Multiple sequence alignment - TraesCS6D01G055700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G055700 chr6D 100.000 3200 0 0 1 3200 26515205 26518404 0.000000e+00 5910.0
1 TraesCS6D01G055700 chr6D 96.832 2841 73 7 369 3200 26531560 26534392 0.000000e+00 4732.0
2 TraesCS6D01G055700 chr6D 81.983 1654 251 31 683 2303 27033172 27031533 0.000000e+00 1360.0
3 TraesCS6D01G055700 chr6D 79.254 1663 284 40 682 2303 26860916 26859274 0.000000e+00 1103.0
4 TraesCS6D01G055700 chr6D 79.074 1663 287 39 682 2303 26817168 26815526 0.000000e+00 1086.0
5 TraesCS6D01G055700 chr6D 79.014 1663 288 39 682 2303 26897256 26895614 0.000000e+00 1081.0
6 TraesCS6D01G055700 chr6D 95.094 265 10 1 1986 2247 26537368 26537632 6.390000e-112 414.0
7 TraesCS6D01G055700 chr6D 100.000 31 0 0 148 178 44249795 44249825 1.240000e-04 58.4
8 TraesCS6D01G055700 chr6B 79.952 1651 276 38 682 2303 49239076 49237452 0.000000e+00 1164.0
9 TraesCS6D01G055700 chr6B 79.895 1139 199 21 1053 2179 49551756 49552876 0.000000e+00 808.0
10 TraesCS6D01G055700 chr6B 84.644 267 30 7 683 940 49236325 49236061 4.100000e-64 255.0
11 TraesCS6D01G055700 chr6B 83.333 282 38 7 281 557 65985302 65985579 5.300000e-63 252.0
12 TraesCS6D01G055700 chr6B 82.927 246 35 6 682 921 49551086 49551330 6.950000e-52 215.0
13 TraesCS6D01G055700 chr6B 81.250 256 41 7 682 933 49066945 49066693 1.950000e-47 200.0
14 TraesCS6D01G055700 chr6A 79.154 1655 278 38 682 2303 28258886 28257266 0.000000e+00 1083.0
15 TraesCS6D01G055700 chr6A 80.797 1406 241 18 920 2303 28319318 28317920 0.000000e+00 1074.0
16 TraesCS6D01G055700 chr6A 82.411 813 124 14 1496 2301 28317312 28316512 0.000000e+00 691.0
17 TraesCS6D01G055700 chr6A 79.767 257 41 9 1056 1311 47542696 47542450 3.280000e-40 176.0
18 TraesCS6D01G055700 chr6A 79.026 267 46 5 1054 1312 46716755 46716491 1.180000e-39 174.0
19 TraesCS6D01G055700 chr5B 86.989 269 29 5 281 546 687928285 687928550 6.710000e-77 298.0
20 TraesCS6D01G055700 chr5B 85.600 250 29 4 301 547 530933297 530933542 4.100000e-64 255.0
21 TraesCS6D01G055700 chr7A 85.614 285 29 8 280 554 9434559 9434841 4.040000e-74 289.0
22 TraesCS6D01G055700 chr3D 85.870 276 28 5 280 546 35828471 35828198 1.880000e-72 283.0
23 TraesCS6D01G055700 chr2D 86.400 250 30 3 301 546 599396486 599396237 1.460000e-68 270.0
24 TraesCS6D01G055700 chrUn 84.307 274 33 6 281 551 64340657 64340923 3.170000e-65 259.0
25 TraesCS6D01G055700 chrUn 81.226 261 45 4 1054 1312 27364908 27365166 1.160000e-49 207.0
26 TraesCS6D01G055700 chrUn 77.510 249 41 10 992 1231 27447689 27447931 5.570000e-28 135.0
27 TraesCS6D01G055700 chr3A 83.643 269 38 3 279 546 37317028 37317291 6.850000e-62 248.0
28 TraesCS6D01G055700 chr1B 88.439 173 18 2 281 451 77674605 77674777 1.160000e-49 207.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G055700 chr6D 26515205 26518404 3199 False 5910.0 5910 100.000 1 3200 1 chr6D.!!$F1 3199
1 TraesCS6D01G055700 chr6D 26531560 26537632 6072 False 2573.0 4732 95.963 369 3200 2 chr6D.!!$F3 2831
2 TraesCS6D01G055700 chr6D 27031533 27033172 1639 True 1360.0 1360 81.983 683 2303 1 chr6D.!!$R4 1620
3 TraesCS6D01G055700 chr6D 26859274 26860916 1642 True 1103.0 1103 79.254 682 2303 1 chr6D.!!$R2 1621
4 TraesCS6D01G055700 chr6D 26815526 26817168 1642 True 1086.0 1086 79.074 682 2303 1 chr6D.!!$R1 1621
5 TraesCS6D01G055700 chr6D 26895614 26897256 1642 True 1081.0 1081 79.014 682 2303 1 chr6D.!!$R3 1621
6 TraesCS6D01G055700 chr6B 49236061 49239076 3015 True 709.5 1164 82.298 682 2303 2 chr6B.!!$R2 1621
7 TraesCS6D01G055700 chr6B 49551086 49552876 1790 False 511.5 808 81.411 682 2179 2 chr6B.!!$F2 1497
8 TraesCS6D01G055700 chr6A 28257266 28258886 1620 True 1083.0 1083 79.154 682 2303 1 chr6A.!!$R1 1621
9 TraesCS6D01G055700 chr6A 28316512 28319318 2806 True 882.5 1074 81.604 920 2303 2 chr6A.!!$R4 1383

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.027716 ATACAGTACAGACGCGAGCG 59.972 55.0 15.93 16.38 46.03 5.03 F
317 318 0.110147 AGACGCGAGCGCTCATATAC 60.110 55.0 34.69 20.90 44.19 1.47 F
335 336 0.179161 ACACGCGCATAGACTCACTC 60.179 55.0 5.73 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1398 1797 1.394917 CACACTAGAACATGGCGCTTC 59.605 52.381 7.64 2.67 0.00 3.86 R
2085 2487 2.417787 CGACTCAAGATGGAGCATGACA 60.418 50.000 0.00 0.00 38.50 3.58 R
2320 4134 6.319405 ACAGCTGACATGCATTTTCACATATA 59.681 34.615 23.35 0.00 34.99 0.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.978156 TTCTGGCAGTGAAATCCCTT 57.022 45.000 15.27 0.00 0.00 3.95
20 21 2.205022 TCTGGCAGTGAAATCCCTTG 57.795 50.000 15.27 0.00 0.00 3.61
21 22 1.425066 TCTGGCAGTGAAATCCCTTGT 59.575 47.619 15.27 0.00 0.00 3.16
22 23 1.815003 CTGGCAGTGAAATCCCTTGTC 59.185 52.381 6.28 0.00 0.00 3.18
23 24 1.144708 TGGCAGTGAAATCCCTTGTCA 59.855 47.619 0.00 0.00 0.00 3.58
24 25 1.815003 GGCAGTGAAATCCCTTGTCAG 59.185 52.381 0.00 0.00 0.00 3.51
25 26 1.815003 GCAGTGAAATCCCTTGTCAGG 59.185 52.381 0.00 0.00 40.45 3.86
26 27 2.553028 GCAGTGAAATCCCTTGTCAGGA 60.553 50.000 0.00 0.00 44.19 3.86
27 28 3.077359 CAGTGAAATCCCTTGTCAGGAC 58.923 50.000 0.00 0.00 44.19 3.85
28 29 2.076863 GTGAAATCCCTTGTCAGGACG 58.923 52.381 0.00 0.00 44.19 4.79
29 30 1.087501 GAAATCCCTTGTCAGGACGC 58.912 55.000 0.00 0.00 44.19 5.19
30 31 0.322546 AAATCCCTTGTCAGGACGCC 60.323 55.000 0.00 0.00 44.19 5.68
31 32 1.488705 AATCCCTTGTCAGGACGCCA 61.489 55.000 0.00 0.00 44.19 5.69
32 33 1.488705 ATCCCTTGTCAGGACGCCAA 61.489 55.000 0.00 0.00 44.19 4.52
33 34 1.672356 CCCTTGTCAGGACGCCAAG 60.672 63.158 0.00 0.00 44.19 3.61
34 35 2.328099 CCTTGTCAGGACGCCAAGC 61.328 63.158 0.00 0.00 44.19 4.01
35 36 1.302033 CTTGTCAGGACGCCAAGCT 60.302 57.895 0.00 0.00 30.29 3.74
36 37 0.037326 CTTGTCAGGACGCCAAGCTA 60.037 55.000 0.00 0.00 30.29 3.32
37 38 0.037326 TTGTCAGGACGCCAAGCTAG 60.037 55.000 0.00 0.00 0.00 3.42
38 39 1.811679 GTCAGGACGCCAAGCTAGC 60.812 63.158 6.62 6.62 0.00 3.42
39 40 2.265739 CAGGACGCCAAGCTAGCA 59.734 61.111 18.83 0.00 0.00 3.49
40 41 1.153289 CAGGACGCCAAGCTAGCAT 60.153 57.895 18.83 0.65 0.00 3.79
41 42 1.144936 AGGACGCCAAGCTAGCATC 59.855 57.895 18.83 3.08 0.00 3.91
42 43 1.889573 GGACGCCAAGCTAGCATCC 60.890 63.158 18.83 7.88 0.00 3.51
43 44 1.153369 GACGCCAAGCTAGCATCCA 60.153 57.895 18.83 0.00 0.00 3.41
44 45 0.744414 GACGCCAAGCTAGCATCCAA 60.744 55.000 18.83 0.00 0.00 3.53
45 46 1.026718 ACGCCAAGCTAGCATCCAAC 61.027 55.000 18.83 0.00 0.00 3.77
46 47 0.745845 CGCCAAGCTAGCATCCAACT 60.746 55.000 18.83 0.00 0.00 3.16
47 48 1.020437 GCCAAGCTAGCATCCAACTC 58.980 55.000 18.83 0.00 0.00 3.01
48 49 1.407989 GCCAAGCTAGCATCCAACTCT 60.408 52.381 18.83 0.00 0.00 3.24
49 50 2.559440 CCAAGCTAGCATCCAACTCTC 58.441 52.381 18.83 0.00 0.00 3.20
50 51 2.093288 CCAAGCTAGCATCCAACTCTCA 60.093 50.000 18.83 0.00 0.00 3.27
51 52 3.603532 CAAGCTAGCATCCAACTCTCAA 58.396 45.455 18.83 0.00 0.00 3.02
52 53 4.197750 CAAGCTAGCATCCAACTCTCAAT 58.802 43.478 18.83 0.00 0.00 2.57
53 54 4.500499 AGCTAGCATCCAACTCTCAATT 57.500 40.909 18.83 0.00 0.00 2.32
54 55 4.197750 AGCTAGCATCCAACTCTCAATTG 58.802 43.478 18.83 0.00 0.00 2.32
55 56 3.243002 GCTAGCATCCAACTCTCAATTGC 60.243 47.826 10.63 0.00 0.00 3.56
56 57 2.097825 AGCATCCAACTCTCAATTGCC 58.902 47.619 0.00 0.00 0.00 4.52
57 58 1.820519 GCATCCAACTCTCAATTGCCA 59.179 47.619 0.00 0.00 0.00 4.92
58 59 2.231964 GCATCCAACTCTCAATTGCCAA 59.768 45.455 0.00 0.00 0.00 4.52
59 60 3.118884 GCATCCAACTCTCAATTGCCAAT 60.119 43.478 0.00 0.00 0.00 3.16
60 61 4.098349 GCATCCAACTCTCAATTGCCAATA 59.902 41.667 0.00 0.00 0.00 1.90
61 62 5.585390 CATCCAACTCTCAATTGCCAATAC 58.415 41.667 0.00 0.00 0.00 1.89
62 63 4.661222 TCCAACTCTCAATTGCCAATACA 58.339 39.130 0.00 0.00 0.00 2.29
63 64 5.076182 TCCAACTCTCAATTGCCAATACAA 58.924 37.500 0.00 0.00 0.00 2.41
64 65 5.716228 TCCAACTCTCAATTGCCAATACAAT 59.284 36.000 0.00 0.00 42.01 2.71
65 66 6.038356 CCAACTCTCAATTGCCAATACAATC 58.962 40.000 0.00 0.00 39.32 2.67
66 67 6.350361 CCAACTCTCAATTGCCAATACAATCA 60.350 38.462 0.00 0.00 39.32 2.57
67 68 6.199937 ACTCTCAATTGCCAATACAATCAC 57.800 37.500 0.00 0.00 39.32 3.06
68 69 5.126061 ACTCTCAATTGCCAATACAATCACC 59.874 40.000 0.00 0.00 39.32 4.02
69 70 5.263599 TCTCAATTGCCAATACAATCACCT 58.736 37.500 0.00 0.00 39.32 4.00
70 71 5.357878 TCTCAATTGCCAATACAATCACCTC 59.642 40.000 0.00 0.00 39.32 3.85
71 72 5.015515 TCAATTGCCAATACAATCACCTCA 58.984 37.500 0.00 0.00 39.32 3.86
72 73 5.657745 TCAATTGCCAATACAATCACCTCAT 59.342 36.000 0.00 0.00 39.32 2.90
73 74 4.987408 TTGCCAATACAATCACCTCATG 57.013 40.909 0.00 0.00 0.00 3.07
74 75 2.689471 TGCCAATACAATCACCTCATGC 59.311 45.455 0.00 0.00 0.00 4.06
75 76 2.954318 GCCAATACAATCACCTCATGCT 59.046 45.455 0.00 0.00 0.00 3.79
76 77 3.243301 GCCAATACAATCACCTCATGCTG 60.243 47.826 0.00 0.00 0.00 4.41
77 78 3.243301 CCAATACAATCACCTCATGCTGC 60.243 47.826 0.00 0.00 0.00 5.25
78 79 2.785540 TACAATCACCTCATGCTGCA 57.214 45.000 4.13 4.13 0.00 4.41
79 80 1.460504 ACAATCACCTCATGCTGCAG 58.539 50.000 10.11 10.11 0.00 4.41
80 81 1.271762 ACAATCACCTCATGCTGCAGT 60.272 47.619 16.64 0.00 0.00 4.40
81 82 1.816835 CAATCACCTCATGCTGCAGTT 59.183 47.619 16.64 0.00 0.00 3.16
82 83 1.460504 ATCACCTCATGCTGCAGTTG 58.539 50.000 16.64 13.53 0.00 3.16
83 84 1.211969 CACCTCATGCTGCAGTTGC 59.788 57.895 16.64 1.91 42.50 4.17
93 94 4.800355 GCAGTTGCAAGCATAGCC 57.200 55.556 0.00 0.00 41.59 3.93
94 95 1.885157 GCAGTTGCAAGCATAGCCA 59.115 52.632 0.00 0.00 41.59 4.75
95 96 0.457337 GCAGTTGCAAGCATAGCCAC 60.457 55.000 0.00 0.00 41.59 5.01
96 97 0.883153 CAGTTGCAAGCATAGCCACA 59.117 50.000 0.00 0.00 30.72 4.17
97 98 1.270274 CAGTTGCAAGCATAGCCACAA 59.730 47.619 0.00 0.00 30.72 3.33
98 99 1.270550 AGTTGCAAGCATAGCCACAAC 59.729 47.619 0.00 9.83 36.81 3.32
99 100 0.240678 TTGCAAGCATAGCCACAACG 59.759 50.000 0.00 0.00 0.00 4.10
100 101 1.514873 GCAAGCATAGCCACAACGC 60.515 57.895 0.00 0.00 0.00 4.84
101 102 1.875262 CAAGCATAGCCACAACGCA 59.125 52.632 0.00 0.00 0.00 5.24
102 103 0.240678 CAAGCATAGCCACAACGCAA 59.759 50.000 0.00 0.00 0.00 4.85
103 104 0.958091 AAGCATAGCCACAACGCAAA 59.042 45.000 0.00 0.00 0.00 3.68
104 105 0.523072 AGCATAGCCACAACGCAAAG 59.477 50.000 0.00 0.00 0.00 2.77
105 106 0.456653 GCATAGCCACAACGCAAAGG 60.457 55.000 0.00 0.00 0.00 3.11
106 107 0.171007 CATAGCCACAACGCAAAGGG 59.829 55.000 0.00 0.00 0.00 3.95
107 108 0.251165 ATAGCCACAACGCAAAGGGT 60.251 50.000 0.00 0.00 35.74 4.34
108 109 0.887387 TAGCCACAACGCAAAGGGTC 60.887 55.000 0.00 0.00 33.33 4.46
109 110 2.637025 CCACAACGCAAAGGGTCG 59.363 61.111 0.00 0.00 0.00 4.79
110 111 2.637025 CACAACGCAAAGGGTCGG 59.363 61.111 0.00 0.00 0.00 4.79
111 112 1.890041 CACAACGCAAAGGGTCGGA 60.890 57.895 0.00 0.00 0.00 4.55
112 113 1.153127 ACAACGCAAAGGGTCGGAA 60.153 52.632 0.00 0.00 0.00 4.30
113 114 1.164041 ACAACGCAAAGGGTCGGAAG 61.164 55.000 0.00 0.00 0.00 3.46
114 115 1.599797 AACGCAAAGGGTCGGAAGG 60.600 57.895 0.00 0.00 0.00 3.46
115 116 2.047213 AACGCAAAGGGTCGGAAGGA 62.047 55.000 0.00 0.00 0.00 3.36
116 117 1.741770 CGCAAAGGGTCGGAAGGAG 60.742 63.158 0.00 0.00 0.00 3.69
117 118 2.041115 GCAAAGGGTCGGAAGGAGC 61.041 63.158 0.00 0.00 42.48 4.70
118 119 1.374947 CAAAGGGTCGGAAGGAGCA 59.625 57.895 0.00 0.00 45.03 4.26
119 120 0.674895 CAAAGGGTCGGAAGGAGCAG 60.675 60.000 0.00 0.00 45.03 4.24
120 121 2.470938 AAAGGGTCGGAAGGAGCAGC 62.471 60.000 0.00 0.00 45.03 5.25
121 122 3.706373 GGGTCGGAAGGAGCAGCA 61.706 66.667 0.00 0.00 45.03 4.41
122 123 2.125350 GGTCGGAAGGAGCAGCAG 60.125 66.667 0.00 0.00 42.75 4.24
123 124 2.659610 GTCGGAAGGAGCAGCAGT 59.340 61.111 0.00 0.00 0.00 4.40
124 125 1.739562 GTCGGAAGGAGCAGCAGTG 60.740 63.158 0.00 0.00 0.00 3.66
125 126 2.435586 CGGAAGGAGCAGCAGTGG 60.436 66.667 0.00 0.00 0.00 4.00
126 127 2.749441 GGAAGGAGCAGCAGTGGC 60.749 66.667 0.00 0.00 41.61 5.01
127 128 2.033141 GAAGGAGCAGCAGTGGCA 59.967 61.111 0.00 0.00 44.61 4.92
128 129 2.282040 AAGGAGCAGCAGTGGCAC 60.282 61.111 10.29 10.29 44.61 5.01
129 130 3.857309 AAGGAGCAGCAGTGGCACC 62.857 63.158 15.27 0.00 44.61 5.01
130 131 4.648626 GGAGCAGCAGTGGCACCA 62.649 66.667 15.27 0.00 44.61 4.17
131 132 3.360340 GAGCAGCAGTGGCACCAC 61.360 66.667 15.27 12.02 46.50 4.16
143 144 4.619227 CACCACCACCGCCGAAGT 62.619 66.667 0.00 0.00 0.00 3.01
144 145 4.619227 ACCACCACCGCCGAAGTG 62.619 66.667 0.00 0.00 34.91 3.16
169 170 4.082523 GTGGCAGCCGCTGACCTA 62.083 66.667 23.74 2.54 39.07 3.08
170 171 3.774528 TGGCAGCCGCTGACCTAG 61.775 66.667 23.74 0.00 39.07 3.02
171 172 3.461773 GGCAGCCGCTGACCTAGA 61.462 66.667 24.80 0.00 32.43 2.43
172 173 2.801631 GGCAGCCGCTGACCTAGAT 61.802 63.158 24.80 0.00 32.43 1.98
173 174 1.300542 GCAGCCGCTGACCTAGATC 60.301 63.158 24.80 0.00 32.44 2.75
174 175 2.021068 GCAGCCGCTGACCTAGATCA 62.021 60.000 24.80 0.00 32.44 2.92
175 176 0.249238 CAGCCGCTGACCTAGATCAC 60.249 60.000 15.74 0.00 32.44 3.06
176 177 1.068250 GCCGCTGACCTAGATCACC 59.932 63.158 0.00 0.00 0.00 4.02
177 178 1.395826 GCCGCTGACCTAGATCACCT 61.396 60.000 0.00 0.00 0.00 4.00
178 179 1.115467 CCGCTGACCTAGATCACCTT 58.885 55.000 0.00 0.00 0.00 3.50
179 180 1.202463 CCGCTGACCTAGATCACCTTG 60.202 57.143 0.00 0.00 0.00 3.61
180 181 1.804372 CGCTGACCTAGATCACCTTGC 60.804 57.143 0.00 0.00 0.00 4.01
181 182 1.208052 GCTGACCTAGATCACCTTGCA 59.792 52.381 0.00 0.00 0.00 4.08
182 183 2.898705 CTGACCTAGATCACCTTGCAC 58.101 52.381 0.00 0.00 0.00 4.57
183 184 1.204704 TGACCTAGATCACCTTGCACG 59.795 52.381 0.00 0.00 0.00 5.34
184 185 1.476891 GACCTAGATCACCTTGCACGA 59.523 52.381 0.00 0.00 0.00 4.35
185 186 1.478510 ACCTAGATCACCTTGCACGAG 59.521 52.381 0.00 0.00 0.00 4.18
186 187 1.478510 CCTAGATCACCTTGCACGAGT 59.521 52.381 0.00 0.00 0.00 4.18
187 188 2.093973 CCTAGATCACCTTGCACGAGTT 60.094 50.000 0.00 0.00 0.00 3.01
188 189 2.086054 AGATCACCTTGCACGAGTTC 57.914 50.000 0.00 0.00 0.00 3.01
189 190 1.620819 AGATCACCTTGCACGAGTTCT 59.379 47.619 0.00 0.00 0.00 3.01
190 191 2.037772 AGATCACCTTGCACGAGTTCTT 59.962 45.455 0.00 0.00 0.00 2.52
191 192 2.325583 TCACCTTGCACGAGTTCTTT 57.674 45.000 0.00 0.00 0.00 2.52
192 193 1.939934 TCACCTTGCACGAGTTCTTTG 59.060 47.619 0.00 0.00 0.00 2.77
193 194 1.670811 CACCTTGCACGAGTTCTTTGT 59.329 47.619 0.00 0.00 0.00 2.83
194 195 2.869801 CACCTTGCACGAGTTCTTTGTA 59.130 45.455 0.00 0.00 0.00 2.41
195 196 3.498397 CACCTTGCACGAGTTCTTTGTAT 59.502 43.478 0.00 0.00 0.00 2.29
196 197 3.498397 ACCTTGCACGAGTTCTTTGTATG 59.502 43.478 0.00 0.00 0.00 2.39
197 198 3.498397 CCTTGCACGAGTTCTTTGTATGT 59.502 43.478 0.00 0.00 0.00 2.29
198 199 4.688879 CCTTGCACGAGTTCTTTGTATGTA 59.311 41.667 0.00 0.00 0.00 2.29
199 200 5.351465 CCTTGCACGAGTTCTTTGTATGTAT 59.649 40.000 0.00 0.00 0.00 2.29
200 201 5.778161 TGCACGAGTTCTTTGTATGTATG 57.222 39.130 0.00 0.00 0.00 2.39
201 202 4.092821 TGCACGAGTTCTTTGTATGTATGC 59.907 41.667 0.00 0.00 0.00 3.14
202 203 4.092821 GCACGAGTTCTTTGTATGTATGCA 59.907 41.667 0.00 0.00 0.00 3.96
203 204 5.725042 GCACGAGTTCTTTGTATGTATGCAG 60.725 44.000 0.00 0.00 0.00 4.41
204 205 5.348724 CACGAGTTCTTTGTATGTATGCAGT 59.651 40.000 0.00 0.00 0.00 4.40
205 206 5.348724 ACGAGTTCTTTGTATGTATGCAGTG 59.651 40.000 0.00 0.00 0.00 3.66
206 207 5.220472 CGAGTTCTTTGTATGTATGCAGTGG 60.220 44.000 0.00 0.00 0.00 4.00
207 208 5.804639 AGTTCTTTGTATGTATGCAGTGGA 58.195 37.500 0.00 0.00 0.00 4.02
208 209 5.877012 AGTTCTTTGTATGTATGCAGTGGAG 59.123 40.000 0.00 0.00 0.00 3.86
209 210 4.769688 TCTTTGTATGTATGCAGTGGAGG 58.230 43.478 0.00 0.00 0.00 4.30
210 211 4.225042 TCTTTGTATGTATGCAGTGGAGGT 59.775 41.667 0.00 0.00 0.00 3.85
211 212 3.541996 TGTATGTATGCAGTGGAGGTG 57.458 47.619 0.00 0.00 0.00 4.00
212 213 2.170397 TGTATGTATGCAGTGGAGGTGG 59.830 50.000 0.00 0.00 0.00 4.61
213 214 1.583556 ATGTATGCAGTGGAGGTGGA 58.416 50.000 0.00 0.00 0.00 4.02
214 215 0.613260 TGTATGCAGTGGAGGTGGAC 59.387 55.000 0.00 0.00 0.00 4.02
215 216 0.460284 GTATGCAGTGGAGGTGGACG 60.460 60.000 0.00 0.00 0.00 4.79
216 217 0.902984 TATGCAGTGGAGGTGGACGT 60.903 55.000 0.00 0.00 0.00 4.34
217 218 0.902984 ATGCAGTGGAGGTGGACGTA 60.903 55.000 0.00 0.00 0.00 3.57
218 219 1.116536 TGCAGTGGAGGTGGACGTAA 61.117 55.000 0.00 0.00 0.00 3.18
219 220 0.669625 GCAGTGGAGGTGGACGTAAC 60.670 60.000 0.00 0.00 0.00 2.50
220 221 0.037605 CAGTGGAGGTGGACGTAACC 60.038 60.000 11.17 11.17 38.03 2.85
221 222 1.190178 AGTGGAGGTGGACGTAACCC 61.190 60.000 14.68 0.59 38.57 4.11
222 223 1.156803 TGGAGGTGGACGTAACCCT 59.843 57.895 14.68 7.57 38.57 4.34
223 224 0.901580 TGGAGGTGGACGTAACCCTC 60.902 60.000 14.68 14.95 42.28 4.30
224 225 1.509923 GAGGTGGACGTAACCCTCG 59.490 63.158 14.68 0.00 38.57 4.63
225 226 0.962356 GAGGTGGACGTAACCCTCGA 60.962 60.000 14.68 0.00 38.57 4.04
226 227 1.213799 GGTGGACGTAACCCTCGAC 59.786 63.158 8.42 0.00 0.00 4.20
227 228 1.246737 GGTGGACGTAACCCTCGACT 61.247 60.000 8.42 0.00 0.00 4.18
228 229 0.600057 GTGGACGTAACCCTCGACTT 59.400 55.000 0.00 0.00 0.00 3.01
229 230 1.000171 GTGGACGTAACCCTCGACTTT 60.000 52.381 0.00 0.00 0.00 2.66
230 231 2.228822 GTGGACGTAACCCTCGACTTTA 59.771 50.000 0.00 0.00 0.00 1.85
231 232 2.228822 TGGACGTAACCCTCGACTTTAC 59.771 50.000 0.00 0.00 0.00 2.01
233 234 1.262882 CGTAACCCTCGACTTTACGC 58.737 55.000 12.79 0.00 40.96 4.42
234 235 1.135575 CGTAACCCTCGACTTTACGCT 60.136 52.381 12.79 0.00 40.96 5.07
235 236 2.257034 GTAACCCTCGACTTTACGCTG 58.743 52.381 0.00 0.00 0.00 5.18
236 237 0.963962 AACCCTCGACTTTACGCTGA 59.036 50.000 0.00 0.00 0.00 4.26
237 238 0.243095 ACCCTCGACTTTACGCTGAC 59.757 55.000 0.00 0.00 0.00 3.51
238 239 0.526662 CCCTCGACTTTACGCTGACT 59.473 55.000 0.00 0.00 0.00 3.41
239 240 1.741706 CCCTCGACTTTACGCTGACTA 59.258 52.381 0.00 0.00 0.00 2.59
240 241 2.163010 CCCTCGACTTTACGCTGACTAA 59.837 50.000 0.00 0.00 0.00 2.24
241 242 3.366679 CCCTCGACTTTACGCTGACTAAA 60.367 47.826 0.00 0.00 0.00 1.85
242 243 3.607209 CCTCGACTTTACGCTGACTAAAC 59.393 47.826 0.00 0.00 0.00 2.01
243 244 3.568538 TCGACTTTACGCTGACTAAACC 58.431 45.455 0.00 0.00 0.00 3.27
244 245 3.004629 TCGACTTTACGCTGACTAAACCA 59.995 43.478 0.00 0.00 0.00 3.67
245 246 3.737266 CGACTTTACGCTGACTAAACCAA 59.263 43.478 0.00 0.00 0.00 3.67
246 247 4.209703 CGACTTTACGCTGACTAAACCAAA 59.790 41.667 0.00 0.00 0.00 3.28
247 248 5.276963 CGACTTTACGCTGACTAAACCAAAA 60.277 40.000 0.00 0.00 0.00 2.44
248 249 6.439675 ACTTTACGCTGACTAAACCAAAAA 57.560 33.333 0.00 0.00 0.00 1.94
249 250 6.260377 ACTTTACGCTGACTAAACCAAAAAC 58.740 36.000 0.00 0.00 0.00 2.43
250 251 6.094464 ACTTTACGCTGACTAAACCAAAAACT 59.906 34.615 0.00 0.00 0.00 2.66
251 252 4.976224 ACGCTGACTAAACCAAAAACTT 57.024 36.364 0.00 0.00 0.00 2.66
252 253 5.319140 ACGCTGACTAAACCAAAAACTTT 57.681 34.783 0.00 0.00 0.00 2.66
253 254 5.099575 ACGCTGACTAAACCAAAAACTTTG 58.900 37.500 0.00 0.00 0.00 2.77
254 255 4.026886 CGCTGACTAAACCAAAAACTTTGC 60.027 41.667 0.00 0.00 0.00 3.68
255 256 4.270084 GCTGACTAAACCAAAAACTTTGCC 59.730 41.667 0.00 0.00 0.00 4.52
256 257 4.760878 TGACTAAACCAAAAACTTTGCCC 58.239 39.130 0.00 0.00 0.00 5.36
257 258 4.468153 TGACTAAACCAAAAACTTTGCCCT 59.532 37.500 0.00 0.00 0.00 5.19
258 259 5.657302 TGACTAAACCAAAAACTTTGCCCTA 59.343 36.000 0.00 0.00 0.00 3.53
259 260 6.156748 ACTAAACCAAAAACTTTGCCCTAG 57.843 37.500 0.00 0.00 0.00 3.02
260 261 3.469008 AACCAAAAACTTTGCCCTAGC 57.531 42.857 0.00 0.00 40.48 3.42
270 271 3.691820 TGCCCTAGCACTACTCTGT 57.308 52.632 0.00 0.00 46.52 3.41
271 272 1.938585 TGCCCTAGCACTACTCTGTT 58.061 50.000 0.00 0.00 46.52 3.16
272 273 2.257207 TGCCCTAGCACTACTCTGTTT 58.743 47.619 0.00 0.00 46.52 2.83
273 274 2.637872 TGCCCTAGCACTACTCTGTTTT 59.362 45.455 0.00 0.00 46.52 2.43
274 275 3.003480 GCCCTAGCACTACTCTGTTTTG 58.997 50.000 0.00 0.00 39.53 2.44
275 276 3.600388 CCCTAGCACTACTCTGTTTTGG 58.400 50.000 0.00 0.00 0.00 3.28
276 277 3.003480 CCTAGCACTACTCTGTTTTGGC 58.997 50.000 0.00 0.00 0.00 4.52
277 278 2.938956 AGCACTACTCTGTTTTGGCT 57.061 45.000 0.00 0.00 0.00 4.75
278 279 2.498167 AGCACTACTCTGTTTTGGCTG 58.502 47.619 0.00 0.00 0.00 4.85
279 280 2.104792 AGCACTACTCTGTTTTGGCTGA 59.895 45.455 0.00 0.00 0.00 4.26
280 281 3.077359 GCACTACTCTGTTTTGGCTGAT 58.923 45.455 0.00 0.00 0.00 2.90
281 282 3.503748 GCACTACTCTGTTTTGGCTGATT 59.496 43.478 0.00 0.00 0.00 2.57
282 283 4.022849 GCACTACTCTGTTTTGGCTGATTT 60.023 41.667 0.00 0.00 0.00 2.17
283 284 5.507985 GCACTACTCTGTTTTGGCTGATTTT 60.508 40.000 0.00 0.00 0.00 1.82
284 285 6.507023 CACTACTCTGTTTTGGCTGATTTTT 58.493 36.000 0.00 0.00 0.00 1.94
306 307 6.621737 TTTTTAATACAGTACAGACGCGAG 57.378 37.500 15.93 4.52 0.00 5.03
307 308 2.190325 AATACAGTACAGACGCGAGC 57.810 50.000 15.93 3.96 0.00 5.03
308 309 0.027716 ATACAGTACAGACGCGAGCG 59.972 55.000 15.93 16.38 46.03 5.03
309 310 2.573341 TACAGTACAGACGCGAGCGC 62.573 60.000 15.93 8.99 44.19 5.92
310 311 3.432588 AGTACAGACGCGAGCGCT 61.433 61.111 15.93 11.27 44.19 5.92
311 312 2.945066 GTACAGACGCGAGCGCTC 60.945 66.667 27.64 27.64 44.19 5.03
312 313 3.428282 TACAGACGCGAGCGCTCA 61.428 61.111 34.69 11.95 44.19 4.26
313 314 2.761195 TACAGACGCGAGCGCTCAT 61.761 57.895 34.69 20.69 44.19 2.90
314 315 1.433837 TACAGACGCGAGCGCTCATA 61.434 55.000 34.69 13.09 44.19 2.15
315 316 1.371022 CAGACGCGAGCGCTCATAT 60.371 57.895 34.69 19.95 44.19 1.78
316 317 0.110192 CAGACGCGAGCGCTCATATA 60.110 55.000 34.69 0.00 44.19 0.86
317 318 0.110147 AGACGCGAGCGCTCATATAC 60.110 55.000 34.69 20.90 44.19 1.47
318 319 0.385598 GACGCGAGCGCTCATATACA 60.386 55.000 34.69 0.00 44.19 2.29
319 320 0.660595 ACGCGAGCGCTCATATACAC 60.661 55.000 34.69 14.36 44.19 2.90
320 321 1.656586 CGCGAGCGCTCATATACACG 61.657 60.000 34.69 20.77 39.32 4.49
324 325 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
325 326 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
326 327 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
327 328 1.579361 CGCTCATATACACGCGCATAG 59.421 52.381 5.73 0.00 39.11 2.23
328 329 2.727916 CGCTCATATACACGCGCATAGA 60.728 50.000 5.73 0.00 39.11 1.98
329 330 2.594654 GCTCATATACACGCGCATAGAC 59.405 50.000 5.73 0.00 0.00 2.59
330 331 3.670895 GCTCATATACACGCGCATAGACT 60.671 47.826 5.73 0.00 0.00 3.24
331 332 4.079665 TCATATACACGCGCATAGACTC 57.920 45.455 5.73 0.00 0.00 3.36
332 333 3.500680 TCATATACACGCGCATAGACTCA 59.499 43.478 5.73 0.00 0.00 3.41
333 334 2.121116 ATACACGCGCATAGACTCAC 57.879 50.000 5.73 0.00 0.00 3.51
334 335 1.092348 TACACGCGCATAGACTCACT 58.908 50.000 5.73 0.00 0.00 3.41
335 336 0.179161 ACACGCGCATAGACTCACTC 60.179 55.000 5.73 0.00 0.00 3.51
336 337 0.179163 CACGCGCATAGACTCACTCA 60.179 55.000 5.73 0.00 0.00 3.41
337 338 0.741326 ACGCGCATAGACTCACTCAT 59.259 50.000 5.73 0.00 0.00 2.90
338 339 1.947456 ACGCGCATAGACTCACTCATA 59.053 47.619 5.73 0.00 0.00 2.15
339 340 2.287069 ACGCGCATAGACTCACTCATAC 60.287 50.000 5.73 0.00 0.00 2.39
340 341 2.311462 GCGCATAGACTCACTCATACG 58.689 52.381 0.30 0.00 0.00 3.06
341 342 2.031944 GCGCATAGACTCACTCATACGA 60.032 50.000 0.30 0.00 0.00 3.43
342 343 3.548214 GCGCATAGACTCACTCATACGAA 60.548 47.826 0.30 0.00 0.00 3.85
343 344 3.969352 CGCATAGACTCACTCATACGAAC 59.031 47.826 0.00 0.00 0.00 3.95
344 345 3.969352 GCATAGACTCACTCATACGAACG 59.031 47.826 0.00 0.00 0.00 3.95
345 346 2.546195 AGACTCACTCATACGAACGC 57.454 50.000 0.00 0.00 0.00 4.84
346 347 1.181001 GACTCACTCATACGAACGCG 58.819 55.000 3.53 3.53 44.79 6.01
347 348 0.797249 ACTCACTCATACGAACGCGC 60.797 55.000 5.73 0.00 42.48 6.86
348 349 0.796870 CTCACTCATACGAACGCGCA 60.797 55.000 5.73 0.00 42.48 6.09
349 350 1.068832 TCACTCATACGAACGCGCAC 61.069 55.000 5.73 0.00 42.48 5.34
350 351 1.081041 ACTCATACGAACGCGCACA 60.081 52.632 5.73 0.00 42.48 4.57
351 352 1.340465 CTCATACGAACGCGCACAC 59.660 57.895 5.73 0.00 42.48 3.82
352 353 2.018137 CATACGAACGCGCACACG 59.982 61.111 5.73 11.88 42.48 4.49
362 363 2.544359 CGCACACGCACACACTAC 59.456 61.111 0.00 0.00 38.40 2.73
363 364 2.935955 GCACACGCACACACTACC 59.064 61.111 0.00 0.00 38.36 3.18
364 365 2.604174 GCACACGCACACACTACCC 61.604 63.158 0.00 0.00 38.36 3.69
365 366 1.959226 CACACGCACACACTACCCC 60.959 63.158 0.00 0.00 0.00 4.95
366 367 2.138179 ACACGCACACACTACCCCT 61.138 57.895 0.00 0.00 0.00 4.79
367 368 0.828762 ACACGCACACACTACCCCTA 60.829 55.000 0.00 0.00 0.00 3.53
371 372 1.206132 CGCACACACTACCCCTATGAA 59.794 52.381 0.00 0.00 0.00 2.57
379 380 1.687123 CTACCCCTATGAACACCTCCG 59.313 57.143 0.00 0.00 0.00 4.63
381 382 1.200519 CCCCTATGAACACCTCCGAA 58.799 55.000 0.00 0.00 0.00 4.30
390 391 1.705873 ACACCTCCGAAAGACTGAGT 58.294 50.000 0.00 0.00 0.00 3.41
406 407 4.458397 ACTGAGTTGGCATATCATCTTGG 58.542 43.478 3.00 0.00 0.00 3.61
434 435 1.798813 GAAGTCACCGTAAGCACCTTG 59.201 52.381 0.00 0.00 0.00 3.61
445 446 2.640989 CACCTTGTCGTCGACGGA 59.359 61.111 35.05 20.69 40.29 4.69
476 477 2.201732 TCGAGGAATAAATGCGAGCAC 58.798 47.619 0.00 0.00 0.00 4.40
536 537 2.571653 CCTCTAACCATCCAACCACAGA 59.428 50.000 0.00 0.00 0.00 3.41
569 570 6.222389 CAGTTTTGGCTGATTTTAACCATGA 58.778 36.000 0.00 0.00 38.70 3.07
965 1342 1.019278 GCTCCGCGATTCACTTTGGA 61.019 55.000 8.23 0.00 0.00 3.53
978 1355 1.750778 ACTTTGGACTGGTGTTGCTTG 59.249 47.619 0.00 0.00 0.00 4.01
981 1367 2.564721 GGACTGGTGTTGCTTGGCC 61.565 63.158 0.00 0.00 0.00 5.36
1375 1774 1.033746 CCATGGCCTCGTGCTGATTT 61.034 55.000 3.32 0.00 40.92 2.17
1398 1797 4.695560 GGGAACTCCGAACCACTG 57.304 61.111 0.00 0.00 36.71 3.66
1996 2395 3.435671 GGACACACTACTGAAAATTCCCG 59.564 47.826 0.00 0.00 0.00 5.14
2020 2419 4.044571 TGGATCCAAAGAAAGAAGGACCAT 59.955 41.667 13.46 0.00 31.19 3.55
2083 2485 3.485463 TCCTAGGGACAATAATTGGCG 57.515 47.619 9.46 0.00 40.53 5.69
2085 2487 3.201266 TCCTAGGGACAATAATTGGCGTT 59.799 43.478 9.46 0.00 40.53 4.84
2126 2528 1.867233 GTTGCAGTTCGAGAAGCTTCA 59.133 47.619 27.57 4.98 0.00 3.02
2320 4134 6.485313 TGTTTTCATCTTCGTTGGTTCAGTAT 59.515 34.615 0.00 0.00 0.00 2.12
2344 4219 3.291809 TGTGAAAATGCATGTCAGCTG 57.708 42.857 7.63 7.63 34.99 4.24
2432 4310 5.292589 GTCTCGTGGTAAAACTTGTTGAAGA 59.707 40.000 0.00 0.00 32.98 2.87
2521 4567 0.769247 AAGGTGGCGGGAAGTTTAGT 59.231 50.000 0.00 0.00 0.00 2.24
2771 4847 1.591863 GTATGCCGAGAACCCGCTC 60.592 63.158 0.00 0.00 0.00 5.03
2822 4898 2.093890 CACCACCATTTGCAGCTGATA 58.906 47.619 20.43 1.74 0.00 2.15
2997 5073 4.022329 CCCATGGAGGCCGTTATAAAAATC 60.022 45.833 15.22 0.00 35.39 2.17
3067 5143 1.386533 TGTCCGACGAAGGATCTACC 58.613 55.000 0.00 0.00 43.04 3.18
3129 5205 1.376037 CCGTTCCTCTGTTGGCCTC 60.376 63.158 3.32 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.158475 ACAAGGGATTTCACTGCCAGAA 60.158 45.455 0.00 0.00 0.00 3.02
1 2 1.425066 ACAAGGGATTTCACTGCCAGA 59.575 47.619 0.00 0.00 0.00 3.86
2 3 1.815003 GACAAGGGATTTCACTGCCAG 59.185 52.381 0.00 0.00 0.00 4.85
3 4 1.144708 TGACAAGGGATTTCACTGCCA 59.855 47.619 0.00 0.00 0.00 4.92
4 5 1.815003 CTGACAAGGGATTTCACTGCC 59.185 52.381 0.00 0.00 0.00 4.85
5 6 1.815003 CCTGACAAGGGATTTCACTGC 59.185 52.381 0.00 0.00 40.27 4.40
6 7 3.077359 GTCCTGACAAGGGATTTCACTG 58.923 50.000 0.00 0.00 44.62 3.66
7 8 2.289694 CGTCCTGACAAGGGATTTCACT 60.290 50.000 0.00 0.00 44.62 3.41
8 9 2.076863 CGTCCTGACAAGGGATTTCAC 58.923 52.381 0.00 0.00 44.62 3.18
9 10 1.610624 GCGTCCTGACAAGGGATTTCA 60.611 52.381 0.00 0.00 44.62 2.69
10 11 1.087501 GCGTCCTGACAAGGGATTTC 58.912 55.000 0.00 0.00 44.62 2.17
11 12 0.322546 GGCGTCCTGACAAGGGATTT 60.323 55.000 0.00 0.00 44.62 2.17
12 13 1.299976 GGCGTCCTGACAAGGGATT 59.700 57.895 0.00 0.00 44.62 3.01
13 14 1.488705 TTGGCGTCCTGACAAGGGAT 61.489 55.000 0.00 0.00 41.98 3.85
14 15 2.144078 TTGGCGTCCTGACAAGGGA 61.144 57.895 0.00 0.00 41.98 4.20
15 16 2.429930 TTGGCGTCCTGACAAGGG 59.570 61.111 0.00 0.00 41.98 3.95
18 19 0.037326 CTAGCTTGGCGTCCTGACAA 60.037 55.000 0.00 0.00 45.67 3.18
19 20 1.591703 CTAGCTTGGCGTCCTGACA 59.408 57.895 0.00 0.00 0.00 3.58
20 21 1.811679 GCTAGCTTGGCGTCCTGAC 60.812 63.158 7.70 0.00 0.00 3.51
21 22 1.617018 ATGCTAGCTTGGCGTCCTGA 61.617 55.000 17.23 0.00 0.00 3.86
22 23 1.153289 ATGCTAGCTTGGCGTCCTG 60.153 57.895 17.23 0.00 0.00 3.86
23 24 1.144936 GATGCTAGCTTGGCGTCCT 59.855 57.895 17.23 0.78 39.13 3.85
24 25 3.724494 GATGCTAGCTTGGCGTCC 58.276 61.111 17.23 0.00 39.13 4.79
25 26 0.744414 TTGGATGCTAGCTTGGCGTC 60.744 55.000 17.23 19.09 42.86 5.19
26 27 1.026718 GTTGGATGCTAGCTTGGCGT 61.027 55.000 17.23 0.00 0.00 5.68
27 28 0.745845 AGTTGGATGCTAGCTTGGCG 60.746 55.000 17.23 0.00 0.00 5.69
28 29 1.020437 GAGTTGGATGCTAGCTTGGC 58.980 55.000 17.23 0.00 0.00 4.52
29 30 2.093288 TGAGAGTTGGATGCTAGCTTGG 60.093 50.000 17.23 0.00 0.00 3.61
30 31 3.257469 TGAGAGTTGGATGCTAGCTTG 57.743 47.619 17.23 0.00 0.00 4.01
31 32 3.988976 TTGAGAGTTGGATGCTAGCTT 57.011 42.857 17.23 9.95 0.00 3.74
32 33 4.197750 CAATTGAGAGTTGGATGCTAGCT 58.802 43.478 17.23 0.83 0.00 3.32
33 34 3.243002 GCAATTGAGAGTTGGATGCTAGC 60.243 47.826 10.34 8.10 0.00 3.42
34 35 3.314635 GGCAATTGAGAGTTGGATGCTAG 59.685 47.826 10.34 0.00 33.09 3.42
35 36 3.282021 GGCAATTGAGAGTTGGATGCTA 58.718 45.455 10.34 0.00 33.09 3.49
36 37 2.097825 GGCAATTGAGAGTTGGATGCT 58.902 47.619 10.34 0.00 33.09 3.79
37 38 1.820519 TGGCAATTGAGAGTTGGATGC 59.179 47.619 10.34 0.00 0.00 3.91
38 39 4.730949 ATTGGCAATTGAGAGTTGGATG 57.269 40.909 10.34 0.00 0.00 3.51
39 40 5.263599 TGTATTGGCAATTGAGAGTTGGAT 58.736 37.500 19.21 0.00 0.00 3.41
40 41 4.661222 TGTATTGGCAATTGAGAGTTGGA 58.339 39.130 19.21 0.00 0.00 3.53
41 42 5.389859 TTGTATTGGCAATTGAGAGTTGG 57.610 39.130 19.21 0.00 0.00 3.77
42 43 6.529125 GTGATTGTATTGGCAATTGAGAGTTG 59.471 38.462 19.21 0.00 38.98 3.16
43 44 6.350445 GGTGATTGTATTGGCAATTGAGAGTT 60.350 38.462 19.21 0.00 38.98 3.01
44 45 5.126061 GGTGATTGTATTGGCAATTGAGAGT 59.874 40.000 19.21 0.00 38.98 3.24
45 46 5.359009 AGGTGATTGTATTGGCAATTGAGAG 59.641 40.000 19.21 0.00 38.98 3.20
46 47 5.263599 AGGTGATTGTATTGGCAATTGAGA 58.736 37.500 19.21 0.00 38.98 3.27
47 48 5.125900 TGAGGTGATTGTATTGGCAATTGAG 59.874 40.000 19.21 0.00 38.98 3.02
48 49 5.015515 TGAGGTGATTGTATTGGCAATTGA 58.984 37.500 19.21 5.23 38.98 2.57
49 50 5.327616 TGAGGTGATTGTATTGGCAATTG 57.672 39.130 19.21 0.00 38.98 2.32
50 51 5.682990 GCATGAGGTGATTGTATTGGCAATT 60.683 40.000 19.21 0.00 38.98 2.32
51 52 4.202182 GCATGAGGTGATTGTATTGGCAAT 60.202 41.667 18.01 18.01 41.28 3.56
52 53 3.130869 GCATGAGGTGATTGTATTGGCAA 59.869 43.478 0.68 0.68 0.00 4.52
53 54 2.689471 GCATGAGGTGATTGTATTGGCA 59.311 45.455 0.00 0.00 0.00 4.92
54 55 2.954318 AGCATGAGGTGATTGTATTGGC 59.046 45.455 0.00 0.00 0.00 4.52
55 56 3.243301 GCAGCATGAGGTGATTGTATTGG 60.243 47.826 0.00 0.00 45.95 3.16
56 57 3.379057 TGCAGCATGAGGTGATTGTATTG 59.621 43.478 0.00 0.00 45.95 1.90
57 58 3.623703 TGCAGCATGAGGTGATTGTATT 58.376 40.909 0.00 0.00 45.95 1.89
58 59 3.211865 CTGCAGCATGAGGTGATTGTAT 58.788 45.455 0.00 0.00 45.95 2.29
59 60 2.026915 ACTGCAGCATGAGGTGATTGTA 60.027 45.455 15.27 0.00 45.95 2.41
60 61 1.271762 ACTGCAGCATGAGGTGATTGT 60.272 47.619 15.27 0.00 45.95 2.71
61 62 1.460504 ACTGCAGCATGAGGTGATTG 58.539 50.000 15.27 0.00 45.95 2.67
62 63 1.816835 CAACTGCAGCATGAGGTGATT 59.183 47.619 15.27 0.00 45.95 2.57
63 64 1.460504 CAACTGCAGCATGAGGTGAT 58.539 50.000 15.27 0.00 45.95 3.06
64 65 1.239296 GCAACTGCAGCATGAGGTGA 61.239 55.000 20.84 0.00 45.95 4.02
65 66 1.211969 GCAACTGCAGCATGAGGTG 59.788 57.895 20.84 3.30 45.83 4.00
66 67 3.677527 GCAACTGCAGCATGAGGT 58.322 55.556 20.84 0.00 39.69 3.85
76 77 0.457337 GTGGCTATGCTTGCAACTGC 60.457 55.000 0.00 0.00 42.50 4.40
77 78 0.883153 TGTGGCTATGCTTGCAACTG 59.117 50.000 0.00 0.00 35.52 3.16
78 79 1.270550 GTTGTGGCTATGCTTGCAACT 59.729 47.619 0.00 0.00 35.52 3.16
79 80 1.701704 GTTGTGGCTATGCTTGCAAC 58.298 50.000 0.00 0.00 35.08 4.17
80 81 0.240678 CGTTGTGGCTATGCTTGCAA 59.759 50.000 0.00 0.00 0.00 4.08
81 82 1.875262 CGTTGTGGCTATGCTTGCA 59.125 52.632 0.00 0.00 0.00 4.08
82 83 1.514873 GCGTTGTGGCTATGCTTGC 60.515 57.895 0.00 0.00 0.00 4.01
83 84 0.240678 TTGCGTTGTGGCTATGCTTG 59.759 50.000 0.00 0.00 0.00 4.01
84 85 0.958091 TTTGCGTTGTGGCTATGCTT 59.042 45.000 0.00 0.00 0.00 3.91
85 86 0.523072 CTTTGCGTTGTGGCTATGCT 59.477 50.000 0.00 0.00 0.00 3.79
86 87 0.456653 CCTTTGCGTTGTGGCTATGC 60.457 55.000 0.00 0.00 0.00 3.14
87 88 0.171007 CCCTTTGCGTTGTGGCTATG 59.829 55.000 0.00 0.00 0.00 2.23
88 89 0.251165 ACCCTTTGCGTTGTGGCTAT 60.251 50.000 0.00 0.00 0.00 2.97
89 90 0.887387 GACCCTTTGCGTTGTGGCTA 60.887 55.000 0.00 0.00 0.00 3.93
90 91 2.123897 ACCCTTTGCGTTGTGGCT 60.124 55.556 0.00 0.00 0.00 4.75
91 92 2.335011 GACCCTTTGCGTTGTGGC 59.665 61.111 0.00 0.00 0.00 5.01
92 93 2.637025 CGACCCTTTGCGTTGTGG 59.363 61.111 0.00 0.00 0.00 4.17
93 94 1.440938 TTCCGACCCTTTGCGTTGTG 61.441 55.000 0.00 0.00 0.00 3.33
94 95 1.153127 TTCCGACCCTTTGCGTTGT 60.153 52.632 0.00 0.00 0.00 3.32
95 96 1.574428 CTTCCGACCCTTTGCGTTG 59.426 57.895 0.00 0.00 0.00 4.10
96 97 1.599797 CCTTCCGACCCTTTGCGTT 60.600 57.895 0.00 0.00 0.00 4.84
97 98 2.032071 CCTTCCGACCCTTTGCGT 59.968 61.111 0.00 0.00 0.00 5.24
98 99 1.741770 CTCCTTCCGACCCTTTGCG 60.742 63.158 0.00 0.00 0.00 4.85
99 100 2.041115 GCTCCTTCCGACCCTTTGC 61.041 63.158 0.00 0.00 0.00 3.68
100 101 0.674895 CTGCTCCTTCCGACCCTTTG 60.675 60.000 0.00 0.00 0.00 2.77
101 102 1.679898 CTGCTCCTTCCGACCCTTT 59.320 57.895 0.00 0.00 0.00 3.11
102 103 2.960688 GCTGCTCCTTCCGACCCTT 61.961 63.158 0.00 0.00 0.00 3.95
103 104 3.394836 GCTGCTCCTTCCGACCCT 61.395 66.667 0.00 0.00 0.00 4.34
104 105 3.672295 CTGCTGCTCCTTCCGACCC 62.672 68.421 0.00 0.00 0.00 4.46
105 106 2.125350 CTGCTGCTCCTTCCGACC 60.125 66.667 0.00 0.00 0.00 4.79
106 107 1.739562 CACTGCTGCTCCTTCCGAC 60.740 63.158 0.00 0.00 0.00 4.79
107 108 2.659016 CACTGCTGCTCCTTCCGA 59.341 61.111 0.00 0.00 0.00 4.55
108 109 2.435586 CCACTGCTGCTCCTTCCG 60.436 66.667 0.00 0.00 0.00 4.30
109 110 2.749441 GCCACTGCTGCTCCTTCC 60.749 66.667 0.00 0.00 33.53 3.46
110 111 2.033141 TGCCACTGCTGCTCCTTC 59.967 61.111 0.00 0.00 38.71 3.46
111 112 2.282040 GTGCCACTGCTGCTCCTT 60.282 61.111 0.00 0.00 38.71 3.36
112 113 4.341783 GGTGCCACTGCTGCTCCT 62.342 66.667 0.00 0.00 38.89 3.69
113 114 4.648626 TGGTGCCACTGCTGCTCC 62.649 66.667 0.00 0.00 41.57 4.70
114 115 3.360340 GTGGTGCCACTGCTGCTC 61.360 66.667 13.68 0.00 43.12 4.26
115 116 4.962836 GGTGGTGCCACTGCTGCT 62.963 66.667 19.37 0.00 45.52 4.24
126 127 4.619227 ACTTCGGCGGTGGTGGTG 62.619 66.667 7.21 0.00 0.00 4.17
127 128 4.619227 CACTTCGGCGGTGGTGGT 62.619 66.667 7.21 0.00 0.00 4.16
152 153 4.082523 TAGGTCAGCGGCTGCCAC 62.083 66.667 31.00 22.89 44.31 5.01
153 154 3.774528 CTAGGTCAGCGGCTGCCA 61.775 66.667 31.00 20.92 44.31 4.92
154 155 2.707529 GATCTAGGTCAGCGGCTGCC 62.708 65.000 24.78 25.49 44.31 4.85
155 156 1.300542 GATCTAGGTCAGCGGCTGC 60.301 63.158 24.78 18.50 43.24 5.25
156 157 0.249238 GTGATCTAGGTCAGCGGCTG 60.249 60.000 23.72 23.72 0.00 4.85
157 158 1.395826 GGTGATCTAGGTCAGCGGCT 61.396 60.000 18.79 0.00 36.95 5.52
158 159 1.068250 GGTGATCTAGGTCAGCGGC 59.932 63.158 18.79 1.15 36.95 6.53
161 162 1.208052 TGCAAGGTGATCTAGGTCAGC 59.792 52.381 24.60 24.60 44.70 4.26
162 163 2.736719 CGTGCAAGGTGATCTAGGTCAG 60.737 54.545 5.77 0.00 0.00 3.51
163 164 1.204704 CGTGCAAGGTGATCTAGGTCA 59.795 52.381 0.14 0.14 0.00 4.02
164 165 1.476891 TCGTGCAAGGTGATCTAGGTC 59.523 52.381 0.00 0.00 0.00 3.85
165 166 1.478510 CTCGTGCAAGGTGATCTAGGT 59.521 52.381 0.00 0.00 0.00 3.08
166 167 1.478510 ACTCGTGCAAGGTGATCTAGG 59.521 52.381 0.00 0.00 0.00 3.02
167 168 2.949451 ACTCGTGCAAGGTGATCTAG 57.051 50.000 0.00 0.00 0.00 2.43
168 169 2.826128 AGAACTCGTGCAAGGTGATCTA 59.174 45.455 0.00 0.00 28.10 1.98
169 170 1.620819 AGAACTCGTGCAAGGTGATCT 59.379 47.619 0.00 0.74 0.00 2.75
170 171 2.086054 AGAACTCGTGCAAGGTGATC 57.914 50.000 0.00 0.00 0.00 2.92
171 172 2.549754 CAAAGAACTCGTGCAAGGTGAT 59.450 45.455 0.00 0.00 0.00 3.06
172 173 1.939934 CAAAGAACTCGTGCAAGGTGA 59.060 47.619 0.00 0.00 0.00 4.02
173 174 1.670811 ACAAAGAACTCGTGCAAGGTG 59.329 47.619 0.00 0.00 0.00 4.00
174 175 2.038387 ACAAAGAACTCGTGCAAGGT 57.962 45.000 0.00 0.00 0.00 3.50
175 176 3.498397 ACATACAAAGAACTCGTGCAAGG 59.502 43.478 0.00 0.00 0.00 3.61
176 177 4.732285 ACATACAAAGAACTCGTGCAAG 57.268 40.909 0.00 0.00 0.00 4.01
177 178 5.390461 GCATACATACAAAGAACTCGTGCAA 60.390 40.000 0.00 0.00 0.00 4.08
178 179 4.092821 GCATACATACAAAGAACTCGTGCA 59.907 41.667 0.00 0.00 0.00 4.57
179 180 4.092821 TGCATACATACAAAGAACTCGTGC 59.907 41.667 0.00 0.00 0.00 5.34
180 181 5.348724 ACTGCATACATACAAAGAACTCGTG 59.651 40.000 0.00 0.00 0.00 4.35
181 182 5.348724 CACTGCATACATACAAAGAACTCGT 59.651 40.000 0.00 0.00 0.00 4.18
182 183 5.220472 CCACTGCATACATACAAAGAACTCG 60.220 44.000 0.00 0.00 0.00 4.18
183 184 5.874810 TCCACTGCATACATACAAAGAACTC 59.125 40.000 0.00 0.00 0.00 3.01
184 185 5.804639 TCCACTGCATACATACAAAGAACT 58.195 37.500 0.00 0.00 0.00 3.01
185 186 5.065218 CCTCCACTGCATACATACAAAGAAC 59.935 44.000 0.00 0.00 0.00 3.01
186 187 5.185454 CCTCCACTGCATACATACAAAGAA 58.815 41.667 0.00 0.00 0.00 2.52
187 188 4.225042 ACCTCCACTGCATACATACAAAGA 59.775 41.667 0.00 0.00 0.00 2.52
188 189 4.333649 CACCTCCACTGCATACATACAAAG 59.666 45.833 0.00 0.00 0.00 2.77
189 190 4.260985 CACCTCCACTGCATACATACAAA 58.739 43.478 0.00 0.00 0.00 2.83
190 191 3.370421 CCACCTCCACTGCATACATACAA 60.370 47.826 0.00 0.00 0.00 2.41
191 192 2.170397 CCACCTCCACTGCATACATACA 59.830 50.000 0.00 0.00 0.00 2.29
192 193 2.434336 TCCACCTCCACTGCATACATAC 59.566 50.000 0.00 0.00 0.00 2.39
193 194 2.434336 GTCCACCTCCACTGCATACATA 59.566 50.000 0.00 0.00 0.00 2.29
194 195 1.210478 GTCCACCTCCACTGCATACAT 59.790 52.381 0.00 0.00 0.00 2.29
195 196 0.613260 GTCCACCTCCACTGCATACA 59.387 55.000 0.00 0.00 0.00 2.29
196 197 0.460284 CGTCCACCTCCACTGCATAC 60.460 60.000 0.00 0.00 0.00 2.39
197 198 0.902984 ACGTCCACCTCCACTGCATA 60.903 55.000 0.00 0.00 0.00 3.14
198 199 0.902984 TACGTCCACCTCCACTGCAT 60.903 55.000 0.00 0.00 0.00 3.96
199 200 1.116536 TTACGTCCACCTCCACTGCA 61.117 55.000 0.00 0.00 0.00 4.41
200 201 0.669625 GTTACGTCCACCTCCACTGC 60.670 60.000 0.00 0.00 0.00 4.40
201 202 0.037605 GGTTACGTCCACCTCCACTG 60.038 60.000 9.20 0.00 0.00 3.66
202 203 1.190178 GGGTTACGTCCACCTCCACT 61.190 60.000 14.79 0.00 34.36 4.00
203 204 1.190178 AGGGTTACGTCCACCTCCAC 61.190 60.000 14.79 1.01 34.36 4.02
204 205 0.901580 GAGGGTTACGTCCACCTCCA 60.902 60.000 17.08 0.00 42.87 3.86
205 206 1.895966 GAGGGTTACGTCCACCTCC 59.104 63.158 17.08 7.01 42.87 4.30
206 207 0.962356 TCGAGGGTTACGTCCACCTC 60.962 60.000 17.64 17.64 44.71 3.85
207 208 1.075482 TCGAGGGTTACGTCCACCT 59.925 57.895 14.79 10.11 34.36 4.00
208 209 1.213799 GTCGAGGGTTACGTCCACC 59.786 63.158 8.12 8.12 0.00 4.61
209 210 0.600057 AAGTCGAGGGTTACGTCCAC 59.400 55.000 0.00 0.00 0.00 4.02
210 211 1.331214 AAAGTCGAGGGTTACGTCCA 58.669 50.000 0.00 0.00 0.00 4.02
211 212 2.729156 CGTAAAGTCGAGGGTTACGTCC 60.729 54.545 19.47 0.00 43.06 4.79
212 213 2.509870 CGTAAAGTCGAGGGTTACGTC 58.490 52.381 19.47 0.00 43.06 4.34
213 214 2.619013 CGTAAAGTCGAGGGTTACGT 57.381 50.000 19.47 0.00 43.06 3.57
215 216 2.095059 TCAGCGTAAAGTCGAGGGTTAC 60.095 50.000 0.00 0.00 0.00 2.50
216 217 2.095059 GTCAGCGTAAAGTCGAGGGTTA 60.095 50.000 0.00 0.00 0.00 2.85
217 218 0.963962 TCAGCGTAAAGTCGAGGGTT 59.036 50.000 0.00 0.00 0.00 4.11
218 219 0.243095 GTCAGCGTAAAGTCGAGGGT 59.757 55.000 0.00 0.00 0.00 4.34
219 220 0.526662 AGTCAGCGTAAAGTCGAGGG 59.473 55.000 0.00 0.00 0.00 4.30
220 221 3.482722 TTAGTCAGCGTAAAGTCGAGG 57.517 47.619 0.00 0.00 0.00 4.63
221 222 3.607209 GGTTTAGTCAGCGTAAAGTCGAG 59.393 47.826 0.00 0.00 0.00 4.04
222 223 3.004629 TGGTTTAGTCAGCGTAAAGTCGA 59.995 43.478 0.00 0.00 0.00 4.20
223 224 3.311106 TGGTTTAGTCAGCGTAAAGTCG 58.689 45.455 0.00 0.00 0.00 4.18
224 225 5.662211 TTTGGTTTAGTCAGCGTAAAGTC 57.338 39.130 0.00 0.00 0.00 3.01
225 226 6.094464 AGTTTTTGGTTTAGTCAGCGTAAAGT 59.906 34.615 0.00 0.00 0.00 2.66
226 227 6.492254 AGTTTTTGGTTTAGTCAGCGTAAAG 58.508 36.000 0.00 0.00 0.00 1.85
227 228 6.439675 AGTTTTTGGTTTAGTCAGCGTAAA 57.560 33.333 0.00 0.00 0.00 2.01
228 229 6.439675 AAGTTTTTGGTTTAGTCAGCGTAA 57.560 33.333 0.00 0.00 0.00 3.18
229 230 6.259638 CAAAGTTTTTGGTTTAGTCAGCGTA 58.740 36.000 0.00 0.00 0.00 4.42
230 231 4.976224 AAGTTTTTGGTTTAGTCAGCGT 57.024 36.364 0.00 0.00 0.00 5.07
231 232 4.026886 GCAAAGTTTTTGGTTTAGTCAGCG 60.027 41.667 3.97 0.00 0.00 5.18
232 233 4.270084 GGCAAAGTTTTTGGTTTAGTCAGC 59.730 41.667 3.97 0.00 0.00 4.26
233 234 4.808895 GGGCAAAGTTTTTGGTTTAGTCAG 59.191 41.667 3.97 0.00 0.00 3.51
234 235 4.468153 AGGGCAAAGTTTTTGGTTTAGTCA 59.532 37.500 3.97 0.00 0.00 3.41
235 236 5.018539 AGGGCAAAGTTTTTGGTTTAGTC 57.981 39.130 3.97 0.00 0.00 2.59
236 237 5.452776 GCTAGGGCAAAGTTTTTGGTTTAGT 60.453 40.000 3.97 0.00 38.54 2.24
237 238 4.988540 GCTAGGGCAAAGTTTTTGGTTTAG 59.011 41.667 3.97 0.00 38.54 1.85
238 239 4.406003 TGCTAGGGCAAAGTTTTTGGTTTA 59.594 37.500 3.97 0.00 46.36 2.01
239 240 3.198853 TGCTAGGGCAAAGTTTTTGGTTT 59.801 39.130 3.97 0.00 46.36 3.27
240 241 2.769095 TGCTAGGGCAAAGTTTTTGGTT 59.231 40.909 3.97 0.00 46.36 3.67
241 242 2.393646 TGCTAGGGCAAAGTTTTTGGT 58.606 42.857 3.97 0.00 46.36 3.67
253 254 3.003480 CAAAACAGAGTAGTGCTAGGGC 58.997 50.000 0.00 0.00 39.26 5.19
254 255 3.600388 CCAAAACAGAGTAGTGCTAGGG 58.400 50.000 0.00 0.00 0.00 3.53
255 256 3.003480 GCCAAAACAGAGTAGTGCTAGG 58.997 50.000 0.00 0.00 0.00 3.02
256 257 3.681897 CAGCCAAAACAGAGTAGTGCTAG 59.318 47.826 0.00 0.00 0.00 3.42
257 258 3.323691 TCAGCCAAAACAGAGTAGTGCTA 59.676 43.478 0.00 0.00 0.00 3.49
258 259 2.104792 TCAGCCAAAACAGAGTAGTGCT 59.895 45.455 0.00 0.00 0.00 4.40
259 260 2.494059 TCAGCCAAAACAGAGTAGTGC 58.506 47.619 0.00 0.00 0.00 4.40
260 261 5.695851 AAATCAGCCAAAACAGAGTAGTG 57.304 39.130 0.00 0.00 0.00 2.74
261 262 6.715347 AAAAATCAGCCAAAACAGAGTAGT 57.285 33.333 0.00 0.00 0.00 2.73
283 284 5.061311 GCTCGCGTCTGTACTGTATTAAAAA 59.939 40.000 5.77 0.00 0.00 1.94
284 285 4.560035 GCTCGCGTCTGTACTGTATTAAAA 59.440 41.667 5.77 0.00 0.00 1.52
285 286 4.100529 GCTCGCGTCTGTACTGTATTAAA 58.899 43.478 5.77 0.00 0.00 1.52
286 287 3.688272 GCTCGCGTCTGTACTGTATTAA 58.312 45.455 5.77 0.00 0.00 1.40
287 288 2.286008 CGCTCGCGTCTGTACTGTATTA 60.286 50.000 5.77 0.00 34.35 0.98
288 289 1.531264 CGCTCGCGTCTGTACTGTATT 60.531 52.381 5.77 0.00 34.35 1.89
289 290 0.027716 CGCTCGCGTCTGTACTGTAT 59.972 55.000 5.77 0.00 34.35 2.29
290 291 1.422662 CGCTCGCGTCTGTACTGTA 59.577 57.895 5.77 0.00 34.35 2.74
291 292 2.176055 CGCTCGCGTCTGTACTGT 59.824 61.111 5.77 0.00 34.35 3.55
292 293 3.241059 GCGCTCGCGTCTGTACTG 61.241 66.667 13.18 0.00 42.09 2.74
302 303 1.935065 GCGTGTATATGAGCGCTCGC 61.935 60.000 30.75 24.04 45.48 5.03
303 304 1.656586 CGCGTGTATATGAGCGCTCG 61.657 60.000 30.75 18.58 46.56 5.03
304 305 2.054801 CGCGTGTATATGAGCGCTC 58.945 57.895 30.42 30.42 46.56 5.03
305 306 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
308 309 2.594654 GTCTATGCGCGTGTATATGAGC 59.405 50.000 13.61 0.41 38.85 4.26
309 310 4.084889 AGTCTATGCGCGTGTATATGAG 57.915 45.455 13.61 0.00 0.00 2.90
310 311 3.500680 TGAGTCTATGCGCGTGTATATGA 59.499 43.478 13.61 5.00 0.00 2.15
311 312 3.604198 GTGAGTCTATGCGCGTGTATATG 59.396 47.826 13.61 2.89 0.00 1.78
312 313 3.502595 AGTGAGTCTATGCGCGTGTATAT 59.497 43.478 13.61 0.00 0.00 0.86
313 314 2.876550 AGTGAGTCTATGCGCGTGTATA 59.123 45.455 13.61 6.60 0.00 1.47
314 315 1.676529 AGTGAGTCTATGCGCGTGTAT 59.323 47.619 13.61 4.63 0.00 2.29
315 316 1.063616 GAGTGAGTCTATGCGCGTGTA 59.936 52.381 13.61 0.00 0.00 2.90
316 317 0.179161 GAGTGAGTCTATGCGCGTGT 60.179 55.000 13.61 0.00 0.00 4.49
317 318 0.179163 TGAGTGAGTCTATGCGCGTG 60.179 55.000 13.61 2.35 0.00 5.34
318 319 0.741326 ATGAGTGAGTCTATGCGCGT 59.259 50.000 8.43 7.55 0.00 6.01
319 320 2.311462 GTATGAGTGAGTCTATGCGCG 58.689 52.381 0.00 0.00 0.00 6.86
320 321 2.031944 TCGTATGAGTGAGTCTATGCGC 60.032 50.000 0.00 0.00 0.00 6.09
321 322 3.879932 TCGTATGAGTGAGTCTATGCG 57.120 47.619 0.00 0.00 0.00 4.73
322 323 3.969352 CGTTCGTATGAGTGAGTCTATGC 59.031 47.826 0.00 0.00 0.00 3.14
323 324 3.969352 GCGTTCGTATGAGTGAGTCTATG 59.031 47.826 0.00 0.00 0.00 2.23
324 325 3.303197 CGCGTTCGTATGAGTGAGTCTAT 60.303 47.826 0.00 0.00 0.00 1.98
325 326 2.030091 CGCGTTCGTATGAGTGAGTCTA 59.970 50.000 0.00 0.00 0.00 2.59
326 327 1.202043 CGCGTTCGTATGAGTGAGTCT 60.202 52.381 0.00 0.00 0.00 3.24
327 328 1.181001 CGCGTTCGTATGAGTGAGTC 58.819 55.000 0.00 0.00 0.00 3.36
328 329 0.797249 GCGCGTTCGTATGAGTGAGT 60.797 55.000 8.43 0.00 38.14 3.41
329 330 0.796870 TGCGCGTTCGTATGAGTGAG 60.797 55.000 8.43 0.00 38.14 3.51
330 331 1.068832 GTGCGCGTTCGTATGAGTGA 61.069 55.000 8.43 0.00 38.14 3.41
331 332 1.340465 GTGCGCGTTCGTATGAGTG 59.660 57.895 8.43 0.00 38.14 3.51
332 333 1.081041 TGTGCGCGTTCGTATGAGT 60.081 52.632 8.43 0.00 38.14 3.41
333 334 1.340465 GTGTGCGCGTTCGTATGAG 59.660 57.895 8.43 0.00 38.14 2.90
334 335 2.430146 CGTGTGCGCGTTCGTATGA 61.430 57.895 8.43 0.00 38.14 2.15
335 336 2.018137 CGTGTGCGCGTTCGTATG 59.982 61.111 8.43 0.00 38.14 2.39
346 347 2.604174 GGGTAGTGTGTGCGTGTGC 61.604 63.158 0.00 0.00 43.20 4.57
347 348 1.959226 GGGGTAGTGTGTGCGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
348 349 0.828762 TAGGGGTAGTGTGTGCGTGT 60.829 55.000 0.00 0.00 0.00 4.49
349 350 0.535335 ATAGGGGTAGTGTGTGCGTG 59.465 55.000 0.00 0.00 0.00 5.34
350 351 0.535335 CATAGGGGTAGTGTGTGCGT 59.465 55.000 0.00 0.00 0.00 5.24
351 352 0.821517 TCATAGGGGTAGTGTGTGCG 59.178 55.000 0.00 0.00 0.00 5.34
352 353 2.027561 TGTTCATAGGGGTAGTGTGTGC 60.028 50.000 0.00 0.00 0.00 4.57
353 354 3.596214 GTGTTCATAGGGGTAGTGTGTG 58.404 50.000 0.00 0.00 0.00 3.82
354 355 2.570302 GGTGTTCATAGGGGTAGTGTGT 59.430 50.000 0.00 0.00 0.00 3.72
355 356 2.838202 AGGTGTTCATAGGGGTAGTGTG 59.162 50.000 0.00 0.00 0.00 3.82
356 357 3.105283 GAGGTGTTCATAGGGGTAGTGT 58.895 50.000 0.00 0.00 0.00 3.55
357 358 2.434702 GGAGGTGTTCATAGGGGTAGTG 59.565 54.545 0.00 0.00 0.00 2.74
358 359 2.760581 GGAGGTGTTCATAGGGGTAGT 58.239 52.381 0.00 0.00 0.00 2.73
359 360 1.687123 CGGAGGTGTTCATAGGGGTAG 59.313 57.143 0.00 0.00 0.00 3.18
360 361 1.288633 TCGGAGGTGTTCATAGGGGTA 59.711 52.381 0.00 0.00 0.00 3.69
361 362 0.042131 TCGGAGGTGTTCATAGGGGT 59.958 55.000 0.00 0.00 0.00 4.95
362 363 1.200519 TTCGGAGGTGTTCATAGGGG 58.799 55.000 0.00 0.00 0.00 4.79
363 364 2.500098 TCTTTCGGAGGTGTTCATAGGG 59.500 50.000 0.00 0.00 0.00 3.53
364 365 3.195825 AGTCTTTCGGAGGTGTTCATAGG 59.804 47.826 0.00 0.00 0.00 2.57
365 366 4.082190 TCAGTCTTTCGGAGGTGTTCATAG 60.082 45.833 0.00 0.00 0.00 2.23
366 367 3.830178 TCAGTCTTTCGGAGGTGTTCATA 59.170 43.478 0.00 0.00 0.00 2.15
367 368 2.632996 TCAGTCTTTCGGAGGTGTTCAT 59.367 45.455 0.00 0.00 0.00 2.57
371 372 1.705873 ACTCAGTCTTTCGGAGGTGT 58.294 50.000 0.00 0.00 41.46 4.16
379 380 6.054295 AGATGATATGCCAACTCAGTCTTTC 58.946 40.000 0.00 0.00 0.00 2.62
381 382 5.627182 AGATGATATGCCAACTCAGTCTT 57.373 39.130 0.00 0.00 0.00 3.01
390 391 6.770303 TCGTAAATTCCAAGATGATATGCCAA 59.230 34.615 0.00 0.00 0.00 4.52
434 435 2.435685 TATACGTTTCCGTCGACGAC 57.564 50.000 37.65 25.89 46.28 4.34
445 446 8.007716 CGCATTTATTCCTCGATTTATACGTTT 58.992 33.333 0.00 0.00 0.00 3.60
503 504 3.798515 TGGTTAGAGGGACTGTGGTATT 58.201 45.455 0.00 0.00 41.55 1.89
544 545 4.376146 TGGTTAAAATCAGCCAAAACTGC 58.624 39.130 0.00 0.00 37.59 4.40
546 547 6.418057 TCATGGTTAAAATCAGCCAAAACT 57.582 33.333 0.00 0.00 32.05 2.66
569 570 4.384868 GGTGTACCCCACATAACAAGCTAT 60.385 45.833 0.00 0.00 46.44 2.97
594 595 1.065928 CTAACTAGGACGCCTGCCG 59.934 63.158 8.44 0.91 44.21 5.69
635 636 9.173021 ACGATCAATTATCATAAACACAGGAAA 57.827 29.630 0.00 0.00 33.87 3.13
636 637 8.731275 ACGATCAATTATCATAAACACAGGAA 57.269 30.769 0.00 0.00 33.87 3.36
637 638 9.996554 ATACGATCAATTATCATAAACACAGGA 57.003 29.630 0.00 0.00 33.87 3.86
965 1342 2.697147 ATCGGCCAAGCAACACCAGT 62.697 55.000 2.24 0.00 0.00 4.00
978 1355 3.279875 GATGCGGTGGAATCGGCC 61.280 66.667 0.00 0.00 33.69 6.13
981 1367 3.723172 CAGGATGCGGTGGAATCG 58.277 61.111 0.00 0.00 0.00 3.34
1108 1503 2.743179 GGGGAAGGGATGACGGGTC 61.743 68.421 0.00 0.00 0.00 4.46
1398 1797 1.394917 CACACTAGAACATGGCGCTTC 59.605 52.381 7.64 2.67 0.00 3.86
1979 2378 3.670625 TCCACGGGAATTTTCAGTAGTG 58.329 45.455 0.00 0.00 0.00 2.74
1996 2395 3.759086 GGTCCTTCTTTCTTTGGATCCAC 59.241 47.826 15.91 0.00 0.00 4.02
2020 2419 6.378564 TCGGCAAATCCTATCACCAAAATAAA 59.621 34.615 0.00 0.00 0.00 1.40
2083 2485 3.341823 ACTCAAGATGGAGCATGACAAC 58.658 45.455 0.00 0.00 38.50 3.32
2085 2487 2.417787 CGACTCAAGATGGAGCATGACA 60.418 50.000 0.00 0.00 38.50 3.58
2143 2548 7.259088 AGACACTTTCAAATGGATAGTAGGT 57.741 36.000 0.00 0.00 35.89 3.08
2144 2549 9.265901 CATAGACACTTTCAAATGGATAGTAGG 57.734 37.037 0.00 0.00 35.89 3.18
2320 4134 6.319405 ACAGCTGACATGCATTTTCACATATA 59.681 34.615 23.35 0.00 34.99 0.86
2432 4310 4.942363 ATATGAGCCAAAGCCCATCTAT 57.058 40.909 0.00 0.00 36.78 1.98
2482 4528 4.141251 CCTTTTATACACCTACATGGGCCT 60.141 45.833 4.53 0.00 41.11 5.19
2521 4567 3.708403 TTCGACTCTACTGAGGTGGTA 57.292 47.619 0.00 0.00 44.29 3.25
2655 4731 1.048601 TCCTTCTGTTTGCCGAGAGT 58.951 50.000 0.00 0.00 0.00 3.24
2704 4780 1.468736 GCCGAGTTTGTCTAGTACGGG 60.469 57.143 0.00 0.00 39.38 5.28
2705 4781 1.200716 TGCCGAGTTTGTCTAGTACGG 59.799 52.381 0.00 0.00 41.44 4.02
2806 4882 1.686115 GGGGTATCAGCTGCAAATGGT 60.686 52.381 9.47 0.00 0.00 3.55
2870 4946 2.086869 CCGTTACCTCGTAGAAGTCCA 58.913 52.381 0.00 0.00 31.43 4.02
2896 4972 4.677673 GGGATTTAAATGCCAGCAAGAT 57.322 40.909 28.24 0.00 45.30 2.40
2989 5065 5.200483 TCCGAAATGGCCTCAGATTTTTAT 58.800 37.500 3.32 0.00 37.80 1.40
2997 5073 1.876156 GCTTATCCGAAATGGCCTCAG 59.124 52.381 3.32 0.00 37.80 3.35
3067 5143 1.982073 GACGCATCCCCGCTTGAAAG 61.982 60.000 0.00 0.00 0.00 2.62
3129 5205 3.029074 CACGAGCACAGAAAAAGTTTCG 58.971 45.455 0.00 0.00 32.76 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.