Multiple sequence alignment - TraesCS6D01G056000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G056000 chr6D 100.000 2876 0 0 1 2876 26762425 26759550 0.000000e+00 5312.0
1 TraesCS6D01G056000 chr6D 90.968 465 31 9 2417 2876 27027227 27026769 1.460000e-172 616.0
2 TraesCS6D01G056000 chr6D 81.789 626 109 3 1362 1986 27028215 27027594 1.180000e-143 520.0
3 TraesCS6D01G056000 chr6D 78.119 553 64 26 866 1373 27030953 27030413 6.020000e-77 298.0
4 TraesCS6D01G056000 chr6D 83.750 320 41 9 479 792 21030863 21031177 2.800000e-75 292.0
5 TraesCS6D01G056000 chr6D 81.461 356 47 14 2279 2624 26405076 26405422 1.020000e-69 274.0
6 TraesCS6D01G056000 chr6D 95.946 74 3 0 1914 1987 26760440 26760367 1.400000e-23 121.0
7 TraesCS6D01G056000 chr6D 95.946 74 3 0 1986 2059 26760512 26760439 1.400000e-23 121.0
8 TraesCS6D01G056000 chr6B 95.429 1772 78 2 1079 2847 48937356 48935585 0.000000e+00 2820.0
9 TraesCS6D01G056000 chr6B 95.157 1590 66 4 881 2461 49554669 49556256 0.000000e+00 2499.0
10 TraesCS6D01G056000 chr6B 95.515 1048 45 2 1801 2847 48979498 48978452 0.000000e+00 1674.0
11 TraesCS6D01G056000 chr6B 95.238 1050 47 1 1801 2847 48872140 48871091 0.000000e+00 1659.0
12 TraesCS6D01G056000 chr6B 95.890 730 30 0 1079 1808 48980400 48979671 0.000000e+00 1182.0
13 TraesCS6D01G056000 chr6B 95.616 730 32 0 1079 1808 48873042 48872313 0.000000e+00 1171.0
14 TraesCS6D01G056000 chr6B 91.304 529 28 13 479 1002 48980911 48980396 0.000000e+00 706.0
15 TraesCS6D01G056000 chr6B 93.382 408 19 3 479 884 48937846 48937445 5.300000e-167 597.0
16 TraesCS6D01G056000 chr6B 94.010 384 16 5 479 860 48873523 48873145 2.490000e-160 575.0
17 TraesCS6D01G056000 chr6B 95.502 289 11 1 479 765 49553863 49554151 7.260000e-126 460.0
18 TraesCS6D01G056000 chr6B 82.353 238 36 4 1989 2224 49328510 49328277 4.860000e-48 202.0
19 TraesCS6D01G056000 chr6B 88.485 165 15 4 1070 1232 60107900 60107738 2.260000e-46 196.0
20 TraesCS6D01G056000 chr6B 80.804 224 31 10 1008 1228 62125645 62125859 6.380000e-37 165.0
21 TraesCS6D01G056000 chr6B 81.347 193 32 3 1052 1243 77764727 77764538 1.380000e-33 154.0
22 TraesCS6D01G056000 chr6B 94.595 74 4 0 1986 2059 48872027 48871954 6.510000e-22 115.0
23 TraesCS6D01G056000 chr6B 93.243 74 5 0 1914 1987 48979313 48979240 3.030000e-20 110.0
24 TraesCS6D01G056000 chr6B 92.208 77 6 0 1911 1987 49555778 49555854 3.030000e-20 110.0
25 TraesCS6D01G056000 chr6A 91.942 757 61 0 1231 1987 28255740 28254984 0.000000e+00 1061.0
26 TraesCS6D01G056000 chr6A 95.070 568 22 3 1986 2548 28255057 28254491 0.000000e+00 889.0
27 TraesCS6D01G056000 chr6A 78.584 1116 171 31 907 1986 28284831 28283748 0.000000e+00 675.0
28 TraesCS6D01G056000 chr6A 97.633 338 8 0 2539 2876 28251958 28251621 5.340000e-162 580.0
29 TraesCS6D01G056000 chr6A 88.937 461 34 7 2417 2876 28283382 28282938 1.160000e-153 553.0
30 TraesCS6D01G056000 chr6A 87.895 380 31 9 511 882 28256108 28255736 1.580000e-117 433.0
31 TraesCS6D01G056000 chr6A 96.465 198 7 0 2679 2876 28239506 28239309 7.680000e-86 327.0
32 TraesCS6D01G056000 chr6A 72.917 336 64 19 2453 2769 33307381 33307708 1.100000e-14 91.6
33 TraesCS6D01G056000 chr5D 96.715 487 12 1 1 483 564953485 564952999 0.000000e+00 808.0
34 TraesCS6D01G056000 chr5D 96.687 483 12 1 1 479 1590660 1591142 0.000000e+00 800.0
35 TraesCS6D01G056000 chr3D 96.894 483 11 1 1 479 419147744 419148226 0.000000e+00 806.0
36 TraesCS6D01G056000 chr3D 96.687 483 12 1 1 479 580056784 580057266 0.000000e+00 800.0
37 TraesCS6D01G056000 chr3D 96.687 483 10 3 1 479 545046512 545046992 0.000000e+00 798.0
38 TraesCS6D01G056000 chr3D 96.311 488 13 4 1 484 571842070 571842556 0.000000e+00 797.0
39 TraesCS6D01G056000 chr2D 96.334 491 13 2 1 486 626826728 626827218 0.000000e+00 802.0
40 TraesCS6D01G056000 chr1D 96.687 483 12 1 1 479 66243238 66242756 0.000000e+00 800.0
41 TraesCS6D01G056000 chr1D 96.480 483 13 1 1 479 71590622 71591104 0.000000e+00 795.0
42 TraesCS6D01G056000 chr4D 75.427 293 45 16 2344 2613 5545221 5544933 1.810000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G056000 chr6D 26759550 26762425 2875 True 1851.333333 5312 97.297333 1 2876 3 chr6D.!!$R1 2875
1 TraesCS6D01G056000 chr6D 27026769 27030953 4184 True 478.000000 616 83.625333 866 2876 3 chr6D.!!$R2 2010
2 TraesCS6D01G056000 chr6B 48935585 48937846 2261 True 1708.500000 2820 94.405500 479 2847 2 chr6B.!!$R5 2368
3 TraesCS6D01G056000 chr6B 49553863 49556256 2393 False 1023.000000 2499 94.289000 479 2461 3 chr6B.!!$F2 1982
4 TraesCS6D01G056000 chr6B 48978452 48980911 2459 True 918.000000 1674 93.988000 479 2847 4 chr6B.!!$R6 2368
5 TraesCS6D01G056000 chr6B 48871091 48873523 2432 True 880.000000 1659 94.864750 479 2847 4 chr6B.!!$R4 2368
6 TraesCS6D01G056000 chr6A 28251621 28256108 4487 True 740.750000 1061 93.135000 511 2876 4 chr6A.!!$R2 2365
7 TraesCS6D01G056000 chr6A 28282938 28284831 1893 True 614.000000 675 83.760500 907 2876 2 chr6A.!!$R3 1969

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 451 0.035439 CGGGACTAATGTGTTGCCCT 60.035 55.0 0.00 0.0 33.37 5.19 F
457 458 0.106268 AATGTGTTGCCCTGTGACCA 60.106 50.0 0.00 0.0 0.00 4.02 F
458 459 0.106268 ATGTGTTGCCCTGTGACCAA 60.106 50.0 0.00 0.0 0.00 3.67 F
1803 4485 0.036164 ATCGTGTGCCAGCAAACCTA 59.964 50.0 7.36 0.0 30.67 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1313 1763 0.107459 GAGGATCTGGTGGTTCTGGC 60.107 60.000 0.00 0.00 0.0 4.85 R
1803 4485 0.178964 CATGGTCTTTGGGGTGGTGT 60.179 55.000 0.00 0.00 0.0 4.16 R
1868 4730 1.540435 TACATGGCAGCCTCACACGA 61.540 55.000 14.15 0.00 0.0 4.35 R
2769 8206 1.153025 GATCAGCAGCATCTGGCCA 60.153 57.895 4.71 4.71 46.5 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.709386 AATAAACATAGATGCGCTTATAGAGG 57.291 34.615 9.73 0.99 0.00 3.69
41 42 5.984695 AACATAGATGCGCTTATAGAGGA 57.015 39.130 9.73 0.00 0.00 3.71
42 43 5.984695 ACATAGATGCGCTTATAGAGGAA 57.015 39.130 9.73 0.00 0.00 3.36
43 44 6.346477 ACATAGATGCGCTTATAGAGGAAA 57.654 37.500 9.73 0.00 0.00 3.13
44 45 6.940739 ACATAGATGCGCTTATAGAGGAAAT 58.059 36.000 9.73 0.00 0.00 2.17
45 46 7.390027 ACATAGATGCGCTTATAGAGGAAATT 58.610 34.615 9.73 0.00 0.00 1.82
46 47 7.547370 ACATAGATGCGCTTATAGAGGAAATTC 59.453 37.037 9.73 0.00 0.00 2.17
47 48 5.858381 AGATGCGCTTATAGAGGAAATTCA 58.142 37.500 9.73 0.00 0.00 2.57
48 49 6.291377 AGATGCGCTTATAGAGGAAATTCAA 58.709 36.000 9.73 0.00 0.00 2.69
49 50 5.734855 TGCGCTTATAGAGGAAATTCAAC 57.265 39.130 9.73 0.00 0.00 3.18
50 51 4.574828 TGCGCTTATAGAGGAAATTCAACC 59.425 41.667 9.73 0.00 0.00 3.77
51 52 4.816925 GCGCTTATAGAGGAAATTCAACCT 59.183 41.667 0.00 0.00 39.41 3.50
52 53 5.989777 GCGCTTATAGAGGAAATTCAACCTA 59.010 40.000 0.00 0.00 36.57 3.08
53 54 6.482308 GCGCTTATAGAGGAAATTCAACCTAA 59.518 38.462 0.00 0.00 36.57 2.69
54 55 7.012044 GCGCTTATAGAGGAAATTCAACCTAAA 59.988 37.037 0.00 0.00 36.57 1.85
55 56 9.057089 CGCTTATAGAGGAAATTCAACCTAAAT 57.943 33.333 0.00 0.00 36.57 1.40
113 114 9.877222 ATTTAGGTAAAATTCCCTGTATAAGGG 57.123 33.333 3.87 3.87 46.74 3.95
126 127 7.440523 CCTGTATAAGGGCATCTATTTTCAC 57.559 40.000 0.00 0.00 43.15 3.18
127 128 7.227156 CCTGTATAAGGGCATCTATTTTCACT 58.773 38.462 0.00 0.00 43.15 3.41
128 129 7.721399 CCTGTATAAGGGCATCTATTTTCACTT 59.279 37.037 0.00 0.00 43.15 3.16
129 130 9.125026 CTGTATAAGGGCATCTATTTTCACTTT 57.875 33.333 0.00 0.00 0.00 2.66
133 134 9.920946 ATAAGGGCATCTATTTTCACTTTAAGA 57.079 29.630 0.00 0.00 0.00 2.10
134 135 7.872113 AGGGCATCTATTTTCACTTTAAGAG 57.128 36.000 0.00 0.00 0.00 2.85
135 136 6.830838 AGGGCATCTATTTTCACTTTAAGAGG 59.169 38.462 0.00 0.00 0.00 3.69
136 137 6.828785 GGGCATCTATTTTCACTTTAAGAGGA 59.171 38.462 0.00 0.00 0.00 3.71
137 138 7.012799 GGGCATCTATTTTCACTTTAAGAGGAG 59.987 40.741 0.00 0.00 0.00 3.69
138 139 7.413644 GCATCTATTTTCACTTTAAGAGGAGC 58.586 38.462 0.00 0.00 0.00 4.70
139 140 7.281999 GCATCTATTTTCACTTTAAGAGGAGCT 59.718 37.037 0.00 0.00 0.00 4.09
140 141 8.825745 CATCTATTTTCACTTTAAGAGGAGCTC 58.174 37.037 4.71 4.71 0.00 4.09
141 142 7.907389 TCTATTTTCACTTTAAGAGGAGCTCA 58.093 34.615 17.19 0.00 32.06 4.26
142 143 8.375506 TCTATTTTCACTTTAAGAGGAGCTCAA 58.624 33.333 17.19 0.00 32.06 3.02
143 144 6.619801 TTTTCACTTTAAGAGGAGCTCAAC 57.380 37.500 17.19 8.65 32.06 3.18
144 145 4.955811 TCACTTTAAGAGGAGCTCAACA 57.044 40.909 17.19 0.00 32.06 3.33
145 146 5.290493 TCACTTTAAGAGGAGCTCAACAA 57.710 39.130 17.19 0.00 32.06 2.83
146 147 5.300752 TCACTTTAAGAGGAGCTCAACAAG 58.699 41.667 17.19 10.30 32.06 3.16
147 148 4.453819 CACTTTAAGAGGAGCTCAACAAGG 59.546 45.833 17.19 4.91 32.06 3.61
148 149 2.770164 TAAGAGGAGCTCAACAAGGC 57.230 50.000 17.19 0.00 32.06 4.35
149 150 0.767375 AAGAGGAGCTCAACAAGGCA 59.233 50.000 17.19 0.00 32.06 4.75
150 151 0.324285 AGAGGAGCTCAACAAGGCAG 59.676 55.000 17.19 0.00 32.06 4.85
151 152 0.322975 GAGGAGCTCAACAAGGCAGA 59.677 55.000 17.19 0.00 0.00 4.26
152 153 0.324285 AGGAGCTCAACAAGGCAGAG 59.676 55.000 17.19 0.00 0.00 3.35
153 154 0.322975 GGAGCTCAACAAGGCAGAGA 59.677 55.000 17.19 0.00 0.00 3.10
154 155 1.675415 GGAGCTCAACAAGGCAGAGAG 60.675 57.143 17.19 0.00 0.00 3.20
155 156 0.324285 AGCTCAACAAGGCAGAGAGG 59.676 55.000 0.00 0.00 0.00 3.69
156 157 0.676151 GCTCAACAAGGCAGAGAGGG 60.676 60.000 0.00 0.00 0.00 4.30
157 158 0.979665 CTCAACAAGGCAGAGAGGGA 59.020 55.000 0.00 0.00 0.00 4.20
158 159 0.687354 TCAACAAGGCAGAGAGGGAC 59.313 55.000 0.00 0.00 0.00 4.46
159 160 0.671781 CAACAAGGCAGAGAGGGACG 60.672 60.000 0.00 0.00 0.00 4.79
160 161 1.831652 AACAAGGCAGAGAGGGACGG 61.832 60.000 0.00 0.00 0.00 4.79
161 162 2.685380 AAGGCAGAGAGGGACGGG 60.685 66.667 0.00 0.00 0.00 5.28
164 165 3.394836 GCAGAGAGGGACGGGCTT 61.395 66.667 0.00 0.00 0.00 4.35
165 166 2.058595 GCAGAGAGGGACGGGCTTA 61.059 63.158 0.00 0.00 0.00 3.09
166 167 1.403687 GCAGAGAGGGACGGGCTTAT 61.404 60.000 0.00 0.00 0.00 1.73
167 168 1.996798 CAGAGAGGGACGGGCTTATA 58.003 55.000 0.00 0.00 0.00 0.98
168 169 2.317040 CAGAGAGGGACGGGCTTATAA 58.683 52.381 0.00 0.00 0.00 0.98
169 170 2.698797 CAGAGAGGGACGGGCTTATAAA 59.301 50.000 0.00 0.00 0.00 1.40
170 171 2.699321 AGAGAGGGACGGGCTTATAAAC 59.301 50.000 0.00 0.00 0.00 2.01
171 172 2.699321 GAGAGGGACGGGCTTATAAACT 59.301 50.000 0.00 0.00 0.00 2.66
172 173 2.434702 AGAGGGACGGGCTTATAAACTG 59.565 50.000 0.00 0.00 0.00 3.16
173 174 1.489230 AGGGACGGGCTTATAAACTGG 59.511 52.381 0.00 0.00 0.00 4.00
174 175 1.211212 GGGACGGGCTTATAAACTGGT 59.789 52.381 0.00 0.00 0.00 4.00
175 176 2.285977 GGACGGGCTTATAAACTGGTG 58.714 52.381 0.00 0.00 0.00 4.17
176 177 2.355412 GGACGGGCTTATAAACTGGTGT 60.355 50.000 0.00 0.00 0.00 4.16
177 178 2.676342 GACGGGCTTATAAACTGGTGTG 59.324 50.000 0.00 0.00 0.00 3.82
178 179 2.303600 ACGGGCTTATAAACTGGTGTGA 59.696 45.455 0.00 0.00 0.00 3.58
179 180 2.936498 CGGGCTTATAAACTGGTGTGAG 59.064 50.000 0.00 0.00 0.00 3.51
180 181 2.683362 GGGCTTATAAACTGGTGTGAGC 59.317 50.000 0.00 0.00 0.00 4.26
181 182 2.351726 GGCTTATAAACTGGTGTGAGCG 59.648 50.000 0.00 0.00 0.00 5.03
182 183 2.223044 GCTTATAAACTGGTGTGAGCGC 60.223 50.000 0.00 0.00 0.00 5.92
183 184 2.018542 TATAAACTGGTGTGAGCGCC 57.981 50.000 2.29 0.00 45.23 6.53
184 185 0.676782 ATAAACTGGTGTGAGCGCCC 60.677 55.000 2.29 0.00 44.42 6.13
185 186 1.764571 TAAACTGGTGTGAGCGCCCT 61.765 55.000 2.29 0.00 44.42 5.19
186 187 2.624674 AAACTGGTGTGAGCGCCCTT 62.625 55.000 2.29 0.00 44.42 3.95
187 188 2.743928 CTGGTGTGAGCGCCCTTC 60.744 66.667 2.29 0.00 44.42 3.46
188 189 4.680237 TGGTGTGAGCGCCCTTCG 62.680 66.667 2.29 0.00 44.42 3.79
199 200 4.016706 CCCTTCGGTTGGCGAGGT 62.017 66.667 0.00 0.00 0.00 3.85
200 201 2.742372 CCTTCGGTTGGCGAGGTG 60.742 66.667 0.00 0.00 0.00 4.00
201 202 2.742372 CTTCGGTTGGCGAGGTGG 60.742 66.667 0.00 0.00 0.00 4.61
202 203 4.323477 TTCGGTTGGCGAGGTGGG 62.323 66.667 0.00 0.00 0.00 4.61
205 206 3.637273 GGTTGGCGAGGTGGGACT 61.637 66.667 0.00 0.00 0.00 3.85
206 207 2.288025 GGTTGGCGAGGTGGGACTA 61.288 63.158 0.00 0.00 0.00 2.59
207 208 1.675219 GTTGGCGAGGTGGGACTAA 59.325 57.895 0.00 0.00 0.00 2.24
208 209 0.035739 GTTGGCGAGGTGGGACTAAA 59.964 55.000 0.00 0.00 0.00 1.85
209 210 0.035739 TTGGCGAGGTGGGACTAAAC 59.964 55.000 0.00 0.00 0.00 2.01
210 211 1.122632 TGGCGAGGTGGGACTAAACA 61.123 55.000 0.00 0.00 0.00 2.83
211 212 0.672711 GGCGAGGTGGGACTAAACAC 60.673 60.000 0.00 0.00 36.89 3.32
212 213 0.320697 GCGAGGTGGGACTAAACACT 59.679 55.000 0.00 0.00 37.72 3.55
213 214 1.939838 GCGAGGTGGGACTAAACACTG 60.940 57.143 0.00 0.00 37.72 3.66
214 215 1.337823 CGAGGTGGGACTAAACACTGG 60.338 57.143 0.00 0.00 37.72 4.00
215 216 0.400594 AGGTGGGACTAAACACTGGC 59.599 55.000 0.00 0.00 37.72 4.85
216 217 0.608308 GGTGGGACTAAACACTGGCC 60.608 60.000 0.00 0.00 37.72 5.36
217 218 0.953960 GTGGGACTAAACACTGGCCG 60.954 60.000 0.00 0.00 34.84 6.13
218 219 2.038837 GGGACTAAACACTGGCCGC 61.039 63.158 0.00 0.00 0.00 6.53
219 220 1.302192 GGACTAAACACTGGCCGCA 60.302 57.895 0.00 0.00 0.00 5.69
220 221 0.887387 GGACTAAACACTGGCCGCAA 60.887 55.000 0.00 0.00 0.00 4.85
221 222 0.237498 GACTAAACACTGGCCGCAAC 59.763 55.000 0.00 0.00 0.00 4.17
222 223 0.179029 ACTAAACACTGGCCGCAACT 60.179 50.000 0.00 0.00 0.00 3.16
223 224 1.071071 ACTAAACACTGGCCGCAACTA 59.929 47.619 0.00 0.00 0.00 2.24
224 225 1.732259 CTAAACACTGGCCGCAACTAG 59.268 52.381 0.00 0.00 0.00 2.57
225 226 0.889186 AAACACTGGCCGCAACTAGG 60.889 55.000 0.00 0.00 0.00 3.02
226 227 1.764571 AACACTGGCCGCAACTAGGA 61.765 55.000 0.00 0.00 0.00 2.94
227 228 1.741770 CACTGGCCGCAACTAGGAC 60.742 63.158 0.00 0.00 37.28 3.85
228 229 2.125106 CTGGCCGCAACTAGGACC 60.125 66.667 0.00 0.00 35.39 4.46
229 230 2.925706 TGGCCGCAACTAGGACCA 60.926 61.111 0.00 0.00 35.39 4.02
230 231 2.125106 GGCCGCAACTAGGACCAG 60.125 66.667 0.00 0.00 0.00 4.00
231 232 2.820037 GCCGCAACTAGGACCAGC 60.820 66.667 0.00 0.00 0.00 4.85
232 233 2.125106 CCGCAACTAGGACCAGCC 60.125 66.667 0.00 0.00 0.00 4.85
233 234 2.125106 CGCAACTAGGACCAGCCC 60.125 66.667 0.00 0.00 37.37 5.19
234 235 2.660064 CGCAACTAGGACCAGCCCT 61.660 63.158 0.00 0.00 40.29 5.19
235 236 1.685820 GCAACTAGGACCAGCCCTT 59.314 57.895 0.00 0.00 37.74 3.95
236 237 0.038310 GCAACTAGGACCAGCCCTTT 59.962 55.000 0.00 0.00 37.74 3.11
237 238 1.280998 GCAACTAGGACCAGCCCTTTA 59.719 52.381 0.00 0.00 37.74 1.85
238 239 2.681097 GCAACTAGGACCAGCCCTTTAG 60.681 54.545 0.00 0.00 37.74 1.85
239 240 2.572104 CAACTAGGACCAGCCCTTTAGT 59.428 50.000 0.00 0.00 37.74 2.24
240 241 2.468915 ACTAGGACCAGCCCTTTAGTC 58.531 52.381 0.00 0.00 37.74 2.59
242 243 1.608154 GGACCAGCCCTTTAGTCCC 59.392 63.158 0.00 0.00 42.49 4.46
243 244 1.221021 GACCAGCCCTTTAGTCCCG 59.779 63.158 0.00 0.00 0.00 5.14
244 245 2.253403 GACCAGCCCTTTAGTCCCGG 62.253 65.000 0.00 0.00 0.00 5.73
245 246 2.298661 CCAGCCCTTTAGTCCCGGT 61.299 63.158 0.00 0.00 0.00 5.28
246 247 1.683441 CAGCCCTTTAGTCCCGGTT 59.317 57.895 0.00 0.00 0.00 4.44
247 248 0.037734 CAGCCCTTTAGTCCCGGTTT 59.962 55.000 0.00 0.00 0.00 3.27
248 249 0.037734 AGCCCTTTAGTCCCGGTTTG 59.962 55.000 0.00 0.00 0.00 2.93
249 250 0.251033 GCCCTTTAGTCCCGGTTTGT 60.251 55.000 0.00 0.00 0.00 2.83
250 251 1.530323 CCCTTTAGTCCCGGTTTGTG 58.470 55.000 0.00 0.00 0.00 3.33
251 252 1.530323 CCTTTAGTCCCGGTTTGTGG 58.470 55.000 0.00 0.00 0.00 4.17
252 253 1.202842 CCTTTAGTCCCGGTTTGTGGT 60.203 52.381 0.00 0.00 0.00 4.16
253 254 2.038820 CCTTTAGTCCCGGTTTGTGGTA 59.961 50.000 0.00 0.00 0.00 3.25
254 255 3.307904 CCTTTAGTCCCGGTTTGTGGTAT 60.308 47.826 0.00 0.00 0.00 2.73
255 256 3.337694 TTAGTCCCGGTTTGTGGTATG 57.662 47.619 0.00 0.00 0.00 2.39
256 257 1.354101 AGTCCCGGTTTGTGGTATGA 58.646 50.000 0.00 0.00 0.00 2.15
257 258 1.700739 AGTCCCGGTTTGTGGTATGAA 59.299 47.619 0.00 0.00 0.00 2.57
258 259 1.808343 GTCCCGGTTTGTGGTATGAAC 59.192 52.381 0.00 0.00 0.00 3.18
259 260 1.170442 CCCGGTTTGTGGTATGAACC 58.830 55.000 0.00 0.00 46.98 3.62
270 271 3.189618 GGTATGAACCGGGACTAAAGG 57.810 52.381 6.32 0.00 35.62 3.11
271 272 2.158856 GGTATGAACCGGGACTAAAGGG 60.159 54.545 6.32 0.00 35.62 3.95
272 273 1.665137 ATGAACCGGGACTAAAGGGT 58.335 50.000 6.32 0.00 0.00 4.34
273 274 0.688487 TGAACCGGGACTAAAGGGTG 59.312 55.000 6.32 0.00 31.96 4.61
274 275 0.035725 GAACCGGGACTAAAGGGTGG 60.036 60.000 6.32 0.00 31.96 4.61
275 276 0.769386 AACCGGGACTAAAGGGTGGT 60.769 55.000 6.32 0.00 31.96 4.16
276 277 1.298667 CCGGGACTAAAGGGTGGTG 59.701 63.158 0.00 0.00 0.00 4.17
277 278 1.298667 CGGGACTAAAGGGTGGTGG 59.701 63.158 0.00 0.00 0.00 4.61
278 279 1.689412 GGGACTAAAGGGTGGTGGG 59.311 63.158 0.00 0.00 0.00 4.61
279 280 1.001269 GGACTAAAGGGTGGTGGGC 60.001 63.158 0.00 0.00 0.00 5.36
280 281 1.001269 GACTAAAGGGTGGTGGGCC 60.001 63.158 0.00 0.00 0.00 5.80
281 282 1.776710 ACTAAAGGGTGGTGGGCCA 60.777 57.895 0.00 0.00 43.73 5.36
296 297 2.361610 CCAGGAGCGTTGCCCATT 60.362 61.111 0.00 0.00 0.00 3.16
297 298 2.703798 CCAGGAGCGTTGCCCATTG 61.704 63.158 0.00 0.00 0.00 2.82
298 299 2.361610 AGGAGCGTTGCCCATTGG 60.362 61.111 0.00 0.00 0.00 3.16
299 300 2.676471 GGAGCGTTGCCCATTGGT 60.676 61.111 1.20 0.00 0.00 3.67
300 301 2.700773 GGAGCGTTGCCCATTGGTC 61.701 63.158 1.20 0.00 0.00 4.02
301 302 2.676471 AGCGTTGCCCATTGGTCC 60.676 61.111 1.20 0.00 0.00 4.46
302 303 3.758931 GCGTTGCCCATTGGTCCC 61.759 66.667 1.20 0.00 0.00 4.46
303 304 3.439540 CGTTGCCCATTGGTCCCG 61.440 66.667 1.20 0.00 0.00 5.14
304 305 3.068064 GTTGCCCATTGGTCCCGG 61.068 66.667 1.20 0.00 0.00 5.73
305 306 3.585428 TTGCCCATTGGTCCCGGT 61.585 61.111 0.00 0.00 0.00 5.28
306 307 3.153629 TTGCCCATTGGTCCCGGTT 62.154 57.895 0.00 0.00 0.00 4.44
307 308 2.283604 GCCCATTGGTCCCGGTTT 60.284 61.111 0.00 0.00 0.00 3.27
308 309 2.645192 GCCCATTGGTCCCGGTTTG 61.645 63.158 0.00 0.00 0.00 2.93
309 310 1.228737 CCCATTGGTCCCGGTTTGT 60.229 57.895 0.00 0.00 0.00 2.83
310 311 1.248101 CCCATTGGTCCCGGTTTGTC 61.248 60.000 0.00 0.00 0.00 3.18
311 312 1.248101 CCATTGGTCCCGGTTTGTCC 61.248 60.000 0.00 0.00 0.00 4.02
312 313 1.076014 ATTGGTCCCGGTTTGTCCC 59.924 57.895 0.00 0.00 0.00 4.46
313 314 1.721093 ATTGGTCCCGGTTTGTCCCA 61.721 55.000 0.00 0.00 0.00 4.37
314 315 2.281970 GGTCCCGGTTTGTCCCAC 60.282 66.667 0.00 0.00 0.00 4.61
315 316 2.281970 GTCCCGGTTTGTCCCACC 60.282 66.667 0.00 0.00 0.00 4.61
316 317 2.773053 TCCCGGTTTGTCCCACCA 60.773 61.111 0.00 0.00 33.36 4.17
317 318 2.196229 CCCGGTTTGTCCCACCAA 59.804 61.111 0.00 0.00 33.36 3.67
318 319 1.228737 CCCGGTTTGTCCCACCAAT 60.229 57.895 0.00 0.00 33.36 3.16
319 320 1.248101 CCCGGTTTGTCCCACCAATC 61.248 60.000 0.00 0.00 33.36 2.67
320 321 1.582610 CCGGTTTGTCCCACCAATCG 61.583 60.000 0.00 0.00 33.36 3.34
321 322 1.582610 CGGTTTGTCCCACCAATCGG 61.583 60.000 0.00 0.00 33.36 4.18
322 323 1.248101 GGTTTGTCCCACCAATCGGG 61.248 60.000 0.00 0.00 46.03 5.14
328 329 4.832741 CCACCAATCGGGACCAAA 57.167 55.556 0.00 0.00 41.15 3.28
329 330 2.566824 CCACCAATCGGGACCAAAG 58.433 57.895 0.00 0.00 41.15 2.77
330 331 0.965363 CCACCAATCGGGACCAAAGG 60.965 60.000 0.00 0.00 41.15 3.11
331 332 0.965363 CACCAATCGGGACCAAAGGG 60.965 60.000 0.00 0.00 41.15 3.95
332 333 1.432023 ACCAATCGGGACCAAAGGGT 61.432 55.000 0.00 0.00 43.36 4.34
341 342 4.783667 CCAAAGGGTCCGAACGAA 57.216 55.556 0.00 0.00 0.00 3.85
342 343 3.243128 CCAAAGGGTCCGAACGAAT 57.757 52.632 0.00 0.00 0.00 3.34
343 344 1.084289 CCAAAGGGTCCGAACGAATC 58.916 55.000 0.00 0.00 0.00 2.52
354 355 0.377203 GAACGAATCGGGACCAATGC 59.623 55.000 7.80 0.00 0.00 3.56
355 356 1.029947 AACGAATCGGGACCAATGCC 61.030 55.000 7.80 0.00 0.00 4.40
356 357 2.186826 CGAATCGGGACCAATGCCC 61.187 63.158 0.00 0.00 42.41 5.36
357 358 1.828224 GAATCGGGACCAATGCCCC 60.828 63.158 0.00 0.00 42.92 5.80
358 359 3.373932 AATCGGGACCAATGCCCCC 62.374 63.158 0.00 1.52 42.92 5.40
362 363 4.041762 GGACCAATGCCCCCACGA 62.042 66.667 0.00 0.00 0.00 4.35
363 364 2.438434 GACCAATGCCCCCACGAG 60.438 66.667 0.00 0.00 0.00 4.18
364 365 3.995506 GACCAATGCCCCCACGAGG 62.996 68.421 0.00 0.00 0.00 4.63
389 390 4.424711 GACCCCTGGCCGCATGAA 62.425 66.667 0.00 0.00 0.00 2.57
390 391 4.740822 ACCCCTGGCCGCATGAAC 62.741 66.667 0.00 0.00 0.00 3.18
398 399 4.402528 CCGCATGAACCGGGACCA 62.403 66.667 6.32 0.00 41.99 4.02
399 400 2.359354 CGCATGAACCGGGACCAA 60.359 61.111 6.32 0.00 0.00 3.67
400 401 1.748879 CGCATGAACCGGGACCAAT 60.749 57.895 6.32 0.00 0.00 3.16
401 402 1.809207 GCATGAACCGGGACCAATG 59.191 57.895 6.32 3.41 0.00 2.82
402 403 1.809207 CATGAACCGGGACCAATGC 59.191 57.895 6.32 0.00 0.00 3.56
403 404 0.680921 CATGAACCGGGACCAATGCT 60.681 55.000 6.32 0.00 0.00 3.79
404 405 0.394352 ATGAACCGGGACCAATGCTC 60.394 55.000 6.32 0.00 0.00 4.26
405 406 1.002624 GAACCGGGACCAATGCTCA 60.003 57.895 6.32 0.00 0.00 4.26
406 407 1.303317 AACCGGGACCAATGCTCAC 60.303 57.895 6.32 0.00 0.00 3.51
407 408 2.063015 AACCGGGACCAATGCTCACA 62.063 55.000 6.32 0.00 0.00 3.58
408 409 1.077501 CCGGGACCAATGCTCACAT 60.078 57.895 0.00 0.00 38.49 3.21
410 411 1.408127 CCGGGACCAATGCTCACATTA 60.408 52.381 0.00 0.00 44.83 1.90
411 412 1.942657 CGGGACCAATGCTCACATTAG 59.057 52.381 0.00 0.00 44.83 1.73
412 413 2.680805 CGGGACCAATGCTCACATTAGT 60.681 50.000 0.00 0.00 44.83 2.24
415 416 2.945668 GACCAATGCTCACATTAGTCCC 59.054 50.000 6.20 0.00 44.37 4.46
416 417 2.308570 ACCAATGCTCACATTAGTCCCA 59.691 45.455 0.00 0.00 44.83 4.37
417 418 2.947652 CCAATGCTCACATTAGTCCCAG 59.052 50.000 0.00 0.00 44.83 4.45
418 419 3.614092 CAATGCTCACATTAGTCCCAGT 58.386 45.455 0.00 0.00 44.83 4.00
419 420 4.012374 CAATGCTCACATTAGTCCCAGTT 58.988 43.478 0.00 0.00 44.83 3.16
420 421 3.334583 TGCTCACATTAGTCCCAGTTC 57.665 47.619 0.00 0.00 0.00 3.01
421 422 2.271800 GCTCACATTAGTCCCAGTTCG 58.728 52.381 0.00 0.00 0.00 3.95
422 423 2.353803 GCTCACATTAGTCCCAGTTCGT 60.354 50.000 0.00 0.00 0.00 3.85
423 424 3.254060 CTCACATTAGTCCCAGTTCGTG 58.746 50.000 0.00 0.00 0.00 4.35
424 425 2.894765 TCACATTAGTCCCAGTTCGTGA 59.105 45.455 0.00 0.00 0.00 4.35
425 426 2.993899 CACATTAGTCCCAGTTCGTGAC 59.006 50.000 0.00 0.00 0.00 3.67
426 427 2.897969 ACATTAGTCCCAGTTCGTGACT 59.102 45.455 0.00 0.00 41.88 3.41
434 435 3.946907 GTTCGTGACTGAACCGGG 58.053 61.111 6.32 0.00 41.88 5.73
435 436 1.364901 GTTCGTGACTGAACCGGGA 59.635 57.895 6.32 0.00 41.88 5.14
436 437 0.942884 GTTCGTGACTGAACCGGGAC 60.943 60.000 6.32 0.00 41.88 4.46
437 438 1.111116 TTCGTGACTGAACCGGGACT 61.111 55.000 6.32 0.00 0.00 3.85
438 439 0.250858 TCGTGACTGAACCGGGACTA 60.251 55.000 6.32 0.00 0.00 2.59
439 440 0.599558 CGTGACTGAACCGGGACTAA 59.400 55.000 6.32 0.00 0.00 2.24
440 441 1.203994 CGTGACTGAACCGGGACTAAT 59.796 52.381 6.32 0.00 0.00 1.73
441 442 2.618053 GTGACTGAACCGGGACTAATG 58.382 52.381 6.32 0.00 0.00 1.90
442 443 2.028385 GTGACTGAACCGGGACTAATGT 60.028 50.000 6.32 0.00 0.00 2.71
443 444 2.028476 TGACTGAACCGGGACTAATGTG 60.028 50.000 6.32 0.00 0.00 3.21
444 445 1.975680 ACTGAACCGGGACTAATGTGT 59.024 47.619 6.32 0.00 0.00 3.72
445 446 2.370849 ACTGAACCGGGACTAATGTGTT 59.629 45.455 6.32 0.00 0.00 3.32
446 447 2.742053 CTGAACCGGGACTAATGTGTTG 59.258 50.000 6.32 0.00 0.00 3.33
447 448 1.467342 GAACCGGGACTAATGTGTTGC 59.533 52.381 6.32 0.00 0.00 4.17
448 449 0.322187 ACCGGGACTAATGTGTTGCC 60.322 55.000 6.32 0.00 0.00 4.52
449 450 1.029947 CCGGGACTAATGTGTTGCCC 61.030 60.000 0.00 0.00 0.00 5.36
450 451 0.035439 CGGGACTAATGTGTTGCCCT 60.035 55.000 0.00 0.00 33.37 5.19
451 452 1.463674 GGGACTAATGTGTTGCCCTG 58.536 55.000 0.00 0.00 32.78 4.45
452 453 1.271926 GGGACTAATGTGTTGCCCTGT 60.272 52.381 0.00 0.00 32.78 4.00
453 454 1.812571 GGACTAATGTGTTGCCCTGTG 59.187 52.381 0.00 0.00 0.00 3.66
454 455 2.552155 GGACTAATGTGTTGCCCTGTGA 60.552 50.000 0.00 0.00 0.00 3.58
455 456 2.484264 GACTAATGTGTTGCCCTGTGAC 59.516 50.000 0.00 0.00 0.00 3.67
456 457 1.812571 CTAATGTGTTGCCCTGTGACC 59.187 52.381 0.00 0.00 0.00 4.02
457 458 0.106268 AATGTGTTGCCCTGTGACCA 60.106 50.000 0.00 0.00 0.00 4.02
458 459 0.106268 ATGTGTTGCCCTGTGACCAA 60.106 50.000 0.00 0.00 0.00 3.67
459 460 0.323816 TGTGTTGCCCTGTGACCAAA 60.324 50.000 0.00 0.00 0.00 3.28
460 461 0.385390 GTGTTGCCCTGTGACCAAAG 59.615 55.000 0.00 0.00 0.00 2.77
461 462 1.363807 GTTGCCCTGTGACCAAAGC 59.636 57.895 0.00 0.00 0.00 3.51
462 463 1.832167 TTGCCCTGTGACCAAAGCC 60.832 57.895 0.00 0.00 0.00 4.35
463 464 2.991540 GCCCTGTGACCAAAGCCC 60.992 66.667 0.00 0.00 0.00 5.19
464 465 2.520458 CCCTGTGACCAAAGCCCA 59.480 61.111 0.00 0.00 0.00 5.36
465 466 1.604593 CCCTGTGACCAAAGCCCAG 60.605 63.158 0.00 0.00 0.00 4.45
466 467 1.151450 CCTGTGACCAAAGCCCAGT 59.849 57.895 0.00 0.00 0.00 4.00
467 468 0.468029 CCTGTGACCAAAGCCCAGTT 60.468 55.000 0.00 0.00 0.00 3.16
468 469 1.402787 CTGTGACCAAAGCCCAGTTT 58.597 50.000 0.00 0.00 0.00 2.66
469 470 1.756538 CTGTGACCAAAGCCCAGTTTT 59.243 47.619 0.00 0.00 0.00 2.43
470 471 1.754226 TGTGACCAAAGCCCAGTTTTC 59.246 47.619 0.00 0.00 0.00 2.29
471 472 2.031870 GTGACCAAAGCCCAGTTTTCT 58.968 47.619 0.00 0.00 0.00 2.52
472 473 3.219281 GTGACCAAAGCCCAGTTTTCTA 58.781 45.455 0.00 0.00 0.00 2.10
473 474 3.826729 GTGACCAAAGCCCAGTTTTCTAT 59.173 43.478 0.00 0.00 0.00 1.98
474 475 4.280929 GTGACCAAAGCCCAGTTTTCTATT 59.719 41.667 0.00 0.00 0.00 1.73
475 476 5.475564 GTGACCAAAGCCCAGTTTTCTATTA 59.524 40.000 0.00 0.00 0.00 0.98
476 477 5.710099 TGACCAAAGCCCAGTTTTCTATTAG 59.290 40.000 0.00 0.00 0.00 1.73
477 478 5.641155 ACCAAAGCCCAGTTTTCTATTAGT 58.359 37.500 0.00 0.00 0.00 2.24
641 644 0.806102 CGCGGATTCCAAGATCACGT 60.806 55.000 0.00 0.00 0.00 4.49
647 650 2.270352 TTCCAAGATCACGTTGGCTT 57.730 45.000 7.23 0.00 43.72 4.35
648 651 1.522668 TCCAAGATCACGTTGGCTTG 58.477 50.000 7.23 11.92 43.72 4.01
723 726 2.356780 CCCAGGGACTCGGGTGTAC 61.357 68.421 0.00 0.00 40.38 2.90
744 747 3.118775 ACTTGCTTTCTTTGTTGGGGTTC 60.119 43.478 0.00 0.00 0.00 3.62
765 768 6.198591 GGTTCGTTGTATCACTAGCAATCTAC 59.801 42.308 0.00 0.00 0.00 2.59
771 793 8.552034 GTTGTATCACTAGCAATCTACAAATCC 58.448 37.037 0.00 0.00 32.65 3.01
887 1292 0.611618 TACCAGTTAGACGGGCCGAA 60.612 55.000 35.78 14.51 36.91 4.30
946 1351 1.995484 CACTCACTACATCGTGGCTTG 59.005 52.381 0.00 0.00 35.63 4.01
1298 1748 3.950254 CGTCCCCGATCTCGTCCG 61.950 72.222 0.00 0.00 37.74 4.79
1447 4125 1.079266 CCTCCAGCACAGAGTCTGC 60.079 63.158 20.31 8.19 34.37 4.26
1591 4269 1.064946 GGTGATCTCGTCTCAGCGG 59.935 63.158 0.00 0.00 32.16 5.52
1785 4464 1.144936 GCAGAGCCTAAGCGTGGAT 59.855 57.895 0.00 0.00 46.67 3.41
1803 4485 0.036164 ATCGTGTGCCAGCAAACCTA 59.964 50.000 7.36 0.00 30.67 3.08
1868 4730 4.583073 GGGTGTTGGACTTTGTTTACTCAT 59.417 41.667 0.00 0.00 0.00 2.90
1874 4736 4.509970 TGGACTTTGTTTACTCATCGTGTG 59.490 41.667 0.00 0.00 0.00 3.82
1882 4744 2.265739 TCATCGTGTGAGGCTGCC 59.734 61.111 11.65 11.65 31.80 4.85
1943 4805 1.077501 CGTCATGGGTGCTGGGAAT 60.078 57.895 0.00 0.00 0.00 3.01
2059 4921 1.972660 CTCCCCGGATCCACAGAACC 61.973 65.000 13.41 0.00 0.00 3.62
2430 5322 9.208022 TCTAAAACTGAATAGTGATCACTTGTG 57.792 33.333 32.14 19.21 42.54 3.33
2691 8128 8.034313 TGTAAATATCTTGTAGATGCCTCCTT 57.966 34.615 0.00 0.00 35.37 3.36
2769 8206 2.547007 GCAAAAACAGGTAATGGCGGTT 60.547 45.455 0.00 0.00 0.00 4.44
2792 8232 1.072489 CCAGATGCTGCTGATCTCCAT 59.928 52.381 0.00 0.00 38.14 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.155975 CCTCTATAAGCGCATCTATGTTTATTT 57.844 33.333 11.47 0.00 0.00 1.40
15 16 8.531982 TCCTCTATAAGCGCATCTATGTTTATT 58.468 33.333 11.47 0.00 0.00 1.40
16 17 8.067751 TCCTCTATAAGCGCATCTATGTTTAT 57.932 34.615 11.47 4.81 0.00 1.40
17 18 7.462571 TCCTCTATAAGCGCATCTATGTTTA 57.537 36.000 11.47 0.00 0.00 2.01
18 19 6.346477 TCCTCTATAAGCGCATCTATGTTT 57.654 37.500 11.47 0.00 0.00 2.83
19 20 5.984695 TCCTCTATAAGCGCATCTATGTT 57.015 39.130 11.47 0.00 0.00 2.71
20 21 5.984695 TTCCTCTATAAGCGCATCTATGT 57.015 39.130 11.47 0.00 0.00 2.29
21 22 7.547019 TGAATTTCCTCTATAAGCGCATCTATG 59.453 37.037 11.47 0.00 0.00 2.23
22 23 7.615403 TGAATTTCCTCTATAAGCGCATCTAT 58.385 34.615 11.47 6.03 0.00 1.98
23 24 6.993079 TGAATTTCCTCTATAAGCGCATCTA 58.007 36.000 11.47 0.00 0.00 1.98
24 25 5.858381 TGAATTTCCTCTATAAGCGCATCT 58.142 37.500 11.47 0.00 0.00 2.90
25 26 6.366630 GTTGAATTTCCTCTATAAGCGCATC 58.633 40.000 11.47 0.00 0.00 3.91
26 27 5.239525 GGTTGAATTTCCTCTATAAGCGCAT 59.760 40.000 11.47 0.00 0.00 4.73
27 28 4.574828 GGTTGAATTTCCTCTATAAGCGCA 59.425 41.667 11.47 0.00 0.00 6.09
28 29 4.816925 AGGTTGAATTTCCTCTATAAGCGC 59.183 41.667 0.00 0.00 0.00 5.92
29 30 8.433421 TTTAGGTTGAATTTCCTCTATAAGCG 57.567 34.615 1.93 0.00 35.51 4.68
102 103 7.227156 AGTGAAAATAGATGCCCTTATACAGG 58.773 38.462 0.00 0.00 43.49 4.00
103 104 8.682936 AAGTGAAAATAGATGCCCTTATACAG 57.317 34.615 0.00 0.00 0.00 2.74
107 108 9.920946 TCTTAAAGTGAAAATAGATGCCCTTAT 57.079 29.630 0.00 0.00 0.00 1.73
108 109 9.396022 CTCTTAAAGTGAAAATAGATGCCCTTA 57.604 33.333 0.00 0.00 0.00 2.69
109 110 7.340487 CCTCTTAAAGTGAAAATAGATGCCCTT 59.660 37.037 0.00 0.00 0.00 3.95
110 111 6.830838 CCTCTTAAAGTGAAAATAGATGCCCT 59.169 38.462 0.00 0.00 0.00 5.19
111 112 6.828785 TCCTCTTAAAGTGAAAATAGATGCCC 59.171 38.462 0.00 0.00 0.00 5.36
112 113 7.467947 GCTCCTCTTAAAGTGAAAATAGATGCC 60.468 40.741 0.00 0.00 0.00 4.40
113 114 7.281999 AGCTCCTCTTAAAGTGAAAATAGATGC 59.718 37.037 0.00 0.00 0.00 3.91
114 115 8.729805 AGCTCCTCTTAAAGTGAAAATAGATG 57.270 34.615 0.00 0.00 0.00 2.90
115 116 8.543774 TGAGCTCCTCTTAAAGTGAAAATAGAT 58.456 33.333 12.15 0.00 0.00 1.98
116 117 7.907389 TGAGCTCCTCTTAAAGTGAAAATAGA 58.093 34.615 12.15 0.00 0.00 1.98
117 118 8.447053 GTTGAGCTCCTCTTAAAGTGAAAATAG 58.553 37.037 12.15 0.00 0.00 1.73
118 119 7.936847 TGTTGAGCTCCTCTTAAAGTGAAAATA 59.063 33.333 12.15 0.00 0.00 1.40
119 120 6.772716 TGTTGAGCTCCTCTTAAAGTGAAAAT 59.227 34.615 12.15 0.00 0.00 1.82
120 121 6.119536 TGTTGAGCTCCTCTTAAAGTGAAAA 58.880 36.000 12.15 0.00 0.00 2.29
121 122 5.680619 TGTTGAGCTCCTCTTAAAGTGAAA 58.319 37.500 12.15 0.00 0.00 2.69
122 123 5.290493 TGTTGAGCTCCTCTTAAAGTGAA 57.710 39.130 12.15 0.00 0.00 3.18
123 124 4.955811 TGTTGAGCTCCTCTTAAAGTGA 57.044 40.909 12.15 0.00 0.00 3.41
124 125 4.453819 CCTTGTTGAGCTCCTCTTAAAGTG 59.546 45.833 12.15 0.00 0.00 3.16
125 126 4.646572 CCTTGTTGAGCTCCTCTTAAAGT 58.353 43.478 12.15 0.00 0.00 2.66
126 127 3.438434 GCCTTGTTGAGCTCCTCTTAAAG 59.562 47.826 12.15 6.50 0.00 1.85
127 128 3.181445 TGCCTTGTTGAGCTCCTCTTAAA 60.181 43.478 12.15 0.00 0.00 1.52
128 129 2.371841 TGCCTTGTTGAGCTCCTCTTAA 59.628 45.455 12.15 0.00 0.00 1.85
129 130 1.977854 TGCCTTGTTGAGCTCCTCTTA 59.022 47.619 12.15 0.00 0.00 2.10
130 131 0.767375 TGCCTTGTTGAGCTCCTCTT 59.233 50.000 12.15 0.00 0.00 2.85
131 132 0.324285 CTGCCTTGTTGAGCTCCTCT 59.676 55.000 12.15 0.00 0.00 3.69
132 133 0.322975 TCTGCCTTGTTGAGCTCCTC 59.677 55.000 12.15 4.75 0.00 3.71
133 134 0.324285 CTCTGCCTTGTTGAGCTCCT 59.676 55.000 12.15 0.00 0.00 3.69
134 135 0.322975 TCTCTGCCTTGTTGAGCTCC 59.677 55.000 12.15 0.00 0.00 4.70
135 136 1.675415 CCTCTCTGCCTTGTTGAGCTC 60.675 57.143 6.82 6.82 0.00 4.09
136 137 0.324285 CCTCTCTGCCTTGTTGAGCT 59.676 55.000 0.00 0.00 0.00 4.09
137 138 0.676151 CCCTCTCTGCCTTGTTGAGC 60.676 60.000 0.00 0.00 0.00 4.26
138 139 0.979665 TCCCTCTCTGCCTTGTTGAG 59.020 55.000 0.00 0.00 0.00 3.02
139 140 0.687354 GTCCCTCTCTGCCTTGTTGA 59.313 55.000 0.00 0.00 0.00 3.18
140 141 0.671781 CGTCCCTCTCTGCCTTGTTG 60.672 60.000 0.00 0.00 0.00 3.33
141 142 1.674057 CGTCCCTCTCTGCCTTGTT 59.326 57.895 0.00 0.00 0.00 2.83
142 143 2.286523 CCGTCCCTCTCTGCCTTGT 61.287 63.158 0.00 0.00 0.00 3.16
143 144 2.581354 CCGTCCCTCTCTGCCTTG 59.419 66.667 0.00 0.00 0.00 3.61
144 145 2.685380 CCCGTCCCTCTCTGCCTT 60.685 66.667 0.00 0.00 0.00 4.35
147 148 1.403687 ATAAGCCCGTCCCTCTCTGC 61.404 60.000 0.00 0.00 0.00 4.26
148 149 1.996798 TATAAGCCCGTCCCTCTCTG 58.003 55.000 0.00 0.00 0.00 3.35
149 150 2.699321 GTTTATAAGCCCGTCCCTCTCT 59.301 50.000 0.00 0.00 0.00 3.10
150 151 2.699321 AGTTTATAAGCCCGTCCCTCTC 59.301 50.000 0.00 0.00 0.00 3.20
151 152 2.434702 CAGTTTATAAGCCCGTCCCTCT 59.565 50.000 0.00 0.00 0.00 3.69
152 153 2.484947 CCAGTTTATAAGCCCGTCCCTC 60.485 54.545 0.00 0.00 0.00 4.30
153 154 1.489230 CCAGTTTATAAGCCCGTCCCT 59.511 52.381 0.00 0.00 0.00 4.20
154 155 1.211212 ACCAGTTTATAAGCCCGTCCC 59.789 52.381 0.00 0.00 0.00 4.46
155 156 2.285977 CACCAGTTTATAAGCCCGTCC 58.714 52.381 0.00 0.00 0.00 4.79
156 157 2.676342 CACACCAGTTTATAAGCCCGTC 59.324 50.000 0.00 0.00 0.00 4.79
157 158 2.303600 TCACACCAGTTTATAAGCCCGT 59.696 45.455 0.00 0.00 0.00 5.28
158 159 2.936498 CTCACACCAGTTTATAAGCCCG 59.064 50.000 0.00 0.00 0.00 6.13
159 160 2.683362 GCTCACACCAGTTTATAAGCCC 59.317 50.000 0.00 0.00 0.00 5.19
160 161 2.351726 CGCTCACACCAGTTTATAAGCC 59.648 50.000 0.00 0.00 0.00 4.35
161 162 2.223044 GCGCTCACACCAGTTTATAAGC 60.223 50.000 0.00 0.00 0.00 3.09
162 163 2.351726 GGCGCTCACACCAGTTTATAAG 59.648 50.000 7.64 0.00 0.00 1.73
163 164 2.352388 GGCGCTCACACCAGTTTATAA 58.648 47.619 7.64 0.00 0.00 0.98
164 165 1.406341 GGGCGCTCACACCAGTTTATA 60.406 52.381 7.64 0.00 0.00 0.98
165 166 0.676782 GGGCGCTCACACCAGTTTAT 60.677 55.000 7.64 0.00 0.00 1.40
166 167 1.302192 GGGCGCTCACACCAGTTTA 60.302 57.895 7.64 0.00 0.00 2.01
167 168 2.594592 GGGCGCTCACACCAGTTT 60.595 61.111 7.64 0.00 0.00 2.66
168 169 3.120086 AAGGGCGCTCACACCAGTT 62.120 57.895 11.40 0.00 0.00 3.16
169 170 3.537206 GAAGGGCGCTCACACCAGT 62.537 63.158 11.40 0.00 0.00 4.00
170 171 2.743928 GAAGGGCGCTCACACCAG 60.744 66.667 11.40 0.00 0.00 4.00
171 172 4.680237 CGAAGGGCGCTCACACCA 62.680 66.667 11.40 0.00 0.00 4.17
184 185 2.742372 CCACCTCGCCAACCGAAG 60.742 66.667 0.00 0.00 46.81 3.79
185 186 4.323477 CCCACCTCGCCAACCGAA 62.323 66.667 0.00 0.00 46.81 4.30
188 189 1.833787 TTAGTCCCACCTCGCCAACC 61.834 60.000 0.00 0.00 0.00 3.77
189 190 0.035739 TTTAGTCCCACCTCGCCAAC 59.964 55.000 0.00 0.00 0.00 3.77
190 191 0.035739 GTTTAGTCCCACCTCGCCAA 59.964 55.000 0.00 0.00 0.00 4.52
191 192 1.122632 TGTTTAGTCCCACCTCGCCA 61.123 55.000 0.00 0.00 0.00 5.69
192 193 0.672711 GTGTTTAGTCCCACCTCGCC 60.673 60.000 0.00 0.00 0.00 5.54
193 194 0.320697 AGTGTTTAGTCCCACCTCGC 59.679 55.000 0.00 0.00 31.88 5.03
194 195 1.337823 CCAGTGTTTAGTCCCACCTCG 60.338 57.143 0.00 0.00 31.88 4.63
195 196 1.610886 GCCAGTGTTTAGTCCCACCTC 60.611 57.143 0.00 0.00 31.88 3.85
196 197 0.400594 GCCAGTGTTTAGTCCCACCT 59.599 55.000 0.00 0.00 31.88 4.00
197 198 0.608308 GGCCAGTGTTTAGTCCCACC 60.608 60.000 0.00 0.00 31.88 4.61
198 199 0.953960 CGGCCAGTGTTTAGTCCCAC 60.954 60.000 2.24 0.00 0.00 4.61
199 200 1.373435 CGGCCAGTGTTTAGTCCCA 59.627 57.895 2.24 0.00 0.00 4.37
200 201 2.038837 GCGGCCAGTGTTTAGTCCC 61.039 63.158 2.24 0.00 0.00 4.46
201 202 0.887387 TTGCGGCCAGTGTTTAGTCC 60.887 55.000 2.24 0.00 0.00 3.85
202 203 0.237498 GTTGCGGCCAGTGTTTAGTC 59.763 55.000 2.24 0.00 0.00 2.59
203 204 0.179029 AGTTGCGGCCAGTGTTTAGT 60.179 50.000 2.24 0.00 0.00 2.24
204 205 1.732259 CTAGTTGCGGCCAGTGTTTAG 59.268 52.381 2.24 0.00 0.00 1.85
205 206 1.609580 CCTAGTTGCGGCCAGTGTTTA 60.610 52.381 2.24 0.00 0.00 2.01
206 207 0.889186 CCTAGTTGCGGCCAGTGTTT 60.889 55.000 2.24 0.00 0.00 2.83
207 208 1.302511 CCTAGTTGCGGCCAGTGTT 60.303 57.895 2.24 0.00 0.00 3.32
208 209 2.214216 TCCTAGTTGCGGCCAGTGT 61.214 57.895 2.24 0.00 0.00 3.55
209 210 1.741770 GTCCTAGTTGCGGCCAGTG 60.742 63.158 2.24 0.00 0.00 3.66
210 211 2.663196 GTCCTAGTTGCGGCCAGT 59.337 61.111 2.24 0.00 0.00 4.00
211 212 2.125106 GGTCCTAGTTGCGGCCAG 60.125 66.667 2.24 0.00 0.00 4.85
212 213 2.925706 TGGTCCTAGTTGCGGCCA 60.926 61.111 2.24 0.00 0.00 5.36
213 214 2.125106 CTGGTCCTAGTTGCGGCC 60.125 66.667 0.00 0.00 0.00 6.13
214 215 2.820037 GCTGGTCCTAGTTGCGGC 60.820 66.667 0.00 0.00 0.00 6.53
215 216 2.125106 GGCTGGTCCTAGTTGCGG 60.125 66.667 0.00 0.00 0.00 5.69
216 217 2.125106 GGGCTGGTCCTAGTTGCG 60.125 66.667 0.00 0.00 34.39 4.85
217 218 0.038310 AAAGGGCTGGTCCTAGTTGC 59.962 55.000 0.00 0.00 35.80 4.17
218 219 2.572104 ACTAAAGGGCTGGTCCTAGTTG 59.428 50.000 0.00 0.00 35.80 3.16
219 220 2.838813 GACTAAAGGGCTGGTCCTAGTT 59.161 50.000 0.00 0.00 35.80 2.24
220 221 2.468915 GACTAAAGGGCTGGTCCTAGT 58.531 52.381 0.00 0.00 35.80 2.57
221 222 1.763545 GGACTAAAGGGCTGGTCCTAG 59.236 57.143 0.00 0.00 43.30 3.02
222 223 1.624391 GGGACTAAAGGGCTGGTCCTA 60.624 57.143 10.21 0.00 45.23 2.94
223 224 0.914902 GGGACTAAAGGGCTGGTCCT 60.915 60.000 10.21 0.00 45.23 3.85
224 225 1.608154 GGGACTAAAGGGCTGGTCC 59.392 63.158 0.00 0.00 45.18 4.46
225 226 1.221021 CGGGACTAAAGGGCTGGTC 59.779 63.158 0.00 0.00 0.00 4.02
226 227 2.298661 CCGGGACTAAAGGGCTGGT 61.299 63.158 0.00 0.00 0.00 4.00
227 228 1.848886 AACCGGGACTAAAGGGCTGG 61.849 60.000 6.32 0.00 0.00 4.85
228 229 0.037734 AAACCGGGACTAAAGGGCTG 59.962 55.000 6.32 0.00 0.00 4.85
229 230 0.037734 CAAACCGGGACTAAAGGGCT 59.962 55.000 6.32 0.00 0.00 5.19
230 231 0.251033 ACAAACCGGGACTAAAGGGC 60.251 55.000 6.32 0.00 0.00 5.19
231 232 1.530323 CACAAACCGGGACTAAAGGG 58.470 55.000 6.32 0.00 0.00 3.95
232 233 1.202842 ACCACAAACCGGGACTAAAGG 60.203 52.381 6.32 0.80 0.00 3.11
233 234 2.265589 ACCACAAACCGGGACTAAAG 57.734 50.000 6.32 0.00 0.00 1.85
234 235 3.327172 TCATACCACAAACCGGGACTAAA 59.673 43.478 6.32 0.00 0.00 1.85
235 236 2.905085 TCATACCACAAACCGGGACTAA 59.095 45.455 6.32 0.00 0.00 2.24
236 237 2.538222 TCATACCACAAACCGGGACTA 58.462 47.619 6.32 0.00 0.00 2.59
237 238 1.354101 TCATACCACAAACCGGGACT 58.646 50.000 6.32 0.00 0.00 3.85
238 239 1.808343 GTTCATACCACAAACCGGGAC 59.192 52.381 6.32 0.00 0.00 4.46
239 240 1.271488 GGTTCATACCACAAACCGGGA 60.271 52.381 6.32 0.00 44.36 5.14
240 241 1.170442 GGTTCATACCACAAACCGGG 58.830 55.000 6.32 0.00 44.36 5.73
243 244 1.170442 CCCGGTTCATACCACAAACC 58.830 55.000 0.00 0.00 45.31 3.27
244 245 1.808343 GTCCCGGTTCATACCACAAAC 59.192 52.381 0.00 0.00 45.31 2.93
245 246 1.700739 AGTCCCGGTTCATACCACAAA 59.299 47.619 0.00 0.00 45.31 2.83
246 247 1.354101 AGTCCCGGTTCATACCACAA 58.646 50.000 0.00 0.00 45.31 3.33
247 248 2.234896 TAGTCCCGGTTCATACCACA 57.765 50.000 0.00 0.00 45.31 4.17
248 249 3.528532 CTTTAGTCCCGGTTCATACCAC 58.471 50.000 0.00 0.00 45.31 4.16
249 250 2.502538 CCTTTAGTCCCGGTTCATACCA 59.497 50.000 0.00 0.00 45.31 3.25
250 251 2.158856 CCCTTTAGTCCCGGTTCATACC 60.159 54.545 0.00 0.00 41.33 2.73
251 252 2.502947 ACCCTTTAGTCCCGGTTCATAC 59.497 50.000 0.00 0.00 0.00 2.39
252 253 2.502538 CACCCTTTAGTCCCGGTTCATA 59.497 50.000 0.00 0.00 0.00 2.15
253 254 1.280998 CACCCTTTAGTCCCGGTTCAT 59.719 52.381 0.00 0.00 0.00 2.57
254 255 0.688487 CACCCTTTAGTCCCGGTTCA 59.312 55.000 0.00 0.00 0.00 3.18
255 256 0.035725 CCACCCTTTAGTCCCGGTTC 60.036 60.000 0.00 0.00 0.00 3.62
256 257 0.769386 ACCACCCTTTAGTCCCGGTT 60.769 55.000 0.00 0.00 0.00 4.44
257 258 1.151965 ACCACCCTTTAGTCCCGGT 60.152 57.895 0.00 0.00 0.00 5.28
258 259 1.298667 CACCACCCTTTAGTCCCGG 59.701 63.158 0.00 0.00 0.00 5.73
259 260 1.298667 CCACCACCCTTTAGTCCCG 59.701 63.158 0.00 0.00 0.00 5.14
260 261 1.689412 CCCACCACCCTTTAGTCCC 59.311 63.158 0.00 0.00 0.00 4.46
261 262 1.001269 GCCCACCACCCTTTAGTCC 60.001 63.158 0.00 0.00 0.00 3.85
262 263 1.001269 GGCCCACCACCCTTTAGTC 60.001 63.158 0.00 0.00 35.26 2.59
263 264 1.776710 TGGCCCACCACCCTTTAGT 60.777 57.895 0.00 0.00 42.67 2.24
264 265 1.000896 CTGGCCCACCACCCTTTAG 60.001 63.158 0.00 0.00 42.67 1.85
265 266 2.543797 CCTGGCCCACCACCCTTTA 61.544 63.158 0.00 0.00 42.67 1.85
266 267 3.914713 CCTGGCCCACCACCCTTT 61.915 66.667 0.00 0.00 42.67 3.11
267 268 4.938756 TCCTGGCCCACCACCCTT 62.939 66.667 0.00 0.00 42.67 3.95
279 280 2.361610 AATGGGCAACGCTCCTGG 60.362 61.111 0.00 0.00 37.60 4.45
280 281 2.703798 CCAATGGGCAACGCTCCTG 61.704 63.158 0.00 0.00 37.60 3.86
281 282 2.361610 CCAATGGGCAACGCTCCT 60.362 61.111 0.00 0.00 37.60 3.69
282 283 2.676471 ACCAATGGGCAACGCTCC 60.676 61.111 3.55 0.00 37.90 4.70
283 284 2.700773 GGACCAATGGGCAACGCTC 61.701 63.158 7.73 0.00 37.90 5.03
284 285 2.676471 GGACCAATGGGCAACGCT 60.676 61.111 7.73 0.00 37.90 5.07
285 286 3.758931 GGGACCAATGGGCAACGC 61.759 66.667 7.73 0.00 37.90 4.84
286 287 3.439540 CGGGACCAATGGGCAACG 61.440 66.667 7.73 7.34 37.90 4.10
287 288 3.068064 CCGGGACCAATGGGCAAC 61.068 66.667 7.73 0.00 37.90 4.17
288 289 2.664835 AAACCGGGACCAATGGGCAA 62.665 55.000 7.73 0.00 37.90 4.52
289 290 3.153629 AAACCGGGACCAATGGGCA 62.154 57.895 7.73 0.00 37.90 5.36
290 291 2.283604 AAACCGGGACCAATGGGC 60.284 61.111 6.32 0.00 37.90 5.36
291 292 1.228737 ACAAACCGGGACCAATGGG 60.229 57.895 6.32 0.00 41.29 4.00
292 293 1.248101 GGACAAACCGGGACCAATGG 61.248 60.000 6.32 0.00 0.00 3.16
293 294 1.248101 GGGACAAACCGGGACCAATG 61.248 60.000 6.32 0.00 40.11 2.82
294 295 1.076014 GGGACAAACCGGGACCAAT 59.924 57.895 6.32 0.00 40.11 3.16
295 296 2.384433 TGGGACAAACCGGGACCAA 61.384 57.895 6.32 0.00 40.11 3.67
296 297 2.773053 TGGGACAAACCGGGACCA 60.773 61.111 6.32 1.29 40.11 4.02
297 298 2.281970 GTGGGACAAACCGGGACC 60.282 66.667 6.32 0.00 44.16 4.46
298 299 2.281970 GGTGGGACAAACCGGGAC 60.282 66.667 6.32 0.00 44.16 4.46
299 300 1.721093 ATTGGTGGGACAAACCGGGA 61.721 55.000 6.32 0.00 44.16 5.14
300 301 1.228737 ATTGGTGGGACAAACCGGG 60.229 57.895 6.32 0.00 44.16 5.73
301 302 1.582610 CGATTGGTGGGACAAACCGG 61.583 60.000 0.00 0.00 44.16 5.28
302 303 1.582610 CCGATTGGTGGGACAAACCG 61.583 60.000 0.00 0.00 44.16 4.44
303 304 2.263153 CCGATTGGTGGGACAAACC 58.737 57.895 0.00 0.00 44.16 3.27
311 312 0.965363 CCTTTGGTCCCGATTGGTGG 60.965 60.000 0.00 0.00 34.77 4.61
312 313 0.965363 CCCTTTGGTCCCGATTGGTG 60.965 60.000 0.00 0.00 34.77 4.17
313 314 1.382629 CCCTTTGGTCCCGATTGGT 59.617 57.895 0.00 0.00 34.77 3.67
314 315 1.382629 ACCCTTTGGTCCCGATTGG 59.617 57.895 0.00 0.00 43.06 3.16
324 325 1.084289 GATTCGTTCGGACCCTTTGG 58.916 55.000 0.00 0.00 37.80 3.28
325 326 0.719465 CGATTCGTTCGGACCCTTTG 59.281 55.000 0.00 0.00 44.28 2.77
326 327 3.132863 CGATTCGTTCGGACCCTTT 57.867 52.632 0.00 0.00 44.28 3.11
327 328 4.904466 CGATTCGTTCGGACCCTT 57.096 55.556 0.00 0.00 44.28 3.95
335 336 0.377203 GCATTGGTCCCGATTCGTTC 59.623 55.000 5.20 0.00 0.00 3.95
336 337 1.029947 GGCATTGGTCCCGATTCGTT 61.030 55.000 5.20 0.00 0.00 3.85
337 338 1.451387 GGCATTGGTCCCGATTCGT 60.451 57.895 5.20 0.00 0.00 3.85
338 339 2.186826 GGGCATTGGTCCCGATTCG 61.187 63.158 0.00 0.00 33.43 3.34
339 340 3.841870 GGGCATTGGTCCCGATTC 58.158 61.111 0.00 0.00 33.43 2.52
345 346 3.995506 CTCGTGGGGGCATTGGTCC 62.996 68.421 0.00 0.00 38.40 4.46
346 347 2.438434 CTCGTGGGGGCATTGGTC 60.438 66.667 0.00 0.00 0.00 4.02
347 348 4.047125 CCTCGTGGGGGCATTGGT 62.047 66.667 0.00 0.00 0.00 3.67
372 373 4.424711 TTCATGCGGCCAGGGGTC 62.425 66.667 2.24 0.00 0.00 4.46
373 374 4.740822 GTTCATGCGGCCAGGGGT 62.741 66.667 2.24 0.00 0.00 4.95
381 382 3.910914 TTGGTCCCGGTTCATGCGG 62.911 63.158 0.00 3.49 0.00 5.69
382 383 1.748879 ATTGGTCCCGGTTCATGCG 60.749 57.895 0.00 0.00 0.00 4.73
383 384 1.809207 CATTGGTCCCGGTTCATGC 59.191 57.895 0.00 0.00 0.00 4.06
384 385 0.680921 AGCATTGGTCCCGGTTCATG 60.681 55.000 0.00 0.00 0.00 3.07
385 386 0.394352 GAGCATTGGTCCCGGTTCAT 60.394 55.000 0.00 0.00 0.00 2.57
386 387 1.002624 GAGCATTGGTCCCGGTTCA 60.003 57.895 0.00 0.00 0.00 3.18
387 388 1.002624 TGAGCATTGGTCCCGGTTC 60.003 57.895 12.99 0.00 0.00 3.62
388 389 1.303317 GTGAGCATTGGTCCCGGTT 60.303 57.895 12.99 0.00 0.00 4.44
389 390 1.852157 ATGTGAGCATTGGTCCCGGT 61.852 55.000 12.99 0.00 29.54 5.28
390 391 0.680921 AATGTGAGCATTGGTCCCGG 60.681 55.000 12.99 0.00 43.12 5.73
391 392 1.942657 CTAATGTGAGCATTGGTCCCG 59.057 52.381 12.99 0.00 44.32 5.14
396 397 2.947652 CTGGGACTAATGTGAGCATTGG 59.052 50.000 3.39 3.10 44.32 3.16
397 398 3.614092 ACTGGGACTAATGTGAGCATTG 58.386 45.455 3.39 0.00 44.32 2.82
398 399 4.265073 GAACTGGGACTAATGTGAGCATT 58.735 43.478 0.00 0.00 46.14 3.56
399 400 3.679917 CGAACTGGGACTAATGTGAGCAT 60.680 47.826 0.00 0.00 36.80 3.79
400 401 2.353704 CGAACTGGGACTAATGTGAGCA 60.354 50.000 0.00 0.00 0.00 4.26
401 402 2.271800 CGAACTGGGACTAATGTGAGC 58.728 52.381 0.00 0.00 0.00 4.26
402 403 3.056821 TCACGAACTGGGACTAATGTGAG 60.057 47.826 0.00 0.00 31.99 3.51
403 404 2.894765 TCACGAACTGGGACTAATGTGA 59.105 45.455 0.00 0.00 33.14 3.58
404 405 2.993899 GTCACGAACTGGGACTAATGTG 59.006 50.000 0.00 0.00 0.00 3.21
405 406 2.897969 AGTCACGAACTGGGACTAATGT 59.102 45.455 0.00 0.00 39.95 2.71
406 407 3.594603 AGTCACGAACTGGGACTAATG 57.405 47.619 0.00 0.00 39.95 1.90
416 417 1.111116 TCCCGGTTCAGTCACGAACT 61.111 55.000 0.00 0.00 43.92 3.01
417 418 0.942884 GTCCCGGTTCAGTCACGAAC 60.943 60.000 0.00 4.51 43.75 3.95
418 419 1.111116 AGTCCCGGTTCAGTCACGAA 61.111 55.000 0.00 0.00 0.00 3.85
419 420 0.250858 TAGTCCCGGTTCAGTCACGA 60.251 55.000 0.00 0.00 0.00 4.35
420 421 0.599558 TTAGTCCCGGTTCAGTCACG 59.400 55.000 0.00 0.00 0.00 4.35
421 422 2.028385 ACATTAGTCCCGGTTCAGTCAC 60.028 50.000 0.00 0.00 0.00 3.67
422 423 2.028476 CACATTAGTCCCGGTTCAGTCA 60.028 50.000 0.00 0.00 0.00 3.41
423 424 2.028385 ACACATTAGTCCCGGTTCAGTC 60.028 50.000 0.00 0.00 0.00 3.51
424 425 1.975680 ACACATTAGTCCCGGTTCAGT 59.024 47.619 0.00 0.00 0.00 3.41
425 426 2.742053 CAACACATTAGTCCCGGTTCAG 59.258 50.000 0.00 0.00 0.00 3.02
426 427 2.773487 CAACACATTAGTCCCGGTTCA 58.227 47.619 0.00 0.00 0.00 3.18
427 428 1.467342 GCAACACATTAGTCCCGGTTC 59.533 52.381 0.00 0.00 0.00 3.62
428 429 1.530323 GCAACACATTAGTCCCGGTT 58.470 50.000 0.00 0.00 0.00 4.44
429 430 0.322187 GGCAACACATTAGTCCCGGT 60.322 55.000 0.00 0.00 0.00 5.28
430 431 1.029947 GGGCAACACATTAGTCCCGG 61.030 60.000 0.00 0.00 39.74 5.73
431 432 0.035439 AGGGCAACACATTAGTCCCG 60.035 55.000 0.00 0.00 38.73 5.14
432 433 1.271926 ACAGGGCAACACATTAGTCCC 60.272 52.381 0.00 0.00 39.74 4.46
433 434 1.812571 CACAGGGCAACACATTAGTCC 59.187 52.381 0.00 0.00 39.74 3.85
434 435 2.484264 GTCACAGGGCAACACATTAGTC 59.516 50.000 0.00 0.00 39.74 2.59
435 436 2.504367 GTCACAGGGCAACACATTAGT 58.496 47.619 0.00 0.00 39.74 2.24
436 437 1.812571 GGTCACAGGGCAACACATTAG 59.187 52.381 0.00 0.00 39.74 1.73
437 438 1.143889 TGGTCACAGGGCAACACATTA 59.856 47.619 0.00 0.00 39.74 1.90
438 439 0.106268 TGGTCACAGGGCAACACATT 60.106 50.000 0.00 0.00 39.74 2.71
439 440 0.106268 TTGGTCACAGGGCAACACAT 60.106 50.000 0.00 0.00 39.74 3.21
440 441 0.323816 TTTGGTCACAGGGCAACACA 60.324 50.000 0.00 0.00 39.74 3.72
441 442 0.385390 CTTTGGTCACAGGGCAACAC 59.615 55.000 0.00 0.00 39.74 3.32
442 443 1.391157 GCTTTGGTCACAGGGCAACA 61.391 55.000 0.00 0.00 39.74 3.33
443 444 1.363807 GCTTTGGTCACAGGGCAAC 59.636 57.895 0.00 0.00 0.00 4.17
444 445 1.832167 GGCTTTGGTCACAGGGCAA 60.832 57.895 0.00 0.00 0.00 4.52
445 446 2.203480 GGCTTTGGTCACAGGGCA 60.203 61.111 0.00 0.00 0.00 5.36
446 447 2.991540 GGGCTTTGGTCACAGGGC 60.992 66.667 0.00 0.00 0.00 5.19
447 448 1.604593 CTGGGCTTTGGTCACAGGG 60.605 63.158 0.00 0.00 0.00 4.45
448 449 0.468029 AACTGGGCTTTGGTCACAGG 60.468 55.000 0.00 0.00 33.63 4.00
449 450 1.402787 AAACTGGGCTTTGGTCACAG 58.597 50.000 0.00 0.00 35.40 3.66
450 451 1.754226 GAAAACTGGGCTTTGGTCACA 59.246 47.619 0.00 0.00 0.00 3.58
451 452 2.031870 AGAAAACTGGGCTTTGGTCAC 58.968 47.619 0.00 0.00 0.00 3.67
452 453 2.452600 AGAAAACTGGGCTTTGGTCA 57.547 45.000 0.00 0.00 0.00 4.02
453 454 5.710567 ACTAATAGAAAACTGGGCTTTGGTC 59.289 40.000 0.00 0.00 0.00 4.02
454 455 5.476945 CACTAATAGAAAACTGGGCTTTGGT 59.523 40.000 0.00 0.00 0.00 3.67
455 456 5.710099 TCACTAATAGAAAACTGGGCTTTGG 59.290 40.000 0.00 0.00 0.00 3.28
456 457 6.431234 ACTCACTAATAGAAAACTGGGCTTTG 59.569 38.462 0.00 0.00 0.00 2.77
457 458 6.431234 CACTCACTAATAGAAAACTGGGCTTT 59.569 38.462 0.00 0.00 0.00 3.51
458 459 5.940470 CACTCACTAATAGAAAACTGGGCTT 59.060 40.000 0.00 0.00 0.00 4.35
459 460 5.491982 CACTCACTAATAGAAAACTGGGCT 58.508 41.667 0.00 0.00 0.00 5.19
460 461 4.636206 CCACTCACTAATAGAAAACTGGGC 59.364 45.833 0.00 0.00 0.00 5.36
461 462 6.049955 TCCACTCACTAATAGAAAACTGGG 57.950 41.667 0.00 0.00 0.00 4.45
462 463 7.331026 TGATCCACTCACTAATAGAAAACTGG 58.669 38.462 0.00 0.00 0.00 4.00
463 464 8.777865 TTGATCCACTCACTAATAGAAAACTG 57.222 34.615 0.00 0.00 32.17 3.16
464 465 8.816894 TCTTGATCCACTCACTAATAGAAAACT 58.183 33.333 0.00 0.00 32.17 2.66
465 466 9.606631 ATCTTGATCCACTCACTAATAGAAAAC 57.393 33.333 0.00 0.00 32.17 2.43
466 467 9.823647 GATCTTGATCCACTCACTAATAGAAAA 57.176 33.333 0.00 0.00 32.17 2.29
467 468 8.424918 GGATCTTGATCCACTCACTAATAGAAA 58.575 37.037 21.11 0.00 40.43 2.52
468 469 7.565029 TGGATCTTGATCCACTCACTAATAGAA 59.435 37.037 23.89 1.35 45.19 2.10
469 470 7.069344 TGGATCTTGATCCACTCACTAATAGA 58.931 38.462 23.89 1.73 45.19 1.98
470 471 7.295322 TGGATCTTGATCCACTCACTAATAG 57.705 40.000 23.89 0.00 45.19 1.73
641 644 3.661648 GCTCCCTCCCCAAGCCAA 61.662 66.667 0.00 0.00 0.00 4.52
723 726 3.457234 GAACCCCAACAAAGAAAGCAAG 58.543 45.455 0.00 0.00 0.00 4.01
744 747 7.520119 TTTGTAGATTGCTAGTGATACAACG 57.480 36.000 0.00 0.00 34.02 4.10
765 768 1.402325 GCGAAAAGGAACCCGGATTTG 60.402 52.381 0.73 0.00 0.00 2.32
771 793 2.211353 TTTTTGCGAAAAGGAACCCG 57.789 45.000 7.81 0.00 31.41 5.28
877 902 3.184206 GAAATGGTTCGGCCCGTC 58.816 61.111 1.63 0.00 36.04 4.79
887 1292 2.046314 CCCAGGACGCGAAATGGT 60.046 61.111 15.93 0.00 0.00 3.55
946 1351 0.318762 GTGTGGACTGGACTCTGACC 59.681 60.000 0.00 0.00 0.00 4.02
1313 1763 0.107459 GAGGATCTGGTGGTTCTGGC 60.107 60.000 0.00 0.00 0.00 4.85
1447 4125 1.672356 CTCCGTTGACCCAAGCTGG 60.672 63.158 0.00 0.00 37.25 4.85
1591 4269 0.609406 GAAGCCCTGGGTGGAAGAAC 60.609 60.000 15.56 0.00 38.35 3.01
1785 4464 0.882927 GTAGGTTTGCTGGCACACGA 60.883 55.000 5.90 0.00 0.00 4.35
1803 4485 0.178964 CATGGTCTTTGGGGTGGTGT 60.179 55.000 0.00 0.00 0.00 4.16
1868 4730 1.540435 TACATGGCAGCCTCACACGA 61.540 55.000 14.15 0.00 0.00 4.35
1874 4736 2.620251 TATGTGTACATGGCAGCCTC 57.380 50.000 14.15 0.00 37.15 4.70
1882 4744 5.468072 GCTTCCTCTTCCATATGTGTACATG 59.532 44.000 7.73 0.00 37.15 3.21
1943 4805 2.027561 AGATGGCGCAACTTGGTAGTTA 60.028 45.455 10.83 0.00 42.67 2.24
2059 4921 2.357517 GGATATCTGCCCCGCGTG 60.358 66.667 4.92 0.00 0.00 5.34
2430 5322 8.854614 ATATAATCAGACCAATCCTAGCAAAC 57.145 34.615 0.00 0.00 0.00 2.93
2631 8068 4.253685 TCCTGTTTTGATACAGCACTAGC 58.746 43.478 0.00 0.00 43.31 3.42
2691 8128 7.209471 ACCAACAAAAAGCGAAATAGATACA 57.791 32.000 0.00 0.00 0.00 2.29
2769 8206 1.153025 GATCAGCAGCATCTGGCCA 60.153 57.895 4.71 4.71 46.50 5.36
2792 8232 3.071602 GGACCATCCTCTTAAGCATGCTA 59.928 47.826 23.00 5.12 32.53 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.