185 55.000 0.00 0.00 45.08 3.77
149 150 1.155155 AGGGCATTTTGTCCCGGTT 59.845 52.632 0.00 0.00 45.08 4.44
150 151 1.606313 CAGGGCATTTTGTCCCGGT 60.606 57.895 0.00 0.00 45.08 5.28
151 152 3.005540 GCAGGGCATTTTGTCCCGG 62.006 63.158 0.00 0.00 45.08 5.73
152 153 2.573340 GCAGGGCATTTTGTCCCG 59.427 61.111 0.00 0.00 45.08 5.14
153 154 0.324275 TAGGCAGGGCATTTTGTCCC 60.324 55.000 0.00 0.00 45.08 4.46
154 155 1.780503 ATAGGCAGGGCATTTTGTCC 58.219 50.000 0.00 0.00 44.07 4.02
155 156 2.159057 CCAATAGGCAGGGCATTTTGTC 60.159 50.000 5.60 0.00 31.61 3.18
156 157 1.832998 CCAATAGGCAGGGCATTTTGT 59.167 47.619 5.60 0.00 31.61 2.83
157 158 1.832998 ACCAATAGGCAGGGCATTTTG 59.167 47.619 0.00 0.26 39.06 2.44
158 159 2.110578 GACCAATAGGCAGGGCATTTT 58.889 47.619 0.00 0.00 39.06 1.82
159 160 1.689258 GGACCAATAGGCAGGGCATTT 60.689 52.381 0.00 0.00 39.06 2.32
160 161 0.106015 GGACCAATAGGCAGGGCATT 60.106 55.000 0.00 0.00 39.06 3.56
161 162 1.538666 GGACCAATAGGCAGGGCAT 59.461 57.895 0.00 0.00 39.06 4.40
162 163 2.689691 GGGACCAATAGGCAGGGCA 61.690 63.158 0.00 0.00 39.06 5.36
163 164 2.195956 GGGACCAATAGGCAGGGC 59.804 66.667 0.00 0.00 39.06 5.19
164 165 2.510906 CGGGACCAATAGGCAGGG 59.489 66.667 0.00 0.00 39.06 4.45
165 166 1.921869 AACCGGGACCAATAGGCAGG 61.922 60.000 6.32 0.00 39.06 4.85
166 167 0.748005 CAACCGGGACCAATAGGCAG 60.748 60.000 6.32 0.00 39.06 4.85
167 168 1.301623 CAACCGGGACCAATAGGCA 59.698 57.895 6.32 0.00 39.06 4.75
168 169 1.453197 CCAACCGGGACCAATAGGC 60.453 63.158 6.32 0.00 40.01 3.93
169 170 0.393808 CACCAACCGGGACCAATAGG 60.394 60.000 6.32 0.00 41.15 2.57
170 171 0.393808 CCACCAACCGGGACCAATAG 60.394 60.000 6.32 0.00 41.15 1.73
171 172 1.686416 CCACCAACCGGGACCAATA 59.314 57.895 6.32 0.00 41.15 1.90
172 173 2.438795 CCACCAACCGGGACCAAT 59.561 61.111 6.32 0.00 41.15 3.16
173 174 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
188 189 4.589675 TTGGTCCCGGTTGGTGCC 62.590 66.667 0.00 0.00 34.77 5.01
189 190 2.519780 TTTGGTCCCGGTTGGTGC 60.520 61.111 0.00 0.00 34.77 5.01
190 191 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
191 192 2.518933 CCTTTGGTCCCGGTTGGT 59.481 61.111 0.00 0.00 34.77 3.67
192 193 2.989253 GCCTTTGGTCCCGGTTGG 60.989 66.667 0.00 0.00 0.00 3.77
193 194 2.989253 GGCCTTTGGTCCCGGTTG 60.989 66.667 0.00 0.00 0.00 3.77
194 195 4.295199 GGGCCTTTGGTCCCGGTT 62.295 66.667 0.84 0.00 42.67 4.44
234 235 3.607370 GAAGGTCCTCCACGTGGGC 62.607 68.421 33.40 20.00 36.21 5.36
235 236 1.913762 AGAAGGTCCTCCACGTGGG 60.914 63.158 33.40 22.94 35.89 4.61
236 237 1.293498 CAGAAGGTCCTCCACGTGG 59.707 63.158 29.26 29.26 35.89 4.94
237 238 0.038159 GACAGAAGGTCCTCCACGTG 60.038 60.000 9.08 9.08 40.83 4.49
238 239 2.352817 GACAGAAGGTCCTCCACGT 58.647 57.895 0.00 0.00 40.83 4.49
246 247 1.080025 CGAACCGGGACAGAAGGTC 60.080 63.158 6.32 0.00 46.20 3.85
247 248 1.835712 ACGAACCGGGACAGAAGGT 60.836 57.895 6.32 0.00 40.50 3.50
248 249 1.374252 CACGAACCGGGACAGAAGG 60.374 63.158 6.32 0.00 28.17 3.46
249 250 0.599558 TACACGAACCGGGACAGAAG 59.400 55.000 6.32 0.00 32.98 2.85
250 251 1.000060 CTTACACGAACCGGGACAGAA 60.000 52.381 6.32 0.00 32.98 3.02
251 252 0.599558 CTTACACGAACCGGGACAGA 59.400 55.000 6.32 0.00 32.98 3.41
252 253 0.599558 TCTTACACGAACCGGGACAG 59.400 55.000 6.32 0.00 32.98 3.51
253 254 1.039068 TTCTTACACGAACCGGGACA 58.961 50.000 6.32 0.00 32.98 4.02
254 255 1.422388 GTTCTTACACGAACCGGGAC 58.578 55.000 6.32 0.00 37.82 4.46
255 256 3.892200 GTTCTTACACGAACCGGGA 57.108 52.632 6.32 0.00 37.82 5.14
260 261 1.000171 AGTCCCGGTTCTTACACGAAC 60.000 52.381 0.00 0.00 41.91 3.95
261 262 1.331214 AGTCCCGGTTCTTACACGAA 58.669 50.000 0.00 0.00 0.00 3.85
262 263 2.198827 TAGTCCCGGTTCTTACACGA 57.801 50.000 0.00 0.00 0.00 4.35
263 264 3.248266 CTTTAGTCCCGGTTCTTACACG 58.752 50.000 0.00 0.00 0.00 4.49
264 265 3.593096 CCTTTAGTCCCGGTTCTTACAC 58.407 50.000 0.00 0.00 0.00 2.90
265 266 2.568509 CCCTTTAGTCCCGGTTCTTACA 59.431 50.000 0.00 0.00 0.00 2.41
266 267 2.568956 ACCCTTTAGTCCCGGTTCTTAC 59.431 50.000 0.00 0.00 0.00 2.34
267 268 2.906568 ACCCTTTAGTCCCGGTTCTTA 58.093 47.619 0.00 0.00 0.00 2.10
268 269 1.738474 ACCCTTTAGTCCCGGTTCTT 58.262 50.000 0.00 0.00 0.00 2.52
269 270 1.738474 AACCCTTTAGTCCCGGTTCT 58.262 50.000 0.00 0.15 33.22 3.01
270 271 2.093288 CCTAACCCTTTAGTCCCGGTTC 60.093 54.545 0.00 0.00 39.33 3.62
271 272 1.911357 CCTAACCCTTTAGTCCCGGTT 59.089 52.381 0.00 0.00 41.43 4.44
272 273 1.576577 CCTAACCCTTTAGTCCCGGT 58.423 55.000 0.00 0.00 33.92 5.28
273 274 0.835276 CCCTAACCCTTTAGTCCCGG 59.165 60.000 0.00 0.00 33.92 5.73
274 275 1.576577 ACCCTAACCCTTTAGTCCCG 58.423 55.000 0.00 0.00 33.92 5.14
275 276 4.393239 AAAACCCTAACCCTTTAGTCCC 57.607 45.455 0.00 0.00 33.92 4.46
276 277 6.131972 ACTAAAACCCTAACCCTTTAGTCC 57.868 41.667 0.00 0.00 39.30 3.85
277 278 7.607991 GGTTACTAAAACCCTAACCCTTTAGTC 59.392 40.741 8.83 0.00 41.41 2.59
278 279 7.073598 TGGTTACTAAAACCCTAACCCTTTAGT 59.926 37.037 10.07 10.07 43.50 2.24
279 280 7.391554 GTGGTTACTAAAACCCTAACCCTTTAG 59.608 40.741 4.55 0.00 39.06 1.85
280 281 7.230747 GTGGTTACTAAAACCCTAACCCTTTA 58.769 38.462 4.55 0.00 39.06 1.85
281 282 6.070656 GTGGTTACTAAAACCCTAACCCTTT 58.929 40.000 4.55 0.00 39.06 3.11
282 283 5.458069 GGTGGTTACTAAAACCCTAACCCTT 60.458 44.000 4.55 0.00 39.06 3.95
283 284 4.043310 GGTGGTTACTAAAACCCTAACCCT 59.957 45.833 4.55 0.00 39.06 4.34
284 285 4.335416 GGTGGTTACTAAAACCCTAACCC 58.665 47.826 4.55 0.00 39.06 4.11
291 292 5.707298 GGACTAAAGGGTGGTTACTAAAACC 59.293 44.000 0.00 0.00 40.67 3.27
292 293 5.707298 GGGACTAAAGGGTGGTTACTAAAAC 59.293 44.000 0.00 0.00 0.00 2.43
293 294 5.512921 CGGGACTAAAGGGTGGTTACTAAAA 60.513 44.000 0.00 0.00 0.00 1.52
294 295 4.020307 CGGGACTAAAGGGTGGTTACTAAA 60.020 45.833 0.00 0.00 0.00 1.85
295 296 3.515104 CGGGACTAAAGGGTGGTTACTAA 59.485 47.826 0.00 0.00 0.00 2.24
296 297 3.099141 CGGGACTAAAGGGTGGTTACTA 58.901 50.000 0.00 0.00 0.00 1.82
297 298 1.904537 CGGGACTAAAGGGTGGTTACT 59.095 52.381 0.00 0.00 0.00 2.24
298 299 1.065926 CCGGGACTAAAGGGTGGTTAC 60.066 57.143 0.00 0.00 0.00 2.50
299 300 1.278537 CCGGGACTAAAGGGTGGTTA 58.721 55.000 0.00 0.00 0.00 2.85
300 301 0.769386 ACCGGGACTAAAGGGTGGTT 60.769 55.000 6.32 0.00 0.00 3.67
301 302 0.769386 AACCGGGACTAAAGGGTGGT 60.769 55.000 6.32 0.00 31.96 4.16
302 303 0.035725 GAACCGGGACTAAAGGGTGG 60.036 60.000 6.32 0.00 31.96 4.61
303 304 0.390735 CGAACCGGGACTAAAGGGTG 60.391 60.000 6.32 0.00 31.96 4.61
304 305 0.542702 TCGAACCGGGACTAAAGGGT 60.543 55.000 6.32 0.00 0.00 4.34
305 306 0.609662 TTCGAACCGGGACTAAAGGG 59.390 55.000 6.32 0.00 0.00 3.95
306 307 2.460757 TTTCGAACCGGGACTAAAGG 57.539 50.000 6.32 0.00 0.00 3.11
307 308 2.481568 GGTTTTCGAACCGGGACTAAAG 59.518 50.000 6.32 0.00 32.47 1.85
308 309 2.493035 GGTTTTCGAACCGGGACTAAA 58.507 47.619 6.32 0.93 32.47 1.85
309 310 2.168326 GGTTTTCGAACCGGGACTAA 57.832 50.000 6.32 0.00 32.47 2.24
310 311 3.912899 GGTTTTCGAACCGGGACTA 57.087 52.632 6.32 0.00 32.47 2.59
311 312 4.785767 GGTTTTCGAACCGGGACT 57.214 55.556 6.32 0.00 32.47 3.85
317 318 1.023502 TTTGTCCCGGTTTTCGAACC 58.976 50.000 0.00 0.00 42.43 3.62
318 319 2.097954 ACTTTTGTCCCGGTTTTCGAAC 59.902 45.455 0.00 0.00 42.43 3.95
319 320 2.367486 ACTTTTGTCCCGGTTTTCGAA 58.633 42.857 0.00 0.00 42.43 3.71
320 321 2.041251 ACTTTTGTCCCGGTTTTCGA 57.959 45.000 0.00 0.00 42.43 3.71
321 322 2.542205 GGAACTTTTGTCCCGGTTTTCG 60.542 50.000 0.00 0.00 38.88 3.46
322 323 2.691526 AGGAACTTTTGTCCCGGTTTTC 59.308 45.455 0.00 0.00 27.25 2.29
323 324 2.742348 AGGAACTTTTGTCCCGGTTTT 58.258 42.857 0.00 0.00 27.25 2.43
324 325 2.447408 AGGAACTTTTGTCCCGGTTT 57.553 45.000 0.00 0.00 27.25 3.27
338 339 1.794512 TACGCCGGTTTGTAAGGAAC 58.205 50.000 1.90 0.00 0.00 3.62
339 340 2.540265 TTACGCCGGTTTGTAAGGAA 57.460 45.000 1.90 0.00 0.00 3.36
340 341 2.540265 TTTACGCCGGTTTGTAAGGA 57.460 45.000 1.90 0.00 32.61 3.36
341 342 2.729778 GCATTTACGCCGGTTTGTAAGG 60.730 50.000 1.90 7.78 32.61 2.69
342 343 2.511879 GCATTTACGCCGGTTTGTAAG 58.488 47.619 1.90 1.37 32.61 2.34
343 344 1.199558 GGCATTTACGCCGGTTTGTAA 59.800 47.619 1.90 7.64 43.52 2.41
344 345 0.803740 GGCATTTACGCCGGTTTGTA 59.196 50.000 1.90 0.77 43.52 2.41
345 346 1.582461 GGCATTTACGCCGGTTTGT 59.418 52.632 1.90 1.89 43.52 2.83
346 347 4.469052 GGCATTTACGCCGGTTTG 57.531 55.556 1.90 0.00 43.52 2.93
353 354 1.182667 AGGAAAAGGGGCATTTACGC 58.817 50.000 0.00 0.00 0.00 4.42
354 355 5.826208 ACTAATAGGAAAAGGGGCATTTACG 59.174 40.000 0.00 0.00 0.00 3.18
355 356 6.040504 CCACTAATAGGAAAAGGGGCATTTAC 59.959 42.308 0.00 0.00 0.00 2.01
356 357 6.133356 CCACTAATAGGAAAAGGGGCATTTA 58.867 40.000 0.00 0.00 0.00 1.40
357 358 4.962362 CCACTAATAGGAAAAGGGGCATTT 59.038 41.667 0.00 0.00 0.00 2.32
358 359 4.546674 CCACTAATAGGAAAAGGGGCATT 58.453 43.478 0.00 0.00 0.00 3.56
359 360 3.117131 CCCACTAATAGGAAAAGGGGCAT 60.117 47.826 0.00 0.00 32.04 4.40
360 361 2.243736 CCCACTAATAGGAAAAGGGGCA 59.756 50.000 0.00 0.00 32.04 5.36
361 362 2.512476 TCCCACTAATAGGAAAAGGGGC 59.488 50.000 0.00 0.00 32.04 5.80
362 363 4.477213 TCTTCCCACTAATAGGAAAAGGGG 59.523 45.833 0.00 0.00 41.54 4.79
363 364 5.437946 GTCTTCCCACTAATAGGAAAAGGG 58.562 45.833 0.00 0.00 41.54 3.95
364 365 5.116882 CGTCTTCCCACTAATAGGAAAAGG 58.883 45.833 0.00 0.00 41.54 3.11
365 366 4.571176 GCGTCTTCCCACTAATAGGAAAAG 59.429 45.833 0.00 0.00 41.54 2.27
366 367 4.224370 AGCGTCTTCCCACTAATAGGAAAA 59.776 41.667 0.00 0.00 41.54 2.29
367 368 3.773119 AGCGTCTTCCCACTAATAGGAAA 59.227 43.478 0.00 0.00 41.54 3.13
368 369 3.132289 CAGCGTCTTCCCACTAATAGGAA 59.868 47.826 0.00 0.00 39.86 3.36
369 370 2.693591 CAGCGTCTTCCCACTAATAGGA 59.306 50.000 0.00 0.00 0.00 2.94
370 371 2.803492 GCAGCGTCTTCCCACTAATAGG 60.803 54.545 0.00 0.00 0.00 2.57
371 372 2.474816 GCAGCGTCTTCCCACTAATAG 58.525 52.381 0.00 0.00 0.00 1.73
372 373 1.138266 GGCAGCGTCTTCCCACTAATA 59.862 52.381 0.00 0.00 0.00 0.98
373 374 0.107654 GGCAGCGTCTTCCCACTAAT 60.108 55.000 0.00 0.00 0.00 1.73
374 375 1.295423 GGCAGCGTCTTCCCACTAA 59.705 57.895 0.00 0.00 0.00 2.24
375 376 2.978824 GGCAGCGTCTTCCCACTA 59.021 61.111 0.00 0.00 0.00 2.74
376 377 4.379243 CGGCAGCGTCTTCCCACT 62.379 66.667 0.00 0.00 0.00 4.00
379 380 4.388499 TTCCGGCAGCGTCTTCCC 62.388 66.667 0.00 0.00 0.00 3.97
384 385 2.251642 AACAACTTCCGGCAGCGTC 61.252 57.895 0.00 0.00 0.00 5.19
388 389 2.644992 GCCAACAACTTCCGGCAG 59.355 61.111 0.00 0.00 44.25 4.85
398 399 2.564771 CAGTGTCAAGAGAGCCAACAA 58.435 47.619 0.00 0.00 0.00 2.83
399 400 1.202687 CCAGTGTCAAGAGAGCCAACA 60.203 52.381 0.00 0.00 0.00 3.33
413 414 1.276622 CCCTAACTAGCCACCAGTGT 58.723 55.000 0.00 0.00 0.00 3.55
416 417 1.209747 GGAACCCTAACTAGCCACCAG 59.790 57.143 0.00 0.00 0.00 4.00
420 421 3.771071 AGTAGGAACCCTAACTAGCCA 57.229 47.619 0.00 0.00 37.91 4.75
424 425 4.046360 ACCAGGAAGTAGGAACCCTAACTA 59.954 45.833 0.00 0.00 37.91 2.24
425 426 3.181398 ACCAGGAAGTAGGAACCCTAACT 60.181 47.826 0.00 0.00 37.91 2.24
426 427 3.179685 ACCAGGAAGTAGGAACCCTAAC 58.820 50.000 0.00 0.00 37.91 2.34
427 428 3.447950 GACCAGGAAGTAGGAACCCTAA 58.552 50.000 0.00 0.00 37.91 2.69
438 439 1.305381 AGGCTAGCGACCAGGAAGT 60.305 57.895 9.00 0.00 0.00 3.01
508 509 2.443255 CAGGCACACCCTATCCCTATTT 59.557 50.000 0.00 0.00 44.09 1.40
514 515 0.106519 AATGCAGGCACACCCTATCC 60.107 55.000 0.00 0.00 44.09 2.59
520 521 1.338973 CCATATGAATGCAGGCACACC 59.661 52.381 3.65 0.00 0.00 4.16
526 527 1.162698 CTCGGCCATATGAATGCAGG 58.837 55.000 2.24 0.00 0.00 4.85
595 599 6.465439 TGTCGGTCTCTATGTGATTTGTAT 57.535 37.500 0.00 0.00 0.00 2.29
601 605 6.901081 TTATCATGTCGGTCTCTATGTGAT 57.099 37.500 0.00 0.00 0.00 3.06
609 613 8.450964 TCTTTTCATTTTTATCATGTCGGTCTC 58.549 33.333 0.00 0.00 0.00 3.36
636 640 0.170116 GACTCAGAGACGTCCTGCTG 59.830 60.000 22.02 20.56 0.00 4.41
642 646 1.337071 TGTGTTGGACTCAGAGACGTC 59.663 52.381 7.70 7.70 0.00 4.34
644 648 1.772182 GTGTGTTGGACTCAGAGACG 58.228 55.000 3.79 0.00 0.00 4.18
658 914 4.278669 ACATCTAGAAGACAGAACGTGTGT 59.721 41.667 1.17 3.54 40.56 3.72
663 919 4.974368 AGGACATCTAGAAGACAGAACG 57.026 45.455 1.17 0.00 0.00 3.95
668 924 4.467438 TGCATCAAGGACATCTAGAAGACA 59.533 41.667 1.17 0.00 0.00 3.41
673 929 2.103771 GCCTGCATCAAGGACATCTAGA 59.896 50.000 0.00 0.00 40.02 2.43
674 930 2.492012 GCCTGCATCAAGGACATCTAG 58.508 52.381 0.00 0.00 40.02 2.43
675 931 1.141657 GGCCTGCATCAAGGACATCTA 59.858 52.381 0.00 0.00 45.75 1.98
676 932 0.106819 GGCCTGCATCAAGGACATCT 60.107 55.000 0.00 0.00 45.75 2.90
683 939 1.134367 CAGATTGTGGCCTGCATCAAG 59.866 52.381 3.32 0.00 0.00 3.02
693 949 0.737219 GAGTGGATGCAGATTGTGGC 59.263 55.000 0.00 0.00 0.00 5.01
709 965 0.901124 CTTGCAGGTAGCTGAGGAGT 59.099 55.000 25.66 0.00 45.94 3.85
712 968 1.601171 AGCTTGCAGGTAGCTGAGG 59.399 57.895 25.66 14.04 46.71 3.86
717 973 1.520342 CGAGGAGCTTGCAGGTAGC 60.520 63.158 0.36 0.36 45.96 3.58
732 993 4.717629 TGCTCCAACGTCGGCGAG 62.718 66.667 20.03 8.22 42.00 5.03
733 994 4.717629 CTGCTCCAACGTCGGCGA 62.718 66.667 20.03 4.99 42.00 5.54
745 1006 2.708386 AATATACTCGGCGTCTGCTC 57.292 50.000 6.85 0.00 42.25 4.26
748 1009 2.726760 GCTCAAATATACTCGGCGTCTG 59.273 50.000 6.85 0.97 0.00 3.51
752 1013 2.440539 AGGCTCAAATATACTCGGCG 57.559 50.000 0.00 0.00 0.00 6.46
982 3638 0.618458 ATGGCGCTTACAGGGAAGAA 59.382 50.000 7.64 0.00 0.00 2.52
983 3639 0.107703 CATGGCGCTTACAGGGAAGA 60.108 55.000 7.64 0.00 0.00 2.87
1045 3714 1.066908 GGAGAGCAGATCCTCGTCTTG 59.933 57.143 0.00 0.00 36.95 3.02
1294 4104 6.821388 GGATACTGTACCTGTCATTGAGATT 58.179 40.000 0.00 0.00 0.00 2.40
1425 4244 0.180406 GGGTAGTGGCCATGTCGATT 59.820 55.000 9.72 0.00 0.00 3.34
1445 4264 4.408821 GCACCTGGCCGTCCATCA 62.409 66.667 0.00 0.00 42.51 3.07
1485 4304 1.271926 ACCAATACCACCTGGAAGTGC 60.272 52.381 0.00 0.00 38.94 4.40
1614 4453 2.361610 ACAGGGGGCATGCTTTCG 60.362 61.111 18.92 5.43 0.00 3.46
1769 4617 1.068753 CCACCCTCTGCTCGCATAG 59.931 63.158 0.00 0.00 0.00 2.23
1844 4692 0.767375 AGCAACACCATCACAGTCCT 59.233 50.000 0.00 0.00 0.00 3.85
1881 4729 6.319141 AGTAGCTTGTCCATTTCAAAAGTC 57.681 37.500 0.00 0.00 0.00 3.01
2086 4934 7.016153 AGTTTGAAGACATGGTATTACCTGA 57.984 36.000 13.90 0.00 39.58 3.86
2284 5359 2.838736 CTACCACACAAGCAGTCAAGT 58.161 47.619 0.00 0.00 0.00 3.16
2351 5436 4.274459 GGCATAAAGGACACTAGCAGATTG 59.726 45.833 0.00 0.00 0.00 2.67
2783 5883 1.956477 ACAAGGAGGCATCAACACAAC 59.044 47.619 0.00 0.00 0.00 3.32
2996 8288 5.126396 ACTTGAGAATGGCAGTAAAAAGC 57.874 39.130 0.00 0.00 0.00 3.51
3032 8326 6.235664 TGTAGAGAAAAACATACAACCCTCC 58.764 40.000 0.00 0.00 0.00 4.30
3310 8861 4.654262 GGGAAGGGTATCAAGTCATCAGTA 59.346 45.833 0.00 0.00 0.00 2.74
3375 8926 4.332819 GCTACCACTTAACATGACACCATC 59.667 45.833 0.00 0.00 0.00 3.51
3435 8995 9.936108 CAATGTAGCATGTGTAAAATTAAAACG 57.064 29.630 0.00 0.00 0.00 3.60
3481 9042 8.004801 TCACTAGAACCTGATAGATCCATAACA 58.995 37.037 0.00 0.00 0.00 2.41
3515 9080 6.434340 TGTCAGTCACTTACACAGACAGATAT 59.566 38.462 0.00 0.00 34.09 1.63
3518 9083 3.951680 TGTCAGTCACTTACACAGACAGA 59.048 43.478 0.00 0.00 34.09 3.41
3519 9085 4.307443 TGTCAGTCACTTACACAGACAG 57.693 45.455 0.00 0.00 34.09 3.51
3521 9087 4.683832 AGTTGTCAGTCACTTACACAGAC 58.316 43.478 0.00 0.00 0.00 3.51
3548 9114 9.832445 GAAGTATAGACCAAATGATCAGGTTAA 57.168 33.333 6.58 0.00 35.36 2.01
3564 9130 8.035984 GCCCATATAAGTGAAGGAAGTATAGAC 58.964 40.741 0.00 0.00 0.00 2.59
3597 9163 1.208535 AGCAATGTGAAATGGCATGGG 59.791 47.619 0.00 0.00 0.00 4.00
3599 9165 1.663643 GCAGCAATGTGAAATGGCATG 59.336 47.619 0.00 0.00 0.00 4.06
3669 9240 1.218763 CGATGGCATGCTCTCTTCAG 58.781 55.000 18.92 2.58 0.00 3.02
3671 9242 0.935898 CACGATGGCATGCTCTCTTC 59.064 55.000 18.92 7.83 0.00 2.87
3672 9243 1.094073 GCACGATGGCATGCTCTCTT 61.094 55.000 18.92 5.48 38.84 2.85
3674 9245 2.541120 GGCACGATGGCATGCTCTC 61.541 63.158 18.92 13.21 43.14 3.20
3685 9256 0.249322 GTAGTACGGCATGGCACGAT 60.249 55.000 20.37 4.73 0.00 3.73
3743 9315 7.963532 TGCCTAATACTAGAATAACCTTCCAG 58.036 38.462 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.