Multiple sequence alignment - TraesCS6D01G055000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G055000 chr6D 100.000 2733 0 0 1 2733 25951668 25954400 0.000000e+00 5048.0
1 TraesCS6D01G055000 chr6D 92.530 656 29 14 1 651 444356945 444356305 0.000000e+00 922.0
2 TraesCS6D01G055000 chr5D 93.062 663 34 11 1 653 437582304 437582964 0.000000e+00 959.0
3 TraesCS6D01G055000 chr2D 93.354 647 32 11 12 651 341663029 341663671 0.000000e+00 946.0
4 TraesCS6D01G055000 chr2D 92.747 648 31 12 12 653 341654912 341655549 0.000000e+00 922.0
5 TraesCS6D01G055000 chr2D 92.133 661 31 18 1 653 62702846 62703493 0.000000e+00 913.0
6 TraesCS6D01G055000 chr2D 91.793 658 35 16 1 652 62711294 62711938 0.000000e+00 898.0
7 TraesCS6D01G055000 chr2D 92.236 644 34 12 12 651 351549092 351548461 0.000000e+00 898.0
8 TraesCS6D01G055000 chr2D 93.443 366 22 2 2010 2373 257754212 257753847 2.390000e-150 542.0
9 TraesCS6D01G055000 chr2D 95.356 323 11 2 2411 2733 257749365 257749047 6.750000e-141 510.0
10 TraesCS6D01G055000 chr2D 82.927 82 14 0 1169 1250 561931458 561931377 1.050000e-09 75.0
11 TraesCS6D01G055000 chr2D 97.297 37 1 0 2383 2419 257753862 257753826 2.270000e-06 63.9
12 TraesCS6D01G055000 chr6B 92.716 659 34 6 926 1583 42423002 42423647 0.000000e+00 939.0
13 TraesCS6D01G055000 chr6B 90.000 340 17 12 652 974 42410496 42410835 9.050000e-115 424.0
14 TraesCS6D01G055000 chr6B 78.277 267 27 14 1710 1948 42423913 42424176 2.840000e-30 143.0
15 TraesCS6D01G055000 chr1D 93.045 647 31 9 11 651 109956067 109955429 0.000000e+00 933.0
16 TraesCS6D01G055000 chr1D 87.826 115 12 2 1986 2100 181810110 181809998 1.710000e-27 134.0
17 TraesCS6D01G055000 chr7D 91.704 663 34 18 1 651 137834562 137835215 0.000000e+00 900.0
18 TraesCS6D01G055000 chr7D 95.442 351 15 1 2383 2733 347161570 347161919 2.380000e-155 558.0
19 TraesCS6D01G055000 chr7D 95.157 351 16 1 2007 2356 347161226 347161576 1.110000e-153 553.0
20 TraesCS6D01G055000 chr2B 79.866 745 131 13 854 1589 707982089 707982823 6.700000e-146 527.0
21 TraesCS6D01G055000 chr2B 82.792 616 69 20 2144 2733 596646876 596646272 1.450000e-142 516.0
22 TraesCS6D01G055000 chr3A 91.213 239 17 4 2146 2382 256785692 256785456 3.390000e-84 322.0
23 TraesCS6D01G055000 chr3A 90.377 239 22 1 2382 2620 256776704 256776467 2.040000e-81 313.0
24 TraesCS6D01G055000 chr3A 93.525 139 7 2 2015 2152 256862161 256862024 3.570000e-49 206.0
25 TraesCS6D01G055000 chr3D 89.655 116 10 2 2010 2124 334121424 334121310 2.190000e-31 147.0
26 TraesCS6D01G055000 chr3D 94.565 92 4 1 2010 2100 293185213 293185122 1.020000e-29 141.0
27 TraesCS6D01G055000 chr3D 92.553 94 7 0 2006 2099 239806658 239806751 4.750000e-28 135.0
28 TraesCS6D01G055000 chr3D 100.000 31 0 0 1670 1700 574785612 574785642 1.060000e-04 58.4
29 TraesCS6D01G055000 chrUn 93.333 90 6 0 2010 2099 79463458 79463369 1.710000e-27 134.0
30 TraesCS6D01G055000 chr1A 91.579 95 8 0 2005 2099 62943941 62944035 6.140000e-27 132.0
31 TraesCS6D01G055000 chr7B 81.522 92 8 6 1616 1699 325983016 325982926 1.760000e-07 67.6
32 TraesCS6D01G055000 chr4B 81.522 92 8 6 1616 1699 635462226 635462136 1.760000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G055000 chr6D 25951668 25954400 2732 False 5048.0 5048 100.0000 1 2733 1 chr6D.!!$F1 2732
1 TraesCS6D01G055000 chr6D 444356305 444356945 640 True 922.0 922 92.5300 1 651 1 chr6D.!!$R1 650
2 TraesCS6D01G055000 chr5D 437582304 437582964 660 False 959.0 959 93.0620 1 653 1 chr5D.!!$F1 652
3 TraesCS6D01G055000 chr2D 341663029 341663671 642 False 946.0 946 93.3540 12 651 1 chr2D.!!$F4 639
4 TraesCS6D01G055000 chr2D 341654912 341655549 637 False 922.0 922 92.7470 12 653 1 chr2D.!!$F3 641
5 TraesCS6D01G055000 chr2D 62702846 62703493 647 False 913.0 913 92.1330 1 653 1 chr2D.!!$F1 652
6 TraesCS6D01G055000 chr2D 62711294 62711938 644 False 898.0 898 91.7930 1 652 1 chr2D.!!$F2 651
7 TraesCS6D01G055000 chr2D 351548461 351549092 631 True 898.0 898 92.2360 12 651 1 chr2D.!!$R2 639
8 TraesCS6D01G055000 chr6B 42423002 42424176 1174 False 541.0 939 85.4965 926 1948 2 chr6B.!!$F2 1022
9 TraesCS6D01G055000 chr1D 109955429 109956067 638 True 933.0 933 93.0450 11 651 1 chr1D.!!$R1 640
10 TraesCS6D01G055000 chr7D 137834562 137835215 653 False 900.0 900 91.7040 1 651 1 chr7D.!!$F1 650
11 TraesCS6D01G055000 chr7D 347161226 347161919 693 False 555.5 558 95.2995 2007 2733 2 chr7D.!!$F2 726
12 TraesCS6D01G055000 chr2B 707982089 707982823 734 False 527.0 527 79.8660 854 1589 1 chr2B.!!$F1 735
13 TraesCS6D01G055000 chr2B 596646272 596646876 604 True 516.0 516 82.7920 2144 2733 1 chr2B.!!$R1 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
789 825 0.306533 ACGCGTGATGAAACCACAAC 59.693 50.0 12.93 0.0 34.36 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1880 2129 0.030638 GCGTTGTGTGTTGCCTTCAT 59.969 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
205 222 2.924713 CGCGGGAAAAATTGCGTAG 58.075 52.632 0.00 0.00 45.12 3.51
525 558 9.554724 TCAAATAAGAAAATTCGAGAAAATCCG 57.445 29.630 0.00 0.00 0.00 4.18
535 570 2.996621 CGAGAAAATCCGCAACTCTCTT 59.003 45.455 0.00 0.00 32.13 2.85
657 693 9.618890 TGAAAATTTGGGATGTTACAAAAATCA 57.381 25.926 0.00 0.00 39.69 2.57
666 702 9.878599 GGGATGTTACAAAAATCATAATAGTCG 57.121 33.333 0.00 0.00 0.00 4.18
680 716 8.959705 TCATAATAGTCGTCTTCTTCTACTGA 57.040 34.615 0.00 0.00 0.00 3.41
681 717 9.562408 TCATAATAGTCGTCTTCTTCTACTGAT 57.438 33.333 0.00 0.00 0.00 2.90
688 724 8.293867 AGTCGTCTTCTTCTACTGATTATATGC 58.706 37.037 0.00 0.00 0.00 3.14
689 725 7.539366 GTCGTCTTCTTCTACTGATTATATGCC 59.461 40.741 0.00 0.00 0.00 4.40
690 726 7.230712 TCGTCTTCTTCTACTGATTATATGCCA 59.769 37.037 0.00 0.00 0.00 4.92
691 727 7.327275 CGTCTTCTTCTACTGATTATATGCCAC 59.673 40.741 0.00 0.00 0.00 5.01
692 728 8.364142 GTCTTCTTCTACTGATTATATGCCACT 58.636 37.037 0.00 0.00 0.00 4.00
693 729 8.580720 TCTTCTTCTACTGATTATATGCCACTC 58.419 37.037 0.00 0.00 0.00 3.51
694 730 7.839680 TCTTCTACTGATTATATGCCACTCA 57.160 36.000 0.00 0.00 0.00 3.41
695 731 7.661968 TCTTCTACTGATTATATGCCACTCAC 58.338 38.462 0.00 0.00 0.00 3.51
696 732 7.507277 TCTTCTACTGATTATATGCCACTCACT 59.493 37.037 0.00 0.00 0.00 3.41
697 733 6.986250 TCTACTGATTATATGCCACTCACTG 58.014 40.000 0.00 0.00 0.00 3.66
698 734 4.384056 ACTGATTATATGCCACTCACTGC 58.616 43.478 0.00 0.00 0.00 4.40
699 735 4.141642 ACTGATTATATGCCACTCACTGCA 60.142 41.667 0.00 0.00 42.52 4.41
706 742 3.853831 TGCCACTCACTGCATAAATTG 57.146 42.857 0.00 0.00 31.31 2.32
707 743 3.419943 TGCCACTCACTGCATAAATTGA 58.580 40.909 0.00 0.00 31.31 2.57
708 744 3.825585 TGCCACTCACTGCATAAATTGAA 59.174 39.130 0.00 0.00 31.31 2.69
709 745 4.280425 TGCCACTCACTGCATAAATTGAAA 59.720 37.500 0.00 0.00 31.31 2.69
710 746 5.047164 TGCCACTCACTGCATAAATTGAAAT 60.047 36.000 0.00 0.00 31.31 2.17
711 747 5.870978 GCCACTCACTGCATAAATTGAAATT 59.129 36.000 0.00 0.00 0.00 1.82
712 748 6.183360 GCCACTCACTGCATAAATTGAAATTG 60.183 38.462 0.00 0.00 0.00 2.32
713 749 7.092079 CCACTCACTGCATAAATTGAAATTGA 58.908 34.615 0.00 0.00 0.00 2.57
714 750 7.274904 CCACTCACTGCATAAATTGAAATTGAG 59.725 37.037 0.00 0.00 31.82 3.02
715 751 7.811236 CACTCACTGCATAAATTGAAATTGAGT 59.189 33.333 0.00 0.00 35.60 3.41
716 752 9.013229 ACTCACTGCATAAATTGAAATTGAGTA 57.987 29.630 0.00 0.00 34.54 2.59
717 753 9.844790 CTCACTGCATAAATTGAAATTGAGTAA 57.155 29.630 0.00 0.00 0.00 2.24
744 780 7.969690 ACTAGAATCTGGAAAGATCTTCTGA 57.030 36.000 8.78 7.26 0.00 3.27
745 781 8.551682 ACTAGAATCTGGAAAGATCTTCTGAT 57.448 34.615 8.78 9.20 35.26 2.90
746 782 9.653516 ACTAGAATCTGGAAAGATCTTCTGATA 57.346 33.333 8.78 0.00 32.19 2.15
753 789 8.428063 TCTGGAAAGATCTTCTGATAAATCTCC 58.572 37.037 8.78 8.34 32.19 3.71
754 790 8.094284 TGGAAAGATCTTCTGATAAATCTCCA 57.906 34.615 8.78 10.86 32.19 3.86
755 791 8.721479 TGGAAAGATCTTCTGATAAATCTCCAT 58.279 33.333 8.78 0.00 32.19 3.41
756 792 9.571816 GGAAAGATCTTCTGATAAATCTCCATT 57.428 33.333 8.78 0.00 32.19 3.16
758 794 8.921353 AAGATCTTCTGATAAATCTCCATTGG 57.079 34.615 0.88 0.00 32.19 3.16
759 795 8.043429 AGATCTTCTGATAAATCTCCATTGGT 57.957 34.615 1.86 0.00 32.19 3.67
760 796 8.156165 AGATCTTCTGATAAATCTCCATTGGTC 58.844 37.037 1.86 0.00 32.19 4.02
761 797 7.199167 TCTTCTGATAAATCTCCATTGGTCA 57.801 36.000 1.86 0.00 0.00 4.02
762 798 7.809238 TCTTCTGATAAATCTCCATTGGTCAT 58.191 34.615 1.86 0.00 0.00 3.06
763 799 8.277197 TCTTCTGATAAATCTCCATTGGTCATT 58.723 33.333 1.86 0.00 0.00 2.57
764 800 8.827832 TTCTGATAAATCTCCATTGGTCATTT 57.172 30.769 14.80 14.80 0.00 2.32
765 801 8.455903 TCTGATAAATCTCCATTGGTCATTTC 57.544 34.615 14.18 6.21 0.00 2.17
766 802 8.054572 TCTGATAAATCTCCATTGGTCATTTCA 58.945 33.333 14.18 9.17 0.00 2.69
767 803 8.771521 TGATAAATCTCCATTGGTCATTTCAT 57.228 30.769 14.18 9.07 0.00 2.57
768 804 9.204337 TGATAAATCTCCATTGGTCATTTCATT 57.796 29.630 14.18 5.50 0.00 2.57
772 808 6.435430 TCTCCATTGGTCATTTCATTTACG 57.565 37.500 1.86 0.00 0.00 3.18
773 809 4.992688 TCCATTGGTCATTTCATTTACGC 58.007 39.130 1.86 0.00 0.00 4.42
774 810 3.790820 CCATTGGTCATTTCATTTACGCG 59.209 43.478 3.53 3.53 0.00 6.01
775 811 4.411327 CATTGGTCATTTCATTTACGCGT 58.589 39.130 19.17 19.17 0.00 6.01
776 812 3.463533 TGGTCATTTCATTTACGCGTG 57.536 42.857 24.59 4.79 0.00 5.34
777 813 3.067833 TGGTCATTTCATTTACGCGTGA 58.932 40.909 24.59 11.94 0.00 4.35
778 814 3.687212 TGGTCATTTCATTTACGCGTGAT 59.313 39.130 24.59 13.18 0.00 3.06
779 815 4.028383 GGTCATTTCATTTACGCGTGATG 58.972 43.478 24.59 23.85 0.00 3.07
780 816 4.201773 GGTCATTTCATTTACGCGTGATGA 60.202 41.667 26.23 26.23 0.00 2.92
781 817 5.320723 GTCATTTCATTTACGCGTGATGAA 58.679 37.500 31.50 31.50 37.85 2.57
783 819 5.792962 TCATTTCATTTACGCGTGATGAAAC 59.207 36.000 38.46 0.00 46.45 2.78
784 820 3.733024 TCATTTACGCGTGATGAAACC 57.267 42.857 27.18 0.00 0.00 3.27
785 821 3.067833 TCATTTACGCGTGATGAAACCA 58.932 40.909 27.18 12.26 0.00 3.67
786 822 2.953640 TTTACGCGTGATGAAACCAC 57.046 45.000 24.59 0.00 0.00 4.16
787 823 1.867166 TTACGCGTGATGAAACCACA 58.133 45.000 24.59 0.00 34.36 4.17
788 824 1.867166 TACGCGTGATGAAACCACAA 58.133 45.000 24.59 0.00 34.36 3.33
789 825 0.306533 ACGCGTGATGAAACCACAAC 59.693 50.000 12.93 0.00 34.36 3.32
790 826 0.385473 CGCGTGATGAAACCACAACC 60.385 55.000 0.00 0.00 34.36 3.77
791 827 0.665835 GCGTGATGAAACCACAACCA 59.334 50.000 0.00 0.00 34.36 3.67
792 828 1.269448 GCGTGATGAAACCACAACCAT 59.731 47.619 0.00 0.00 34.36 3.55
793 829 2.486203 GCGTGATGAAACCACAACCATA 59.514 45.455 0.00 0.00 34.36 2.74
794 830 3.128589 GCGTGATGAAACCACAACCATAT 59.871 43.478 0.00 0.00 34.36 1.78
795 831 4.380444 GCGTGATGAAACCACAACCATATT 60.380 41.667 0.00 0.00 34.36 1.28
796 832 5.163703 GCGTGATGAAACCACAACCATATTA 60.164 40.000 0.00 0.00 34.36 0.98
797 833 6.459573 GCGTGATGAAACCACAACCATATTAT 60.460 38.462 0.00 0.00 34.36 1.28
798 834 7.479980 CGTGATGAAACCACAACCATATTATT 58.520 34.615 0.00 0.00 34.36 1.40
799 835 7.973388 CGTGATGAAACCACAACCATATTATTT 59.027 33.333 0.00 0.00 34.36 1.40
800 836 9.651913 GTGATGAAACCACAACCATATTATTTT 57.348 29.630 0.00 0.00 34.81 1.82
801 837 9.868277 TGATGAAACCACAACCATATTATTTTC 57.132 29.630 0.00 0.00 0.00 2.29
822 858 7.989416 TTTCTATGTTTTAAATCTGGACCGT 57.011 32.000 0.00 0.00 0.00 4.83
823 859 7.989416 TTCTATGTTTTAAATCTGGACCGTT 57.011 32.000 0.00 0.00 0.00 4.44
824 860 7.989416 TCTATGTTTTAAATCTGGACCGTTT 57.011 32.000 0.00 0.00 0.00 3.60
825 861 7.812648 TCTATGTTTTAAATCTGGACCGTTTG 58.187 34.615 0.00 0.00 0.00 2.93
826 862 4.612943 TGTTTTAAATCTGGACCGTTTGC 58.387 39.130 0.00 0.00 0.00 3.68
827 863 4.339814 TGTTTTAAATCTGGACCGTTTGCT 59.660 37.500 0.00 0.00 0.00 3.91
828 864 5.163499 TGTTTTAAATCTGGACCGTTTGCTT 60.163 36.000 0.00 0.00 0.00 3.91
829 865 5.523438 TTTAAATCTGGACCGTTTGCTTT 57.477 34.783 0.00 0.00 0.00 3.51
830 866 6.636562 TTTAAATCTGGACCGTTTGCTTTA 57.363 33.333 0.00 0.00 0.00 1.85
831 867 6.827586 TTAAATCTGGACCGTTTGCTTTAT 57.172 33.333 0.00 0.00 0.00 1.40
832 868 7.925043 TTAAATCTGGACCGTTTGCTTTATA 57.075 32.000 0.00 0.00 0.00 0.98
833 869 8.514330 TTAAATCTGGACCGTTTGCTTTATAT 57.486 30.769 0.00 0.00 0.00 0.86
834 870 7.404671 AAATCTGGACCGTTTGCTTTATATT 57.595 32.000 0.00 0.00 0.00 1.28
835 871 5.811399 TCTGGACCGTTTGCTTTATATTG 57.189 39.130 0.00 0.00 0.00 1.90
836 872 4.095782 TCTGGACCGTTTGCTTTATATTGC 59.904 41.667 0.00 0.00 0.00 3.56
837 873 4.013728 TGGACCGTTTGCTTTATATTGCT 58.986 39.130 0.00 0.00 0.00 3.91
838 874 4.461081 TGGACCGTTTGCTTTATATTGCTT 59.539 37.500 0.00 0.00 0.00 3.91
839 875 5.047660 TGGACCGTTTGCTTTATATTGCTTT 60.048 36.000 0.00 0.00 0.00 3.51
840 876 6.151312 TGGACCGTTTGCTTTATATTGCTTTA 59.849 34.615 0.00 0.00 0.00 1.85
841 877 7.030768 GGACCGTTTGCTTTATATTGCTTTAA 58.969 34.615 0.00 0.00 0.00 1.52
842 878 7.008901 GGACCGTTTGCTTTATATTGCTTTAAC 59.991 37.037 0.00 0.00 0.00 2.01
843 879 7.371936 ACCGTTTGCTTTATATTGCTTTAACA 58.628 30.769 0.00 0.00 0.00 2.41
844 880 7.868415 ACCGTTTGCTTTATATTGCTTTAACAA 59.132 29.630 0.00 0.00 0.00 2.83
845 881 8.868916 CCGTTTGCTTTATATTGCTTTAACAAT 58.131 29.630 0.00 0.00 42.73 2.71
916 953 4.754114 GCCATTTTAATTGTTGTGCCAAGA 59.246 37.500 0.00 0.00 0.00 3.02
924 961 0.804989 GTTGTGCCAAGATCCTTCGG 59.195 55.000 0.00 0.00 0.00 4.30
1030 1081 2.832563 TGACGCACAAAACATCTCAGA 58.167 42.857 0.00 0.00 0.00 3.27
1031 1082 2.543848 TGACGCACAAAACATCTCAGAC 59.456 45.455 0.00 0.00 0.00 3.51
1032 1083 1.526887 ACGCACAAAACATCTCAGACG 59.473 47.619 0.00 0.00 0.00 4.18
1100 1151 1.027255 TCTCGCTTCTCGTCCTCCTG 61.027 60.000 0.00 0.00 39.67 3.86
1115 1166 3.767806 CTGCTGCTCCTCGCCTCA 61.768 66.667 0.00 0.00 38.05 3.86
1259 1310 3.469970 ATCGCCACTGGGATCGCA 61.470 61.111 12.41 12.41 39.79 5.10
1396 1447 2.125512 GTTCGACGAGGCAGCCAT 60.126 61.111 15.80 0.00 0.00 4.40
1397 1448 1.741770 GTTCGACGAGGCAGCCATT 60.742 57.895 15.80 0.00 0.00 3.16
1399 1450 0.605319 TTCGACGAGGCAGCCATTTT 60.605 50.000 15.80 0.00 0.00 1.82
1551 1602 3.132160 GAGATGGAGTGCATCATCACTG 58.868 50.000 24.46 0.00 46.40 3.66
1591 1655 0.099968 CGTGTAGTTAGCTAGCCGCA 59.900 55.000 12.13 1.03 42.61 5.69
1592 1656 1.269102 CGTGTAGTTAGCTAGCCGCAT 60.269 52.381 12.13 0.00 42.61 4.73
1593 1657 2.395654 GTGTAGTTAGCTAGCCGCATC 58.604 52.381 12.13 0.00 42.61 3.91
1594 1658 2.028876 TGTAGTTAGCTAGCCGCATCA 58.971 47.619 12.13 1.56 42.61 3.07
1595 1659 2.628178 TGTAGTTAGCTAGCCGCATCAT 59.372 45.455 12.13 0.00 42.61 2.45
1596 1660 2.447244 AGTTAGCTAGCCGCATCATC 57.553 50.000 12.13 0.00 42.61 2.92
1597 1661 1.688735 AGTTAGCTAGCCGCATCATCA 59.311 47.619 12.13 0.00 42.61 3.07
1598 1662 1.795286 GTTAGCTAGCCGCATCATCAC 59.205 52.381 12.13 0.00 42.61 3.06
1599 1663 0.039165 TAGCTAGCCGCATCATCACG 60.039 55.000 12.13 0.00 42.61 4.35
1600 1664 1.592669 GCTAGCCGCATCATCACGT 60.593 57.895 2.29 0.00 38.92 4.49
1601 1665 1.825285 GCTAGCCGCATCATCACGTG 61.825 60.000 9.94 9.94 38.92 4.49
1602 1666 1.825285 CTAGCCGCATCATCACGTGC 61.825 60.000 11.67 0.00 37.97 5.34
1603 1667 4.241999 GCCGCATCATCACGTGCC 62.242 66.667 11.67 0.00 38.08 5.01
1605 1669 2.819154 CGCATCATCACGTGCCCA 60.819 61.111 11.67 0.00 38.08 5.36
1607 1671 1.450134 GCATCATCACGTGCCCAGA 60.450 57.895 11.67 6.11 35.35 3.86
1608 1672 1.026182 GCATCATCACGTGCCCAGAA 61.026 55.000 11.67 0.00 35.35 3.02
1609 1673 1.452110 CATCATCACGTGCCCAGAAA 58.548 50.000 11.67 0.00 0.00 2.52
1611 1675 1.522668 TCATCACGTGCCCAGAAAAG 58.477 50.000 11.67 0.00 0.00 2.27
1612 1676 1.071542 TCATCACGTGCCCAGAAAAGA 59.928 47.619 11.67 0.00 0.00 2.52
1614 1678 0.468226 TCACGTGCCCAGAAAAGAGT 59.532 50.000 11.67 0.00 0.00 3.24
1615 1679 1.134220 TCACGTGCCCAGAAAAGAGTT 60.134 47.619 11.67 0.00 0.00 3.01
1616 1680 1.002468 CACGTGCCCAGAAAAGAGTTG 60.002 52.381 0.82 0.00 0.00 3.16
1617 1681 0.040067 CGTGCCCAGAAAAGAGTTGC 60.040 55.000 0.00 0.00 0.00 4.17
1620 1684 2.036346 GTGCCCAGAAAAGAGTTGCAAT 59.964 45.455 0.59 0.00 0.00 3.56
1621 1685 3.255642 GTGCCCAGAAAAGAGTTGCAATA 59.744 43.478 0.59 0.00 0.00 1.90
1623 1846 4.527816 TGCCCAGAAAAGAGTTGCAATATT 59.472 37.500 0.59 0.00 0.00 1.28
1677 1900 9.890629 AATATGAATTTTTAAAAAGGAGGCCTC 57.109 29.630 25.59 25.59 30.89 4.70
1678 1901 6.994421 TGAATTTTTAAAAAGGAGGCCTCT 57.006 33.333 31.36 14.55 30.89 3.69
1679 1902 8.664669 ATGAATTTTTAAAAAGGAGGCCTCTA 57.335 30.769 31.36 13.46 30.89 2.43
1680 1903 8.664669 TGAATTTTTAAAAAGGAGGCCTCTAT 57.335 30.769 31.36 18.15 30.89 1.98
1681 1904 8.531146 TGAATTTTTAAAAAGGAGGCCTCTATG 58.469 33.333 31.36 0.00 30.89 2.23
1682 1905 6.850752 TTTTTAAAAAGGAGGCCTCTATGG 57.149 37.500 31.36 0.00 39.35 2.74
1683 1906 5.789574 TTTAAAAAGGAGGCCTCTATGGA 57.210 39.130 31.36 10.83 38.35 3.41
1684 1907 3.941704 AAAAAGGAGGCCTCTATGGAG 57.058 47.619 31.36 0.00 38.35 3.86
1685 1908 1.135960 AAAGGAGGCCTCTATGGAGC 58.864 55.000 31.36 13.49 38.21 4.70
1686 1909 0.267356 AAGGAGGCCTCTATGGAGCT 59.733 55.000 31.36 15.62 38.21 4.09
1687 1910 0.178935 AGGAGGCCTCTATGGAGCTC 60.179 60.000 31.36 11.99 38.21 4.09
1688 1911 1.531739 GGAGGCCTCTATGGAGCTCG 61.532 65.000 31.36 0.00 38.21 5.03
1689 1912 1.531739 GAGGCCTCTATGGAGCTCGG 61.532 65.000 26.25 2.99 38.21 4.63
1690 1913 2.341911 GCCTCTATGGAGCTCGGC 59.658 66.667 11.57 11.57 38.21 5.54
1691 1914 3.055580 CCTCTATGGAGCTCGGCC 58.944 66.667 7.83 0.00 38.21 6.13
1692 1915 1.532794 CCTCTATGGAGCTCGGCCT 60.533 63.158 7.83 0.00 38.21 5.19
1693 1916 1.531739 CCTCTATGGAGCTCGGCCTC 61.532 65.000 7.83 0.00 38.21 4.70
1699 1922 3.896479 GAGCTCGGCCTCCAAAAG 58.104 61.111 0.00 0.00 0.00 2.27
1700 1923 2.360475 AGCTCGGCCTCCAAAAGC 60.360 61.111 0.00 0.00 0.00 3.51
1701 1924 2.672996 GCTCGGCCTCCAAAAGCA 60.673 61.111 0.00 0.00 33.21 3.91
1702 1925 2.694760 GCTCGGCCTCCAAAAGCAG 61.695 63.158 0.00 0.00 33.21 4.24
1703 1926 1.302832 CTCGGCCTCCAAAAGCAGT 60.303 57.895 0.00 0.00 0.00 4.40
1704 1927 0.036388 CTCGGCCTCCAAAAGCAGTA 60.036 55.000 0.00 0.00 0.00 2.74
1705 1928 0.618458 TCGGCCTCCAAAAGCAGTAT 59.382 50.000 0.00 0.00 0.00 2.12
1706 1929 1.004277 TCGGCCTCCAAAAGCAGTATT 59.996 47.619 0.00 0.00 0.00 1.89
1707 1930 1.818674 CGGCCTCCAAAAGCAGTATTT 59.181 47.619 0.00 0.00 0.00 1.40
1708 1931 2.415893 CGGCCTCCAAAAGCAGTATTTG 60.416 50.000 0.00 0.00 37.48 2.32
1716 1939 0.704076 AAGCAGTATTTGGGGGAGCA 59.296 50.000 0.00 0.00 0.00 4.26
1726 1949 2.383442 TGGGGGAGCACTCTCTATAC 57.617 55.000 0.00 0.00 39.31 1.47
1776 2000 4.485163 GTGTTGGCGCATATTTCTTTTCT 58.515 39.130 10.83 0.00 0.00 2.52
1777 2001 5.636837 GTGTTGGCGCATATTTCTTTTCTA 58.363 37.500 10.83 0.00 0.00 2.10
1781 2005 5.129634 TGGCGCATATTTCTTTTCTATGGA 58.870 37.500 10.83 0.00 0.00 3.41
1830 2054 0.686769 ACGGCGATACCTTTCCCTCT 60.687 55.000 16.62 0.00 35.61 3.69
1833 2057 1.001068 GGCGATACCTTTCCCTCTAGC 59.999 57.143 0.00 0.00 34.51 3.42
1834 2058 1.964933 GCGATACCTTTCCCTCTAGCT 59.035 52.381 0.00 0.00 0.00 3.32
1835 2059 3.155501 GCGATACCTTTCCCTCTAGCTA 58.844 50.000 0.00 0.00 0.00 3.32
1836 2060 3.573110 GCGATACCTTTCCCTCTAGCTAA 59.427 47.826 0.00 0.00 0.00 3.09
1837 2061 4.221041 GCGATACCTTTCCCTCTAGCTAAT 59.779 45.833 0.00 0.00 0.00 1.73
1838 2062 5.279556 GCGATACCTTTCCCTCTAGCTAATT 60.280 44.000 0.00 0.00 0.00 1.40
1839 2063 6.071503 GCGATACCTTTCCCTCTAGCTAATTA 60.072 42.308 0.00 0.00 0.00 1.40
1840 2064 7.525029 GCGATACCTTTCCCTCTAGCTAATTAA 60.525 40.741 0.00 0.00 0.00 1.40
1841 2065 8.030106 CGATACCTTTCCCTCTAGCTAATTAAG 58.970 40.741 0.00 0.00 0.00 1.85
1842 2066 6.502074 ACCTTTCCCTCTAGCTAATTAAGG 57.498 41.667 0.00 5.27 36.55 2.69
1845 2069 4.845530 TCCCTCTAGCTAATTAAGGGGA 57.154 45.455 21.39 15.65 45.70 4.81
1846 2070 5.166013 TCCCTCTAGCTAATTAAGGGGAA 57.834 43.478 21.39 8.14 45.70 3.97
1847 2071 5.544682 TCCCTCTAGCTAATTAAGGGGAAA 58.455 41.667 21.39 7.63 45.70 3.13
1848 2072 5.607171 TCCCTCTAGCTAATTAAGGGGAAAG 59.393 44.000 21.39 0.74 45.70 2.62
1850 2074 5.607171 CCTCTAGCTAATTAAGGGGAAAGGA 59.393 44.000 0.00 0.00 32.08 3.36
1851 2075 6.239743 CCTCTAGCTAATTAAGGGGAAAGGAG 60.240 46.154 0.00 0.00 32.08 3.69
1853 2077 7.082972 TCTAGCTAATTAAGGGGAAAGGAGAT 58.917 38.462 0.00 0.00 0.00 2.75
1854 2078 6.598427 AGCTAATTAAGGGGAAAGGAGATT 57.402 37.500 0.00 0.00 0.00 2.40
1856 2080 8.114301 AGCTAATTAAGGGGAAAGGAGATTAA 57.886 34.615 0.00 0.00 0.00 1.40
1874 2123 5.979517 AGATTAAGCGGCAGAAATATTTTGC 59.020 36.000 18.91 18.91 37.11 3.68
1881 2130 4.677673 GCAGAAATATTTTGCCAGGGAT 57.322 40.909 17.45 0.00 31.79 3.85
1905 2154 0.913876 GCAACACACAACGCTGAAAC 59.086 50.000 0.00 0.00 0.00 2.78
1911 2160 2.080693 ACACAACGCTGAAACTGTTGA 58.919 42.857 10.89 0.00 44.34 3.18
1918 2167 2.599848 CGCTGAAACTGTTGAGAAACCG 60.600 50.000 0.00 0.00 0.00 4.44
1920 2169 2.290641 CTGAAACTGTTGAGAAACCGGG 59.709 50.000 6.32 0.00 0.00 5.73
1971 2220 3.009115 TGGCACACCTCCTAGCCC 61.009 66.667 0.00 0.00 46.45 5.19
1972 2221 3.798511 GGCACACCTCCTAGCCCC 61.799 72.222 0.00 0.00 41.25 5.80
1973 2222 2.689034 GCACACCTCCTAGCCCCT 60.689 66.667 0.00 0.00 0.00 4.79
1974 2223 1.382695 GCACACCTCCTAGCCCCTA 60.383 63.158 0.00 0.00 0.00 3.53
1975 2224 1.687297 GCACACCTCCTAGCCCCTAC 61.687 65.000 0.00 0.00 0.00 3.18
1976 2225 1.049289 CACACCTCCTAGCCCCTACC 61.049 65.000 0.00 0.00 0.00 3.18
1977 2226 1.313475 CACCTCCTAGCCCCTACCA 59.687 63.158 0.00 0.00 0.00 3.25
1978 2227 0.104934 CACCTCCTAGCCCCTACCAT 60.105 60.000 0.00 0.00 0.00 3.55
1979 2228 0.648301 ACCTCCTAGCCCCTACCATT 59.352 55.000 0.00 0.00 0.00 3.16
1980 2229 1.353091 CCTCCTAGCCCCTACCATTC 58.647 60.000 0.00 0.00 0.00 2.67
1981 2230 1.353091 CTCCTAGCCCCTACCATTCC 58.647 60.000 0.00 0.00 0.00 3.01
1982 2231 0.471211 TCCTAGCCCCTACCATTCCG 60.471 60.000 0.00 0.00 0.00 4.30
1983 2232 1.371558 CTAGCCCCTACCATTCCGC 59.628 63.158 0.00 0.00 0.00 5.54
1984 2233 1.383386 TAGCCCCTACCATTCCGCA 60.383 57.895 0.00 0.00 0.00 5.69
1985 2234 1.692173 TAGCCCCTACCATTCCGCAC 61.692 60.000 0.00 0.00 0.00 5.34
1986 2235 3.043999 GCCCCTACCATTCCGCACT 62.044 63.158 0.00 0.00 0.00 4.40
1987 2236 1.607612 CCCCTACCATTCCGCACTT 59.392 57.895 0.00 0.00 0.00 3.16
1988 2237 0.034477 CCCCTACCATTCCGCACTTT 60.034 55.000 0.00 0.00 0.00 2.66
1989 2238 1.210967 CCCCTACCATTCCGCACTTTA 59.789 52.381 0.00 0.00 0.00 1.85
1990 2239 2.158667 CCCCTACCATTCCGCACTTTAT 60.159 50.000 0.00 0.00 0.00 1.40
1991 2240 2.878406 CCCTACCATTCCGCACTTTATG 59.122 50.000 0.00 0.00 0.00 1.90
1992 2241 3.541632 CCTACCATTCCGCACTTTATGT 58.458 45.455 0.00 0.00 0.00 2.29
1993 2242 3.945285 CCTACCATTCCGCACTTTATGTT 59.055 43.478 0.00 0.00 0.00 2.71
1994 2243 5.120399 CCTACCATTCCGCACTTTATGTTA 58.880 41.667 0.00 0.00 0.00 2.41
1995 2244 5.763204 CCTACCATTCCGCACTTTATGTTAT 59.237 40.000 0.00 0.00 0.00 1.89
1996 2245 5.499139 ACCATTCCGCACTTTATGTTATG 57.501 39.130 0.00 0.00 0.00 1.90
1997 2246 4.947388 ACCATTCCGCACTTTATGTTATGT 59.053 37.500 0.00 0.00 0.00 2.29
1998 2247 5.163663 ACCATTCCGCACTTTATGTTATGTG 60.164 40.000 0.00 0.00 0.00 3.21
1999 2248 4.955925 TTCCGCACTTTATGTTATGTGG 57.044 40.909 0.00 0.00 42.87 4.17
2000 2249 3.275143 TCCGCACTTTATGTTATGTGGG 58.725 45.455 3.05 0.00 42.00 4.61
2001 2250 3.013921 CCGCACTTTATGTTATGTGGGT 58.986 45.455 0.00 0.00 40.29 4.51
2002 2251 4.081031 TCCGCACTTTATGTTATGTGGGTA 60.081 41.667 0.00 0.00 42.00 3.69
2003 2252 4.034742 CCGCACTTTATGTTATGTGGGTAC 59.965 45.833 0.00 0.00 40.29 3.34
2004 2253 4.873827 CGCACTTTATGTTATGTGGGTACT 59.126 41.667 0.00 0.00 38.16 2.73
2005 2254 5.353123 CGCACTTTATGTTATGTGGGTACTT 59.647 40.000 0.00 0.00 38.16 2.24
2006 2255 6.535865 CGCACTTTATGTTATGTGGGTACTTA 59.464 38.462 0.00 0.00 38.16 2.24
2007 2256 7.225931 CGCACTTTATGTTATGTGGGTACTTAT 59.774 37.037 0.00 0.00 38.16 1.73
2008 2257 8.899771 GCACTTTATGTTATGTGGGTACTTATT 58.100 33.333 0.00 0.00 0.00 1.40
2063 2312 2.680312 TCTCTTGACATGCAGCCTAC 57.320 50.000 0.00 0.00 0.00 3.18
2078 2327 2.181419 AGCCTACCCACCTCACCATATA 59.819 50.000 0.00 0.00 0.00 0.86
2103 2352 1.210234 CCACACATGCCACCTCATCTA 59.790 52.381 0.00 0.00 0.00 1.98
2105 2354 2.876550 CACACATGCCACCTCATCTATG 59.123 50.000 0.00 0.00 0.00 2.23
2233 2483 4.101585 ACAGGAGAGACAACAGTTCATGAA 59.898 41.667 3.38 3.38 0.00 2.57
2258 2514 1.534729 ATTTCCTCCGCAAACTGACC 58.465 50.000 0.00 0.00 0.00 4.02
2316 2573 0.325296 TACTCCATCCAGACGCCCTT 60.325 55.000 0.00 0.00 0.00 3.95
2351 2642 3.806667 GCAGGCCTCCATGCTCCT 61.807 66.667 0.00 0.00 39.38 3.69
2352 2643 2.509916 CAGGCCTCCATGCTCCTC 59.490 66.667 0.00 0.00 0.00 3.71
2353 2644 2.771762 AGGCCTCCATGCTCCTCC 60.772 66.667 0.00 0.00 0.00 4.30
2354 2645 3.092511 GGCCTCCATGCTCCTCCA 61.093 66.667 0.00 0.00 0.00 3.86
2355 2646 2.459086 GGCCTCCATGCTCCTCCAT 61.459 63.158 0.00 0.00 0.00 3.41
2356 2647 1.130054 GGCCTCCATGCTCCTCCATA 61.130 60.000 0.00 0.00 0.00 2.74
2357 2648 0.036022 GCCTCCATGCTCCTCCATAC 59.964 60.000 0.00 0.00 0.00 2.39
2358 2649 0.689623 CCTCCATGCTCCTCCATACC 59.310 60.000 0.00 0.00 0.00 2.73
2359 2650 1.427809 CTCCATGCTCCTCCATACCA 58.572 55.000 0.00 0.00 0.00 3.25
2360 2651 1.071385 CTCCATGCTCCTCCATACCAC 59.929 57.143 0.00 0.00 0.00 4.16
2361 2652 0.839277 CCATGCTCCTCCATACCACA 59.161 55.000 0.00 0.00 0.00 4.17
2362 2653 1.202734 CCATGCTCCTCCATACCACAG 60.203 57.143 0.00 0.00 0.00 3.66
2363 2654 0.471617 ATGCTCCTCCATACCACAGC 59.528 55.000 0.00 0.00 0.00 4.40
2364 2655 1.147153 GCTCCTCCATACCACAGCC 59.853 63.158 0.00 0.00 0.00 4.85
2365 2656 1.341156 GCTCCTCCATACCACAGCCT 61.341 60.000 0.00 0.00 0.00 4.58
2366 2657 1.207791 CTCCTCCATACCACAGCCTT 58.792 55.000 0.00 0.00 0.00 4.35
2367 2658 0.911769 TCCTCCATACCACAGCCTTG 59.088 55.000 0.00 0.00 0.00 3.61
2368 2659 0.911769 CCTCCATACCACAGCCTTGA 59.088 55.000 0.00 0.00 0.00 3.02
2369 2660 1.281867 CCTCCATACCACAGCCTTGAA 59.718 52.381 0.00 0.00 0.00 2.69
2370 2661 2.359900 CTCCATACCACAGCCTTGAAC 58.640 52.381 0.00 0.00 0.00 3.18
2371 2662 1.985159 TCCATACCACAGCCTTGAACT 59.015 47.619 0.00 0.00 0.00 3.01
2372 2663 2.086869 CCATACCACAGCCTTGAACTG 58.913 52.381 0.00 0.00 41.08 3.16
2373 2664 2.290260 CCATACCACAGCCTTGAACTGA 60.290 50.000 0.00 0.00 38.55 3.41
2374 2665 3.411446 CATACCACAGCCTTGAACTGAA 58.589 45.455 0.00 0.00 38.55 3.02
2375 2666 1.972872 ACCACAGCCTTGAACTGAAG 58.027 50.000 0.00 0.00 38.55 3.02
2376 2667 1.242076 CCACAGCCTTGAACTGAAGG 58.758 55.000 0.00 0.00 44.86 3.46
2380 2671 3.987404 CCTTGAACTGAAGGCCCG 58.013 61.111 0.00 0.00 36.31 6.13
2381 2672 2.335712 CCTTGAACTGAAGGCCCGC 61.336 63.158 0.00 0.00 36.31 6.13
2382 2673 2.282180 TTGAACTGAAGGCCCGCC 60.282 61.111 0.00 0.00 0.00 6.13
2383 2674 3.860930 TTGAACTGAAGGCCCGCCC 62.861 63.158 0.00 0.00 36.58 6.13
2471 2762 6.395426 TTTCTTTCACATGCAACATCTCTT 57.605 33.333 0.00 0.00 0.00 2.85
2472 2763 5.618056 TCTTTCACATGCAACATCTCTTC 57.382 39.130 0.00 0.00 0.00 2.87
2473 2764 5.065235 TCTTTCACATGCAACATCTCTTCA 58.935 37.500 0.00 0.00 0.00 3.02
2502 2807 4.979039 ACCTCCACTATCTCTCCTTCTCTA 59.021 45.833 0.00 0.00 0.00 2.43
2505 2810 7.464265 ACCTCCACTATCTCTCCTTCTCTATAT 59.536 40.741 0.00 0.00 0.00 0.86
2573 2879 2.228822 CACAGTTTGGTTAGTCCATGGC 59.771 50.000 6.96 2.00 46.60 4.40
2680 2987 2.805671 TCCTGTAGTTTTCATGTGCACG 59.194 45.455 13.13 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
473 499 4.782019 TCAAACGAGGATTGGGATTTTG 57.218 40.909 0.00 0.00 0.00 2.44
535 570 0.832135 AGCAACTCAAGGACCCTCGA 60.832 55.000 0.00 0.00 0.00 4.04
654 690 9.562408 TCAGTAGAAGAAGACGACTATTATGAT 57.438 33.333 0.00 0.00 0.00 2.45
655 691 8.959705 TCAGTAGAAGAAGACGACTATTATGA 57.040 34.615 0.00 0.00 0.00 2.15
662 698 8.293867 GCATATAATCAGTAGAAGAAGACGACT 58.706 37.037 0.00 0.00 0.00 4.18
663 699 7.539366 GGCATATAATCAGTAGAAGAAGACGAC 59.461 40.741 0.00 0.00 0.00 4.34
664 700 7.230712 TGGCATATAATCAGTAGAAGAAGACGA 59.769 37.037 0.00 0.00 0.00 4.20
665 701 7.327275 GTGGCATATAATCAGTAGAAGAAGACG 59.673 40.741 0.00 0.00 0.00 4.18
666 702 8.364142 AGTGGCATATAATCAGTAGAAGAAGAC 58.636 37.037 0.00 0.00 0.00 3.01
667 703 8.484214 AGTGGCATATAATCAGTAGAAGAAGA 57.516 34.615 0.00 0.00 0.00 2.87
668 704 8.363390 TGAGTGGCATATAATCAGTAGAAGAAG 58.637 37.037 0.00 0.00 0.00 2.85
669 705 8.144478 GTGAGTGGCATATAATCAGTAGAAGAA 58.856 37.037 0.00 0.00 0.00 2.52
670 706 7.507277 AGTGAGTGGCATATAATCAGTAGAAGA 59.493 37.037 0.00 0.00 0.00 2.87
671 707 7.598118 CAGTGAGTGGCATATAATCAGTAGAAG 59.402 40.741 0.00 0.00 0.00 2.85
672 708 7.436933 CAGTGAGTGGCATATAATCAGTAGAA 58.563 38.462 0.00 0.00 0.00 2.10
673 709 6.517362 GCAGTGAGTGGCATATAATCAGTAGA 60.517 42.308 0.00 0.00 0.00 2.59
674 710 5.636965 GCAGTGAGTGGCATATAATCAGTAG 59.363 44.000 0.00 0.00 0.00 2.57
675 711 5.070313 TGCAGTGAGTGGCATATAATCAGTA 59.930 40.000 0.00 0.00 34.58 2.74
676 712 4.141642 TGCAGTGAGTGGCATATAATCAGT 60.142 41.667 0.00 0.00 34.58 3.41
677 713 4.383173 TGCAGTGAGTGGCATATAATCAG 58.617 43.478 0.00 0.00 34.58 2.90
678 714 4.420522 TGCAGTGAGTGGCATATAATCA 57.579 40.909 0.00 0.00 34.58 2.57
686 722 3.419943 TCAATTTATGCAGTGAGTGGCA 58.580 40.909 0.00 0.00 45.23 4.92
687 723 4.439305 TTCAATTTATGCAGTGAGTGGC 57.561 40.909 0.00 0.00 0.00 5.01
688 724 7.092079 TCAATTTCAATTTATGCAGTGAGTGG 58.908 34.615 0.00 0.00 0.00 4.00
689 725 7.811236 ACTCAATTTCAATTTATGCAGTGAGTG 59.189 33.333 0.00 0.00 41.64 3.51
690 726 7.889469 ACTCAATTTCAATTTATGCAGTGAGT 58.111 30.769 0.00 0.00 40.00 3.41
691 727 9.844790 TTACTCAATTTCAATTTATGCAGTGAG 57.155 29.630 0.00 0.00 38.79 3.51
718 754 9.480861 TCAGAAGATCTTTCCAGATTCTAGTAA 57.519 33.333 9.87 0.00 40.14 2.24
719 755 9.653516 ATCAGAAGATCTTTCCAGATTCTAGTA 57.346 33.333 9.87 0.00 40.14 1.82
720 756 7.969690 TCAGAAGATCTTTCCAGATTCTAGT 57.030 36.000 9.87 0.00 40.14 2.57
727 763 8.428063 GGAGATTTATCAGAAGATCTTTCCAGA 58.572 37.037 9.87 6.04 35.67 3.86
728 764 8.209584 TGGAGATTTATCAGAAGATCTTTCCAG 58.790 37.037 9.87 0.56 35.67 3.86
729 765 8.094284 TGGAGATTTATCAGAAGATCTTTCCA 57.906 34.615 9.87 11.26 35.67 3.53
730 766 9.571816 AATGGAGATTTATCAGAAGATCTTTCC 57.428 33.333 9.87 8.78 35.67 3.13
732 768 9.352191 CCAATGGAGATTTATCAGAAGATCTTT 57.648 33.333 9.87 0.00 35.67 2.52
733 769 8.501070 ACCAATGGAGATTTATCAGAAGATCTT 58.499 33.333 7.95 7.95 35.67 2.40
734 770 8.043429 ACCAATGGAGATTTATCAGAAGATCT 57.957 34.615 6.16 0.00 35.67 2.75
735 771 7.935755 TGACCAATGGAGATTTATCAGAAGATC 59.064 37.037 6.16 0.00 35.67 2.75
736 772 7.809238 TGACCAATGGAGATTTATCAGAAGAT 58.191 34.615 6.16 0.00 38.29 2.40
737 773 7.199167 TGACCAATGGAGATTTATCAGAAGA 57.801 36.000 6.16 0.00 0.00 2.87
738 774 8.461249 AATGACCAATGGAGATTTATCAGAAG 57.539 34.615 6.16 0.00 0.00 2.85
739 775 8.827832 AAATGACCAATGGAGATTTATCAGAA 57.172 30.769 6.16 0.00 0.00 3.02
740 776 8.054572 TGAAATGACCAATGGAGATTTATCAGA 58.945 33.333 6.16 0.00 0.00 3.27
741 777 8.229253 TGAAATGACCAATGGAGATTTATCAG 57.771 34.615 6.16 0.00 0.00 2.90
742 778 8.771521 ATGAAATGACCAATGGAGATTTATCA 57.228 30.769 6.16 5.71 0.00 2.15
746 782 7.975616 CGTAAATGAAATGACCAATGGAGATTT 59.024 33.333 6.16 9.49 0.00 2.17
747 783 7.483307 CGTAAATGAAATGACCAATGGAGATT 58.517 34.615 6.16 0.12 0.00 2.40
748 784 6.460123 GCGTAAATGAAATGACCAATGGAGAT 60.460 38.462 6.16 0.00 0.00 2.75
749 785 5.163663 GCGTAAATGAAATGACCAATGGAGA 60.164 40.000 6.16 0.00 0.00 3.71
750 786 5.036737 GCGTAAATGAAATGACCAATGGAG 58.963 41.667 6.16 0.00 0.00 3.86
751 787 4.438065 CGCGTAAATGAAATGACCAATGGA 60.438 41.667 6.16 0.00 0.00 3.41
752 788 3.790820 CGCGTAAATGAAATGACCAATGG 59.209 43.478 0.00 0.00 0.00 3.16
753 789 4.262743 CACGCGTAAATGAAATGACCAATG 59.737 41.667 13.44 0.00 0.00 2.82
754 790 4.155099 TCACGCGTAAATGAAATGACCAAT 59.845 37.500 13.44 0.00 0.00 3.16
755 791 3.498777 TCACGCGTAAATGAAATGACCAA 59.501 39.130 13.44 0.00 0.00 3.67
756 792 3.067833 TCACGCGTAAATGAAATGACCA 58.932 40.909 13.44 0.00 0.00 4.02
757 793 3.733024 TCACGCGTAAATGAAATGACC 57.267 42.857 13.44 0.00 0.00 4.02
758 794 4.892655 TCATCACGCGTAAATGAAATGAC 58.107 39.130 25.56 0.00 0.00 3.06
759 795 5.538067 TTCATCACGCGTAAATGAAATGA 57.462 34.783 31.08 19.97 36.69 2.57
760 796 5.003402 GGTTTCATCACGCGTAAATGAAATG 59.997 40.000 37.39 23.09 45.76 2.32
761 797 5.092781 GGTTTCATCACGCGTAAATGAAAT 58.907 37.500 37.39 16.10 45.76 2.17
762 798 4.023963 TGGTTTCATCACGCGTAAATGAAA 60.024 37.500 34.70 34.70 43.48 2.69
763 799 3.498777 TGGTTTCATCACGCGTAAATGAA 59.501 39.130 30.23 30.23 37.57 2.57
764 800 3.067833 TGGTTTCATCACGCGTAAATGA 58.932 40.909 24.55 24.55 0.00 2.57
765 801 3.160545 GTGGTTTCATCACGCGTAAATG 58.839 45.455 21.56 21.56 0.00 2.32
766 802 2.809119 TGTGGTTTCATCACGCGTAAAT 59.191 40.909 13.44 5.86 37.91 1.40
767 803 2.210961 TGTGGTTTCATCACGCGTAAA 58.789 42.857 13.44 6.05 37.91 2.01
768 804 1.867166 TGTGGTTTCATCACGCGTAA 58.133 45.000 13.44 0.00 37.91 3.18
769 805 1.527736 GTTGTGGTTTCATCACGCGTA 59.472 47.619 13.44 0.28 37.91 4.42
770 806 0.306533 GTTGTGGTTTCATCACGCGT 59.693 50.000 5.58 5.58 37.91 6.01
771 807 0.385473 GGTTGTGGTTTCATCACGCG 60.385 55.000 3.53 3.53 37.91 6.01
772 808 0.665835 TGGTTGTGGTTTCATCACGC 59.334 50.000 0.00 0.00 37.91 5.34
773 809 4.963276 ATATGGTTGTGGTTTCATCACG 57.037 40.909 0.00 0.00 37.91 4.35
774 810 9.651913 AAAATAATATGGTTGTGGTTTCATCAC 57.348 29.630 0.00 0.00 35.82 3.06
775 811 9.868277 GAAAATAATATGGTTGTGGTTTCATCA 57.132 29.630 0.00 0.00 0.00 3.07
796 832 9.020731 ACGGTCCAGATTTAAAACATAGAAAAT 57.979 29.630 0.00 0.00 0.00 1.82
797 833 8.398878 ACGGTCCAGATTTAAAACATAGAAAA 57.601 30.769 0.00 0.00 0.00 2.29
798 834 7.989416 ACGGTCCAGATTTAAAACATAGAAA 57.011 32.000 0.00 0.00 0.00 2.52
799 835 7.989416 AACGGTCCAGATTTAAAACATAGAA 57.011 32.000 0.00 0.00 0.00 2.10
800 836 7.574217 GCAAACGGTCCAGATTTAAAACATAGA 60.574 37.037 0.00 0.00 0.00 1.98
801 837 6.526674 GCAAACGGTCCAGATTTAAAACATAG 59.473 38.462 0.00 0.00 0.00 2.23
802 838 6.207810 AGCAAACGGTCCAGATTTAAAACATA 59.792 34.615 0.00 0.00 0.00 2.29
803 839 5.010617 AGCAAACGGTCCAGATTTAAAACAT 59.989 36.000 0.00 0.00 0.00 2.71
804 840 4.339814 AGCAAACGGTCCAGATTTAAAACA 59.660 37.500 0.00 0.00 0.00 2.83
805 841 4.866921 AGCAAACGGTCCAGATTTAAAAC 58.133 39.130 0.00 0.00 0.00 2.43
806 842 5.523438 AAGCAAACGGTCCAGATTTAAAA 57.477 34.783 0.00 0.00 0.00 1.52
807 843 5.523438 AAAGCAAACGGTCCAGATTTAAA 57.477 34.783 0.00 0.00 0.00 1.52
808 844 6.827586 ATAAAGCAAACGGTCCAGATTTAA 57.172 33.333 0.00 0.00 0.00 1.52
809 845 8.402472 CAATATAAAGCAAACGGTCCAGATTTA 58.598 33.333 0.00 0.00 0.00 1.40
810 846 7.257722 CAATATAAAGCAAACGGTCCAGATTT 58.742 34.615 0.00 0.00 0.00 2.17
811 847 6.680378 GCAATATAAAGCAAACGGTCCAGATT 60.680 38.462 0.00 0.00 0.00 2.40
812 848 5.221048 GCAATATAAAGCAAACGGTCCAGAT 60.221 40.000 0.00 0.00 0.00 2.90
813 849 4.095782 GCAATATAAAGCAAACGGTCCAGA 59.904 41.667 0.00 0.00 0.00 3.86
814 850 4.096382 AGCAATATAAAGCAAACGGTCCAG 59.904 41.667 3.07 0.00 0.00 3.86
815 851 4.013728 AGCAATATAAAGCAAACGGTCCA 58.986 39.130 3.07 0.00 0.00 4.02
816 852 4.632538 AGCAATATAAAGCAAACGGTCC 57.367 40.909 3.07 0.00 0.00 4.46
817 853 7.539366 TGTTAAAGCAATATAAAGCAAACGGTC 59.461 33.333 3.07 0.00 0.00 4.79
818 854 7.371936 TGTTAAAGCAATATAAAGCAAACGGT 58.628 30.769 3.07 0.00 0.00 4.83
819 855 7.804614 TGTTAAAGCAATATAAAGCAAACGG 57.195 32.000 3.07 0.00 0.00 4.44
887 923 6.090763 GGCACAACAATTAAAATGGCTACTTC 59.909 38.462 0.00 0.00 0.00 3.01
888 924 5.931724 GGCACAACAATTAAAATGGCTACTT 59.068 36.000 0.00 0.00 0.00 2.24
976 1019 0.662619 GTGGATGGTGTGTGTGTGTG 59.337 55.000 0.00 0.00 0.00 3.82
977 1020 0.465460 GGTGGATGGTGTGTGTGTGT 60.465 55.000 0.00 0.00 0.00 3.72
978 1021 0.179020 AGGTGGATGGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
979 1022 1.071699 GTAGGTGGATGGTGTGTGTGT 59.928 52.381 0.00 0.00 0.00 3.72
980 1023 1.071542 TGTAGGTGGATGGTGTGTGTG 59.928 52.381 0.00 0.00 0.00 3.82
981 1024 1.347707 CTGTAGGTGGATGGTGTGTGT 59.652 52.381 0.00 0.00 0.00 3.72
982 1025 1.347707 ACTGTAGGTGGATGGTGTGTG 59.652 52.381 0.00 0.00 0.00 3.82
983 1026 1.729586 ACTGTAGGTGGATGGTGTGT 58.270 50.000 0.00 0.00 0.00 3.72
984 1027 2.813754 CAAACTGTAGGTGGATGGTGTG 59.186 50.000 0.00 0.00 0.00 3.82
985 1028 2.708861 TCAAACTGTAGGTGGATGGTGT 59.291 45.455 0.00 0.00 0.00 4.16
986 1029 3.338249 CTCAAACTGTAGGTGGATGGTG 58.662 50.000 0.00 0.00 0.00 4.17
987 1030 2.290323 GCTCAAACTGTAGGTGGATGGT 60.290 50.000 0.00 0.00 0.00 3.55
1030 1081 3.187842 GCTACGATTTTCTTGGGTTTCGT 59.812 43.478 0.00 0.00 41.96 3.85
1031 1082 3.187637 TGCTACGATTTTCTTGGGTTTCG 59.812 43.478 0.00 0.00 0.00 3.46
1032 1083 4.723248 CTGCTACGATTTTCTTGGGTTTC 58.277 43.478 0.00 0.00 0.00 2.78
1115 1166 2.042464 TCTAGAATGGAAGCGCTGGAT 58.958 47.619 12.58 0.00 0.00 3.41
1308 1359 1.555533 GATCTTCGGGTCCTTGTCCTT 59.444 52.381 0.00 0.00 0.00 3.36
1341 1392 4.454504 GGAGTAAAAATGGTCGCAGAAGAA 59.545 41.667 0.00 0.00 39.69 2.52
1396 1447 3.563808 CACCTTGTTCGACCAGATGAAAA 59.436 43.478 0.00 0.00 0.00 2.29
1397 1448 3.138304 CACCTTGTTCGACCAGATGAAA 58.862 45.455 0.00 0.00 0.00 2.69
1399 1450 1.001974 CCACCTTGTTCGACCAGATGA 59.998 52.381 0.00 0.00 0.00 2.92
1551 1602 2.433664 CCGCTCCGTTACACCCAC 60.434 66.667 0.00 0.00 0.00 4.61
1591 1655 2.086869 CTTTTCTGGGCACGTGATGAT 58.913 47.619 22.23 0.00 0.00 2.45
1592 1656 1.071542 TCTTTTCTGGGCACGTGATGA 59.928 47.619 22.23 7.90 0.00 2.92
1593 1657 1.466167 CTCTTTTCTGGGCACGTGATG 59.534 52.381 22.23 5.46 0.00 3.07
1594 1658 1.072331 ACTCTTTTCTGGGCACGTGAT 59.928 47.619 22.23 0.00 0.00 3.06
1595 1659 0.468226 ACTCTTTTCTGGGCACGTGA 59.532 50.000 22.23 0.00 0.00 4.35
1596 1660 1.002468 CAACTCTTTTCTGGGCACGTG 60.002 52.381 12.28 12.28 0.00 4.49
1597 1661 1.308998 CAACTCTTTTCTGGGCACGT 58.691 50.000 0.00 0.00 0.00 4.49
1598 1662 0.040067 GCAACTCTTTTCTGGGCACG 60.040 55.000 0.00 0.00 0.00 5.34
1599 1663 1.032014 TGCAACTCTTTTCTGGGCAC 58.968 50.000 0.00 0.00 0.00 5.01
1600 1664 1.774110 TTGCAACTCTTTTCTGGGCA 58.226 45.000 0.00 0.00 0.00 5.36
1601 1665 4.725790 ATATTGCAACTCTTTTCTGGGC 57.274 40.909 0.00 0.00 0.00 5.36
1602 1666 7.967890 AAAAATATTGCAACTCTTTTCTGGG 57.032 32.000 0.00 0.00 0.00 4.45
1654 1877 7.559335 AGAGGCCTCCTTTTTAAAAATTCAT 57.441 32.000 29.54 0.79 31.76 2.57
1656 1879 7.981789 CCATAGAGGCCTCCTTTTTAAAAATTC 59.018 37.037 29.54 0.00 31.76 2.17
1657 1880 7.678171 TCCATAGAGGCCTCCTTTTTAAAAATT 59.322 33.333 29.54 8.34 37.29 1.82
1658 1881 7.189087 TCCATAGAGGCCTCCTTTTTAAAAAT 58.811 34.615 29.54 8.56 37.29 1.82
1661 1884 5.755849 CTCCATAGAGGCCTCCTTTTTAAA 58.244 41.667 29.54 6.79 36.39 1.52
1663 1886 3.136626 GCTCCATAGAGGCCTCCTTTTTA 59.863 47.826 29.54 14.94 40.79 1.52
1664 1887 2.092158 GCTCCATAGAGGCCTCCTTTTT 60.092 50.000 29.54 13.02 40.79 1.94
1665 1888 1.492599 GCTCCATAGAGGCCTCCTTTT 59.507 52.381 29.54 13.43 40.79 2.27
1669 1892 1.531739 CGAGCTCCATAGAGGCCTCC 61.532 65.000 29.54 11.95 40.79 4.30
1672 1895 3.055580 CCGAGCTCCATAGAGGCC 58.944 66.667 8.47 0.00 40.79 5.19
1673 1896 2.341911 GCCGAGCTCCATAGAGGC 59.658 66.667 8.47 10.27 40.79 4.70
1674 1897 1.531739 GAGGCCGAGCTCCATAGAGG 61.532 65.000 8.47 3.22 40.79 3.69
1676 1899 1.531840 GGAGGCCGAGCTCCATAGA 60.532 63.158 8.47 0.00 39.45 1.98
1677 1900 1.834378 TGGAGGCCGAGCTCCATAG 60.834 63.158 8.47 0.00 44.02 2.23
1678 1901 2.282106 TGGAGGCCGAGCTCCATA 59.718 61.111 8.47 0.00 44.02 2.74
1680 1903 2.469465 CTTTTGGAGGCCGAGCTCCA 62.469 60.000 8.47 7.35 46.84 3.86
1681 1904 1.746991 CTTTTGGAGGCCGAGCTCC 60.747 63.158 8.47 0.00 40.05 4.70
1682 1905 2.402572 GCTTTTGGAGGCCGAGCTC 61.403 63.158 2.73 2.73 0.00 4.09
1683 1906 2.360475 GCTTTTGGAGGCCGAGCT 60.360 61.111 0.00 0.00 0.00 4.09
1684 1907 2.672996 TGCTTTTGGAGGCCGAGC 60.673 61.111 0.00 2.19 0.00 5.03
1685 1908 0.036388 TACTGCTTTTGGAGGCCGAG 60.036 55.000 0.00 0.00 42.59 4.63
1686 1909 0.618458 ATACTGCTTTTGGAGGCCGA 59.382 50.000 0.00 0.00 42.59 5.54
1687 1910 1.463674 AATACTGCTTTTGGAGGCCG 58.536 50.000 0.00 0.00 42.59 6.13
1688 1911 3.236632 CAAATACTGCTTTTGGAGGCC 57.763 47.619 0.00 0.00 42.59 5.19
1694 1917 2.094026 GCTCCCCCAAATACTGCTTTTG 60.094 50.000 0.00 0.00 34.55 2.44
1695 1918 2.179427 GCTCCCCCAAATACTGCTTTT 58.821 47.619 0.00 0.00 0.00 2.27
1696 1919 1.077005 TGCTCCCCCAAATACTGCTTT 59.923 47.619 0.00 0.00 0.00 3.51
1697 1920 0.704076 TGCTCCCCCAAATACTGCTT 59.296 50.000 0.00 0.00 0.00 3.91
1698 1921 0.034089 GTGCTCCCCCAAATACTGCT 60.034 55.000 0.00 0.00 0.00 4.24
1699 1922 0.034089 AGTGCTCCCCCAAATACTGC 60.034 55.000 0.00 0.00 0.00 4.40
1700 1923 1.561542 AGAGTGCTCCCCCAAATACTG 59.438 52.381 0.00 0.00 0.00 2.74
1701 1924 1.840635 GAGAGTGCTCCCCCAAATACT 59.159 52.381 0.00 0.00 35.01 2.12
1702 1925 1.840635 AGAGAGTGCTCCCCCAAATAC 59.159 52.381 0.00 0.00 42.30 1.89
1703 1926 2.270434 AGAGAGTGCTCCCCCAAATA 57.730 50.000 0.00 0.00 42.30 1.40
1704 1927 2.270434 TAGAGAGTGCTCCCCCAAAT 57.730 50.000 0.00 0.00 42.30 2.32
1705 1928 2.270434 ATAGAGAGTGCTCCCCCAAA 57.730 50.000 0.00 0.00 42.30 3.28
1706 1929 2.023404 TGTATAGAGAGTGCTCCCCCAA 60.023 50.000 0.00 0.00 42.30 4.12
1707 1930 1.573857 TGTATAGAGAGTGCTCCCCCA 59.426 52.381 0.00 0.00 42.30 4.96
1708 1931 2.383442 TGTATAGAGAGTGCTCCCCC 57.617 55.000 0.00 0.00 42.30 5.40
1733 1956 3.194755 ACGTATTGCATAGTCCAGTGACA 59.805 43.478 0.00 0.00 44.33 3.58
1734 1957 3.551890 CACGTATTGCATAGTCCAGTGAC 59.448 47.826 0.00 0.00 42.09 3.67
1743 1967 1.594518 GCGCCAACACGTATTGCATAG 60.595 52.381 0.00 0.00 34.88 2.23
1808 2032 1.712018 GGGAAAGGTATCGCCGTTGC 61.712 60.000 0.00 0.00 43.93 4.17
1809 2033 0.107848 AGGGAAAGGTATCGCCGTTG 60.108 55.000 0.00 0.00 43.70 4.10
1810 2034 0.177373 GAGGGAAAGGTATCGCCGTT 59.823 55.000 0.00 0.00 43.70 4.44
1812 2036 1.269998 CTAGAGGGAAAGGTATCGCCG 59.730 57.143 0.00 0.00 43.70 6.46
1815 2039 5.986501 ATTAGCTAGAGGGAAAGGTATCG 57.013 43.478 0.00 0.00 0.00 2.92
1816 2040 8.315482 CCTTAATTAGCTAGAGGGAAAGGTATC 58.685 40.741 0.00 0.00 0.00 2.24
1830 2054 7.707467 AATCTCCTTTCCCCTTAATTAGCTA 57.293 36.000 0.00 0.00 0.00 3.32
1833 2057 7.173390 CGCTTAATCTCCTTTCCCCTTAATTAG 59.827 40.741 0.00 0.00 0.00 1.73
1834 2058 6.996282 CGCTTAATCTCCTTTCCCCTTAATTA 59.004 38.462 0.00 0.00 0.00 1.40
1835 2059 5.828328 CGCTTAATCTCCTTTCCCCTTAATT 59.172 40.000 0.00 0.00 0.00 1.40
1836 2060 5.377478 CGCTTAATCTCCTTTCCCCTTAAT 58.623 41.667 0.00 0.00 0.00 1.40
1837 2061 4.384868 CCGCTTAATCTCCTTTCCCCTTAA 60.385 45.833 0.00 0.00 0.00 1.85
1838 2062 3.135895 CCGCTTAATCTCCTTTCCCCTTA 59.864 47.826 0.00 0.00 0.00 2.69
1839 2063 2.092375 CCGCTTAATCTCCTTTCCCCTT 60.092 50.000 0.00 0.00 0.00 3.95
1840 2064 1.490910 CCGCTTAATCTCCTTTCCCCT 59.509 52.381 0.00 0.00 0.00 4.79
1841 2065 1.968704 CCGCTTAATCTCCTTTCCCC 58.031 55.000 0.00 0.00 0.00 4.81
1842 2066 1.309950 GCCGCTTAATCTCCTTTCCC 58.690 55.000 0.00 0.00 0.00 3.97
1845 2069 3.350219 TTCTGCCGCTTAATCTCCTTT 57.650 42.857 0.00 0.00 0.00 3.11
1846 2070 3.350219 TTTCTGCCGCTTAATCTCCTT 57.650 42.857 0.00 0.00 0.00 3.36
1847 2071 3.567478 ATTTCTGCCGCTTAATCTCCT 57.433 42.857 0.00 0.00 0.00 3.69
1848 2072 5.948992 AATATTTCTGCCGCTTAATCTCC 57.051 39.130 0.00 0.00 0.00 3.71
1850 2074 5.979517 GCAAAATATTTCTGCCGCTTAATCT 59.020 36.000 17.45 0.00 0.00 2.40
1851 2075 5.175673 GGCAAAATATTTCTGCCGCTTAATC 59.824 40.000 25.18 10.64 45.72 1.75
1853 2077 4.429108 GGCAAAATATTTCTGCCGCTTAA 58.571 39.130 25.18 0.00 45.72 1.85
1854 2078 4.040445 GGCAAAATATTTCTGCCGCTTA 57.960 40.909 25.18 0.00 45.72 3.09
1856 2080 2.584492 GGCAAAATATTTCTGCCGCT 57.416 45.000 25.18 0.94 45.72 5.52
1874 2123 0.251297 TGTGTTGCCTTCATCCCTGG 60.251 55.000 0.00 0.00 0.00 4.45
1875 2124 0.883833 GTGTGTTGCCTTCATCCCTG 59.116 55.000 0.00 0.00 0.00 4.45
1879 2128 1.925946 GCGTTGTGTGTTGCCTTCATC 60.926 52.381 0.00 0.00 0.00 2.92
1880 2129 0.030638 GCGTTGTGTGTTGCCTTCAT 59.969 50.000 0.00 0.00 0.00 2.57
1881 2130 1.029408 AGCGTTGTGTGTTGCCTTCA 61.029 50.000 0.00 0.00 0.00 3.02
1905 2154 1.971695 GGGCCCGGTTTCTCAACAG 60.972 63.158 5.69 0.00 34.15 3.16
1911 2160 2.204029 TAGGTGGGCCCGGTTTCT 60.204 61.111 19.37 11.99 38.74 2.52
1950 2199 0.394565 GCTAGGAGGTGTGCCATAGG 59.605 60.000 0.00 0.00 37.19 2.57
1951 2200 0.394565 GGCTAGGAGGTGTGCCATAG 59.605 60.000 0.00 0.00 44.34 2.23
1952 2201 1.054406 GGGCTAGGAGGTGTGCCATA 61.054 60.000 5.21 0.00 46.53 2.74
1953 2202 2.378634 GGGCTAGGAGGTGTGCCAT 61.379 63.158 5.21 0.00 46.53 4.40
1954 2203 3.009115 GGGCTAGGAGGTGTGCCA 61.009 66.667 5.21 0.00 46.53 4.92
1955 2204 2.891307 TAGGGGCTAGGAGGTGTGCC 62.891 65.000 0.00 0.00 44.22 5.01
1956 2205 1.382695 TAGGGGCTAGGAGGTGTGC 60.383 63.158 0.00 0.00 0.00 4.57
1957 2206 1.049289 GGTAGGGGCTAGGAGGTGTG 61.049 65.000 0.00 0.00 0.00 3.82
1958 2207 1.313822 GGTAGGGGCTAGGAGGTGT 59.686 63.158 0.00 0.00 0.00 4.16
1959 2208 0.104934 ATGGTAGGGGCTAGGAGGTG 60.105 60.000 0.00 0.00 0.00 4.00
1960 2209 0.648301 AATGGTAGGGGCTAGGAGGT 59.352 55.000 0.00 0.00 0.00 3.85
1961 2210 1.353091 GAATGGTAGGGGCTAGGAGG 58.647 60.000 0.00 0.00 0.00 4.30
1962 2211 1.353091 GGAATGGTAGGGGCTAGGAG 58.647 60.000 0.00 0.00 0.00 3.69
1963 2212 0.471211 CGGAATGGTAGGGGCTAGGA 60.471 60.000 0.00 0.00 0.00 2.94
1964 2213 2.058675 CGGAATGGTAGGGGCTAGG 58.941 63.158 0.00 0.00 0.00 3.02
1965 2214 1.371558 GCGGAATGGTAGGGGCTAG 59.628 63.158 0.00 0.00 0.00 3.42
1966 2215 1.383386 TGCGGAATGGTAGGGGCTA 60.383 57.895 0.00 0.00 0.00 3.93
1967 2216 2.690881 TGCGGAATGGTAGGGGCT 60.691 61.111 0.00 0.00 0.00 5.19
1968 2217 2.516225 GTGCGGAATGGTAGGGGC 60.516 66.667 0.00 0.00 0.00 5.80
1969 2218 0.034477 AAAGTGCGGAATGGTAGGGG 60.034 55.000 0.00 0.00 0.00 4.79
1970 2219 2.702592 TAAAGTGCGGAATGGTAGGG 57.297 50.000 0.00 0.00 0.00 3.53
1971 2220 3.541632 ACATAAAGTGCGGAATGGTAGG 58.458 45.455 0.00 0.00 0.00 3.18
1972 2221 6.260050 ACATAACATAAAGTGCGGAATGGTAG 59.740 38.462 0.00 0.00 0.00 3.18
1973 2222 6.037720 CACATAACATAAAGTGCGGAATGGTA 59.962 38.462 0.00 0.00 0.00 3.25
1974 2223 4.947388 ACATAACATAAAGTGCGGAATGGT 59.053 37.500 0.00 0.00 0.00 3.55
1975 2224 5.273170 CACATAACATAAAGTGCGGAATGG 58.727 41.667 0.00 0.00 0.00 3.16
1976 2225 5.273170 CCACATAACATAAAGTGCGGAATG 58.727 41.667 0.00 0.00 0.00 2.67
1977 2226 4.338118 CCCACATAACATAAAGTGCGGAAT 59.662 41.667 0.00 0.00 0.00 3.01
1978 2227 3.692101 CCCACATAACATAAAGTGCGGAA 59.308 43.478 0.00 0.00 0.00 4.30
1979 2228 3.275143 CCCACATAACATAAAGTGCGGA 58.725 45.455 0.00 0.00 0.00 5.54
1980 2229 3.013921 ACCCACATAACATAAAGTGCGG 58.986 45.455 0.00 0.00 0.00 5.69
1981 2230 4.873827 AGTACCCACATAACATAAAGTGCG 59.126 41.667 0.00 0.00 0.00 5.34
1982 2231 6.753107 AAGTACCCACATAACATAAAGTGC 57.247 37.500 0.00 0.00 0.00 4.40
2063 2312 1.004745 GGGCATATATGGTGAGGTGGG 59.995 57.143 14.51 0.00 0.00 4.61
2078 2327 2.681064 GTGGCATGTGTGGGGCAT 60.681 61.111 0.00 0.00 41.83 4.40
2157 2406 4.122776 GTTCTGCGTCATTACTCATCCAT 58.877 43.478 0.00 0.00 0.00 3.41
2170 2420 7.854839 AGACGAAGACGAATAGTTCTGCGTC 62.855 48.000 19.90 19.90 46.92 5.19
2316 2573 0.036765 GCATCCCAGTCCACGTGTTA 60.037 55.000 15.65 0.00 0.00 2.41
2351 2642 1.985159 AGTTCAAGGCTGTGGTATGGA 59.015 47.619 0.00 0.00 0.00 3.41
2352 2643 2.086869 CAGTTCAAGGCTGTGGTATGG 58.913 52.381 0.00 0.00 0.00 2.74
2353 2644 3.057969 TCAGTTCAAGGCTGTGGTATG 57.942 47.619 0.00 0.00 35.60 2.39
2354 2645 3.560025 CCTTCAGTTCAAGGCTGTGGTAT 60.560 47.826 0.00 0.00 36.72 2.73
2355 2646 2.224523 CCTTCAGTTCAAGGCTGTGGTA 60.225 50.000 0.00 0.00 36.72 3.25
2356 2647 1.477558 CCTTCAGTTCAAGGCTGTGGT 60.478 52.381 0.00 0.00 36.72 4.16
2357 2648 1.242076 CCTTCAGTTCAAGGCTGTGG 58.758 55.000 0.00 0.00 36.72 4.17
2363 2654 2.335712 GCGGGCCTTCAGTTCAAGG 61.336 63.158 0.84 0.00 45.35 3.61
2364 2655 2.335712 GGCGGGCCTTCAGTTCAAG 61.336 63.158 0.84 0.00 0.00 3.02
2365 2656 2.282180 GGCGGGCCTTCAGTTCAA 60.282 61.111 0.84 0.00 0.00 2.69
2366 2657 4.344865 GGGCGGGCCTTCAGTTCA 62.345 66.667 14.22 0.00 36.10 3.18
2367 2658 4.344865 TGGGCGGGCCTTCAGTTC 62.345 66.667 22.12 0.00 36.10 3.01
2368 2659 4.660938 GTGGGCGGGCCTTCAGTT 62.661 66.667 22.12 0.00 36.10 3.16
2377 2668 4.738998 TGCAAGATGGTGGGCGGG 62.739 66.667 0.00 0.00 0.00 6.13
2378 2669 3.443045 GTGCAAGATGGTGGGCGG 61.443 66.667 0.00 0.00 0.00 6.13
2379 2670 2.360350 AGTGCAAGATGGTGGGCG 60.360 61.111 0.00 0.00 0.00 6.13
2380 2671 2.998279 GCAGTGCAAGATGGTGGGC 61.998 63.158 11.09 0.00 0.00 5.36
2381 2672 1.604308 TGCAGTGCAAGATGGTGGG 60.604 57.895 17.26 0.00 34.76 4.61
2382 2673 0.892358 AGTGCAGTGCAAGATGGTGG 60.892 55.000 21.67 0.00 41.47 4.61
2383 2674 1.466167 GTAGTGCAGTGCAAGATGGTG 59.534 52.381 21.67 0.00 41.47 4.17
2471 2762 5.129485 GGAGAGATAGTGGAGGTCAAAATGA 59.871 44.000 0.00 0.00 0.00 2.57
2472 2763 5.130145 AGGAGAGATAGTGGAGGTCAAAATG 59.870 44.000 0.00 0.00 0.00 2.32
2473 2764 5.284582 AGGAGAGATAGTGGAGGTCAAAAT 58.715 41.667 0.00 0.00 0.00 1.82
2524 2829 5.940470 GGTCACTCAGATCTACCAATTTGTT 59.060 40.000 6.72 0.00 0.00 2.83
2573 2879 7.997803 AGAGAAAAGGAGAATAAGATGGGATTG 59.002 37.037 0.00 0.00 0.00 2.67
2680 2987 6.528072 GTCAGAATTAATACAGCCAACAAAGC 59.472 38.462 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.