AutoCloner

Multiple sequence alignment - TraesCS6D01G056800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G056800	chr6D	100.000	2498	0	0	1	2498	27121327	27123824	0.000000e+00	4614.0
1	TraesCS6D01G056800	chr6D	92.031	1807	89	16	714	2497	27204520	27206294	0.000000e+00	2488.0
2	TraesCS6D01G056800	chr6D	82.210	1113	114	39	602	1683	27307381	27308440	0.000000e+00	881.0
3	TraesCS6D01G056800	chr6D	79.479	999	116	48	603	1578	27305192	27306124	5.870000e-176	627.0
4	TraesCS6D01G056800	chr6B	88.690	2016	129	37	1	1972	49766812	49768772	0.000000e+00	2368.0
5	TraesCS6D01G056800	chr6B	92.872	968	47	8	1533	2498	49697390	49698337	0.000000e+00	1386.0
6	TraesCS6D01G056800	chr6B	88.496	452	38	7	1	441	49411323	49410875	3.660000e-148	534.0
7	TraesCS6D01G056800	chr6B	90.826	327	15	8	1969	2295	49768929	49769240	8.260000e-115	424.0
8	TraesCS6D01G056800	chr6B	83.878	459	51	13	714	1164	49881212	49881655	1.380000e-112	416.0
9	TraesCS6D01G056800	chr6B	88.672	256	22	3	795	1044	49669627	49669881	3.120000e-79	305.0
10	TraesCS6D01G056800	chr6B	90.308	227	10	5	1312	1535	49669939	49670156	1.130000e-73	287.0
11	TraesCS6D01G056800	chr6B	85.366	82	6	2	1829	1904	703003534	703003615	2.060000e-11	80.5
12	TraesCS6D01G056800	chr6B	85.366	82	6	2	1829	1904	703059193	703059274	2.060000e-11	80.5
13	TraesCS6D01G056800	chr6B	85.366	82	6	2	1829	1904	703101807	703101888	2.060000e-11	80.5
14	TraesCS6D01G056800	chr6B	84.146	82	7	2	1829	1904	703052212	703052293	9.580000e-10	75.0
15	TraesCS6D01G056800	chr6B	83.750	80	5	5	1829	1901	703010159	703010237	4.460000e-08	69.4
16	TraesCS6D01G056800	chr6B	91.304	46	4	0	2206	2251	49481220	49481175	2.070000e-06	63.9
17	TraesCS6D01G056800	chr6A	90.416	1346	75	19	1	1327	28432746	28434056	0.000000e+00	1722.0
18	TraesCS6D01G056800	chr6A	94.527	603	27	4	1898	2498	31163628	31163030	0.000000e+00	926.0
19	TraesCS6D01G056800	chr6A	83.136	931	95	32	786	1683	31116908	31116007	0.000000e+00	793.0
20	TraesCS6D01G056800	chr6A	92.816	515	23	5	1393	1905	28434087	28434589	0.000000e+00	734.0
21	TraesCS6D01G056800	chr6A	80.415	1011	117	43	602	1578	31119398	31118435	0.000000e+00	695.0
22	TraesCS6D01G056800	chr6A	94.190	327	15	1	1898	2224	28440385	28440707	1.730000e-136	496.0
23	TraesCS6D01G056800	chr6A	92.908	282	20	0	2217	2498	28452927	28453208	6.430000e-111	411.0
24	TraesCS6D01G056800	chr6A	78.105	475	71	16	55	520	31123990	31123540	1.140000e-68	270.0
25	TraesCS6D01G056800	chr6A	96.053	76	3	0	2363	2438	31047999	31047924	9.380000e-25	124.0
26	TraesCS6D01G056800	chrUn	77.261	1183	121	65	1078	2224	76835192	76834122	2.170000e-155	558.0
27	TraesCS6D01G056800	chrUn	77.261	1183	121	65	1078	2224	241639269	241638199	2.170000e-155	558.0
28	TraesCS6D01G056800	chrUn	82.456	456	53	13	602	1048	76835626	76835189	8.440000e-100	374.0
29	TraesCS6D01G056800	chrUn	82.456	456	53	13	602	1048	241639703	241639266	8.440000e-100	374.0
30	TraesCS6D01G056800	chrUn	81.949	277	28	11	1246	1519	475407875	475407618	5.410000e-52	215.0
31	TraesCS6D01G056800	chrUn	90.789	76	7	0	2363	2438	76788970	76788895	4.400000e-18	102.0
32	TraesCS6D01G056800	chrUn	75.342	146	28	8	2094	2235	95070436	95070295	2.070000e-06	63.9
33	TraesCS6D01G056800	chrUn	100.000	28	0	0	2208	2235	95022613	95022586	4.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G056800	chr6D	27121327	27123824	2497	False	4614	4614	100.0000	1	2498	1	chr6D.!!$F1	2497
1	TraesCS6D01G056800	chr6D	27204520	27206294	1774	False	2488	2488	92.0310	714	2497	1	chr6D.!!$F2	1783
2	TraesCS6D01G056800	chr6D	27305192	27308440	3248	False	754	881	80.8445	602	1683	2	chr6D.!!$F3	1081
3	TraesCS6D01G056800	chr6B	49766812	49769240	2428	False	1396	2368	89.7580	1	2295	2	chr6B.!!$F9	2294
4	TraesCS6D01G056800	chr6B	49697390	49698337	947	False	1386	1386	92.8720	1533	2498	1	chr6B.!!$F1	965
5	TraesCS6D01G056800	chr6B	49669627	49670156	529	False	296	305	89.4900	795	1535	2	chr6B.!!$F8	740
6	TraesCS6D01G056800	chr6A	28432746	28434589	1843	False	1228	1722	91.6160	1	1905	2	chr6A.!!$F3	1904
7	TraesCS6D01G056800	chr6A	31163030	31163628	598	True	926	926	94.5270	1898	2498	1	chr6A.!!$R3	600
8	TraesCS6D01G056800	chr6A	31116007	31119398	3391	True	744	793	81.7755	602	1683	2	chr6A.!!$R4	1081
9	TraesCS6D01G056800	chrUn	76834122	76835626	1504	True	466	558	79.8585	602	2224	2	chrUn.!!$R5	1622
10	TraesCS6D01G056800	chrUn	241638199	241639703	1504	True	466	558	79.8585	602	2224	2	chrUn.!!$R6	1622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
740	2595	1.907739	TGGCAGTAGGCACCATCTC	59.092	57.895	0.0	0.0	46.46	2.75	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2401	4562	1.402787	CATGAACCCCTTGTATGCCC	58.597	55.0	0.0	0.0	0.0	5.36	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
62	64	9.937175	GATTAAGGAACATAAGACTTAACATGC	57.063	33.333	0.00	0.00	37.98	4.06
63	65	8.856153	TTAAGGAACATAAGACTTAACATGCA	57.144	30.769	0.00	0.00	32.30	3.96
64	66	7.759489	AAGGAACATAAGACTTAACATGCAA	57.241	32.000	0.00	0.00	0.00	4.08
99	101	9.754382	CAAATATTAGCAAACTAATCCAAGCAT	57.246	29.630	1.75	0.00	44.17	3.79
126	128	6.128742	GCATGAATCTCAACGAAAGCAAAATT	60.129	34.615	0.00	0.00	0.00	1.82
129	131	8.673626	TGAATCTCAACGAAAGCAAAATTATC	57.326	30.769	0.00	0.00	0.00	1.75
239	241	3.008594	CCCCACATAGTACAACAGGAACA	59.991	47.826	0.00	0.00	0.00	3.18
240	242	4.000988	CCCACATAGTACAACAGGAACAC	58.999	47.826	0.00	0.00	0.00	3.32
241	243	4.504165	CCCACATAGTACAACAGGAACACA	60.504	45.833	0.00	0.00	0.00	3.72
261	263	5.861787	ACACAAAAGAAAACGGTGAAAAGAG	59.138	36.000	0.00	0.00	33.82	2.85
576	578	9.244799	GAAAACCAACATTAGAAAAAGATTCGT	57.755	29.630	0.00	0.00	0.00	3.85
608	2463	5.470098	GCTGATGTAGAAAGAAAACAGGTCA	59.530	40.000	0.00	0.00	0.00	4.02
642	2497	6.183360	GGAAAATAGAAAGATGAGCAGCATGT	60.183	38.462	0.00	0.00	37.34	3.21
681	2536	7.333423	CGTGTAAGATCCAAGGTTATTTTCAGA	59.667	37.037	0.00	0.00	0.00	3.27
695	2550	9.878599	GGTTATTTTCAGATATATTGTCAACGG	57.121	33.333	0.00	0.00	0.00	4.44
708	2563	8.835467	ATATTGTCAACGGAAATTAATTCGTG	57.165	30.769	13.68	9.30	39.05	4.35
709	2564	5.676532	TGTCAACGGAAATTAATTCGTGT	57.323	34.783	13.68	4.95	39.05	4.49
710	2565	5.681880	TGTCAACGGAAATTAATTCGTGTC	58.318	37.500	13.68	3.06	39.05	3.67
711	2566	5.084055	GTCAACGGAAATTAATTCGTGTCC	58.916	41.667	13.68	10.13	39.05	4.02
712	2567	4.998672	TCAACGGAAATTAATTCGTGTCCT	59.001	37.500	13.68	0.00	39.05	3.85
740	2595	1.907739	TGGCAGTAGGCACCATCTC	59.092	57.895	0.00	0.00	46.46	2.75
778	2634	3.515104	ACATTGGAAAATTGGCTACAGGG	59.485	43.478	0.00	0.00	0.00	4.45
793	2649	2.479562	AGGGCACTCCAACCTGAAT	58.520	52.632	0.00	0.00	38.24	2.57
883	2739	3.013921	TCAAACGTTGATATTGCCCTCC	58.986	45.455	0.00	0.00	34.08	4.30
897	2767	3.042682	TGCCCTCCGAACTCCAATATAA	58.957	45.455	0.00	0.00	0.00	0.98
898	2768	3.071023	TGCCCTCCGAACTCCAATATAAG	59.929	47.826	0.00	0.00	0.00	1.73
899	2769	3.323979	GCCCTCCGAACTCCAATATAAGA	59.676	47.826	0.00	0.00	0.00	2.10
900	2770	4.561734	GCCCTCCGAACTCCAATATAAGAG	60.562	50.000	1.32	1.32	36.16	2.85
901	2771	4.833380	CCCTCCGAACTCCAATATAAGAGA	59.167	45.833	8.52	0.00	34.13	3.10
902	2772	5.279056	CCCTCCGAACTCCAATATAAGAGAC	60.279	48.000	8.52	2.90	34.13	3.36
903	2773	5.279056	CCTCCGAACTCCAATATAAGAGACC	60.279	48.000	8.52	0.79	34.13	3.85
904	2774	5.205821	TCCGAACTCCAATATAAGAGACCA	58.794	41.667	8.52	0.00	34.13	4.02
905	2775	5.068723	TCCGAACTCCAATATAAGAGACCAC	59.931	44.000	8.52	0.00	34.13	4.16
906	2776	5.163447	CCGAACTCCAATATAAGAGACCACA	60.163	44.000	8.52	0.00	34.13	4.17
907	2777	5.749109	CGAACTCCAATATAAGAGACCACAC	59.251	44.000	8.52	0.00	34.13	3.82
908	2778	6.620877	AACTCCAATATAAGAGACCACACA	57.379	37.500	8.52	0.00	34.13	3.72
1021	2901	1.448717	GAGGTGAAGAAGAGGGCGC	60.449	63.158	0.00	0.00	0.00	6.53
1191	3097	2.672478	CGACAGCGTTGAGAAGAAGGAT	60.672	50.000	6.16	0.00	0.00	3.24
1194	3100	1.277557	AGCGTTGAGAAGAAGGATGCT	59.722	47.619	0.00	0.00	0.00	3.79
1201	3107	0.176680	GAAGAAGGATGCTCTCGCCA	59.823	55.000	0.00	0.00	34.43	5.69
1215	3121	0.179936	TCGCCACATGCATCATGGTA	59.820	50.000	22.09	11.85	45.16	3.25
1341	3299	4.371786	TCTCCTGAACATCGATGCAATAC	58.628	43.478	25.11	12.04	0.00	1.89
1429	3390	3.679502	GGCCATTTTTGCAGATACACAAC	59.320	43.478	0.00	0.00	0.00	3.32
1437	3398	1.262950	GCAGATACACAACGTGTTGCA	59.737	47.619	12.42	0.00	45.08	4.08
1470	3431	1.903404	GTGCAACAAGAGGTGGGGG	60.903	63.158	0.00	0.00	36.32	5.40
1471	3432	2.991540	GCAACAAGAGGTGGGGGC	60.992	66.667	0.00	0.00	0.00	5.80
1472	3433	2.672996	CAACAAGAGGTGGGGGCG	60.673	66.667	0.00	0.00	0.00	6.13
1473	3434	3.175710	AACAAGAGGTGGGGGCGT	61.176	61.111	0.00	0.00	0.00	5.68
1474	3435	3.491598	AACAAGAGGTGGGGGCGTG	62.492	63.158	0.00	0.00	0.00	5.34
1475	3436	4.722700	CAAGAGGTGGGGGCGTGG	62.723	72.222	0.00	0.00	0.00	4.94
2019	4156	7.772332	ATAAGCGATTAATTCCTATAAGCCG	57.228	36.000	0.00	0.00	0.00	5.52
2028	4165	1.066605	TCCTATAAGCCGACTTCACGC	59.933	52.381	0.00	0.00	37.33	5.34
2039	4176	0.603569	ACTTCACGCCTGACTAGTGG	59.396	55.000	0.00	0.00	36.60	4.00
2148	4303	1.035932	GCAGGGCAATCACAGCATCT	61.036	55.000	0.00	0.00	0.00	2.90
2332	4493	8.619683	AGGTAATTTATAGTGTAGTGACCCTT	57.380	34.615	0.00	0.00	0.00	3.95
2439	4601	7.340487	GGTTCATGGAGTAGGAAATCAGAAATT	59.660	37.037	0.00	0.00	29.85	1.82
2464	4626	8.633075	TTCAAAGTTTTGTTTCTAGCTCATTG	57.367	30.769	0.00	0.00	39.18	2.82

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
8	9	9.743057	TCGCAAAAAGAAGATAAAGAATTTTGA	57.257	25.926	11.08	0.00	40.09	2.69
99	101	3.252944	TGCTTTCGTTGAGATTCATGCAA	59.747	39.130	0.00	0.00	0.00	4.08
126	128	4.561500	TCTGACCGGTGAATTTTGGATA	57.438	40.909	14.63	0.00	0.00	2.59
129	131	2.030274	GGTTCTGACCGGTGAATTTTGG	60.030	50.000	14.63	0.00	35.91	3.28
216	218	2.193127	TCCTGTTGTACTATGTGGGGG	58.807	52.381	0.00	0.00	0.00	5.40
223	225	8.514330	TTTCTTTTGTGTTCCTGTTGTACTAT	57.486	30.769	0.00	0.00	0.00	2.12
234	236	4.099380	TCACCGTTTTCTTTTGTGTTCC	57.901	40.909	0.00	0.00	0.00	3.62
239	241	5.184287	TCCTCTTTTCACCGTTTTCTTTTGT	59.816	36.000	0.00	0.00	0.00	2.83
240	242	5.646606	TCCTCTTTTCACCGTTTTCTTTTG	58.353	37.500	0.00	0.00	0.00	2.44
241	243	5.907866	TCCTCTTTTCACCGTTTTCTTTT	57.092	34.783	0.00	0.00	0.00	2.27
281	283	9.167311	GTTAGTACCATTCAATTGATCTCTTGT	57.833	33.333	9.40	4.23	0.00	3.16
298	300	6.472887	AGCTTGCTTCAATTAGTTAGTACCA	58.527	36.000	0.00	0.00	0.00	3.25
352	354	4.703575	TGCAGGTATCTACAGTTACGTTCT	59.296	41.667	0.00	0.00	0.00	3.01
500	502	3.305064	GCCGGAGCTTTTCACACAATTTA	60.305	43.478	5.05	0.00	35.50	1.40
576	578	3.578282	TCTTTCTACATCAGCACAGGTCA	59.422	43.478	0.00	0.00	0.00	4.02
608	2463	8.924511	TCATCTTTCTATTTTCCTTGTGAAGT	57.075	30.769	0.00	0.00	33.63	3.01
642	2497	5.810587	GGATCTTACACGAATTAGACAAGCA	59.189	40.000	0.00	0.00	0.00	3.91
684	2539	7.808672	ACACGAATTAATTTCCGTTGACAATA	58.191	30.769	11.09	0.00	0.00	1.90
685	2540	6.674066	ACACGAATTAATTTCCGTTGACAAT	58.326	32.000	11.09	0.00	0.00	2.71
687	2542	5.334260	GGACACGAATTAATTTCCGTTGACA	60.334	40.000	11.09	0.00	0.00	3.58
688	2543	5.084055	GGACACGAATTAATTTCCGTTGAC	58.916	41.667	11.09	8.14	0.00	3.18
689	2544	4.998672	AGGACACGAATTAATTTCCGTTGA	59.001	37.500	11.09	0.00	0.00	3.18
695	2550	6.663944	ACTAGCAGGACACGAATTAATTTC	57.336	37.500	1.43	0.00	0.00	2.17
698	2553	6.757010	CACTTACTAGCAGGACACGAATTAAT	59.243	38.462	0.00	0.00	0.00	1.40
699	2554	6.097356	CACTTACTAGCAGGACACGAATTAA	58.903	40.000	0.00	0.00	0.00	1.40
701	2556	4.495422	CACTTACTAGCAGGACACGAATT	58.505	43.478	0.00	0.00	0.00	2.17
702	2557	3.119101	CCACTTACTAGCAGGACACGAAT	60.119	47.826	0.00	0.00	0.00	3.34
703	2558	2.230508	CCACTTACTAGCAGGACACGAA	59.769	50.000	0.00	0.00	0.00	3.85
704	2559	1.816835	CCACTTACTAGCAGGACACGA	59.183	52.381	0.00	0.00	0.00	4.35
705	2560	1.736032	GCCACTTACTAGCAGGACACG	60.736	57.143	0.00	0.00	0.00	4.49
706	2561	1.275291	TGCCACTTACTAGCAGGACAC	59.725	52.381	0.00	0.00	31.65	3.67
707	2562	1.639722	TGCCACTTACTAGCAGGACA	58.360	50.000	0.00	0.00	31.65	4.02
712	2567	1.480954	GCCTACTGCCACTTACTAGCA	59.519	52.381	0.00	0.00	34.79	3.49
740	2595	9.632807	TTTTCCAATGTATTAATTTCCTGAACG	57.367	29.630	0.00	0.00	0.00	3.95
778	2634	2.288395	CCACAAATTCAGGTTGGAGTGC	60.288	50.000	0.00	0.00	0.00	4.40
793	2649	4.378774	CAGCAAATCAAATGACCCACAAA	58.621	39.130	0.00	0.00	0.00	2.83
883	2739	5.749109	GTGTGGTCTCTTATATTGGAGTTCG	59.251	44.000	5.08	0.00	0.00	3.95
897	2767	2.560542	GTCAGTCAGATGTGTGGTCTCT	59.439	50.000	0.00	0.00	0.00	3.10
898	2768	2.560542	AGTCAGTCAGATGTGTGGTCTC	59.439	50.000	0.00	0.00	0.00	3.36
899	2769	2.603021	AGTCAGTCAGATGTGTGGTCT	58.397	47.619	0.00	0.00	0.00	3.85
900	2770	4.218635	TCTTAGTCAGTCAGATGTGTGGTC	59.781	45.833	0.00	0.00	0.00	4.02
901	2771	4.152647	TCTTAGTCAGTCAGATGTGTGGT	58.847	43.478	0.00	0.00	0.00	4.16
902	2772	4.460731	TCTCTTAGTCAGTCAGATGTGTGG	59.539	45.833	0.00	0.00	0.00	4.17
903	2773	5.635417	TCTCTTAGTCAGTCAGATGTGTG	57.365	43.478	0.00	0.00	0.00	3.82
904	2774	4.157656	GCTCTCTTAGTCAGTCAGATGTGT	59.842	45.833	0.00	0.00	0.00	3.72
905	2775	4.439974	GGCTCTCTTAGTCAGTCAGATGTG	60.440	50.000	0.00	0.00	0.00	3.21
906	2776	3.699038	GGCTCTCTTAGTCAGTCAGATGT	59.301	47.826	0.00	0.00	0.00	3.06
907	2777	3.698539	TGGCTCTCTTAGTCAGTCAGATG	59.301	47.826	0.00	0.00	33.94	2.90
908	2778	3.699038	GTGGCTCTCTTAGTCAGTCAGAT	59.301	47.826	0.00	0.00	41.56	2.90
1021	2901	3.751246	CAGCGTGGCAATGGTGGG	61.751	66.667	4.46	0.00	37.20	4.61
1215	3121	1.153289	GATGGAGTCCGTGCTGCAT	60.153	57.895	9.16	9.52	41.00	3.96
1429	3390	3.865164	TCAGCTATACAATCTGCAACACG	59.135	43.478	0.00	0.00	0.00	4.49
1437	3398	5.089970	TGTTGCACTCAGCTATACAATCT	57.910	39.130	0.00	0.00	45.94	2.40
1470	3431	0.528249	CATTAATTGCTGCCCCACGC	60.528	55.000	0.00	0.00	38.31	5.34
1471	3432	3.646650	CATTAATTGCTGCCCCACG	57.353	52.632	0.00	0.00	0.00	4.94
1477	3438	7.606925	GAAGGTTACTTGGCATTAATTGCTGC	61.607	42.308	5.70	5.70	43.50	5.25
1480	3441	5.719173	TGAAGGTTACTTGGCATTAATTGC	58.281	37.500	0.00	0.00	43.36	3.56
2019	4156	1.402984	CCACTAGTCAGGCGTGAAGTC	60.403	57.143	11.28	0.00	33.27	3.01
2028	4165	5.882040	TCTATGTAGGATCCACTAGTCAGG	58.118	45.833	15.82	0.00	0.00	3.86
2039	4176	6.937465	GGAAAATTCACCCTCTATGTAGGATC	59.063	42.308	0.00	0.00	39.15	3.36
2148	4303	1.827344	TGGCACACATTTGGTTTGACA	59.173	42.857	0.00	0.00	42.82	3.58
2316	4477	2.834113	AGCCAAGGGTCACTACACTAT	58.166	47.619	0.00	0.00	38.90	2.12
2332	4493	8.988546	TGCCAATAAAGTAATAATAGAAGCCA	57.011	30.769	0.00	0.00	0.00	4.75
2360	4521	8.367660	TCTATTAGGACCAGATATAGCCAAAG	57.632	38.462	0.00	0.00	0.00	2.77
2388	4549	5.829924	CCTTGTATGCCCACTGATCTTTTAT	59.170	40.000	0.00	0.00	0.00	1.40
2401	4562	1.402787	CATGAACCCCTTGTATGCCC	58.597	55.000	0.00	0.00	0.00	5.36
2439	4601	8.250332	ACAATGAGCTAGAAACAAAACTTTGAA	58.750	29.630	9.12	0.00	40.55	2.69
2464	4626	7.357613	GCTTCTGCATTTAAAAAGAAGAACGAC	60.358	37.037	26.74	14.26	45.53	4.34

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.