Multiple sequence alignment - TraesCS6D01G055400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G055400 chr6D 100.000 3604 0 0 1 3604 26257391 26253788 0.000000e+00 6656.0
1 TraesCS6D01G055400 chr6D 93.736 447 23 3 1 442 293499827 293499381 0.000000e+00 665.0
2 TraesCS6D01G055400 chr6D 92.809 445 26 5 1 440 47172894 47172451 1.090000e-179 640.0
3 TraesCS6D01G055400 chr6A 90.367 2346 135 43 499 2817 24075965 24073684 0.000000e+00 2996.0
4 TraesCS6D01G055400 chr6A 90.463 367 22 4 3241 3604 24073026 24072670 4.210000e-129 472.0
5 TraesCS6D01G055400 chr6A 93.953 215 12 1 2842 3056 24073610 24073397 1.250000e-84 324.0
6 TraesCS6D01G055400 chr6A 87.013 77 4 3 3128 3200 24073188 24073114 8.290000e-12 82.4
7 TraesCS6D01G055400 chr6A 90.909 55 5 0 3074 3128 24073300 24073246 1.390000e-09 75.0
8 TraesCS6D01G055400 chr6B 89.310 1927 118 32 924 2817 42512223 42510352 0.000000e+00 2337.0
9 TraesCS6D01G055400 chr6B 89.688 417 30 7 481 885 42512636 42512221 1.480000e-143 520.0
10 TraesCS6D01G055400 chr6B 98.624 218 1 1 2551 2766 408953786 408953569 5.640000e-103 385.0
11 TraesCS6D01G055400 chr6B 84.868 304 18 7 3241 3544 42509432 42509157 7.620000e-72 281.0
12 TraesCS6D01G055400 chr6B 81.726 197 12 10 3242 3438 408953333 408953161 3.750000e-30 143.0
13 TraesCS6D01G055400 chr6B 87.963 108 9 2 2817 2924 42510299 42510196 1.360000e-24 124.0
14 TraesCS6D01G055400 chr6B 96.667 60 2 0 3475 3534 408953161 408953102 2.290000e-17 100.0
15 TraesCS6D01G055400 chr2B 88.989 663 60 9 1210 1870 751594585 751593934 0.000000e+00 808.0
16 TraesCS6D01G055400 chr2B 88.562 577 59 6 1296 1870 790049585 790050156 0.000000e+00 693.0
17 TraesCS6D01G055400 chr2B 87.645 518 43 15 990 1506 610245191 610245688 1.860000e-162 582.0
18 TraesCS6D01G055400 chr2B 100.000 51 0 0 2602 2652 2244133 2244083 1.070000e-15 95.3
19 TraesCS6D01G055400 chr1B 88.288 666 65 9 1207 1870 72055877 72056531 0.000000e+00 785.0
20 TraesCS6D01G055400 chr1B 96.170 235 8 1 2582 2816 14711044 14711277 2.030000e-102 383.0
21 TraesCS6D01G055400 chr1B 92.083 240 13 6 2811 3048 14711322 14711557 2.070000e-87 333.0
22 TraesCS6D01G055400 chr5B 89.011 637 57 9 1211 1845 13370235 13369610 0.000000e+00 776.0
23 TraesCS6D01G055400 chr7B 87.915 662 67 10 1211 1870 154309422 154308772 0.000000e+00 767.0
24 TraesCS6D01G055400 chr7B 85.664 565 55 16 945 1506 574903276 574902735 4.040000e-159 571.0
25 TraesCS6D01G055400 chr7B 85.252 556 58 18 952 1506 332564259 332564791 5.260000e-153 551.0
26 TraesCS6D01G055400 chr7B 87.852 461 44 8 1207 1665 702699301 702699751 6.850000e-147 531.0
27 TraesCS6D01G055400 chr7B 81.503 519 74 16 2104 2610 325987263 325986755 1.200000e-109 407.0
28 TraesCS6D01G055400 chr3B 88.851 592 59 6 1281 1870 369047108 369047694 0.000000e+00 721.0
29 TraesCS6D01G055400 chr3B 98.039 51 1 0 2602 2652 800629140 800629090 4.960000e-14 89.8
30 TraesCS6D01G055400 chr7A 95.730 445 14 1 1 440 735940126 735939682 0.000000e+00 712.0
31 TraesCS6D01G055400 chr7A 85.782 422 38 14 945 1362 627408238 627408641 9.250000e-116 427.0
32 TraesCS6D01G055400 chr1D 96.128 439 11 2 1 434 463441354 463441791 0.000000e+00 712.0
33 TraesCS6D01G055400 chr1D 95.111 450 14 6 1 443 463843643 463843195 0.000000e+00 702.0
34 TraesCS6D01G055400 chr1D 94.878 449 15 4 1 443 480707311 480706865 0.000000e+00 695.0
35 TraesCS6D01G055400 chr2D 95.067 446 15 3 1 440 66153553 66153997 0.000000e+00 695.0
36 TraesCS6D01G055400 chr7D 93.394 439 24 4 1 434 613457551 613457989 0.000000e+00 645.0
37 TraesCS6D01G055400 chr7D 81.453 523 73 16 2099 2610 361031013 361031522 1.200000e-109 407.0
38 TraesCS6D01G055400 chr2A 91.236 445 33 5 1 440 652145473 652145916 5.150000e-168 601.0
39 TraesCS6D01G055400 chr4D 87.006 531 54 11 1555 2076 493215943 493216467 5.190000e-163 584.0
40 TraesCS6D01G055400 chr4B 85.893 560 56 15 950 1506 541457863 541457324 3.120000e-160 575.0
41 TraesCS6D01G055400 chr4B 91.453 234 13 7 2817 3048 440302666 440302438 7.510000e-82 315.0
42 TraesCS6D01G055400 chr4B 95.604 91 4 0 2582 2672 440302771 440302681 2.900000e-31 147.0
43 TraesCS6D01G055400 chr5D 87.864 412 29 12 945 1353 289562624 289563017 7.050000e-127 464.0
44 TraesCS6D01G055400 chr5D 91.250 240 15 6 2811 3048 296684620 296684855 4.490000e-84 322.0
45 TraesCS6D01G055400 chr5D 94.949 99 4 1 2718 2816 296684478 296684575 1.730000e-33 154.0
46 TraesCS6D01G055400 chr5D 96.429 56 2 0 2602 2657 296684426 296684481 3.830000e-15 93.5
47 TraesCS6D01G055400 chrUn 100.000 43 0 0 2602 2644 108443206 108443164 2.980000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G055400 chr6D 26253788 26257391 3603 True 6656.000000 6656 100.00000 1 3604 1 chr6D.!!$R1 3603
1 TraesCS6D01G055400 chr6A 24072670 24075965 3295 True 789.880000 2996 90.54100 499 3604 5 chr6A.!!$R1 3105
2 TraesCS6D01G055400 chr6B 42509157 42512636 3479 True 815.500000 2337 87.95725 481 3544 4 chr6B.!!$R1 3063
3 TraesCS6D01G055400 chr6B 408953102 408953786 684 True 209.333333 385 92.33900 2551 3534 3 chr6B.!!$R2 983
4 TraesCS6D01G055400 chr2B 751593934 751594585 651 True 808.000000 808 88.98900 1210 1870 1 chr2B.!!$R2 660
5 TraesCS6D01G055400 chr2B 790049585 790050156 571 False 693.000000 693 88.56200 1296 1870 1 chr2B.!!$F2 574
6 TraesCS6D01G055400 chr1B 72055877 72056531 654 False 785.000000 785 88.28800 1207 1870 1 chr1B.!!$F1 663
7 TraesCS6D01G055400 chr1B 14711044 14711557 513 False 358.000000 383 94.12650 2582 3048 2 chr1B.!!$F2 466
8 TraesCS6D01G055400 chr5B 13369610 13370235 625 True 776.000000 776 89.01100 1211 1845 1 chr5B.!!$R1 634
9 TraesCS6D01G055400 chr7B 154308772 154309422 650 True 767.000000 767 87.91500 1211 1870 1 chr7B.!!$R1 659
10 TraesCS6D01G055400 chr7B 574902735 574903276 541 True 571.000000 571 85.66400 945 1506 1 chr7B.!!$R3 561
11 TraesCS6D01G055400 chr7B 332564259 332564791 532 False 551.000000 551 85.25200 952 1506 1 chr7B.!!$F1 554
12 TraesCS6D01G055400 chr7B 325986755 325987263 508 True 407.000000 407 81.50300 2104 2610 1 chr7B.!!$R2 506
13 TraesCS6D01G055400 chr3B 369047108 369047694 586 False 721.000000 721 88.85100 1281 1870 1 chr3B.!!$F1 589
14 TraesCS6D01G055400 chr7D 361031013 361031522 509 False 407.000000 407 81.45300 2099 2610 1 chr7D.!!$F1 511
15 TraesCS6D01G055400 chr4D 493215943 493216467 524 False 584.000000 584 87.00600 1555 2076 1 chr4D.!!$F1 521
16 TraesCS6D01G055400 chr4B 541457324 541457863 539 True 575.000000 575 85.89300 950 1506 1 chr4B.!!$R1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 344 0.033642 TGTATTGGAACCACGTGCGA 59.966 50.0 10.91 0.0 0.00 5.10 F
919 936 0.036010 CTTGATCTTGCCTCCCGTGT 60.036 55.0 0.00 0.0 0.00 4.49 F
1659 1711 0.107312 ATGCAGCTCGCCAGAAGAAT 60.107 50.0 0.00 0.0 41.33 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2003 2062 0.321671 AGCACGCATCAACTGTAGGT 59.678 50.0 0.0 0.0 0.00 3.08 R
2232 2297 0.741221 GCCTTGTAGGTCTTGAGCCG 60.741 60.0 0.0 0.0 37.80 5.52 R
3058 3228 0.178967 TTCCAGATTGGTGCCTTGCA 60.179 50.0 0.0 0.0 39.03 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.879932 TCATCGTACGCAGACTGATAG 57.120 47.619 11.24 0.00 0.00 2.08
21 22 3.203716 TCATCGTACGCAGACTGATAGT 58.796 45.455 11.24 5.33 0.00 2.12
22 23 4.374399 TCATCGTACGCAGACTGATAGTA 58.626 43.478 11.24 4.34 0.00 1.82
23 24 4.812626 TCATCGTACGCAGACTGATAGTAA 59.187 41.667 11.24 0.00 0.00 2.24
24 25 4.790810 TCGTACGCAGACTGATAGTAAG 57.209 45.455 11.24 9.19 0.00 2.34
25 26 4.186926 TCGTACGCAGACTGATAGTAAGT 58.813 43.478 11.24 0.00 0.00 2.24
26 27 4.633126 TCGTACGCAGACTGATAGTAAGTT 59.367 41.667 11.24 0.00 0.00 2.66
27 28 4.729086 CGTACGCAGACTGATAGTAAGTTG 59.271 45.833 6.65 0.00 0.00 3.16
28 29 3.512680 ACGCAGACTGATAGTAAGTTGC 58.487 45.455 6.65 0.00 32.82 4.17
29 30 3.193691 ACGCAGACTGATAGTAAGTTGCT 59.806 43.478 6.65 0.00 33.41 3.91
30 31 4.177026 CGCAGACTGATAGTAAGTTGCTT 58.823 43.478 6.65 0.00 33.41 3.91
31 32 4.627467 CGCAGACTGATAGTAAGTTGCTTT 59.373 41.667 6.65 0.00 33.41 3.51
32 33 5.220303 CGCAGACTGATAGTAAGTTGCTTTC 60.220 44.000 6.65 1.55 33.41 2.62
33 34 5.064071 GCAGACTGATAGTAAGTTGCTTTCC 59.936 44.000 6.65 0.00 33.11 3.13
34 35 6.402222 CAGACTGATAGTAAGTTGCTTTCCT 58.598 40.000 0.00 0.00 0.00 3.36
35 36 7.548097 CAGACTGATAGTAAGTTGCTTTCCTA 58.452 38.462 0.00 0.00 0.00 2.94
36 37 8.200792 CAGACTGATAGTAAGTTGCTTTCCTAT 58.799 37.037 0.00 0.00 0.00 2.57
37 38 9.422681 AGACTGATAGTAAGTTGCTTTCCTATA 57.577 33.333 0.00 0.00 0.00 1.31
38 39 9.685828 GACTGATAGTAAGTTGCTTTCCTATAG 57.314 37.037 0.00 0.00 0.00 1.31
39 40 8.145122 ACTGATAGTAAGTTGCTTTCCTATAGC 58.855 37.037 0.00 0.00 39.10 2.97
40 41 8.018537 TGATAGTAAGTTGCTTTCCTATAGCA 57.981 34.615 0.00 0.00 46.26 3.49
47 48 4.826274 TGCTTTCCTATAGCACTGAAGT 57.174 40.909 0.00 0.00 43.30 3.01
48 49 5.165961 TGCTTTCCTATAGCACTGAAGTT 57.834 39.130 0.00 0.00 43.30 2.66
49 50 4.937620 TGCTTTCCTATAGCACTGAAGTTG 59.062 41.667 0.00 0.00 43.30 3.16
50 51 4.201861 GCTTTCCTATAGCACTGAAGTTGC 60.202 45.833 0.00 0.00 38.51 4.17
51 52 4.826274 TTCCTATAGCACTGAAGTTGCT 57.174 40.909 1.95 1.95 42.12 3.91
52 53 4.826274 TCCTATAGCACTGAAGTTGCTT 57.174 40.909 1.58 0.00 39.79 3.91
53 54 4.759782 TCCTATAGCACTGAAGTTGCTTC 58.240 43.478 1.58 2.22 40.54 3.86
54 55 3.873952 CCTATAGCACTGAAGTTGCTTCC 59.126 47.826 1.58 0.00 39.51 3.46
55 56 1.795768 TAGCACTGAAGTTGCTTCCG 58.204 50.000 1.58 3.14 39.51 4.30
56 57 0.179045 AGCACTGAAGTTGCTTCCGT 60.179 50.000 6.44 3.72 39.51 4.69
57 58 0.663153 GCACTGAAGTTGCTTCCGTT 59.337 50.000 6.44 0.00 39.51 4.44
58 59 1.065551 GCACTGAAGTTGCTTCCGTTT 59.934 47.619 6.44 0.00 39.51 3.60
59 60 2.854805 GCACTGAAGTTGCTTCCGTTTC 60.855 50.000 6.44 0.00 39.51 2.78
60 61 2.354510 CACTGAAGTTGCTTCCGTTTCA 59.645 45.455 6.44 0.00 39.51 2.69
61 62 2.354821 ACTGAAGTTGCTTCCGTTTCAC 59.645 45.455 6.44 0.00 39.51 3.18
62 63 1.673920 TGAAGTTGCTTCCGTTTCACC 59.326 47.619 6.44 0.00 39.51 4.02
63 64 1.001706 GAAGTTGCTTCCGTTTCACCC 60.002 52.381 0.00 0.00 34.71 4.61
64 65 0.106918 AGTTGCTTCCGTTTCACCCA 60.107 50.000 0.00 0.00 0.00 4.51
65 66 0.741915 GTTGCTTCCGTTTCACCCAA 59.258 50.000 0.00 0.00 0.00 4.12
66 67 1.135333 GTTGCTTCCGTTTCACCCAAA 59.865 47.619 0.00 0.00 0.00 3.28
67 68 1.028905 TGCTTCCGTTTCACCCAAAG 58.971 50.000 0.00 0.00 0.00 2.77
68 69 1.029681 GCTTCCGTTTCACCCAAAGT 58.970 50.000 0.00 0.00 0.00 2.66
69 70 1.407618 GCTTCCGTTTCACCCAAAGTT 59.592 47.619 0.00 0.00 0.00 2.66
70 71 2.798145 GCTTCCGTTTCACCCAAAGTTG 60.798 50.000 0.00 0.00 0.00 3.16
71 72 0.741915 TCCGTTTCACCCAAAGTTGC 59.258 50.000 0.00 0.00 0.00 4.17
72 73 0.744281 CCGTTTCACCCAAAGTTGCT 59.256 50.000 0.00 0.00 0.00 3.91
73 74 1.269051 CCGTTTCACCCAAAGTTGCTC 60.269 52.381 0.00 0.00 0.00 4.26
74 75 1.403679 CGTTTCACCCAAAGTTGCTCA 59.596 47.619 0.00 0.00 0.00 4.26
75 76 2.034558 CGTTTCACCCAAAGTTGCTCAT 59.965 45.455 0.00 0.00 0.00 2.90
76 77 3.252215 CGTTTCACCCAAAGTTGCTCATA 59.748 43.478 0.00 0.00 0.00 2.15
77 78 4.261405 CGTTTCACCCAAAGTTGCTCATAA 60.261 41.667 0.00 0.00 0.00 1.90
78 79 5.596845 GTTTCACCCAAAGTTGCTCATAAA 58.403 37.500 0.00 0.00 0.00 1.40
79 80 5.860941 TTCACCCAAAGTTGCTCATAAAA 57.139 34.783 0.00 0.00 0.00 1.52
80 81 5.860941 TCACCCAAAGTTGCTCATAAAAA 57.139 34.783 0.00 0.00 0.00 1.94
107 108 8.964476 AGTTAGTCAAAACATACTCATATGGG 57.036 34.615 0.00 0.00 42.32 4.00
108 109 8.768397 AGTTAGTCAAAACATACTCATATGGGA 58.232 33.333 10.29 0.00 42.32 4.37
109 110 9.561069 GTTAGTCAAAACATACTCATATGGGAT 57.439 33.333 10.29 0.00 42.32 3.85
110 111 9.778741 TTAGTCAAAACATACTCATATGGGATC 57.221 33.333 10.29 0.00 42.32 3.36
111 112 8.038862 AGTCAAAACATACTCATATGGGATCT 57.961 34.615 10.29 0.00 42.32 2.75
112 113 9.159254 AGTCAAAACATACTCATATGGGATCTA 57.841 33.333 10.29 0.00 42.32 1.98
113 114 9.429359 GTCAAAACATACTCATATGGGATCTAG 57.571 37.037 10.29 0.00 42.32 2.43
114 115 9.159254 TCAAAACATACTCATATGGGATCTAGT 57.841 33.333 10.29 3.64 42.32 2.57
115 116 9.784531 CAAAACATACTCATATGGGATCTAGTT 57.215 33.333 10.29 3.98 42.32 2.24
118 119 9.784531 AACATACTCATATGGGATCTAGTTTTG 57.215 33.333 10.29 5.57 42.32 2.44
119 120 9.159254 ACATACTCATATGGGATCTAGTTTTGA 57.841 33.333 10.29 0.00 42.32 2.69
122 123 8.324191 ACTCATATGGGATCTAGTTTTGAAGA 57.676 34.615 10.29 0.00 0.00 2.87
123 124 8.428063 ACTCATATGGGATCTAGTTTTGAAGAG 58.572 37.037 10.29 0.00 0.00 2.85
124 125 7.220030 TCATATGGGATCTAGTTTTGAAGAGC 58.780 38.462 2.13 0.00 0.00 4.09
125 126 5.707066 ATGGGATCTAGTTTTGAAGAGCT 57.293 39.130 0.00 0.00 0.00 4.09
126 127 5.091261 TGGGATCTAGTTTTGAAGAGCTC 57.909 43.478 5.27 5.27 0.00 4.09
127 128 4.116238 GGGATCTAGTTTTGAAGAGCTCG 58.884 47.826 8.37 0.00 0.00 5.03
128 129 4.382147 GGGATCTAGTTTTGAAGAGCTCGT 60.382 45.833 8.37 4.54 0.00 4.18
129 130 4.801516 GGATCTAGTTTTGAAGAGCTCGTC 59.198 45.833 21.13 21.13 0.00 4.20
130 131 3.822996 TCTAGTTTTGAAGAGCTCGTCG 58.177 45.455 22.12 8.32 0.00 5.12
131 132 1.140816 AGTTTTGAAGAGCTCGTCGC 58.859 50.000 22.12 13.15 39.57 5.19
132 133 0.179272 GTTTTGAAGAGCTCGTCGCG 60.179 55.000 22.12 0.00 45.59 5.87
133 134 0.596600 TTTTGAAGAGCTCGTCGCGT 60.597 50.000 22.12 0.00 45.59 6.01
134 135 1.275471 TTTGAAGAGCTCGTCGCGTG 61.275 55.000 22.12 0.00 45.59 5.34
135 136 2.876645 GAAGAGCTCGTCGCGTGG 60.877 66.667 13.96 0.00 45.59 4.94
136 137 3.324099 GAAGAGCTCGTCGCGTGGA 62.324 63.158 13.96 3.62 45.59 4.02
137 138 2.797866 GAAGAGCTCGTCGCGTGGAA 62.798 60.000 13.96 0.00 45.59 3.53
138 139 3.173240 GAGCTCGTCGCGTGGAAC 61.173 66.667 5.77 0.00 45.59 3.62
139 140 4.719369 AGCTCGTCGCGTGGAACC 62.719 66.667 5.77 0.00 45.59 3.62
141 142 4.351938 CTCGTCGCGTGGAACCCA 62.352 66.667 5.77 0.00 0.00 4.51
142 143 4.351938 TCGTCGCGTGGAACCCAG 62.352 66.667 5.77 0.00 32.34 4.45
148 149 4.308458 CGTGGAACCCAGCCGTGA 62.308 66.667 0.00 0.00 32.34 4.35
149 150 2.112297 GTGGAACCCAGCCGTGAA 59.888 61.111 0.00 0.00 32.34 3.18
150 151 1.527380 GTGGAACCCAGCCGTGAAA 60.527 57.895 0.00 0.00 32.34 2.69
151 152 1.104577 GTGGAACCCAGCCGTGAAAA 61.105 55.000 0.00 0.00 32.34 2.29
152 153 1.104577 TGGAACCCAGCCGTGAAAAC 61.105 55.000 0.00 0.00 0.00 2.43
153 154 1.104577 GGAACCCAGCCGTGAAAACA 61.105 55.000 0.00 0.00 0.00 2.83
154 155 0.741915 GAACCCAGCCGTGAAAACAA 59.258 50.000 0.00 0.00 0.00 2.83
155 156 1.135333 GAACCCAGCCGTGAAAACAAA 59.865 47.619 0.00 0.00 0.00 2.83
156 157 1.408969 ACCCAGCCGTGAAAACAAAT 58.591 45.000 0.00 0.00 0.00 2.32
157 158 1.760029 ACCCAGCCGTGAAAACAAATT 59.240 42.857 0.00 0.00 0.00 1.82
158 159 2.169561 ACCCAGCCGTGAAAACAAATTT 59.830 40.909 0.00 0.00 0.00 1.82
159 160 2.543430 CCCAGCCGTGAAAACAAATTTG 59.457 45.455 16.67 16.67 0.00 2.32
160 161 3.452474 CCAGCCGTGAAAACAAATTTGA 58.548 40.909 24.64 0.00 0.00 2.69
161 162 3.490526 CCAGCCGTGAAAACAAATTTGAG 59.509 43.478 24.64 0.00 0.00 3.02
162 163 4.111916 CAGCCGTGAAAACAAATTTGAGT 58.888 39.130 24.64 9.06 0.00 3.41
163 164 4.566360 CAGCCGTGAAAACAAATTTGAGTT 59.434 37.500 24.64 16.25 0.00 3.01
164 165 5.063312 CAGCCGTGAAAACAAATTTGAGTTT 59.937 36.000 24.64 20.82 39.46 2.66
166 167 5.732185 GCCGTGAAAACAAATTTGAGTTTTG 59.268 36.000 24.64 14.96 45.09 2.44
167 168 6.401581 GCCGTGAAAACAAATTTGAGTTTTGA 60.402 34.615 24.64 12.51 45.09 2.69
168 169 7.676104 GCCGTGAAAACAAATTTGAGTTTTGAT 60.676 33.333 24.64 1.49 45.09 2.57
169 170 7.635587 CCGTGAAAACAAATTTGAGTTTTGATG 59.364 33.333 24.64 17.90 45.09 3.07
170 171 8.379161 CGTGAAAACAAATTTGAGTTTTGATGA 58.621 29.630 24.64 3.74 45.09 2.92
173 174 9.571804 GAAAACAAATTTGAGTTTTGATGATCG 57.428 29.630 24.64 0.00 45.09 3.69
174 175 7.642071 AACAAATTTGAGTTTTGATGATCGG 57.358 32.000 24.64 0.00 37.48 4.18
175 176 6.748132 ACAAATTTGAGTTTTGATGATCGGT 58.252 32.000 24.64 0.00 37.48 4.69
176 177 7.209475 ACAAATTTGAGTTTTGATGATCGGTT 58.791 30.769 24.64 0.00 37.48 4.44
177 178 7.382218 ACAAATTTGAGTTTTGATGATCGGTTC 59.618 33.333 24.64 0.00 37.48 3.62
178 179 6.573664 ATTTGAGTTTTGATGATCGGTTCA 57.426 33.333 0.00 0.00 39.12 3.18
179 180 6.384258 TTTGAGTTTTGATGATCGGTTCAA 57.616 33.333 2.45 2.45 38.03 2.69
180 181 6.384258 TTGAGTTTTGATGATCGGTTCAAA 57.616 33.333 11.90 11.90 39.42 2.69
181 182 6.384258 TGAGTTTTGATGATCGGTTCAAAA 57.616 33.333 19.10 19.10 44.98 2.44
182 183 6.437928 TGAGTTTTGATGATCGGTTCAAAAG 58.562 36.000 21.61 0.00 46.66 2.27
183 184 6.391227 AGTTTTGATGATCGGTTCAAAAGT 57.609 33.333 21.61 21.42 46.66 2.66
184 185 6.805713 AGTTTTGATGATCGGTTCAAAAGTT 58.194 32.000 21.61 14.55 46.00 2.66
185 186 7.936584 AGTTTTGATGATCGGTTCAAAAGTTA 58.063 30.769 21.61 7.15 46.00 2.24
186 187 8.576442 AGTTTTGATGATCGGTTCAAAAGTTAT 58.424 29.630 21.61 11.64 46.00 1.89
187 188 9.834628 GTTTTGATGATCGGTTCAAAAGTTATA 57.165 29.630 21.61 6.40 46.66 0.98
189 190 7.246674 TGATGATCGGTTCAAAAGTTATAGC 57.753 36.000 0.00 0.00 38.03 2.97
190 191 7.047891 TGATGATCGGTTCAAAAGTTATAGCT 58.952 34.615 0.00 0.00 38.03 3.32
191 192 7.552687 TGATGATCGGTTCAAAAGTTATAGCTT 59.447 33.333 0.00 0.00 38.03 3.74
192 193 7.681939 TGATCGGTTCAAAAGTTATAGCTTT 57.318 32.000 8.61 8.61 40.07 3.51
193 194 8.106247 TGATCGGTTCAAAAGTTATAGCTTTT 57.894 30.769 18.40 18.40 46.08 2.27
194 195 8.573035 TGATCGGTTCAAAAGTTATAGCTTTTT 58.427 29.630 20.74 8.17 43.66 1.94
195 196 8.742554 ATCGGTTCAAAAGTTATAGCTTTTTG 57.257 30.769 20.74 16.39 43.66 2.44
196 197 7.932335 TCGGTTCAAAAGTTATAGCTTTTTGA 58.068 30.769 20.74 15.83 43.66 2.69
197 198 8.407064 TCGGTTCAAAAGTTATAGCTTTTTGAA 58.593 29.630 22.88 22.88 43.66 2.69
198 199 9.026074 CGGTTCAAAAGTTATAGCTTTTTGAAA 57.974 29.630 26.06 13.91 43.66 2.69
210 211 8.766493 ATAGCTTTTTGAAATTTTGAAAACGC 57.234 26.923 19.98 19.98 35.30 4.84
211 212 6.606768 AGCTTTTTGAAATTTTGAAAACGCA 58.393 28.000 25.35 7.07 36.70 5.24
212 213 7.080724 AGCTTTTTGAAATTTTGAAAACGCAA 58.919 26.923 25.35 9.29 36.70 4.85
213 214 7.592903 AGCTTTTTGAAATTTTGAAAACGCAAA 59.407 25.926 25.35 13.14 36.70 3.68
214 215 7.678027 GCTTTTTGAAATTTTGAAAACGCAAAC 59.322 29.630 21.55 2.19 37.48 2.93
215 216 8.788409 TTTTTGAAATTTTGAAAACGCAAACT 57.212 23.077 6.08 0.00 37.48 2.66
216 217 9.878599 TTTTTGAAATTTTGAAAACGCAAACTA 57.121 22.222 6.08 4.22 37.48 2.24
217 218 9.878599 TTTTGAAATTTTGAAAACGCAAACTAA 57.121 22.222 11.40 0.33 37.48 2.24
218 219 9.878599 TTTGAAATTTTGAAAACGCAAACTAAA 57.121 22.222 9.06 0.00 37.48 1.85
220 221 9.483062 TGAAATTTTGAAAACGCAAACTAAATG 57.517 25.926 0.00 0.00 37.48 2.32
221 222 7.890879 AATTTTGAAAACGCAAACTAAATGC 57.109 28.000 0.00 0.00 37.48 3.56
222 223 6.408858 TTTTGAAAACGCAAACTAAATGCA 57.591 29.167 0.00 0.00 44.01 3.96
223 224 6.595772 TTTGAAAACGCAAACTAAATGCAT 57.404 29.167 0.00 0.00 44.01 3.96
224 225 5.573296 TGAAAACGCAAACTAAATGCATG 57.427 34.783 0.00 0.00 44.01 4.06
225 226 4.084641 TGAAAACGCAAACTAAATGCATGC 60.085 37.500 11.82 11.82 44.01 4.06
226 227 2.721274 ACGCAAACTAAATGCATGCA 57.279 40.000 25.04 25.04 44.01 3.96
227 228 3.023946 ACGCAAACTAAATGCATGCAA 57.976 38.095 26.68 7.52 44.01 4.08
228 229 2.730928 ACGCAAACTAAATGCATGCAAC 59.269 40.909 26.68 4.89 44.01 4.17
229 230 2.222332 CGCAAACTAAATGCATGCAACG 60.222 45.455 26.68 15.03 44.01 4.10
230 231 2.730928 GCAAACTAAATGCATGCAACGT 59.269 40.909 26.68 15.68 43.29 3.99
231 232 3.422085 GCAAACTAAATGCATGCAACGTG 60.422 43.478 26.68 17.17 43.29 4.49
232 233 2.634982 ACTAAATGCATGCAACGTGG 57.365 45.000 26.68 16.36 0.00 4.94
233 234 1.202114 ACTAAATGCATGCAACGTGGG 59.798 47.619 26.68 14.67 0.00 4.61
234 235 1.472082 CTAAATGCATGCAACGTGGGA 59.528 47.619 26.68 5.11 0.00 4.37
235 236 0.896923 AAATGCATGCAACGTGGGAT 59.103 45.000 26.68 1.67 0.00 3.85
236 237 0.457035 AATGCATGCAACGTGGGATC 59.543 50.000 26.68 0.00 0.00 3.36
237 238 0.394762 ATGCATGCAACGTGGGATCT 60.395 50.000 26.68 0.00 0.00 2.75
238 239 0.608856 TGCATGCAACGTGGGATCTT 60.609 50.000 20.30 0.00 0.00 2.40
239 240 0.179156 GCATGCAACGTGGGATCTTG 60.179 55.000 14.21 0.00 0.00 3.02
240 241 1.167851 CATGCAACGTGGGATCTTGT 58.832 50.000 0.00 0.00 0.00 3.16
241 242 1.541147 CATGCAACGTGGGATCTTGTT 59.459 47.619 0.00 0.00 0.00 2.83
242 243 0.950836 TGCAACGTGGGATCTTGTTG 59.049 50.000 12.40 12.40 43.40 3.33
243 244 0.240945 GCAACGTGGGATCTTGTTGG 59.759 55.000 16.03 4.73 41.43 3.77
244 245 0.881118 CAACGTGGGATCTTGTTGGG 59.119 55.000 0.00 0.00 38.37 4.12
245 246 0.768622 AACGTGGGATCTTGTTGGGA 59.231 50.000 0.00 0.00 0.00 4.37
246 247 0.768622 ACGTGGGATCTTGTTGGGAA 59.231 50.000 0.00 0.00 0.00 3.97
247 248 1.144093 ACGTGGGATCTTGTTGGGAAA 59.856 47.619 0.00 0.00 0.00 3.13
248 249 2.225017 ACGTGGGATCTTGTTGGGAAAT 60.225 45.455 0.00 0.00 0.00 2.17
249 250 2.423538 CGTGGGATCTTGTTGGGAAATC 59.576 50.000 0.00 0.00 0.00 2.17
250 251 3.430453 GTGGGATCTTGTTGGGAAATCA 58.570 45.455 0.00 0.00 0.00 2.57
251 252 3.193479 GTGGGATCTTGTTGGGAAATCAC 59.807 47.826 0.00 0.00 0.00 3.06
252 253 2.423538 GGGATCTTGTTGGGAAATCACG 59.576 50.000 0.00 0.00 0.00 4.35
253 254 3.343617 GGATCTTGTTGGGAAATCACGA 58.656 45.455 0.00 0.00 0.00 4.35
254 255 3.127030 GGATCTTGTTGGGAAATCACGAC 59.873 47.826 0.00 0.00 34.21 4.34
255 256 3.201353 TCTTGTTGGGAAATCACGACA 57.799 42.857 1.50 1.50 41.66 4.35
256 257 3.750371 TCTTGTTGGGAAATCACGACAT 58.250 40.909 6.57 0.00 42.78 3.06
257 258 3.501828 TCTTGTTGGGAAATCACGACATG 59.498 43.478 6.57 9.11 42.78 3.21
258 259 2.158559 TGTTGGGAAATCACGACATGG 58.841 47.619 1.50 0.00 38.67 3.66
259 260 2.224646 TGTTGGGAAATCACGACATGGA 60.225 45.455 1.50 0.00 38.67 3.41
260 261 3.016736 GTTGGGAAATCACGACATGGAT 58.983 45.455 0.00 0.00 33.81 3.41
261 262 2.642427 TGGGAAATCACGACATGGATG 58.358 47.619 0.00 0.00 0.00 3.51
262 263 1.949525 GGGAAATCACGACATGGATGG 59.050 52.381 0.00 0.00 0.00 3.51
263 264 2.421388 GGGAAATCACGACATGGATGGA 60.421 50.000 0.00 0.00 0.00 3.41
264 265 2.614057 GGAAATCACGACATGGATGGAC 59.386 50.000 0.00 0.00 0.00 4.02
265 266 1.939974 AATCACGACATGGATGGACG 58.060 50.000 0.00 0.00 37.57 4.79
266 267 0.530650 ATCACGACATGGATGGACGC 60.531 55.000 0.00 0.00 36.02 5.19
267 268 1.447663 CACGACATGGATGGACGCA 60.448 57.895 0.00 0.00 36.02 5.24
268 269 1.447838 ACGACATGGATGGACGCAC 60.448 57.895 0.00 0.00 36.02 5.34
269 270 1.153568 CGACATGGATGGACGCACT 60.154 57.895 0.00 0.00 0.00 4.40
270 271 1.423721 CGACATGGATGGACGCACTG 61.424 60.000 0.00 0.00 0.00 3.66
271 272 0.108186 GACATGGATGGACGCACTGA 60.108 55.000 0.00 0.00 0.00 3.41
272 273 0.107993 ACATGGATGGACGCACTGAG 60.108 55.000 0.00 0.00 0.00 3.35
273 274 0.176449 CATGGATGGACGCACTGAGA 59.824 55.000 0.00 0.00 0.00 3.27
274 275 0.176680 ATGGATGGACGCACTGAGAC 59.823 55.000 0.00 0.00 0.00 3.36
275 276 1.184970 TGGATGGACGCACTGAGACA 61.185 55.000 0.00 0.00 0.00 3.41
276 277 0.737715 GGATGGACGCACTGAGACAC 60.738 60.000 0.00 0.00 0.00 3.67
277 278 1.073216 GATGGACGCACTGAGACACG 61.073 60.000 0.00 0.00 0.00 4.49
278 279 2.430921 GGACGCACTGAGACACGG 60.431 66.667 0.00 0.00 0.00 4.94
279 280 2.335369 GACGCACTGAGACACGGT 59.665 61.111 0.00 0.00 38.85 4.83
284 285 3.456317 ACTGAGACACGGTGGACC 58.544 61.111 13.48 1.38 36.66 4.46
285 286 1.456892 ACTGAGACACGGTGGACCA 60.457 57.895 13.48 5.85 36.66 4.02
286 287 1.290324 CTGAGACACGGTGGACCAG 59.710 63.158 13.48 11.42 35.14 4.00
287 288 2.048127 GAGACACGGTGGACCAGC 60.048 66.667 13.93 13.93 35.14 4.85
288 289 2.524394 AGACACGGTGGACCAGCT 60.524 61.111 20.92 2.72 35.14 4.24
289 290 2.048127 GACACGGTGGACCAGCTC 60.048 66.667 20.92 8.71 35.14 4.09
290 291 3.591254 GACACGGTGGACCAGCTCC 62.591 68.421 20.92 5.84 39.97 4.70
291 292 3.314331 CACGGTGGACCAGCTCCT 61.314 66.667 20.92 1.10 40.26 3.69
292 293 2.526873 ACGGTGGACCAGCTCCTT 60.527 61.111 20.92 0.00 40.26 3.36
293 294 2.147387 ACGGTGGACCAGCTCCTTT 61.147 57.895 20.92 0.00 40.26 3.11
294 295 1.073199 CGGTGGACCAGCTCCTTTT 59.927 57.895 20.92 0.00 40.26 2.27
295 296 0.537371 CGGTGGACCAGCTCCTTTTT 60.537 55.000 20.92 0.00 40.26 1.94
296 297 1.248486 GGTGGACCAGCTCCTTTTTC 58.752 55.000 16.60 0.00 40.26 2.29
297 298 1.202940 GGTGGACCAGCTCCTTTTTCT 60.203 52.381 16.60 0.00 40.26 2.52
298 299 1.882623 GTGGACCAGCTCCTTTTTCTG 59.117 52.381 0.00 0.00 40.26 3.02
299 300 1.494721 TGGACCAGCTCCTTTTTCTGT 59.505 47.619 0.00 0.00 40.26 3.41
300 301 1.882623 GGACCAGCTCCTTTTTCTGTG 59.117 52.381 0.00 0.00 35.89 3.66
301 302 1.268079 GACCAGCTCCTTTTTCTGTGC 59.732 52.381 0.00 0.00 0.00 4.57
302 303 0.239347 CCAGCTCCTTTTTCTGTGCG 59.761 55.000 0.00 0.00 0.00 5.34
303 304 0.947244 CAGCTCCTTTTTCTGTGCGT 59.053 50.000 0.00 0.00 0.00 5.24
304 305 1.334869 CAGCTCCTTTTTCTGTGCGTT 59.665 47.619 0.00 0.00 0.00 4.84
305 306 2.548057 CAGCTCCTTTTTCTGTGCGTTA 59.452 45.455 0.00 0.00 0.00 3.18
306 307 3.003275 CAGCTCCTTTTTCTGTGCGTTAA 59.997 43.478 0.00 0.00 0.00 2.01
307 308 3.821033 AGCTCCTTTTTCTGTGCGTTAAT 59.179 39.130 0.00 0.00 0.00 1.40
308 309 4.278419 AGCTCCTTTTTCTGTGCGTTAATT 59.722 37.500 0.00 0.00 0.00 1.40
309 310 4.617223 GCTCCTTTTTCTGTGCGTTAATTC 59.383 41.667 0.00 0.00 0.00 2.17
310 311 5.116069 TCCTTTTTCTGTGCGTTAATTCC 57.884 39.130 0.00 0.00 0.00 3.01
311 312 4.825085 TCCTTTTTCTGTGCGTTAATTCCT 59.175 37.500 0.00 0.00 0.00 3.36
312 313 5.300792 TCCTTTTTCTGTGCGTTAATTCCTT 59.699 36.000 0.00 0.00 0.00 3.36
313 314 5.983118 CCTTTTTCTGTGCGTTAATTCCTTT 59.017 36.000 0.00 0.00 0.00 3.11
314 315 6.143919 CCTTTTTCTGTGCGTTAATTCCTTTC 59.856 38.462 0.00 0.00 0.00 2.62
315 316 4.759516 TTCTGTGCGTTAATTCCTTTCC 57.240 40.909 0.00 0.00 0.00 3.13
316 317 2.739913 TCTGTGCGTTAATTCCTTTCCG 59.260 45.455 0.00 0.00 0.00 4.30
317 318 2.482721 CTGTGCGTTAATTCCTTTCCGT 59.517 45.455 0.00 0.00 0.00 4.69
318 319 2.224549 TGTGCGTTAATTCCTTTCCGTG 59.775 45.455 0.00 0.00 0.00 4.94
319 320 1.807742 TGCGTTAATTCCTTTCCGTGG 59.192 47.619 0.00 0.00 0.00 4.94
320 321 1.466866 GCGTTAATTCCTTTCCGTGGC 60.467 52.381 0.00 0.00 0.00 5.01
321 322 1.131693 CGTTAATTCCTTTCCGTGGCC 59.868 52.381 0.00 0.00 0.00 5.36
322 323 2.443416 GTTAATTCCTTTCCGTGGCCT 58.557 47.619 3.32 0.00 0.00 5.19
323 324 2.122783 TAATTCCTTTCCGTGGCCTG 57.877 50.000 3.32 0.00 0.00 4.85
324 325 0.112412 AATTCCTTTCCGTGGCCTGT 59.888 50.000 3.32 0.00 0.00 4.00
325 326 0.609131 ATTCCTTTCCGTGGCCTGTG 60.609 55.000 3.32 0.00 0.00 3.66
326 327 1.990160 TTCCTTTCCGTGGCCTGTGT 61.990 55.000 3.32 0.00 0.00 3.72
327 328 1.122632 TCCTTTCCGTGGCCTGTGTA 61.123 55.000 3.32 0.00 0.00 2.90
328 329 0.035439 CCTTTCCGTGGCCTGTGTAT 60.035 55.000 3.32 0.00 0.00 2.29
329 330 1.613255 CCTTTCCGTGGCCTGTGTATT 60.613 52.381 3.32 0.00 0.00 1.89
330 331 1.468520 CTTTCCGTGGCCTGTGTATTG 59.531 52.381 3.32 0.00 0.00 1.90
331 332 0.322098 TTCCGTGGCCTGTGTATTGG 60.322 55.000 3.32 0.00 0.00 3.16
332 333 1.195442 TCCGTGGCCTGTGTATTGGA 61.195 55.000 3.32 0.00 0.00 3.53
333 334 0.322098 CCGTGGCCTGTGTATTGGAA 60.322 55.000 3.32 0.00 0.00 3.53
334 335 0.802494 CGTGGCCTGTGTATTGGAAC 59.198 55.000 3.32 0.00 0.00 3.62
335 336 1.173913 GTGGCCTGTGTATTGGAACC 58.826 55.000 3.32 0.00 0.00 3.62
336 337 0.774276 TGGCCTGTGTATTGGAACCA 59.226 50.000 3.32 0.00 0.00 3.67
337 338 1.173913 GGCCTGTGTATTGGAACCAC 58.826 55.000 0.00 0.00 0.00 4.16
338 339 0.802494 GCCTGTGTATTGGAACCACG 59.198 55.000 0.00 0.00 31.75 4.94
339 340 1.880646 GCCTGTGTATTGGAACCACGT 60.881 52.381 0.00 0.00 31.75 4.49
340 341 1.804151 CCTGTGTATTGGAACCACGTG 59.196 52.381 9.08 9.08 31.75 4.49
341 342 1.196808 CTGTGTATTGGAACCACGTGC 59.803 52.381 10.91 0.00 31.75 5.34
342 343 0.165079 GTGTATTGGAACCACGTGCG 59.835 55.000 10.91 6.24 0.00 5.34
343 344 0.033642 TGTATTGGAACCACGTGCGA 59.966 50.000 10.91 0.00 0.00 5.10
344 345 0.719465 GTATTGGAACCACGTGCGAG 59.281 55.000 10.91 0.00 0.00 5.03
345 346 0.604073 TATTGGAACCACGTGCGAGA 59.396 50.000 10.91 0.00 0.00 4.04
346 347 0.250124 ATTGGAACCACGTGCGAGAA 60.250 50.000 10.91 0.00 0.00 2.87
347 348 0.462225 TTGGAACCACGTGCGAGAAA 60.462 50.000 10.91 0.00 0.00 2.52
348 349 0.878523 TGGAACCACGTGCGAGAAAG 60.879 55.000 10.91 0.00 0.00 2.62
349 350 0.599204 GGAACCACGTGCGAGAAAGA 60.599 55.000 10.91 0.00 0.00 2.52
350 351 0.784778 GAACCACGTGCGAGAAAGAG 59.215 55.000 10.91 0.00 0.00 2.85
351 352 0.600255 AACCACGTGCGAGAAAGAGG 60.600 55.000 10.91 0.00 0.00 3.69
352 353 2.383527 CCACGTGCGAGAAAGAGGC 61.384 63.158 10.91 0.00 0.00 4.70
353 354 2.430921 ACGTGCGAGAAAGAGGCG 60.431 61.111 0.00 0.00 0.00 5.52
354 355 3.181967 CGTGCGAGAAAGAGGCGG 61.182 66.667 0.00 0.00 0.00 6.13
355 356 2.815647 GTGCGAGAAAGAGGCGGG 60.816 66.667 0.00 0.00 0.00 6.13
356 357 2.994995 TGCGAGAAAGAGGCGGGA 60.995 61.111 0.00 0.00 0.00 5.14
357 358 2.202810 GCGAGAAAGAGGCGGGAG 60.203 66.667 0.00 0.00 0.00 4.30
358 359 2.711922 GCGAGAAAGAGGCGGGAGA 61.712 63.158 0.00 0.00 0.00 3.71
359 360 1.139947 CGAGAAAGAGGCGGGAGAC 59.860 63.158 0.00 0.00 39.17 3.36
360 361 1.595993 CGAGAAAGAGGCGGGAGACA 61.596 60.000 0.00 0.00 44.00 3.41
361 362 0.174617 GAGAAAGAGGCGGGAGACAG 59.825 60.000 0.00 0.00 44.00 3.51
362 363 1.219393 GAAAGAGGCGGGAGACAGG 59.781 63.158 0.00 0.00 44.00 4.00
363 364 1.229209 AAAGAGGCGGGAGACAGGA 60.229 57.895 0.00 0.00 44.00 3.86
364 365 1.261238 AAAGAGGCGGGAGACAGGAG 61.261 60.000 0.00 0.00 44.00 3.69
365 366 3.844090 GAGGCGGGAGACAGGAGC 61.844 72.222 0.00 0.00 44.00 4.70
366 367 4.704103 AGGCGGGAGACAGGAGCA 62.704 66.667 0.00 0.00 44.00 4.26
367 368 3.474570 GGCGGGAGACAGGAGCAT 61.475 66.667 0.00 0.00 38.26 3.79
368 369 2.134287 GGCGGGAGACAGGAGCATA 61.134 63.158 0.00 0.00 38.26 3.14
369 370 1.365633 GCGGGAGACAGGAGCATAG 59.634 63.158 0.00 0.00 0.00 2.23
370 371 1.109920 GCGGGAGACAGGAGCATAGA 61.110 60.000 0.00 0.00 0.00 1.98
371 372 1.403814 CGGGAGACAGGAGCATAGAA 58.596 55.000 0.00 0.00 0.00 2.10
372 373 1.967066 CGGGAGACAGGAGCATAGAAT 59.033 52.381 0.00 0.00 0.00 2.40
373 374 2.366916 CGGGAGACAGGAGCATAGAATT 59.633 50.000 0.00 0.00 0.00 2.17
374 375 3.181461 CGGGAGACAGGAGCATAGAATTT 60.181 47.826 0.00 0.00 0.00 1.82
375 376 4.384940 GGGAGACAGGAGCATAGAATTTC 58.615 47.826 0.00 0.00 0.00 2.17
376 377 4.102367 GGGAGACAGGAGCATAGAATTTCT 59.898 45.833 4.03 4.03 0.00 2.52
377 378 5.397334 GGGAGACAGGAGCATAGAATTTCTT 60.397 44.000 3.86 0.00 0.00 2.52
378 379 5.526846 GGAGACAGGAGCATAGAATTTCTTG 59.473 44.000 3.86 4.56 0.00 3.02
379 380 6.059787 AGACAGGAGCATAGAATTTCTTGT 57.940 37.500 3.86 0.93 33.32 3.16
380 381 6.112058 AGACAGGAGCATAGAATTTCTTGTC 58.888 40.000 13.54 13.54 43.13 3.18
381 382 4.872691 ACAGGAGCATAGAATTTCTTGTCG 59.127 41.667 3.86 0.00 0.00 4.35
382 383 4.872691 CAGGAGCATAGAATTTCTTGTCGT 59.127 41.667 3.86 3.67 0.00 4.34
383 384 4.872691 AGGAGCATAGAATTTCTTGTCGTG 59.127 41.667 3.86 0.00 0.00 4.35
384 385 4.631813 GGAGCATAGAATTTCTTGTCGTGT 59.368 41.667 3.86 0.00 0.00 4.49
385 386 5.810587 GGAGCATAGAATTTCTTGTCGTGTA 59.189 40.000 3.86 0.00 0.00 2.90
386 387 6.019479 GGAGCATAGAATTTCTTGTCGTGTAG 60.019 42.308 3.86 0.00 0.00 2.74
387 388 5.292101 AGCATAGAATTTCTTGTCGTGTAGC 59.708 40.000 3.86 0.00 0.00 3.58
388 389 5.502544 GCATAGAATTTCTTGTCGTGTAGCC 60.503 44.000 3.86 0.00 0.00 3.93
389 390 2.993899 AGAATTTCTTGTCGTGTAGCCG 59.006 45.455 0.00 0.00 0.00 5.52
390 391 1.076332 ATTTCTTGTCGTGTAGCCGC 58.924 50.000 0.00 0.00 0.00 6.53
391 392 0.947180 TTTCTTGTCGTGTAGCCGCC 60.947 55.000 0.00 0.00 0.00 6.13
392 393 2.775032 TTCTTGTCGTGTAGCCGCCC 62.775 60.000 0.00 0.00 0.00 6.13
393 394 4.728102 TTGTCGTGTAGCCGCCCG 62.728 66.667 0.00 0.00 0.00 6.13
407 408 2.885644 CCCGCCATGACGAACGAG 60.886 66.667 1.83 0.00 34.06 4.18
408 409 3.554692 CCGCCATGACGAACGAGC 61.555 66.667 1.83 0.00 34.06 5.03
409 410 3.902063 CGCCATGACGAACGAGCG 61.902 66.667 0.00 0.00 37.39 5.03
410 411 4.210304 GCCATGACGAACGAGCGC 62.210 66.667 0.00 0.00 33.86 5.92
411 412 2.809174 CCATGACGAACGAGCGCA 60.809 61.111 11.47 0.00 33.86 6.09
412 413 2.691522 CATGACGAACGAGCGCAG 59.308 61.111 11.47 5.62 33.86 5.18
426 427 2.860293 GCAGCTGCGCGTTTAAGA 59.140 55.556 25.23 0.00 0.00 2.10
427 428 1.425428 GCAGCTGCGCGTTTAAGAT 59.575 52.632 25.23 0.00 0.00 2.40
428 429 0.179189 GCAGCTGCGCGTTTAAGATT 60.179 50.000 25.23 0.00 0.00 2.40
429 430 1.729149 GCAGCTGCGCGTTTAAGATTT 60.729 47.619 25.23 0.00 0.00 2.17
430 431 2.169179 CAGCTGCGCGTTTAAGATTTC 58.831 47.619 8.43 0.00 0.00 2.17
431 432 1.804151 AGCTGCGCGTTTAAGATTTCA 59.196 42.857 8.43 0.00 0.00 2.69
432 433 2.159653 AGCTGCGCGTTTAAGATTTCAG 60.160 45.455 8.43 3.14 0.00 3.02
433 434 2.774007 CTGCGCGTTTAAGATTTCAGG 58.226 47.619 8.43 0.00 0.00 3.86
434 435 2.147958 TGCGCGTTTAAGATTTCAGGT 58.852 42.857 8.43 0.00 0.00 4.00
435 436 2.550606 TGCGCGTTTAAGATTTCAGGTT 59.449 40.909 8.43 0.00 0.00 3.50
436 437 3.747010 TGCGCGTTTAAGATTTCAGGTTA 59.253 39.130 8.43 0.00 0.00 2.85
437 438 4.393680 TGCGCGTTTAAGATTTCAGGTTAT 59.606 37.500 8.43 0.00 0.00 1.89
438 439 5.106475 TGCGCGTTTAAGATTTCAGGTTATT 60.106 36.000 8.43 0.00 0.00 1.40
439 440 5.798434 GCGCGTTTAAGATTTCAGGTTATTT 59.202 36.000 8.43 0.00 0.00 1.40
440 441 6.021704 GCGCGTTTAAGATTTCAGGTTATTTC 60.022 38.462 8.43 0.00 0.00 2.17
441 442 7.018826 CGCGTTTAAGATTTCAGGTTATTTCA 58.981 34.615 0.00 0.00 0.00 2.69
442 443 7.696453 CGCGTTTAAGATTTCAGGTTATTTCAT 59.304 33.333 0.00 0.00 0.00 2.57
443 444 9.353999 GCGTTTAAGATTTCAGGTTATTTCATT 57.646 29.630 0.00 0.00 0.00 2.57
474 475 9.751542 TTTTTAGCCAATGTTATTTTCGAAGAA 57.248 25.926 0.00 0.00 45.90 2.52
475 476 9.751542 TTTTAGCCAATGTTATTTTCGAAGAAA 57.248 25.926 0.00 0.00 45.90 2.52
476 477 8.736751 TTAGCCAATGTTATTTTCGAAGAAAC 57.263 30.769 0.00 5.29 45.90 2.78
477 478 6.156519 AGCCAATGTTATTTTCGAAGAAACC 58.843 36.000 13.45 0.00 45.90 3.27
478 479 6.015434 AGCCAATGTTATTTTCGAAGAAACCT 60.015 34.615 13.45 4.85 45.90 3.50
479 480 6.645003 GCCAATGTTATTTTCGAAGAAACCTT 59.355 34.615 13.45 9.13 45.90 3.50
550 551 2.107204 ACAAGCCCACTCATTCTTCTGT 59.893 45.455 0.00 0.00 0.00 3.41
585 586 1.746861 CGCTCATACAAAGCCCATGGA 60.747 52.381 15.22 0.00 36.36 3.41
601 602 3.044305 GACCAAGCGCTCGCAAGT 61.044 61.111 12.06 3.62 44.88 3.16
616 617 1.102154 CAAGTGGGCCAATATCGCAA 58.898 50.000 8.40 0.00 0.00 4.85
624 625 1.949525 GCCAATATCGCAACCTCACAT 59.050 47.619 0.00 0.00 0.00 3.21
733 735 1.749258 CCGCAAAACCCTAGCCCTC 60.749 63.158 0.00 0.00 0.00 4.30
771 779 0.599558 CCGTCGTCTCCAGGTTTGTA 59.400 55.000 0.00 0.00 0.00 2.41
781 791 1.137594 CAGGTTTGTACCCCTCCCCA 61.138 60.000 0.00 0.00 46.28 4.96
783 793 0.257905 GGTTTGTACCCCTCCCCATC 59.742 60.000 0.00 0.00 38.60 3.51
788 798 3.096089 TACCCCTCCCCATCCCTCG 62.096 68.421 0.00 0.00 0.00 4.63
822 832 2.126385 ACGAAATGCCGTCGCGTA 60.126 55.556 5.77 0.00 42.27 4.42
886 903 2.223144 CGGCACTTTCTTGTGAATCGAA 59.777 45.455 0.00 0.00 40.12 3.71
911 928 2.705826 CGCGCTCTTGATCTTGCC 59.294 61.111 5.56 0.00 0.00 4.52
912 929 1.812922 CGCGCTCTTGATCTTGCCT 60.813 57.895 5.56 0.00 0.00 4.75
913 930 1.760268 CGCGCTCTTGATCTTGCCTC 61.760 60.000 5.56 0.00 0.00 4.70
914 931 1.435408 GCGCTCTTGATCTTGCCTCC 61.435 60.000 0.00 0.00 0.00 4.30
915 932 0.813210 CGCTCTTGATCTTGCCTCCC 60.813 60.000 0.00 0.00 0.00 4.30
916 933 0.813210 GCTCTTGATCTTGCCTCCCG 60.813 60.000 0.00 0.00 0.00 5.14
917 934 0.539051 CTCTTGATCTTGCCTCCCGT 59.461 55.000 0.00 0.00 0.00 5.28
918 935 0.250234 TCTTGATCTTGCCTCCCGTG 59.750 55.000 0.00 0.00 0.00 4.94
919 936 0.036010 CTTGATCTTGCCTCCCGTGT 60.036 55.000 0.00 0.00 0.00 4.49
920 937 0.400213 TTGATCTTGCCTCCCGTGTT 59.600 50.000 0.00 0.00 0.00 3.32
921 938 0.321564 TGATCTTGCCTCCCGTGTTG 60.322 55.000 0.00 0.00 0.00 3.33
939 956 1.745264 GCTCGCTAGCTTGGATCCT 59.255 57.895 14.23 0.00 45.85 3.24
940 957 0.962489 GCTCGCTAGCTTGGATCCTA 59.038 55.000 14.23 4.17 45.85 2.94
942 959 2.235016 CTCGCTAGCTTGGATCCTAGT 58.765 52.381 21.99 12.56 34.81 2.57
961 979 6.208599 TCCTAGTTTGATTGGTGGATTTGTTC 59.791 38.462 0.00 0.00 0.00 3.18
1203 1250 2.224161 CCTCAGCTAGCATGGGTAGTTC 60.224 54.545 18.83 0.00 36.20 3.01
1240 1287 6.316890 TGATTATGGTGATGTTCATGACTGTG 59.683 38.462 0.00 0.00 0.00 3.66
1277 1324 3.308904 GGGGGTTGAGGTATAAAGTGCTT 60.309 47.826 0.00 0.00 0.00 3.91
1278 1325 4.080186 GGGGGTTGAGGTATAAAGTGCTTA 60.080 45.833 0.00 0.00 0.00 3.09
1303 1350 8.905660 AATAGAATGCCATCTATGATATCTGC 57.094 34.615 3.98 0.00 40.82 4.26
1308 1355 6.864151 TGCCATCTATGATATCTGCTAAGT 57.136 37.500 3.98 0.00 0.00 2.24
1311 1358 7.125356 TGCCATCTATGATATCTGCTAAGTCAT 59.875 37.037 3.98 0.00 34.26 3.06
1320 1367 2.012673 CTGCTAAGTCATTGGGTCAGC 58.987 52.381 0.00 0.00 0.00 4.26
1383 1431 0.656785 GGCTAGACGTCTCTGGTACG 59.343 60.000 23.89 4.24 45.64 3.67
1395 1443 3.445805 TCTCTGGTACGCATGTGTATTGA 59.554 43.478 21.28 16.88 0.00 2.57
1461 1509 5.912955 GTGAGTAACATTTGCACTGGTTTAC 59.087 40.000 1.91 2.46 0.00 2.01
1462 1510 5.825679 TGAGTAACATTTGCACTGGTTTACT 59.174 36.000 9.49 9.49 0.00 2.24
1463 1511 6.320164 TGAGTAACATTTGCACTGGTTTACTT 59.680 34.615 10.42 0.00 0.00 2.24
1464 1512 7.499563 TGAGTAACATTTGCACTGGTTTACTTA 59.500 33.333 10.42 6.33 0.00 2.24
1522 1571 2.366916 AGCAGGGCACAGTAGATGTATC 59.633 50.000 0.00 0.00 41.41 2.24
1574 1625 5.456921 AAGTTACCATCCAATCCACTGAT 57.543 39.130 0.00 0.00 0.00 2.90
1589 1640 7.994425 ATCCACTGATAACATGTTTGTGTTA 57.006 32.000 17.78 10.91 45.55 2.41
1659 1711 0.107312 ATGCAGCTCGCCAGAAGAAT 60.107 50.000 0.00 0.00 41.33 2.40
1860 1912 5.301045 CAGCATCATCAGTTCCCATAATTGT 59.699 40.000 0.00 0.00 0.00 2.71
1863 1915 7.560991 AGCATCATCAGTTCCCATAATTGTTTA 59.439 33.333 0.00 0.00 0.00 2.01
1908 1965 9.862371 TTCAATGTTTGCTAAGAACAGTAAAAA 57.138 25.926 0.00 0.00 40.04 1.94
1931 1988 3.695556 TCCATGGTTGTACATTGCATCAG 59.304 43.478 12.58 0.00 0.00 2.90
1950 2009 6.424812 GCATCAGTTTCTGGCTTATTTTGTTT 59.575 34.615 0.00 0.00 31.51 2.83
1997 2056 6.524734 TCTCTCTGTAGCTTTGAATTGTTCA 58.475 36.000 0.00 0.00 38.04 3.18
2003 2062 1.691434 GCTTTGAATTGTTCACCCCCA 59.309 47.619 0.00 0.00 39.87 4.96
2010 2069 0.768622 TTGTTCACCCCCACCTACAG 59.231 55.000 0.00 0.00 0.00 2.74
2018 2077 0.744414 CCCCACCTACAGTTGATGCG 60.744 60.000 0.00 0.00 0.00 4.73
2025 2084 1.298157 TACAGTTGATGCGTGCTGCC 61.298 55.000 0.00 0.00 45.60 4.85
2063 2125 7.178805 TCAGATGCTAGATGAGATTATCTGCTT 59.821 37.037 0.00 0.00 38.37 3.91
2064 2126 7.820386 CAGATGCTAGATGAGATTATCTGCTTT 59.180 37.037 0.00 0.00 37.91 3.51
2083 2145 7.913297 TCTGCTTTGAAACTATTGTTGTGTTAC 59.087 33.333 0.00 0.00 36.39 2.50
2113 2175 9.064706 AGAACATTCTTTATCATCTGCTAATGG 57.935 33.333 0.00 0.00 32.55 3.16
2232 2297 3.077359 GGTATGCAGTCCAATATCCAGC 58.923 50.000 0.00 0.00 0.00 4.85
2316 2384 7.393234 AGGTATATAGCAGCTTACTCTTCTCTG 59.607 40.741 14.11 0.00 0.00 3.35
2318 2386 5.930837 ATAGCAGCTTACTCTTCTCTGTT 57.069 39.130 0.00 0.00 0.00 3.16
2320 2388 4.314121 AGCAGCTTACTCTTCTCTGTTTG 58.686 43.478 0.00 0.00 0.00 2.93
2334 2402 7.939039 TCTTCTCTGTTTGTTTTACATCTGGAT 59.061 33.333 0.00 0.00 0.00 3.41
2350 2418 5.089970 TCTGGATGTTCTTATGTCTGTGG 57.910 43.478 0.00 0.00 0.00 4.17
2791 2894 7.415592 TCTCTGATCAGTTTCTGTGTATGAT 57.584 36.000 21.92 0.00 33.44 2.45
2850 3018 5.091431 GCTCCTGAGAATTCAAATGTTTCG 58.909 41.667 8.44 0.00 31.69 3.46
2851 3019 5.106555 GCTCCTGAGAATTCAAATGTTTCGA 60.107 40.000 8.44 0.00 31.69 3.71
2953 3122 0.319813 GGGGCCAATAATGCGCAATC 60.320 55.000 17.11 0.00 42.86 2.67
3016 3186 6.822676 TGCATTTTGGAGTTTTGAAAGATGTT 59.177 30.769 0.00 0.00 0.00 2.71
3021 3191 5.350633 TGGAGTTTTGAAAGATGTTTGCTG 58.649 37.500 0.00 0.00 0.00 4.41
3056 3226 5.826643 ACAAATATGTGGAATGTGTAGGGT 58.173 37.500 0.00 0.00 38.69 4.34
3057 3227 5.885912 ACAAATATGTGGAATGTGTAGGGTC 59.114 40.000 0.00 0.00 38.69 4.46
3058 3228 5.975988 AATATGTGGAATGTGTAGGGTCT 57.024 39.130 0.00 0.00 0.00 3.85
3062 3232 1.702401 TGGAATGTGTAGGGTCTGCAA 59.298 47.619 0.00 0.00 0.00 4.08
3063 3233 2.290260 TGGAATGTGTAGGGTCTGCAAG 60.290 50.000 0.00 0.00 0.00 4.01
3082 3699 0.681243 GGCACCAATCTGGAACCTCC 60.681 60.000 0.00 0.00 40.96 4.30
3125 3742 4.390297 GCTTGAAGGAACTCATGTGTACTC 59.610 45.833 0.00 0.00 38.49 2.59
3137 3812 6.946583 ACTCATGTGTACTCCTACTAACTTGA 59.053 38.462 0.00 0.00 0.00 3.02
3138 3813 7.616150 ACTCATGTGTACTCCTACTAACTTGAT 59.384 37.037 0.00 0.00 0.00 2.57
3142 3817 6.952358 TGTGTACTCCTACTAACTTGATCCTT 59.048 38.462 0.00 0.00 0.00 3.36
3143 3818 7.093902 TGTGTACTCCTACTAACTTGATCCTTG 60.094 40.741 0.00 0.00 0.00 3.61
3175 3850 0.033366 ATGCCAAAACTTGCGGGTTC 59.967 50.000 0.00 0.00 0.00 3.62
3176 3851 1.040339 TGCCAAAACTTGCGGGTTCT 61.040 50.000 0.00 0.00 0.00 3.01
3195 3874 1.171549 TGCAAAGCGATGAACCAGCA 61.172 50.000 0.00 0.00 0.00 4.41
3207 3900 3.575805 TGAACCAGCAGGGAAATTTTCT 58.424 40.909 8.93 0.00 41.15 2.52
3220 3913 5.770162 GGGAAATTTTCTGGTCTGAGAAAGA 59.230 40.000 8.93 0.00 41.75 2.52
3228 3921 5.605534 TCTGGTCTGAGAAAGAAACTTCTG 58.394 41.667 0.00 0.00 37.65 3.02
3239 3932 5.764487 AAGAAACTTCTGAAAGGAGCAAG 57.236 39.130 0.00 0.00 46.44 4.01
3245 3971 5.440610 ACTTCTGAAAGGAGCAAGAGAAAA 58.559 37.500 0.00 0.00 46.44 2.29
3260 3986 9.683069 AGCAAGAGAAAACACAATTAATACTTG 57.317 29.630 0.00 0.00 34.83 3.16
3308 4034 2.571548 CAAGAATGCCCACCTGGAC 58.428 57.895 0.00 0.00 37.39 4.02
3322 4048 1.135803 CCTGGACGCGTAAAACCATTG 60.136 52.381 13.97 5.87 0.00 2.82
3338 4064 3.009473 ACCATTGTATGTCAGGTTGCTCT 59.991 43.478 0.00 0.00 0.00 4.09
3442 4171 6.770785 TGTGCATGATAAGGTAATTTCCCTAC 59.229 38.462 0.00 0.00 0.00 3.18
3478 4207 0.593128 AAAACATGGCTCTCGCACAC 59.407 50.000 0.00 0.00 38.10 3.82
3568 4297 1.408969 TTTGCCCAGTTCAGGAAACC 58.591 50.000 0.00 0.00 38.76 3.27
3580 4310 7.253422 CAGTTCAGGAAACCAAATATAGCTTG 58.747 38.462 0.00 0.00 38.76 4.01
3584 4314 4.889995 AGGAAACCAAATATAGCTTGGCTC 59.110 41.667 13.79 11.09 46.20 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.610786 ACTATCAGTCTGCGTACGATG 57.389 47.619 21.65 10.55 0.00 3.84
2 3 4.815308 ACTTACTATCAGTCTGCGTACGAT 59.185 41.667 21.65 3.88 0.00 3.73
3 4 4.186926 ACTTACTATCAGTCTGCGTACGA 58.813 43.478 21.65 3.19 0.00 3.43
4 5 4.533225 ACTTACTATCAGTCTGCGTACG 57.467 45.455 11.84 11.84 0.00 3.67
5 6 4.499758 GCAACTTACTATCAGTCTGCGTAC 59.500 45.833 0.00 0.00 0.00 3.67
6 7 4.398358 AGCAACTTACTATCAGTCTGCGTA 59.602 41.667 0.00 0.00 35.35 4.42
7 8 3.193691 AGCAACTTACTATCAGTCTGCGT 59.806 43.478 0.00 0.00 35.35 5.24
8 9 3.775202 AGCAACTTACTATCAGTCTGCG 58.225 45.455 0.00 0.00 35.35 5.18
9 10 5.064071 GGAAAGCAACTTACTATCAGTCTGC 59.936 44.000 0.00 0.00 32.75 4.26
10 11 6.402222 AGGAAAGCAACTTACTATCAGTCTG 58.598 40.000 0.00 0.00 0.00 3.51
11 12 6.613153 AGGAAAGCAACTTACTATCAGTCT 57.387 37.500 0.00 0.00 0.00 3.24
12 13 9.685828 CTATAGGAAAGCAACTTACTATCAGTC 57.314 37.037 2.23 0.00 31.29 3.51
13 14 8.145122 GCTATAGGAAAGCAACTTACTATCAGT 58.855 37.037 1.04 0.00 39.83 3.41
14 15 8.144478 TGCTATAGGAAAGCAACTTACTATCAG 58.856 37.037 1.04 1.91 46.57 2.90
15 16 8.018537 TGCTATAGGAAAGCAACTTACTATCA 57.981 34.615 1.04 0.00 46.57 2.15
27 28 4.201861 GCAACTTCAGTGCTATAGGAAAGC 60.202 45.833 1.04 0.00 40.50 3.51
28 29 5.181748 AGCAACTTCAGTGCTATAGGAAAG 58.818 41.667 1.04 2.44 37.11 2.62
29 30 5.165961 AGCAACTTCAGTGCTATAGGAAA 57.834 39.130 1.04 0.00 37.11 3.13
30 31 4.826274 AGCAACTTCAGTGCTATAGGAA 57.174 40.909 1.04 0.00 37.11 3.36
31 32 4.383118 GGAAGCAACTTCAGTGCTATAGGA 60.383 45.833 9.38 0.00 41.77 2.94
32 33 3.873952 GGAAGCAACTTCAGTGCTATAGG 59.126 47.826 9.38 0.00 41.77 2.57
33 34 3.553511 CGGAAGCAACTTCAGTGCTATAG 59.446 47.826 9.38 0.00 41.77 1.31
34 35 3.056107 ACGGAAGCAACTTCAGTGCTATA 60.056 43.478 11.47 0.00 44.45 1.31
35 36 2.289694 ACGGAAGCAACTTCAGTGCTAT 60.290 45.455 11.47 0.00 44.45 2.97
36 37 1.070134 ACGGAAGCAACTTCAGTGCTA 59.930 47.619 11.47 0.00 44.45 3.49
37 38 0.179045 ACGGAAGCAACTTCAGTGCT 60.179 50.000 11.47 0.00 44.45 4.40
38 39 0.663153 AACGGAAGCAACTTCAGTGC 59.337 50.000 12.70 0.00 45.13 4.40
39 40 2.354510 TGAAACGGAAGCAACTTCAGTG 59.645 45.455 12.70 3.63 45.13 3.66
41 42 2.287009 GGTGAAACGGAAGCAACTTCAG 60.287 50.000 9.38 7.67 41.77 3.02
42 43 1.673920 GGTGAAACGGAAGCAACTTCA 59.326 47.619 9.38 0.00 41.77 3.02
43 44 1.001706 GGGTGAAACGGAAGCAACTTC 60.002 52.381 0.00 0.00 39.52 3.01
44 45 1.029681 GGGTGAAACGGAAGCAACTT 58.970 50.000 0.00 0.00 38.12 2.66
45 46 0.106918 TGGGTGAAACGGAAGCAACT 60.107 50.000 0.00 0.00 38.12 3.16
46 47 0.741915 TTGGGTGAAACGGAAGCAAC 59.258 50.000 0.00 0.00 38.12 4.17
47 48 1.407258 CTTTGGGTGAAACGGAAGCAA 59.593 47.619 0.00 0.00 38.12 3.91
48 49 1.028905 CTTTGGGTGAAACGGAAGCA 58.971 50.000 0.00 0.00 38.12 3.91
49 50 1.029681 ACTTTGGGTGAAACGGAAGC 58.970 50.000 0.00 0.00 38.12 3.86
50 51 2.798145 GCAACTTTGGGTGAAACGGAAG 60.798 50.000 0.00 0.00 38.12 3.46
51 52 1.135333 GCAACTTTGGGTGAAACGGAA 59.865 47.619 0.00 0.00 38.12 4.30
52 53 0.741915 GCAACTTTGGGTGAAACGGA 59.258 50.000 0.00 0.00 38.12 4.69
53 54 0.744281 AGCAACTTTGGGTGAAACGG 59.256 50.000 0.00 0.00 38.12 4.44
54 55 1.403679 TGAGCAACTTTGGGTGAAACG 59.596 47.619 0.00 0.00 38.12 3.60
55 56 3.733443 ATGAGCAACTTTGGGTGAAAC 57.267 42.857 0.00 0.00 0.00 2.78
56 57 5.860941 TTTATGAGCAACTTTGGGTGAAA 57.139 34.783 0.00 0.00 0.00 2.69
57 58 5.860941 TTTTATGAGCAACTTTGGGTGAA 57.139 34.783 0.00 0.00 0.00 3.18
58 59 5.860941 TTTTTATGAGCAACTTTGGGTGA 57.139 34.783 0.00 0.00 0.00 4.02
81 82 9.396022 CCCATATGAGTATGTTTTGACTAACTT 57.604 33.333 3.65 0.00 36.72 2.66
82 83 8.768397 TCCCATATGAGTATGTTTTGACTAACT 58.232 33.333 3.65 0.00 36.72 2.24
83 84 8.958119 TCCCATATGAGTATGTTTTGACTAAC 57.042 34.615 3.65 0.00 36.72 2.34
84 85 9.778741 GATCCCATATGAGTATGTTTTGACTAA 57.221 33.333 3.65 0.00 36.72 2.24
85 86 9.159254 AGATCCCATATGAGTATGTTTTGACTA 57.841 33.333 3.65 0.00 36.72 2.59
86 87 8.038862 AGATCCCATATGAGTATGTTTTGACT 57.961 34.615 3.65 0.00 36.72 3.41
87 88 9.429359 CTAGATCCCATATGAGTATGTTTTGAC 57.571 37.037 3.65 0.00 36.72 3.18
88 89 9.159254 ACTAGATCCCATATGAGTATGTTTTGA 57.841 33.333 3.65 0.00 36.72 2.69
89 90 9.784531 AACTAGATCCCATATGAGTATGTTTTG 57.215 33.333 3.65 0.00 36.72 2.44
92 93 9.784531 CAAAACTAGATCCCATATGAGTATGTT 57.215 33.333 3.65 0.00 36.72 2.71
93 94 9.159254 TCAAAACTAGATCCCATATGAGTATGT 57.841 33.333 3.65 0.00 36.72 2.29
96 97 9.434275 TCTTCAAAACTAGATCCCATATGAGTA 57.566 33.333 3.65 0.00 0.00 2.59
97 98 8.324191 TCTTCAAAACTAGATCCCATATGAGT 57.676 34.615 3.65 0.00 0.00 3.41
98 99 7.387397 GCTCTTCAAAACTAGATCCCATATGAG 59.613 40.741 3.65 0.00 0.00 2.90
99 100 7.071698 AGCTCTTCAAAACTAGATCCCATATGA 59.928 37.037 3.65 0.00 0.00 2.15
100 101 7.222872 AGCTCTTCAAAACTAGATCCCATATG 58.777 38.462 0.00 0.00 0.00 1.78
101 102 7.385894 AGCTCTTCAAAACTAGATCCCATAT 57.614 36.000 0.00 0.00 0.00 1.78
102 103 6.461648 CGAGCTCTTCAAAACTAGATCCCATA 60.462 42.308 12.85 0.00 0.00 2.74
103 104 5.679601 GAGCTCTTCAAAACTAGATCCCAT 58.320 41.667 6.43 0.00 0.00 4.00
104 105 4.382040 CGAGCTCTTCAAAACTAGATCCCA 60.382 45.833 12.85 0.00 0.00 4.37
105 106 4.116238 CGAGCTCTTCAAAACTAGATCCC 58.884 47.826 12.85 0.00 0.00 3.85
106 107 4.749976 ACGAGCTCTTCAAAACTAGATCC 58.250 43.478 12.85 0.00 0.00 3.36
107 108 4.497608 CGACGAGCTCTTCAAAACTAGATC 59.502 45.833 19.13 0.00 0.00 2.75
108 109 4.416620 CGACGAGCTCTTCAAAACTAGAT 58.583 43.478 19.13 0.00 0.00 1.98
109 110 3.822996 CGACGAGCTCTTCAAAACTAGA 58.177 45.455 19.13 0.00 0.00 2.43
110 111 2.342948 GCGACGAGCTCTTCAAAACTAG 59.657 50.000 19.13 3.31 44.04 2.57
111 112 2.325761 GCGACGAGCTCTTCAAAACTA 58.674 47.619 19.13 0.00 44.04 2.24
112 113 1.140816 GCGACGAGCTCTTCAAAACT 58.859 50.000 19.13 0.00 44.04 2.66
113 114 0.179272 CGCGACGAGCTCTTCAAAAC 60.179 55.000 19.13 5.48 45.59 2.43
114 115 0.596600 ACGCGACGAGCTCTTCAAAA 60.597 50.000 15.93 0.00 45.59 2.44
115 116 1.007734 ACGCGACGAGCTCTTCAAA 60.008 52.632 15.93 0.00 45.59 2.69
116 117 1.729484 CACGCGACGAGCTCTTCAA 60.729 57.895 15.93 0.00 45.59 2.69
117 118 2.126850 CACGCGACGAGCTCTTCA 60.127 61.111 15.93 0.00 45.59 3.02
118 119 2.797866 TTCCACGCGACGAGCTCTTC 62.798 60.000 15.93 11.39 45.59 2.87
119 120 2.916052 TTCCACGCGACGAGCTCTT 61.916 57.895 15.93 1.07 45.59 2.85
120 121 3.362797 TTCCACGCGACGAGCTCT 61.363 61.111 15.93 0.00 45.59 4.09
121 122 3.173240 GTTCCACGCGACGAGCTC 61.173 66.667 15.93 2.73 45.59 4.09
122 123 4.719369 GGTTCCACGCGACGAGCT 62.719 66.667 15.93 0.00 45.59 4.09
124 125 4.351938 TGGGTTCCACGCGACGAG 62.352 66.667 15.93 0.00 33.25 4.18
125 126 4.351938 CTGGGTTCCACGCGACGA 62.352 66.667 15.93 4.06 33.25 4.20
131 132 3.818121 TTCACGGCTGGGTTCCACG 62.818 63.158 0.00 0.00 0.00 4.94
132 133 1.104577 TTTTCACGGCTGGGTTCCAC 61.105 55.000 0.00 0.00 0.00 4.02
133 134 1.104577 GTTTTCACGGCTGGGTTCCA 61.105 55.000 0.00 0.00 0.00 3.53
134 135 1.104577 TGTTTTCACGGCTGGGTTCC 61.105 55.000 0.00 0.00 0.00 3.62
135 136 0.741915 TTGTTTTCACGGCTGGGTTC 59.258 50.000 0.00 0.00 0.00 3.62
136 137 1.187087 TTTGTTTTCACGGCTGGGTT 58.813 45.000 0.00 0.00 0.00 4.11
137 138 1.408969 ATTTGTTTTCACGGCTGGGT 58.591 45.000 0.00 0.00 0.00 4.51
138 139 2.524569 AATTTGTTTTCACGGCTGGG 57.475 45.000 0.00 0.00 0.00 4.45
139 140 3.452474 TCAAATTTGTTTTCACGGCTGG 58.548 40.909 17.47 0.00 0.00 4.85
140 141 4.111916 ACTCAAATTTGTTTTCACGGCTG 58.888 39.130 17.47 0.00 0.00 4.85
141 142 4.385358 ACTCAAATTTGTTTTCACGGCT 57.615 36.364 17.47 0.00 0.00 5.52
142 143 5.463499 AAACTCAAATTTGTTTTCACGGC 57.537 34.783 17.47 0.00 33.21 5.68
143 144 7.054855 TCAAAACTCAAATTTGTTTTCACGG 57.945 32.000 17.47 6.83 42.29 4.94
144 145 8.379161 TCATCAAAACTCAAATTTGTTTTCACG 58.621 29.630 17.47 7.12 42.29 4.35
147 148 9.571804 CGATCATCAAAACTCAAATTTGTTTTC 57.428 29.630 17.47 5.13 42.29 2.29
148 149 8.550376 CCGATCATCAAAACTCAAATTTGTTTT 58.450 29.630 17.47 14.16 44.18 2.43
149 150 7.710475 ACCGATCATCAAAACTCAAATTTGTTT 59.290 29.630 17.47 9.17 38.57 2.83
150 151 7.209475 ACCGATCATCAAAACTCAAATTTGTT 58.791 30.769 17.47 3.26 38.57 2.83
151 152 6.748132 ACCGATCATCAAAACTCAAATTTGT 58.252 32.000 17.47 0.00 38.57 2.83
152 153 7.381948 TGAACCGATCATCAAAACTCAAATTTG 59.618 33.333 12.15 12.15 34.82 2.32
153 154 7.432869 TGAACCGATCATCAAAACTCAAATTT 58.567 30.769 0.00 0.00 31.50 1.82
154 155 6.980593 TGAACCGATCATCAAAACTCAAATT 58.019 32.000 0.00 0.00 31.50 1.82
155 156 6.573664 TGAACCGATCATCAAAACTCAAAT 57.426 33.333 0.00 0.00 31.50 2.32
156 157 6.384258 TTGAACCGATCATCAAAACTCAAA 57.616 33.333 3.78 0.00 38.03 2.69
157 158 6.384258 TTTGAACCGATCATCAAAACTCAA 57.616 33.333 13.09 0.08 41.26 3.02
158 159 6.039270 ACTTTTGAACCGATCATCAAAACTCA 59.961 34.615 19.24 7.03 45.55 3.41
159 160 6.438763 ACTTTTGAACCGATCATCAAAACTC 58.561 36.000 19.24 0.00 45.55 3.01
160 161 6.391227 ACTTTTGAACCGATCATCAAAACT 57.609 33.333 19.24 12.19 45.55 2.66
161 162 8.742554 ATAACTTTTGAACCGATCATCAAAAC 57.257 30.769 19.24 0.00 45.55 2.43
163 164 8.181573 GCTATAACTTTTGAACCGATCATCAAA 58.818 33.333 11.98 11.98 42.17 2.69
164 165 7.552687 AGCTATAACTTTTGAACCGATCATCAA 59.447 33.333 0.00 0.00 38.03 2.57
165 166 7.047891 AGCTATAACTTTTGAACCGATCATCA 58.952 34.615 0.00 0.00 38.03 3.07
166 167 7.484035 AGCTATAACTTTTGAACCGATCATC 57.516 36.000 0.00 0.00 38.03 2.92
167 168 7.865706 AAGCTATAACTTTTGAACCGATCAT 57.134 32.000 0.00 0.00 38.03 2.45
168 169 7.681939 AAAGCTATAACTTTTGAACCGATCA 57.318 32.000 0.00 0.00 36.47 2.92
169 170 8.850452 CAAAAAGCTATAACTTTTGAACCGATC 58.150 33.333 13.25 0.00 46.49 3.69
170 171 8.573035 TCAAAAAGCTATAACTTTTGAACCGAT 58.427 29.630 16.96 0.00 46.49 4.18
171 172 7.932335 TCAAAAAGCTATAACTTTTGAACCGA 58.068 30.769 16.96 4.83 46.49 4.69
172 173 8.568732 TTCAAAAAGCTATAACTTTTGAACCG 57.431 30.769 22.88 1.88 46.49 4.44
184 185 9.856803 GCGTTTTCAAAATTTCAAAAAGCTATA 57.143 25.926 23.79 2.28 39.73 1.31
185 186 8.394121 TGCGTTTTCAAAATTTCAAAAAGCTAT 58.606 25.926 27.19 0.00 41.88 2.97
186 187 7.743104 TGCGTTTTCAAAATTTCAAAAAGCTA 58.257 26.923 27.19 18.80 41.88 3.32
187 188 6.606768 TGCGTTTTCAAAATTTCAAAAAGCT 58.393 28.000 27.19 0.00 41.88 3.74
188 189 6.845272 TGCGTTTTCAAAATTTCAAAAAGC 57.155 29.167 24.05 24.05 41.78 3.51
189 190 8.900762 AGTTTGCGTTTTCAAAATTTCAAAAAG 58.099 25.926 12.78 12.78 37.65 2.27
190 191 8.788409 AGTTTGCGTTTTCAAAATTTCAAAAA 57.212 23.077 8.75 7.66 37.65 1.94
191 192 9.878599 TTAGTTTGCGTTTTCAAAATTTCAAAA 57.121 22.222 8.01 0.00 37.65 2.44
192 193 9.878599 TTTAGTTTGCGTTTTCAAAATTTCAAA 57.121 22.222 0.00 0.00 37.65 2.69
194 195 9.483062 CATTTAGTTTGCGTTTTCAAAATTTCA 57.517 25.926 0.00 0.00 37.65 2.69
195 196 8.460629 GCATTTAGTTTGCGTTTTCAAAATTTC 58.539 29.630 0.00 0.00 37.65 2.17
196 197 7.965107 TGCATTTAGTTTGCGTTTTCAAAATTT 59.035 25.926 0.00 0.00 43.10 1.82
197 198 7.467623 TGCATTTAGTTTGCGTTTTCAAAATT 58.532 26.923 0.00 0.00 43.10 1.82
198 199 7.009568 TGCATTTAGTTTGCGTTTTCAAAAT 57.990 28.000 0.00 0.00 43.10 1.82
199 200 6.408858 TGCATTTAGTTTGCGTTTTCAAAA 57.591 29.167 0.00 0.00 43.10 2.44
200 201 6.417327 CATGCATTTAGTTTGCGTTTTCAAA 58.583 32.000 0.00 0.00 43.10 2.69
201 202 5.557893 GCATGCATTTAGTTTGCGTTTTCAA 60.558 36.000 14.21 0.00 43.10 2.69
202 203 4.084641 GCATGCATTTAGTTTGCGTTTTCA 60.085 37.500 14.21 0.00 43.10 2.69
203 204 4.084641 TGCATGCATTTAGTTTGCGTTTTC 60.085 37.500 18.46 0.00 43.10 2.29
204 205 3.806521 TGCATGCATTTAGTTTGCGTTTT 59.193 34.783 18.46 0.00 43.10 2.43
205 206 3.388308 TGCATGCATTTAGTTTGCGTTT 58.612 36.364 18.46 0.00 43.10 3.60
206 207 3.023946 TGCATGCATTTAGTTTGCGTT 57.976 38.095 18.46 0.00 43.10 4.84
207 208 2.721274 TGCATGCATTTAGTTTGCGT 57.279 40.000 18.46 0.00 43.10 5.24
208 209 2.222332 CGTTGCATGCATTTAGTTTGCG 60.222 45.455 23.37 10.70 43.10 4.85
209 210 2.730928 ACGTTGCATGCATTTAGTTTGC 59.269 40.909 23.37 0.00 40.55 3.68
210 211 3.121611 CCACGTTGCATGCATTTAGTTTG 59.878 43.478 23.37 11.39 0.00 2.93
211 212 3.316283 CCACGTTGCATGCATTTAGTTT 58.684 40.909 23.37 0.00 0.00 2.66
212 213 2.352617 CCCACGTTGCATGCATTTAGTT 60.353 45.455 23.37 0.00 0.00 2.24
213 214 1.202114 CCCACGTTGCATGCATTTAGT 59.798 47.619 23.37 15.66 0.00 2.24
214 215 1.472082 TCCCACGTTGCATGCATTTAG 59.528 47.619 23.37 15.02 0.00 1.85
215 216 1.539157 TCCCACGTTGCATGCATTTA 58.461 45.000 23.37 3.27 0.00 1.40
216 217 0.896923 ATCCCACGTTGCATGCATTT 59.103 45.000 23.37 5.75 0.00 2.32
217 218 0.457035 GATCCCACGTTGCATGCATT 59.543 50.000 23.37 6.15 0.00 3.56
218 219 0.394762 AGATCCCACGTTGCATGCAT 60.395 50.000 23.37 3.27 0.00 3.96
219 220 0.608856 AAGATCCCACGTTGCATGCA 60.609 50.000 18.46 18.46 0.00 3.96
220 221 0.179156 CAAGATCCCACGTTGCATGC 60.179 55.000 11.82 11.82 0.00 4.06
221 222 1.167851 ACAAGATCCCACGTTGCATG 58.832 50.000 0.00 0.00 0.00 4.06
222 223 1.541147 CAACAAGATCCCACGTTGCAT 59.459 47.619 0.00 0.00 33.08 3.96
223 224 0.950836 CAACAAGATCCCACGTTGCA 59.049 50.000 0.00 0.00 33.08 4.08
224 225 0.240945 CCAACAAGATCCCACGTTGC 59.759 55.000 8.05 0.00 37.90 4.17
225 226 0.881118 CCCAACAAGATCCCACGTTG 59.119 55.000 0.00 7.01 38.73 4.10
226 227 0.768622 TCCCAACAAGATCCCACGTT 59.231 50.000 0.00 0.00 0.00 3.99
227 228 0.768622 TTCCCAACAAGATCCCACGT 59.231 50.000 0.00 0.00 0.00 4.49
228 229 1.904287 TTTCCCAACAAGATCCCACG 58.096 50.000 0.00 0.00 0.00 4.94
229 230 3.193479 GTGATTTCCCAACAAGATCCCAC 59.807 47.826 0.00 0.00 0.00 4.61
230 231 3.430453 GTGATTTCCCAACAAGATCCCA 58.570 45.455 0.00 0.00 0.00 4.37
231 232 2.423538 CGTGATTTCCCAACAAGATCCC 59.576 50.000 0.00 0.00 0.00 3.85
232 233 3.127030 GTCGTGATTTCCCAACAAGATCC 59.873 47.826 0.00 0.00 0.00 3.36
233 234 3.751175 TGTCGTGATTTCCCAACAAGATC 59.249 43.478 0.00 0.00 0.00 2.75
234 235 3.750371 TGTCGTGATTTCCCAACAAGAT 58.250 40.909 0.00 0.00 0.00 2.40
235 236 3.201353 TGTCGTGATTTCCCAACAAGA 57.799 42.857 0.00 0.00 0.00 3.02
236 237 3.366273 CCATGTCGTGATTTCCCAACAAG 60.366 47.826 0.00 0.00 0.00 3.16
237 238 2.556189 CCATGTCGTGATTTCCCAACAA 59.444 45.455 0.00 0.00 0.00 2.83
238 239 2.158559 CCATGTCGTGATTTCCCAACA 58.841 47.619 0.00 0.00 0.00 3.33
239 240 2.432444 TCCATGTCGTGATTTCCCAAC 58.568 47.619 0.00 0.00 0.00 3.77
240 241 2.869101 TCCATGTCGTGATTTCCCAA 57.131 45.000 0.00 0.00 0.00 4.12
241 242 2.642427 CATCCATGTCGTGATTTCCCA 58.358 47.619 0.00 0.00 0.00 4.37
242 243 1.949525 CCATCCATGTCGTGATTTCCC 59.050 52.381 0.00 0.00 0.00 3.97
243 244 2.614057 GTCCATCCATGTCGTGATTTCC 59.386 50.000 0.00 0.00 0.00 3.13
244 245 2.285220 CGTCCATCCATGTCGTGATTTC 59.715 50.000 0.00 0.00 0.00 2.17
245 246 2.279741 CGTCCATCCATGTCGTGATTT 58.720 47.619 0.00 0.00 0.00 2.17
246 247 1.939974 CGTCCATCCATGTCGTGATT 58.060 50.000 0.00 0.00 0.00 2.57
247 248 0.530650 GCGTCCATCCATGTCGTGAT 60.531 55.000 0.00 0.00 0.00 3.06
248 249 1.153647 GCGTCCATCCATGTCGTGA 60.154 57.895 0.00 0.00 0.00 4.35
249 250 1.447663 TGCGTCCATCCATGTCGTG 60.448 57.895 0.00 0.00 0.00 4.35
250 251 1.447838 GTGCGTCCATCCATGTCGT 60.448 57.895 0.00 0.00 0.00 4.34
251 252 1.153568 AGTGCGTCCATCCATGTCG 60.154 57.895 0.00 0.00 0.00 4.35
252 253 0.108186 TCAGTGCGTCCATCCATGTC 60.108 55.000 0.00 0.00 0.00 3.06
253 254 0.107993 CTCAGTGCGTCCATCCATGT 60.108 55.000 0.00 0.00 0.00 3.21
254 255 0.176449 TCTCAGTGCGTCCATCCATG 59.824 55.000 0.00 0.00 0.00 3.66
255 256 0.176680 GTCTCAGTGCGTCCATCCAT 59.823 55.000 0.00 0.00 0.00 3.41
256 257 1.184970 TGTCTCAGTGCGTCCATCCA 61.185 55.000 0.00 0.00 0.00 3.41
257 258 0.737715 GTGTCTCAGTGCGTCCATCC 60.738 60.000 0.00 0.00 0.00 3.51
258 259 1.073216 CGTGTCTCAGTGCGTCCATC 61.073 60.000 0.00 0.00 0.00 3.51
259 260 1.080501 CGTGTCTCAGTGCGTCCAT 60.081 57.895 0.00 0.00 0.00 3.41
260 261 2.335011 CGTGTCTCAGTGCGTCCA 59.665 61.111 0.00 0.00 0.00 4.02
261 262 2.430921 CCGTGTCTCAGTGCGTCC 60.431 66.667 0.00 0.00 0.00 4.79
262 263 2.016704 CACCGTGTCTCAGTGCGTC 61.017 63.158 0.00 0.00 0.00 5.19
263 264 2.027605 CACCGTGTCTCAGTGCGT 59.972 61.111 0.00 0.00 0.00 5.24
264 265 2.734723 CCACCGTGTCTCAGTGCG 60.735 66.667 0.00 0.00 0.00 5.34
265 266 1.664965 GTCCACCGTGTCTCAGTGC 60.665 63.158 0.00 0.00 0.00 4.40
266 267 1.006102 GGTCCACCGTGTCTCAGTG 60.006 63.158 0.00 0.00 0.00 3.66
267 268 1.456892 TGGTCCACCGTGTCTCAGT 60.457 57.895 0.00 0.00 39.43 3.41
268 269 1.290324 CTGGTCCACCGTGTCTCAG 59.710 63.158 0.00 0.00 39.43 3.35
269 270 2.867855 GCTGGTCCACCGTGTCTCA 61.868 63.158 0.00 0.00 39.43 3.27
270 271 2.048127 GCTGGTCCACCGTGTCTC 60.048 66.667 0.00 0.00 39.43 3.36
271 272 2.524394 AGCTGGTCCACCGTGTCT 60.524 61.111 0.00 0.00 39.43 3.41
272 273 2.048127 GAGCTGGTCCACCGTGTC 60.048 66.667 0.00 0.00 39.43 3.67
273 274 3.626924 GGAGCTGGTCCACCGTGT 61.627 66.667 20.44 0.00 46.10 4.49
281 282 1.268079 GCACAGAAAAAGGAGCTGGTC 59.732 52.381 0.00 0.00 34.05 4.02
282 283 1.322442 GCACAGAAAAAGGAGCTGGT 58.678 50.000 0.00 0.00 34.05 4.00
283 284 0.239347 CGCACAGAAAAAGGAGCTGG 59.761 55.000 0.00 0.00 34.05 4.85
284 285 0.947244 ACGCACAGAAAAAGGAGCTG 59.053 50.000 0.00 0.00 35.81 4.24
285 286 1.680338 AACGCACAGAAAAAGGAGCT 58.320 45.000 0.00 0.00 0.00 4.09
286 287 3.619233 TTAACGCACAGAAAAAGGAGC 57.381 42.857 0.00 0.00 0.00 4.70
287 288 5.048713 AGGAATTAACGCACAGAAAAAGGAG 60.049 40.000 0.00 0.00 0.00 3.69
288 289 4.825085 AGGAATTAACGCACAGAAAAAGGA 59.175 37.500 0.00 0.00 0.00 3.36
289 290 5.121221 AGGAATTAACGCACAGAAAAAGG 57.879 39.130 0.00 0.00 0.00 3.11
290 291 6.143919 GGAAAGGAATTAACGCACAGAAAAAG 59.856 38.462 0.00 0.00 0.00 2.27
291 292 5.980715 GGAAAGGAATTAACGCACAGAAAAA 59.019 36.000 0.00 0.00 0.00 1.94
292 293 5.525199 GGAAAGGAATTAACGCACAGAAAA 58.475 37.500 0.00 0.00 0.00 2.29
293 294 4.319911 CGGAAAGGAATTAACGCACAGAAA 60.320 41.667 0.00 0.00 0.00 2.52
294 295 3.187637 CGGAAAGGAATTAACGCACAGAA 59.812 43.478 0.00 0.00 0.00 3.02
295 296 2.739913 CGGAAAGGAATTAACGCACAGA 59.260 45.455 0.00 0.00 0.00 3.41
296 297 2.482721 ACGGAAAGGAATTAACGCACAG 59.517 45.455 0.00 0.00 0.00 3.66
297 298 2.224549 CACGGAAAGGAATTAACGCACA 59.775 45.455 0.00 0.00 0.00 4.57
298 299 2.413634 CCACGGAAAGGAATTAACGCAC 60.414 50.000 0.00 0.00 0.00 5.34
299 300 1.807742 CCACGGAAAGGAATTAACGCA 59.192 47.619 0.00 0.00 0.00 5.24
300 301 1.466866 GCCACGGAAAGGAATTAACGC 60.467 52.381 0.00 0.00 0.00 4.84
301 302 1.131693 GGCCACGGAAAGGAATTAACG 59.868 52.381 0.00 0.00 0.00 3.18
302 303 2.163613 CAGGCCACGGAAAGGAATTAAC 59.836 50.000 5.01 0.00 0.00 2.01
303 304 2.224917 ACAGGCCACGGAAAGGAATTAA 60.225 45.455 5.01 0.00 0.00 1.40
304 305 1.353022 ACAGGCCACGGAAAGGAATTA 59.647 47.619 5.01 0.00 0.00 1.40
305 306 0.112412 ACAGGCCACGGAAAGGAATT 59.888 50.000 5.01 0.00 0.00 2.17
306 307 0.609131 CACAGGCCACGGAAAGGAAT 60.609 55.000 5.01 0.00 0.00 3.01
307 308 1.228124 CACAGGCCACGGAAAGGAA 60.228 57.895 5.01 0.00 0.00 3.36
308 309 1.122632 TACACAGGCCACGGAAAGGA 61.123 55.000 5.01 0.00 0.00 3.36
309 310 0.035439 ATACACAGGCCACGGAAAGG 60.035 55.000 5.01 0.00 0.00 3.11
310 311 1.468520 CAATACACAGGCCACGGAAAG 59.531 52.381 5.01 0.00 0.00 2.62
311 312 1.529226 CAATACACAGGCCACGGAAA 58.471 50.000 5.01 0.00 0.00 3.13
312 313 0.322098 CCAATACACAGGCCACGGAA 60.322 55.000 5.01 0.00 0.00 4.30
313 314 1.195442 TCCAATACACAGGCCACGGA 61.195 55.000 5.01 0.00 0.00 4.69
314 315 0.322098 TTCCAATACACAGGCCACGG 60.322 55.000 5.01 0.00 0.00 4.94
315 316 0.802494 GTTCCAATACACAGGCCACG 59.198 55.000 5.01 0.00 0.00 4.94
316 317 1.173913 GGTTCCAATACACAGGCCAC 58.826 55.000 5.01 0.00 0.00 5.01
317 318 0.774276 TGGTTCCAATACACAGGCCA 59.226 50.000 5.01 0.00 0.00 5.36
318 319 1.173913 GTGGTTCCAATACACAGGCC 58.826 55.000 0.00 0.00 35.30 5.19
319 320 0.802494 CGTGGTTCCAATACACAGGC 59.198 55.000 0.00 0.00 34.91 4.85
320 321 1.804151 CACGTGGTTCCAATACACAGG 59.196 52.381 7.95 0.00 34.91 4.00
321 322 1.196808 GCACGTGGTTCCAATACACAG 59.803 52.381 18.88 0.00 34.91 3.66
322 323 1.231221 GCACGTGGTTCCAATACACA 58.769 50.000 18.88 0.00 34.91 3.72
323 324 0.165079 CGCACGTGGTTCCAATACAC 59.835 55.000 18.88 0.00 0.00 2.90
324 325 0.033642 TCGCACGTGGTTCCAATACA 59.966 50.000 18.88 0.00 0.00 2.29
325 326 0.719465 CTCGCACGTGGTTCCAATAC 59.281 55.000 18.88 0.00 0.00 1.89
326 327 0.604073 TCTCGCACGTGGTTCCAATA 59.396 50.000 18.88 0.00 0.00 1.90
327 328 0.250124 TTCTCGCACGTGGTTCCAAT 60.250 50.000 18.88 0.00 0.00 3.16
328 329 0.462225 TTTCTCGCACGTGGTTCCAA 60.462 50.000 18.88 0.00 0.00 3.53
329 330 0.878523 CTTTCTCGCACGTGGTTCCA 60.879 55.000 18.88 0.00 0.00 3.53
330 331 0.599204 TCTTTCTCGCACGTGGTTCC 60.599 55.000 18.88 0.00 0.00 3.62
331 332 0.784778 CTCTTTCTCGCACGTGGTTC 59.215 55.000 18.88 0.00 0.00 3.62
332 333 0.600255 CCTCTTTCTCGCACGTGGTT 60.600 55.000 18.88 0.00 0.00 3.67
333 334 1.006102 CCTCTTTCTCGCACGTGGT 60.006 57.895 18.88 0.00 0.00 4.16
334 335 2.383527 GCCTCTTTCTCGCACGTGG 61.384 63.158 18.88 7.71 0.00 4.94
335 336 2.720758 CGCCTCTTTCTCGCACGTG 61.721 63.158 12.28 12.28 0.00 4.49
336 337 2.430921 CGCCTCTTTCTCGCACGT 60.431 61.111 0.00 0.00 0.00 4.49
337 338 3.181967 CCGCCTCTTTCTCGCACG 61.182 66.667 0.00 0.00 0.00 5.34
338 339 2.815647 CCCGCCTCTTTCTCGCAC 60.816 66.667 0.00 0.00 0.00 5.34
339 340 2.994995 TCCCGCCTCTTTCTCGCA 60.995 61.111 0.00 0.00 0.00 5.10
340 341 2.202810 CTCCCGCCTCTTTCTCGC 60.203 66.667 0.00 0.00 0.00 5.03
341 342 1.139947 GTCTCCCGCCTCTTTCTCG 59.860 63.158 0.00 0.00 0.00 4.04
342 343 0.174617 CTGTCTCCCGCCTCTTTCTC 59.825 60.000 0.00 0.00 0.00 2.87
343 344 1.261238 CCTGTCTCCCGCCTCTTTCT 61.261 60.000 0.00 0.00 0.00 2.52
344 345 1.219393 CCTGTCTCCCGCCTCTTTC 59.781 63.158 0.00 0.00 0.00 2.62
345 346 1.229209 TCCTGTCTCCCGCCTCTTT 60.229 57.895 0.00 0.00 0.00 2.52
346 347 1.684049 CTCCTGTCTCCCGCCTCTT 60.684 63.158 0.00 0.00 0.00 2.85
347 348 2.043450 CTCCTGTCTCCCGCCTCT 60.043 66.667 0.00 0.00 0.00 3.69
348 349 3.844090 GCTCCTGTCTCCCGCCTC 61.844 72.222 0.00 0.00 0.00 4.70
349 350 2.589610 TATGCTCCTGTCTCCCGCCT 62.590 60.000 0.00 0.00 0.00 5.52
350 351 2.093537 CTATGCTCCTGTCTCCCGCC 62.094 65.000 0.00 0.00 0.00 6.13
351 352 1.109920 TCTATGCTCCTGTCTCCCGC 61.110 60.000 0.00 0.00 0.00 6.13
352 353 1.403814 TTCTATGCTCCTGTCTCCCG 58.596 55.000 0.00 0.00 0.00 5.14
353 354 4.102367 AGAAATTCTATGCTCCTGTCTCCC 59.898 45.833 0.00 0.00 0.00 4.30
354 355 5.289083 AGAAATTCTATGCTCCTGTCTCC 57.711 43.478 0.00 0.00 0.00 3.71
355 356 6.112058 ACAAGAAATTCTATGCTCCTGTCTC 58.888 40.000 0.00 0.00 0.00 3.36
356 357 6.059787 ACAAGAAATTCTATGCTCCTGTCT 57.940 37.500 0.00 0.00 0.00 3.41
357 358 5.006165 CGACAAGAAATTCTATGCTCCTGTC 59.994 44.000 10.18 10.18 0.00 3.51
358 359 4.872691 CGACAAGAAATTCTATGCTCCTGT 59.127 41.667 0.00 0.00 0.00 4.00
359 360 4.872691 ACGACAAGAAATTCTATGCTCCTG 59.127 41.667 0.00 0.00 0.00 3.86
360 361 4.872691 CACGACAAGAAATTCTATGCTCCT 59.127 41.667 0.00 0.00 0.00 3.69
361 362 4.631813 ACACGACAAGAAATTCTATGCTCC 59.368 41.667 0.00 0.00 0.00 4.70
362 363 5.786401 ACACGACAAGAAATTCTATGCTC 57.214 39.130 0.00 0.00 0.00 4.26
363 364 5.292101 GCTACACGACAAGAAATTCTATGCT 59.708 40.000 0.00 0.00 0.00 3.79
364 365 5.493735 GCTACACGACAAGAAATTCTATGC 58.506 41.667 0.00 0.00 0.00 3.14
365 366 5.276395 CGGCTACACGACAAGAAATTCTATG 60.276 44.000 0.00 0.15 35.47 2.23
366 367 4.804139 CGGCTACACGACAAGAAATTCTAT 59.196 41.667 0.00 0.00 35.47 1.98
367 368 4.171005 CGGCTACACGACAAGAAATTCTA 58.829 43.478 0.00 0.00 35.47 2.10
368 369 2.993899 CGGCTACACGACAAGAAATTCT 59.006 45.455 0.00 0.00 35.47 2.40
369 370 2.474032 GCGGCTACACGACAAGAAATTC 60.474 50.000 0.00 0.00 35.47 2.17
370 371 1.463444 GCGGCTACACGACAAGAAATT 59.537 47.619 0.00 0.00 35.47 1.82
371 372 1.076332 GCGGCTACACGACAAGAAAT 58.924 50.000 0.00 0.00 35.47 2.17
372 373 0.947180 GGCGGCTACACGACAAGAAA 60.947 55.000 0.00 0.00 42.70 2.52
373 374 1.373748 GGCGGCTACACGACAAGAA 60.374 57.895 0.00 0.00 42.70 2.52
374 375 2.260434 GGCGGCTACACGACAAGA 59.740 61.111 0.00 0.00 42.70 3.02
375 376 2.813908 GGGCGGCTACACGACAAG 60.814 66.667 9.56 0.00 45.67 3.16
376 377 4.728102 CGGGCGGCTACACGACAA 62.728 66.667 9.56 0.00 45.67 3.18
390 391 2.885644 CTCGTTCGTCATGGCGGG 60.886 66.667 21.18 9.84 0.00 6.13
391 392 3.554692 GCTCGTTCGTCATGGCGG 61.555 66.667 21.18 3.72 0.00 6.13
392 393 3.902063 CGCTCGTTCGTCATGGCG 61.902 66.667 14.91 14.91 36.89 5.69
393 394 4.210304 GCGCTCGTTCGTCATGGC 62.210 66.667 0.00 0.00 0.00 4.40
394 395 2.792290 CTGCGCTCGTTCGTCATGG 61.792 63.158 9.73 0.00 0.00 3.66
395 396 2.691522 CTGCGCTCGTTCGTCATG 59.308 61.111 9.73 0.00 0.00 3.07
396 397 3.181967 GCTGCGCTCGTTCGTCAT 61.182 61.111 9.73 0.00 0.00 3.06
397 398 4.342987 AGCTGCGCTCGTTCGTCA 62.343 61.111 9.73 0.00 30.62 4.35
398 399 3.832171 CAGCTGCGCTCGTTCGTC 61.832 66.667 9.73 0.00 36.40 4.20
413 414 2.159627 ACCTGAAATCTTAAACGCGCAG 59.840 45.455 5.73 2.42 0.00 5.18
414 415 2.147958 ACCTGAAATCTTAAACGCGCA 58.852 42.857 5.73 0.00 0.00 6.09
415 416 2.894307 ACCTGAAATCTTAAACGCGC 57.106 45.000 5.73 0.00 0.00 6.86
416 417 7.018826 TGAAATAACCTGAAATCTTAAACGCG 58.981 34.615 3.53 3.53 0.00 6.01
417 418 8.911247 ATGAAATAACCTGAAATCTTAAACGC 57.089 30.769 0.00 0.00 0.00 4.84
448 449 9.751542 TTCTTCGAAAATAACATTGGCTAAAAA 57.248 25.926 0.00 0.00 0.00 1.94
449 450 9.751542 TTTCTTCGAAAATAACATTGGCTAAAA 57.248 25.926 0.00 0.00 0.00 1.52
450 451 9.187455 GTTTCTTCGAAAATAACATTGGCTAAA 57.813 29.630 0.00 0.00 0.00 1.85
451 452 7.810759 GGTTTCTTCGAAAATAACATTGGCTAA 59.189 33.333 14.69 0.00 0.00 3.09
452 453 7.175990 AGGTTTCTTCGAAAATAACATTGGCTA 59.824 33.333 14.69 0.00 0.00 3.93
453 454 6.015434 AGGTTTCTTCGAAAATAACATTGGCT 60.015 34.615 14.69 4.13 0.00 4.75
454 455 6.156519 AGGTTTCTTCGAAAATAACATTGGC 58.843 36.000 14.69 0.00 0.00 4.52
455 456 8.587952 AAAGGTTTCTTCGAAAATAACATTGG 57.412 30.769 13.62 0.00 31.82 3.16
479 480 5.171147 TGTAGCCGAACAAAATCGAAAAA 57.829 34.783 0.00 0.00 45.48 1.94
566 567 1.678101 GTCCATGGGCTTTGTATGAGC 59.322 52.381 9.76 0.00 39.41 4.26
585 586 3.349006 CACTTGCGAGCGCTTGGT 61.349 61.111 25.74 12.63 42.51 3.67
601 602 0.465460 GAGGTTGCGATATTGGCCCA 60.465 55.000 0.00 0.00 0.00 5.36
771 779 4.499116 CGAGGGATGGGGAGGGGT 62.499 72.222 0.00 0.00 0.00 4.95
781 791 2.367202 ATGAACGGTGGCGAGGGAT 61.367 57.895 0.00 0.00 0.00 3.85
783 793 2.819595 CATGAACGGTGGCGAGGG 60.820 66.667 0.00 0.00 0.00 4.30
788 798 2.047655 TCGGACATGAACGGTGGC 60.048 61.111 0.00 0.00 0.00 5.01
911 928 1.517257 CTAGCGAGCAACACGGGAG 60.517 63.158 0.00 0.00 0.00 4.30
912 929 2.571757 CTAGCGAGCAACACGGGA 59.428 61.111 0.00 0.00 0.00 5.14
939 956 5.533154 ACGAACAAATCCACCAATCAAACTA 59.467 36.000 0.00 0.00 0.00 2.24
940 957 4.340950 ACGAACAAATCCACCAATCAAACT 59.659 37.500 0.00 0.00 0.00 2.66
942 959 4.615949 CACGAACAAATCCACCAATCAAA 58.384 39.130 0.00 0.00 0.00 2.69
978 998 2.710826 GCCCTCCTCTCCTCCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
979 999 2.123033 GCCCTCCTCTCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
980 1000 2.520741 CGCCCTCCTCTCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
1203 1250 5.407502 TCACCATAATCATAAGCGATACCG 58.592 41.667 0.00 0.00 39.16 4.02
1240 1287 1.379044 CCCCAGCCACACATCCTTC 60.379 63.158 0.00 0.00 0.00 3.46
1277 1324 9.993454 GCAGATATCATAGATGGCATTCTATTA 57.007 33.333 0.00 2.85 36.92 0.98
1278 1325 8.715842 AGCAGATATCATAGATGGCATTCTATT 58.284 33.333 0.00 0.01 36.92 1.73
1303 1350 4.744795 ACTAGCTGACCCAATGACTTAG 57.255 45.455 0.00 0.00 0.00 2.18
1308 1355 4.985538 AGAAAAACTAGCTGACCCAATGA 58.014 39.130 0.00 0.00 0.00 2.57
1424 1472 5.208463 TGTTACTCACATGTTACTGCTGA 57.792 39.130 0.00 0.00 0.00 4.26
1471 1519 9.595823 GCAAACATGTACTTAACTCCTTATAGA 57.404 33.333 0.00 0.00 0.00 1.98
1574 1625 6.477033 GCACCACAATTAACACAAACATGTTA 59.523 34.615 12.39 0.00 42.73 2.41
1589 1640 3.446873 TGAGTCAAACAAGCACCACAATT 59.553 39.130 0.00 0.00 0.00 2.32
1659 1711 0.620556 GGGGGAAGATCTTCACAGCA 59.379 55.000 33.11 0.00 44.51 4.41
1908 1965 4.279982 TGATGCAATGTACAACCATGGAT 58.720 39.130 21.47 2.68 0.00 3.41
1931 1988 9.529325 AAGTAGAAAACAAAATAAGCCAGAAAC 57.471 29.630 0.00 0.00 0.00 2.78
1997 2056 0.991920 CATCAACTGTAGGTGGGGGT 59.008 55.000 0.00 0.00 0.00 4.95
2003 2062 0.321671 AGCACGCATCAACTGTAGGT 59.678 50.000 0.00 0.00 0.00 3.08
2010 2069 2.177531 CAGGCAGCACGCATCAAC 59.822 61.111 0.00 0.00 45.17 3.18
2018 2077 3.338249 TGAATCTAAACTCAGGCAGCAC 58.662 45.455 0.00 0.00 0.00 4.40
2025 2084 8.358895 TCATCTAGCATCTGAATCTAAACTCAG 58.641 37.037 0.00 0.00 40.42 3.35
2063 2125 7.771361 TCTGGAGTAACACAACAATAGTTTCAA 59.229 33.333 0.00 0.00 35.28 2.69
2064 2126 7.276658 TCTGGAGTAACACAACAATAGTTTCA 58.723 34.615 0.00 0.00 35.28 2.69
2083 2145 6.766944 AGCAGATGATAAAGAATGTTCTGGAG 59.233 38.462 0.00 0.00 37.65 3.86
2232 2297 0.741221 GCCTTGTAGGTCTTGAGCCG 60.741 60.000 0.00 0.00 37.80 5.52
2334 2402 1.985159 AGGGCCACAGACATAAGAACA 59.015 47.619 6.18 0.00 0.00 3.18
2350 2418 1.775385 AGAGAGCAGTTAGAGAGGGC 58.225 55.000 0.00 0.00 0.00 5.19
2791 2894 2.160721 TAACCCCAAAACACAGGCAA 57.839 45.000 0.00 0.00 0.00 4.52
2986 3155 9.206870 TCTTTCAAAACTCCAAAATGCAATATC 57.793 29.630 0.00 0.00 0.00 1.63
3016 3186 4.991153 TTTGTGATGTGTAAACCAGCAA 57.009 36.364 0.00 0.00 28.85 3.91
3048 3218 0.955919 GTGCCTTGCAGACCCTACAC 60.956 60.000 0.00 0.00 40.08 2.90
3049 3219 1.374947 GTGCCTTGCAGACCCTACA 59.625 57.895 0.00 0.00 40.08 2.74
3056 3226 0.609957 CCAGATTGGTGCCTTGCAGA 60.610 55.000 0.00 0.00 40.08 4.26
3057 3227 0.609957 TCCAGATTGGTGCCTTGCAG 60.610 55.000 0.00 0.00 40.08 4.41
3058 3228 0.178967 TTCCAGATTGGTGCCTTGCA 60.179 50.000 0.00 0.00 39.03 4.08
3062 3232 0.329596 GAGGTTCCAGATTGGTGCCT 59.670 55.000 11.06 11.06 42.19 4.75
3063 3233 0.681243 GGAGGTTCCAGATTGGTGCC 60.681 60.000 0.00 0.00 39.03 5.01
3082 3699 1.743252 GTTTGAGGGCCAGCGAGAG 60.743 63.158 6.18 0.00 0.00 3.20
3125 3742 6.301169 ACTTCCAAGGATCAAGTTAGTAGG 57.699 41.667 0.00 0.00 0.00 3.18
3137 3812 3.875369 GCATGGTGAGAACTTCCAAGGAT 60.875 47.826 0.00 0.00 34.80 3.24
3138 3813 2.553028 GCATGGTGAGAACTTCCAAGGA 60.553 50.000 0.00 0.00 34.80 3.36
3142 3817 0.770499 TGGCATGGTGAGAACTTCCA 59.230 50.000 0.00 0.00 35.64 3.53
3143 3818 1.909700 TTGGCATGGTGAGAACTTCC 58.090 50.000 0.00 0.00 0.00 3.46
3175 3850 0.455633 GCTGGTTCATCGCTTTGCAG 60.456 55.000 0.00 0.00 0.00 4.41
3176 3851 1.171549 TGCTGGTTCATCGCTTTGCA 61.172 50.000 0.00 0.00 0.00 4.08
3195 3874 5.324832 TTCTCAGACCAGAAAATTTCCCT 57.675 39.130 1.57 0.00 29.01 4.20
3207 3900 5.614324 TCAGAAGTTTCTTTCTCAGACCA 57.386 39.130 0.00 0.00 35.28 4.02
3220 3913 5.041191 TCTCTTGCTCCTTTCAGAAGTTT 57.959 39.130 0.00 0.00 0.00 2.66
3228 3921 4.900635 TGTGTTTTCTCTTGCTCCTTTC 57.099 40.909 0.00 0.00 0.00 2.62
3239 3932 6.033513 GCGCCAAGTATTAATTGTGTTTTCTC 59.966 38.462 0.00 0.00 0.00 2.87
3245 3971 4.732784 CTTGCGCCAAGTATTAATTGTGT 58.267 39.130 4.18 0.00 36.79 3.72
3260 3986 1.138247 CTGGAAAGATGCTTGCGCC 59.862 57.895 4.18 0.00 34.43 6.53
3308 4034 4.329296 TGACATACAATGGTTTTACGCG 57.671 40.909 3.53 3.53 33.60 6.01
3322 4048 5.390991 GCTTGTTAAGAGCAACCTGACATAC 60.391 44.000 6.01 0.00 39.89 2.39
3338 4064 4.538738 ACCTGGGTTACAAAGCTTGTTAA 58.461 39.130 0.00 0.00 42.22 2.01
3442 4171 8.437742 GCCATGTTTTAGTTTGATGATGAAAAG 58.562 33.333 0.00 0.00 0.00 2.27
3478 4207 3.046285 TGTTTCTTTTTCGACAGTGCG 57.954 42.857 0.00 0.00 0.00 5.34
3568 4297 4.096382 ACGTTTGGAGCCAAGCTATATTTG 59.904 41.667 13.11 0.39 39.88 2.32
3580 4310 2.715737 TGCAATAAACGTTTGGAGCC 57.284 45.000 23.46 8.38 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.