Multiple sequence alignment - TraesCS6D01G054100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G054100 chr6D 100.000 5657 0 0 1 5657 25755695 25761351 0.000000e+00 10447
1 TraesCS6D01G054100 chr6D 87.643 526 52 6 218 735 372351230 372351750 2.920000e-167 599
2 TraesCS6D01G054100 chr6A 94.897 3214 92 19 1956 5126 23875060 23878244 0.000000e+00 4961
3 TraesCS6D01G054100 chr6A 87.453 805 53 25 788 1573 23874099 23874874 0.000000e+00 883
4 TraesCS6D01G054100 chr6A 94.934 533 26 1 5125 5657 23878326 23878857 0.000000e+00 833
5 TraesCS6D01G054100 chr6A 87.829 608 59 9 972 1573 77369551 77370149 0.000000e+00 699
6 TraesCS6D01G054100 chr6A 92.258 155 8 4 1592 1746 23874859 23875009 3.430000e-52 217
7 TraesCS6D01G054100 chr6A 87.640 178 17 3 5 177 102994950 102994773 9.610000e-48 202
8 TraesCS6D01G054100 chr6B 93.373 3063 106 30 1943 4957 41973224 41976237 0.000000e+00 4442
9 TraesCS6D01G054100 chr6B 87.603 605 59 10 975 1573 685496105 685495511 0.000000e+00 688
10 TraesCS6D01G054100 chr6B 95.187 374 16 2 4991 5363 41976229 41976601 1.760000e-164 590
11 TraesCS6D01G054100 chr6B 96.279 215 7 1 5443 5657 41976597 41976810 9.020000e-93 351
12 TraesCS6D01G054100 chr6B 87.640 178 11 5 1592 1768 685495526 685495359 4.470000e-46 196
13 TraesCS6D01G054100 chr6B 85.955 178 14 5 1592 1768 621064238 621064071 4.500000e-41 180
14 TraesCS6D01G054100 chr2D 85.586 777 66 18 2 737 579071406 579072177 0.000000e+00 773
15 TraesCS6D01G054100 chr2D 88.660 388 33 4 358 737 591120060 591119676 3.990000e-126 462
16 TraesCS6D01G054100 chr3D 85.199 777 68 23 2 737 548977647 548978417 0.000000e+00 754
17 TraesCS6D01G054100 chr3D 84.334 766 72 22 5 729 554034324 554035082 0.000000e+00 706
18 TraesCS6D01G054100 chr5B 89.309 608 50 9 972 1573 696003534 696004132 0.000000e+00 749
19 TraesCS6D01G054100 chr5B 87.640 178 11 5 1592 1768 696004117 696004284 4.470000e-46 196
20 TraesCS6D01G054100 chr1A 88.651 608 54 9 972 1573 10358895 10359493 0.000000e+00 726
21 TraesCS6D01G054100 chr1A 88.760 605 53 9 975 1573 201971607 201971012 0.000000e+00 726
22 TraesCS6D01G054100 chr1A 88.322 608 56 9 972 1573 503204004 503204602 0.000000e+00 715
23 TraesCS6D01G054100 chr1A 87.079 178 12 5 1592 1768 503204587 503204754 2.080000e-44 191
24 TraesCS6D01G054100 chr7A 88.595 605 54 9 975 1573 33683023 33682428 0.000000e+00 721
25 TraesCS6D01G054100 chr7A 88.077 520 47 7 226 737 52433753 52433241 2.250000e-168 603
26 TraesCS6D01G054100 chr3B 84.021 776 77 23 2 737 728290296 728291064 0.000000e+00 702
27 TraesCS6D01G054100 chr3B 87.030 532 58 5 217 740 136103957 136103429 1.760000e-164 590
28 TraesCS6D01G054100 chr3B 86.782 174 12 5 1592 1764 753322950 753323113 3.480000e-42 183
29 TraesCS6D01G054100 chr3B 84.302 172 12 5 4 173 136104203 136104045 2.730000e-33 154
30 TraesCS6D01G054100 chr2A 87.273 605 62 9 972 1570 664899258 664899853 0.000000e+00 676
31 TraesCS6D01G054100 chr7D 88.716 514 43 6 232 737 180761749 180762255 1.040000e-171 614
32 TraesCS6D01G054100 chr3A 87.335 529 55 7 217 737 579647889 579648413 3.770000e-166 595
33 TraesCS6D01G054100 chr1B 87.640 178 11 5 1592 1768 655554367 655554534 4.470000e-46 196
34 TraesCS6D01G054100 chr1B 86.517 178 13 6 1592 1768 626126869 626126702 9.680000e-43 185
35 TraesCS6D01G054100 chr7B 86.517 178 13 5 1592 1768 1918879 1919046 9.680000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G054100 chr6D 25755695 25761351 5656 False 10447.000000 10447 100.000000 1 5657 1 chr6D.!!$F1 5656
1 TraesCS6D01G054100 chr6D 372351230 372351750 520 False 599.000000 599 87.643000 218 735 1 chr6D.!!$F2 517
2 TraesCS6D01G054100 chr6A 23874099 23878857 4758 False 1723.500000 4961 92.385500 788 5657 4 chr6A.!!$F2 4869
3 TraesCS6D01G054100 chr6A 77369551 77370149 598 False 699.000000 699 87.829000 972 1573 1 chr6A.!!$F1 601
4 TraesCS6D01G054100 chr6B 41973224 41976810 3586 False 1794.333333 4442 94.946333 1943 5657 3 chr6B.!!$F1 3714
5 TraesCS6D01G054100 chr6B 685495359 685496105 746 True 442.000000 688 87.621500 975 1768 2 chr6B.!!$R2 793
6 TraesCS6D01G054100 chr2D 579071406 579072177 771 False 773.000000 773 85.586000 2 737 1 chr2D.!!$F1 735
7 TraesCS6D01G054100 chr3D 548977647 548978417 770 False 754.000000 754 85.199000 2 737 1 chr3D.!!$F1 735
8 TraesCS6D01G054100 chr3D 554034324 554035082 758 False 706.000000 706 84.334000 5 729 1 chr3D.!!$F2 724
9 TraesCS6D01G054100 chr5B 696003534 696004284 750 False 472.500000 749 88.474500 972 1768 2 chr5B.!!$F1 796
10 TraesCS6D01G054100 chr1A 10358895 10359493 598 False 726.000000 726 88.651000 972 1573 1 chr1A.!!$F1 601
11 TraesCS6D01G054100 chr1A 201971012 201971607 595 True 726.000000 726 88.760000 975 1573 1 chr1A.!!$R1 598
12 TraesCS6D01G054100 chr1A 503204004 503204754 750 False 453.000000 715 87.700500 972 1768 2 chr1A.!!$F2 796
13 TraesCS6D01G054100 chr7A 33682428 33683023 595 True 721.000000 721 88.595000 975 1573 1 chr7A.!!$R1 598
14 TraesCS6D01G054100 chr7A 52433241 52433753 512 True 603.000000 603 88.077000 226 737 1 chr7A.!!$R2 511
15 TraesCS6D01G054100 chr3B 728290296 728291064 768 False 702.000000 702 84.021000 2 737 1 chr3B.!!$F1 735
16 TraesCS6D01G054100 chr3B 136103429 136104203 774 True 372.000000 590 85.666000 4 740 2 chr3B.!!$R1 736
17 TraesCS6D01G054100 chr2A 664899258 664899853 595 False 676.000000 676 87.273000 972 1570 1 chr2A.!!$F1 598
18 TraesCS6D01G054100 chr7D 180761749 180762255 506 False 614.000000 614 88.716000 232 737 1 chr7D.!!$F1 505
19 TraesCS6D01G054100 chr3A 579647889 579648413 524 False 595.000000 595 87.335000 217 737 1 chr3A.!!$F1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
890 978 0.031314 CGATGGACGTGGAGGATCAG 59.969 60.0 0.00 0.0 35.05 2.90 F
1467 1568 0.322906 CTTCTTCTCCAACCCCTGCC 60.323 60.0 0.00 0.0 0.00 4.85 F
1833 1941 0.028642 AAGAGAGGGCCCCCATGTAT 60.029 55.0 21.43 0.0 38.92 2.29 F
2023 2131 0.308376 TCGTCGTCATCGTGTTGTCA 59.692 50.0 0.00 0.0 38.33 3.58 F
3743 3888 0.739462 TCTTGCGTGCCTAACCATCG 60.739 55.0 0.00 0.0 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 1922 0.028642 ATACATGGGGGCCCTCTCTT 60.029 55.000 25.88 9.12 36.94 2.85 R
2640 2760 3.006967 GGTGTCACCACATTAGACAGAGT 59.993 47.826 17.59 0.00 42.36 3.24 R
3725 3870 2.538345 AACGATGGTTAGGCACGCAAG 61.538 52.381 0.00 0.00 37.88 4.01 R
3859 4004 1.202758 CCAGTGGCCAAGACTACAACA 60.203 52.381 7.24 0.00 0.00 3.33 R
5470 5731 0.698818 ACAACACTTCCCCTCATCCC 59.301 55.000 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 38 7.611467 AGTTTTGAATATGGTGAAGCAGTATGA 59.389 33.333 0.00 0.00 39.69 2.15
48 51 8.668353 GTGAAGCAGTATGATCTTAAATGTTCA 58.332 33.333 0.00 5.56 39.69 3.18
51 54 6.818644 AGCAGTATGATCTTAAATGTTCACGT 59.181 34.615 0.00 0.00 39.69 4.49
57 60 4.718858 TCTTAAATGTTCACGTTGGTCG 57.281 40.909 0.00 0.00 46.00 4.79
73 76 0.321034 GTCGTTGGTAAGTGGGACCC 60.321 60.000 2.45 2.45 35.99 4.46
140 143 5.514279 GTGAGTTTGATCCTTCAACTTGTG 58.486 41.667 0.00 0.00 41.50 3.33
174 179 7.136772 GGATTTATATTCGTGCCTTACAAACC 58.863 38.462 0.00 0.00 0.00 3.27
178 183 0.470766 TCGTGCCTTACAAACCCAGT 59.529 50.000 0.00 0.00 0.00 4.00
206 232 1.331756 CCAGATGCGAACTATTGTGCC 59.668 52.381 0.00 0.00 0.00 5.01
224 297 1.341080 CCTCCCATGCACTTTTTGGT 58.659 50.000 2.73 0.00 0.00 3.67
230 303 6.031751 TCCCATGCACTTTTTGGTTATAAC 57.968 37.500 7.09 7.09 0.00 1.89
287 360 8.600668 AGAGAATATGCTGAATTGGCTCTAATA 58.399 33.333 0.00 0.00 0.00 0.98
295 368 8.752187 TGCTGAATTGGCTCTAATAAAAAGAAT 58.248 29.630 0.00 0.00 0.00 2.40
304 377 8.466798 GGCTCTAATAAAAAGAATTGTAGGCAA 58.533 33.333 0.00 0.00 39.16 4.52
305 378 9.855021 GCTCTAATAAAAAGAATTGTAGGCAAA 57.145 29.630 0.00 0.00 38.21 3.68
312 385 4.098914 AGAATTGTAGGCAAAGTGACCA 57.901 40.909 0.00 0.00 38.21 4.02
321 394 7.172342 TGTAGGCAAAGTGACCACTAAAATAT 58.828 34.615 2.78 0.00 41.58 1.28
351 424 7.366226 AGAGAATAGACCCTGATAAAGAAGGA 58.634 38.462 0.00 0.00 35.40 3.36
355 428 8.855804 AATAGACCCTGATAAAGAAGGAACTA 57.144 34.615 0.00 0.00 38.49 2.24
494 575 1.064166 CAAATGAGGAGGGAGCCACAT 60.064 52.381 0.00 0.00 40.33 3.21
495 576 0.842635 AATGAGGAGGGAGCCACATC 59.157 55.000 0.00 0.00 38.12 3.06
557 640 3.047280 GTTGGTCGTCGCCATGCA 61.047 61.111 8.83 0.00 38.48 3.96
574 660 0.321653 GCAGACTAACCCCACCACTG 60.322 60.000 0.00 0.00 0.00 3.66
597 683 0.674895 AGATCTCGCAGGCCAAACAC 60.675 55.000 5.01 0.00 0.00 3.32
623 709 2.297597 CGAGAGAAGACCACAACTCCTT 59.702 50.000 0.00 0.00 0.00 3.36
690 776 4.505922 CGTCAATTATCTCTCCTGTTGCTC 59.494 45.833 0.00 0.00 0.00 4.26
709 795 8.489489 TGTTGCTCCTCAAAAGAATATCTCTAT 58.511 33.333 0.00 0.00 36.26 1.98
711 797 7.675062 TGCTCCTCAAAAGAATATCTCTATCC 58.325 38.462 0.00 0.00 32.46 2.59
730 816 2.849142 CTTGCAACGCACGGGCATAC 62.849 60.000 11.77 0.00 38.71 2.39
772 858 5.712152 AAAATCAGAAAAATCGGCTCTGT 57.288 34.783 0.00 0.00 38.20 3.41
773 859 5.712152 AAATCAGAAAAATCGGCTCTGTT 57.288 34.783 0.00 0.00 38.20 3.16
774 860 5.712152 AATCAGAAAAATCGGCTCTGTTT 57.288 34.783 0.00 0.00 38.20 2.83
775 861 4.488126 TCAGAAAAATCGGCTCTGTTTG 57.512 40.909 0.00 0.00 38.20 2.93
776 862 3.882888 TCAGAAAAATCGGCTCTGTTTGT 59.117 39.130 0.00 0.00 38.20 2.83
777 863 3.976942 CAGAAAAATCGGCTCTGTTTGTG 59.023 43.478 0.00 0.00 33.39 3.33
778 864 3.882888 AGAAAAATCGGCTCTGTTTGTGA 59.117 39.130 0.00 0.00 0.00 3.58
779 865 4.338118 AGAAAAATCGGCTCTGTTTGTGAA 59.662 37.500 0.00 0.00 0.00 3.18
780 866 4.647424 AAAATCGGCTCTGTTTGTGAAA 57.353 36.364 0.00 0.00 0.00 2.69
781 867 3.904136 AATCGGCTCTGTTTGTGAAAG 57.096 42.857 0.00 0.00 0.00 2.62
782 868 2.613026 TCGGCTCTGTTTGTGAAAGA 57.387 45.000 0.00 0.00 0.00 2.52
783 869 2.912771 TCGGCTCTGTTTGTGAAAGAA 58.087 42.857 0.00 0.00 0.00 2.52
784 870 3.275143 TCGGCTCTGTTTGTGAAAGAAA 58.725 40.909 0.00 0.00 0.00 2.52
785 871 3.692101 TCGGCTCTGTTTGTGAAAGAAAA 59.308 39.130 0.00 0.00 27.72 2.29
786 872 4.037690 CGGCTCTGTTTGTGAAAGAAAAG 58.962 43.478 0.00 0.00 27.72 2.27
793 879 3.817709 TTGTGAAAGAAAAGGGCCAAG 57.182 42.857 6.18 0.00 0.00 3.61
795 881 3.904717 TGTGAAAGAAAAGGGCCAAGTA 58.095 40.909 6.18 0.00 0.00 2.24
796 882 3.634910 TGTGAAAGAAAAGGGCCAAGTAC 59.365 43.478 6.18 0.00 0.00 2.73
803 889 7.553504 AAGAAAAGGGCCAAGTACATTAATT 57.446 32.000 6.18 0.00 0.00 1.40
810 896 4.202050 GGCCAAGTACATTAATTGCAGGAG 60.202 45.833 0.00 0.00 32.82 3.69
812 898 5.125417 GCCAAGTACATTAATTGCAGGAGAA 59.875 40.000 0.00 0.00 32.82 2.87
818 904 9.247861 AGTACATTAATTGCAGGAGAAGAAATT 57.752 29.630 0.00 0.00 0.00 1.82
819 905 9.860898 GTACATTAATTGCAGGAGAAGAAATTT 57.139 29.630 0.00 0.00 0.00 1.82
821 907 9.428097 ACATTAATTGCAGGAGAAGAAATTTTC 57.572 29.630 0.66 0.66 0.00 2.29
822 908 8.876790 CATTAATTGCAGGAGAAGAAATTTTCC 58.123 33.333 5.52 0.00 0.00 3.13
823 909 4.503741 TTGCAGGAGAAGAAATTTTCCG 57.496 40.909 5.52 0.00 34.87 4.30
890 978 0.031314 CGATGGACGTGGAGGATCAG 59.969 60.000 0.00 0.00 35.05 2.90
968 1056 1.079266 CCACCAGAGCAGAGCAGAC 60.079 63.158 0.00 0.00 0.00 3.51
973 1061 2.125753 GAGCAGAGCAGACCACCG 60.126 66.667 0.00 0.00 0.00 4.94
978 1066 4.803426 GAGCAGACCACCGCCTCG 62.803 72.222 0.00 0.00 0.00 4.63
1284 1381 1.293924 TCGAGATCGAGTTCCCGTAC 58.706 55.000 0.00 0.00 44.22 3.67
1287 1384 1.653533 GATCGAGTTCCCGTACGCG 60.654 63.158 10.49 3.53 41.71 6.01
1288 1385 3.746409 ATCGAGTTCCCGTACGCGC 62.746 63.158 10.49 0.00 40.44 6.86
1289 1386 4.764336 CGAGTTCCCGTACGCGCA 62.764 66.667 10.49 0.00 34.76 6.09
1307 1404 1.107114 CACACTCCGCTCCACTATCT 58.893 55.000 0.00 0.00 0.00 1.98
1312 1409 3.570125 CACTCCGCTCCACTATCTCATTA 59.430 47.826 0.00 0.00 0.00 1.90
1340 1440 4.261322 CGTTCCAATCTAATGCAATCCCAG 60.261 45.833 0.00 0.00 0.00 4.45
1358 1458 2.025981 CCAGGATTGTTCTCACATCCCA 60.026 50.000 0.00 0.00 33.95 4.37
1362 1462 3.313526 GGATTGTTCTCACATCCCATTCG 59.686 47.826 0.00 0.00 31.06 3.34
1391 1491 1.276989 TCATGAACCTCCACGGGTAAC 59.723 52.381 0.00 0.00 38.87 2.50
1467 1568 0.322906 CTTCTTCTCCAACCCCTGCC 60.323 60.000 0.00 0.00 0.00 4.85
1490 1598 4.501915 CCAAATTTCCTGCTGTGACATGTT 60.502 41.667 0.00 0.00 0.00 2.71
1499 1607 3.627123 TGCTGTGACATGTTGCCATATAC 59.373 43.478 0.00 0.00 0.00 1.47
1500 1608 3.627123 GCTGTGACATGTTGCCATATACA 59.373 43.478 0.00 0.00 0.00 2.29
1501 1609 4.260907 GCTGTGACATGTTGCCATATACAG 60.261 45.833 0.00 6.47 37.88 2.74
1503 1611 5.983540 TGTGACATGTTGCCATATACAGTA 58.016 37.500 0.00 0.00 0.00 2.74
1504 1612 6.591001 TGTGACATGTTGCCATATACAGTAT 58.409 36.000 0.00 0.00 0.00 2.12
1505 1613 7.731054 TGTGACATGTTGCCATATACAGTATA 58.269 34.615 0.00 2.62 0.00 1.47
1506 1614 8.374743 TGTGACATGTTGCCATATACAGTATAT 58.625 33.333 7.21 7.21 0.00 0.86
1507 1615 9.219603 GTGACATGTTGCCATATACAGTATATT 57.780 33.333 10.03 0.00 0.00 1.28
1510 1618 9.667107 ACATGTTGCCATATACAGTATATTACC 57.333 33.333 10.03 3.52 0.00 2.85
1511 1619 9.665719 CATGTTGCCATATACAGTATATTACCA 57.334 33.333 10.03 5.69 0.00 3.25
1557 1665 9.531942 GACATATGCACAAAAATTCAATCCATA 57.468 29.630 1.58 0.00 0.00 2.74
1558 1666 9.316730 ACATATGCACAAAAATTCAATCCATAC 57.683 29.630 1.58 0.00 0.00 2.39
1559 1667 9.315525 CATATGCACAAAAATTCAATCCATACA 57.684 29.630 0.00 0.00 0.00 2.29
1562 1670 9.887629 ATGCACAAAAATTCAATCCATACATAA 57.112 25.926 0.00 0.00 0.00 1.90
1563 1671 9.368674 TGCACAAAAATTCAATCCATACATAAG 57.631 29.630 0.00 0.00 0.00 1.73
1564 1672 8.819974 GCACAAAAATTCAATCCATACATAAGG 58.180 33.333 0.00 0.00 0.00 2.69
1571 1679 9.872684 AATTCAATCCATACATAAGGATCTTGT 57.127 29.630 0.00 0.00 43.67 3.16
1572 1680 9.872684 ATTCAATCCATACATAAGGATCTTGTT 57.127 29.630 0.00 0.00 43.67 2.83
1573 1681 9.699410 TTCAATCCATACATAAGGATCTTGTTT 57.301 29.630 0.00 0.00 43.67 2.83
1574 1682 9.123902 TCAATCCATACATAAGGATCTTGTTTG 57.876 33.333 0.00 0.00 43.67 2.93
1575 1683 6.942532 TCCATACATAAGGATCTTGTTTGC 57.057 37.500 0.00 0.00 0.00 3.68
1576 1684 6.662755 TCCATACATAAGGATCTTGTTTGCT 58.337 36.000 0.00 0.00 0.00 3.91
1577 1685 7.118723 TCCATACATAAGGATCTTGTTTGCTT 58.881 34.615 0.00 0.00 0.00 3.91
1578 1686 7.615365 TCCATACATAAGGATCTTGTTTGCTTT 59.385 33.333 0.00 0.00 0.00 3.51
1579 1687 8.253113 CCATACATAAGGATCTTGTTTGCTTTT 58.747 33.333 0.00 0.00 0.00 2.27
1580 1688 9.643693 CATACATAAGGATCTTGTTTGCTTTTT 57.356 29.630 0.00 0.00 0.00 1.94
1706 1814 8.687292 AATTGACTAGTGATTGATGCACATAT 57.313 30.769 0.00 0.00 38.70 1.78
1707 1815 9.783081 AATTGACTAGTGATTGATGCACATATA 57.217 29.630 0.00 0.00 38.70 0.86
1708 1816 9.955102 ATTGACTAGTGATTGATGCACATATAT 57.045 29.630 0.00 0.00 38.70 0.86
1768 1876 7.148120 CCTCATCAAAATAGAGTTGCAGATTGT 60.148 37.037 0.00 0.00 0.00 2.71
1769 1877 8.114331 TCATCAAAATAGAGTTGCAGATTGTT 57.886 30.769 0.00 0.00 0.00 2.83
1770 1878 8.579006 TCATCAAAATAGAGTTGCAGATTGTTT 58.421 29.630 0.00 0.00 0.00 2.83
1771 1879 8.644619 CATCAAAATAGAGTTGCAGATTGTTTG 58.355 33.333 0.00 0.00 0.00 2.93
1772 1880 7.147312 TCAAAATAGAGTTGCAGATTGTTTGG 58.853 34.615 0.00 0.00 0.00 3.28
1773 1881 6.899393 AAATAGAGTTGCAGATTGTTTGGA 57.101 33.333 0.00 0.00 0.00 3.53
1774 1882 6.899393 AATAGAGTTGCAGATTGTTTGGAA 57.101 33.333 0.00 0.00 0.00 3.53
1775 1883 6.899393 ATAGAGTTGCAGATTGTTTGGAAA 57.101 33.333 0.00 0.00 0.00 3.13
1776 1884 5.596836 AGAGTTGCAGATTGTTTGGAAAA 57.403 34.783 0.00 0.00 0.00 2.29
1777 1885 5.976458 AGAGTTGCAGATTGTTTGGAAAAA 58.024 33.333 0.00 0.00 0.00 1.94
1778 1886 6.585416 AGAGTTGCAGATTGTTTGGAAAAAT 58.415 32.000 0.00 0.00 0.00 1.82
1779 1887 7.725251 AGAGTTGCAGATTGTTTGGAAAAATA 58.275 30.769 0.00 0.00 0.00 1.40
1780 1888 7.653311 AGAGTTGCAGATTGTTTGGAAAAATAC 59.347 33.333 0.00 0.00 0.00 1.89
1781 1889 7.271511 AGTTGCAGATTGTTTGGAAAAATACA 58.728 30.769 0.00 0.00 0.00 2.29
1782 1890 7.439056 AGTTGCAGATTGTTTGGAAAAATACAG 59.561 33.333 0.00 0.00 0.00 2.74
1783 1891 5.695816 TGCAGATTGTTTGGAAAAATACAGC 59.304 36.000 0.00 0.00 0.00 4.40
1784 1892 5.120674 GCAGATTGTTTGGAAAAATACAGCC 59.879 40.000 0.00 0.00 0.00 4.85
1785 1893 5.345741 CAGATTGTTTGGAAAAATACAGCCG 59.654 40.000 0.00 0.00 0.00 5.52
1786 1894 4.657436 TTGTTTGGAAAAATACAGCCGT 57.343 36.364 0.00 0.00 0.00 5.68
1787 1895 5.769484 TTGTTTGGAAAAATACAGCCGTA 57.231 34.783 0.00 0.00 0.00 4.02
1788 1896 5.110940 TGTTTGGAAAAATACAGCCGTAC 57.889 39.130 0.00 0.00 0.00 3.67
1789 1897 4.822896 TGTTTGGAAAAATACAGCCGTACT 59.177 37.500 0.00 0.00 0.00 2.73
1800 1908 2.295253 AGCCGTACTGAATGTAGCAC 57.705 50.000 0.00 0.00 0.00 4.40
1801 1909 1.825474 AGCCGTACTGAATGTAGCACT 59.175 47.619 0.00 0.00 0.00 4.40
1802 1910 2.233922 AGCCGTACTGAATGTAGCACTT 59.766 45.455 0.00 0.00 0.00 3.16
1803 1911 3.000727 GCCGTACTGAATGTAGCACTTT 58.999 45.455 0.00 0.00 0.00 2.66
1804 1912 3.435671 GCCGTACTGAATGTAGCACTTTT 59.564 43.478 0.00 0.00 0.00 2.27
1805 1913 4.669197 GCCGTACTGAATGTAGCACTTTTG 60.669 45.833 0.00 0.00 0.00 2.44
1806 1914 4.451096 CCGTACTGAATGTAGCACTTTTGT 59.549 41.667 0.00 0.00 0.00 2.83
1807 1915 5.389516 CCGTACTGAATGTAGCACTTTTGTC 60.390 44.000 0.00 0.00 0.00 3.18
1808 1916 5.405571 CGTACTGAATGTAGCACTTTTGTCT 59.594 40.000 0.00 0.00 0.00 3.41
1809 1917 6.584942 CGTACTGAATGTAGCACTTTTGTCTA 59.415 38.462 0.00 0.00 0.00 2.59
1810 1918 7.201359 CGTACTGAATGTAGCACTTTTGTCTAG 60.201 40.741 0.00 0.00 0.00 2.43
1811 1919 5.409826 ACTGAATGTAGCACTTTTGTCTAGC 59.590 40.000 0.00 0.00 0.00 3.42
1812 1920 5.551233 TGAATGTAGCACTTTTGTCTAGCT 58.449 37.500 0.00 0.00 39.22 3.32
1813 1921 5.639506 TGAATGTAGCACTTTTGTCTAGCTC 59.360 40.000 0.00 0.00 36.80 4.09
1814 1922 4.600692 TGTAGCACTTTTGTCTAGCTCA 57.399 40.909 0.00 0.00 36.80 4.26
1815 1923 4.956085 TGTAGCACTTTTGTCTAGCTCAA 58.044 39.130 0.00 0.00 36.80 3.02
1816 1924 4.991056 TGTAGCACTTTTGTCTAGCTCAAG 59.009 41.667 0.00 0.00 36.80 3.02
1817 1925 4.342862 AGCACTTTTGTCTAGCTCAAGA 57.657 40.909 0.00 0.00 0.00 3.02
1818 1926 4.314121 AGCACTTTTGTCTAGCTCAAGAG 58.686 43.478 12.74 12.74 34.57 2.85
1819 1927 4.039730 AGCACTTTTGTCTAGCTCAAGAGA 59.960 41.667 17.81 0.00 33.30 3.10
1820 1928 4.388469 GCACTTTTGTCTAGCTCAAGAGAG 59.612 45.833 17.81 13.44 44.96 3.20
1821 1929 4.928615 CACTTTTGTCTAGCTCAAGAGAGG 59.071 45.833 17.81 10.02 42.33 3.69
1822 1930 4.020662 ACTTTTGTCTAGCTCAAGAGAGGG 60.021 45.833 17.81 0.00 42.33 4.30
1823 1931 1.479709 TGTCTAGCTCAAGAGAGGGC 58.520 55.000 0.32 0.00 42.33 5.19
1824 1932 0.750249 GTCTAGCTCAAGAGAGGGCC 59.250 60.000 0.00 0.00 42.33 5.80
1825 1933 0.397816 TCTAGCTCAAGAGAGGGCCC 60.398 60.000 16.46 16.46 42.33 5.80
1826 1934 1.383248 TAGCTCAAGAGAGGGCCCC 60.383 63.158 21.43 10.60 42.33 5.80
1827 1935 2.898472 TAGCTCAAGAGAGGGCCCCC 62.898 65.000 21.43 6.71 42.33 5.40
1828 1936 2.285668 CTCAAGAGAGGGCCCCCA 60.286 66.667 21.43 0.00 38.26 4.96
1829 1937 1.695597 CTCAAGAGAGGGCCCCCAT 60.696 63.158 21.43 3.87 38.26 4.00
1830 1938 1.992519 CTCAAGAGAGGGCCCCCATG 61.993 65.000 21.43 11.70 38.26 3.66
1831 1939 2.128226 AAGAGAGGGCCCCCATGT 59.872 61.111 21.43 0.00 38.92 3.21
1832 1940 0.988145 CAAGAGAGGGCCCCCATGTA 60.988 60.000 21.43 0.00 38.92 2.29
1833 1941 0.028642 AAGAGAGGGCCCCCATGTAT 60.029 55.000 21.43 0.00 38.92 2.29
1834 1942 0.474660 AGAGAGGGCCCCCATGTATC 60.475 60.000 21.43 7.63 38.92 2.24
1835 1943 1.831652 GAGAGGGCCCCCATGTATCG 61.832 65.000 21.43 0.00 38.92 2.92
1836 1944 1.841556 GAGGGCCCCCATGTATCGA 60.842 63.158 21.43 0.00 38.92 3.59
1837 1945 1.831652 GAGGGCCCCCATGTATCGAG 61.832 65.000 21.43 0.00 38.92 4.04
1838 1946 2.750350 GGCCCCCATGTATCGAGG 59.250 66.667 0.00 0.00 0.00 4.63
1839 1947 1.841556 GGCCCCCATGTATCGAGGA 60.842 63.158 0.00 0.00 0.00 3.71
1840 1948 1.415672 GGCCCCCATGTATCGAGGAA 61.416 60.000 0.00 0.00 0.00 3.36
1841 1949 0.472471 GCCCCCATGTATCGAGGAAA 59.528 55.000 0.00 0.00 0.00 3.13
1842 1950 1.073923 GCCCCCATGTATCGAGGAAAT 59.926 52.381 0.00 0.00 0.00 2.17
1843 1951 2.489073 GCCCCCATGTATCGAGGAAATT 60.489 50.000 0.00 0.00 0.00 1.82
1844 1952 3.832527 CCCCCATGTATCGAGGAAATTT 58.167 45.455 0.00 0.00 0.00 1.82
1845 1953 4.215109 CCCCCATGTATCGAGGAAATTTT 58.785 43.478 0.00 0.00 0.00 1.82
1846 1954 4.037923 CCCCCATGTATCGAGGAAATTTTG 59.962 45.833 0.00 0.00 0.00 2.44
1847 1955 4.499696 CCCCATGTATCGAGGAAATTTTGC 60.500 45.833 0.00 0.00 0.00 3.68
1848 1956 4.499696 CCCATGTATCGAGGAAATTTTGCC 60.500 45.833 0.00 0.00 0.00 4.52
1849 1957 4.499696 CCATGTATCGAGGAAATTTTGCCC 60.500 45.833 0.00 0.00 0.00 5.36
1850 1958 3.020984 TGTATCGAGGAAATTTTGCCCC 58.979 45.455 0.00 0.00 0.00 5.80
1851 1959 2.532250 ATCGAGGAAATTTTGCCCCT 57.468 45.000 0.00 0.00 0.00 4.79
1852 1960 3.662759 ATCGAGGAAATTTTGCCCCTA 57.337 42.857 0.00 0.00 0.00 3.53
1853 1961 2.999331 TCGAGGAAATTTTGCCCCTAG 58.001 47.619 0.00 0.00 0.00 3.02
1854 1962 2.574369 TCGAGGAAATTTTGCCCCTAGA 59.426 45.455 3.33 3.33 0.00 2.43
1855 1963 3.202151 TCGAGGAAATTTTGCCCCTAGAT 59.798 43.478 3.33 0.00 0.00 1.98
1856 1964 3.954258 CGAGGAAATTTTGCCCCTAGATT 59.046 43.478 0.00 0.00 0.00 2.40
1857 1965 5.104277 TCGAGGAAATTTTGCCCCTAGATTA 60.104 40.000 3.33 0.00 0.00 1.75
1858 1966 5.770162 CGAGGAAATTTTGCCCCTAGATTAT 59.230 40.000 0.00 0.00 0.00 1.28
1859 1967 6.940298 CGAGGAAATTTTGCCCCTAGATTATA 59.060 38.462 0.00 0.00 0.00 0.98
1860 1968 7.447238 CGAGGAAATTTTGCCCCTAGATTATAA 59.553 37.037 0.00 0.00 0.00 0.98
1861 1969 8.478775 AGGAAATTTTGCCCCTAGATTATAAC 57.521 34.615 0.00 0.00 0.00 1.89
1862 1970 8.289544 AGGAAATTTTGCCCCTAGATTATAACT 58.710 33.333 0.00 0.00 0.00 2.24
1863 1971 8.577296 GGAAATTTTGCCCCTAGATTATAACTC 58.423 37.037 0.00 0.00 0.00 3.01
1864 1972 9.355916 GAAATTTTGCCCCTAGATTATAACTCT 57.644 33.333 0.00 0.00 0.00 3.24
1868 1976 8.974292 TTTGCCCCTAGATTATAACTCTATCT 57.026 34.615 0.00 0.00 33.46 1.98
1869 1977 8.974292 TTGCCCCTAGATTATAACTCTATCTT 57.026 34.615 0.00 0.00 31.46 2.40
1870 1978 8.974292 TGCCCCTAGATTATAACTCTATCTTT 57.026 34.615 0.00 0.00 31.46 2.52
1871 1979 9.393786 TGCCCCTAGATTATAACTCTATCTTTT 57.606 33.333 0.00 0.00 31.46 2.27
1894 2002 8.598202 TTTTGGAATAAAACCTCTATTACCCC 57.402 34.615 0.00 0.00 0.00 4.95
1895 2003 6.270219 TGGAATAAAACCTCTATTACCCCC 57.730 41.667 0.00 0.00 0.00 5.40
1896 2004 5.163174 TGGAATAAAACCTCTATTACCCCCG 60.163 44.000 0.00 0.00 0.00 5.73
1897 2005 2.723322 AAAACCTCTATTACCCCCGC 57.277 50.000 0.00 0.00 0.00 6.13
1898 2006 1.587066 AAACCTCTATTACCCCCGCA 58.413 50.000 0.00 0.00 0.00 5.69
1899 2007 1.587066 AACCTCTATTACCCCCGCAA 58.413 50.000 0.00 0.00 0.00 4.85
1900 2008 1.587066 ACCTCTATTACCCCCGCAAA 58.413 50.000 0.00 0.00 0.00 3.68
1901 2009 1.917568 ACCTCTATTACCCCCGCAAAA 59.082 47.619 0.00 0.00 0.00 2.44
1902 2010 2.309458 ACCTCTATTACCCCCGCAAAAA 59.691 45.455 0.00 0.00 0.00 1.94
1932 2040 9.889128 TCATGTTCTTTTTCTCTTTTGGAAAAT 57.111 25.926 0.00 0.00 40.71 1.82
1938 2046 8.360390 TCTTTTTCTCTTTTGGAAAATAGGAGC 58.640 33.333 0.00 0.00 40.71 4.70
1939 2047 7.839680 TTTTCTCTTTTGGAAAATAGGAGCT 57.160 32.000 0.00 0.00 37.63 4.09
1940 2048 7.839680 TTTCTCTTTTGGAAAATAGGAGCTT 57.160 32.000 0.00 0.00 30.94 3.74
1941 2049 7.839680 TTCTCTTTTGGAAAATAGGAGCTTT 57.160 32.000 0.00 0.00 0.00 3.51
1948 2056 7.891498 TTGGAAAATAGGAGCTTTATTACCC 57.109 36.000 16.19 13.90 0.00 3.69
1978 2086 9.838339 TCTAAAATCTGAGGATGAATTAGGAAC 57.162 33.333 0.00 0.00 31.56 3.62
1984 2092 8.101309 TCTGAGGATGAATTAGGAACCAATTA 57.899 34.615 0.00 0.00 0.00 1.40
2023 2131 0.308376 TCGTCGTCATCGTGTTGTCA 59.692 50.000 0.00 0.00 38.33 3.58
2122 2237 7.239763 TGATGTTAGACTGATGTTTGGACTA 57.760 36.000 0.00 0.00 0.00 2.59
2225 2340 4.785512 CAGCTCGCTCTCGCCGTT 62.786 66.667 0.00 0.00 35.26 4.44
2629 2746 3.064207 TGCTGATGACAACGAAGGTAAC 58.936 45.455 0.00 0.00 0.00 2.50
2637 2757 3.326747 ACAACGAAGGTAACATCTCAGC 58.673 45.455 0.00 0.00 41.41 4.26
2640 2760 2.301870 ACGAAGGTAACATCTCAGCCAA 59.698 45.455 0.00 0.00 41.41 4.52
2865 3002 8.326713 CGAATAACATTGATATGCTAGCATCTC 58.673 37.037 32.76 29.79 37.82 2.75
2869 3006 8.461249 AACATTGATATGCTAGCATCTCTTTT 57.539 30.769 32.76 18.78 37.82 2.27
2985 3124 1.001974 TGTGAATCAAGCGTAGGCAGT 59.998 47.619 10.48 0.00 43.41 4.40
2992 3131 1.127951 CAAGCGTAGGCAGTTTTACCG 59.872 52.381 10.48 0.00 43.41 4.02
3280 3420 2.303022 TGCTTTTGTGTCTCCCCTCTAG 59.697 50.000 0.00 0.00 0.00 2.43
3561 3706 8.594881 ATTTGATACTCTGTTCCTTATAAGCG 57.405 34.615 6.99 1.18 0.00 4.68
3575 3720 5.335661 CCTTATAAGCGTTTTGAGTGCCTTT 60.336 40.000 6.99 0.00 0.00 3.11
3725 3870 7.653647 ACTCGAAGGTATCATCTATTTGTCTC 58.346 38.462 0.00 0.00 0.00 3.36
3743 3888 0.739462 TCTTGCGTGCCTAACCATCG 60.739 55.000 0.00 0.00 0.00 3.84
3859 4004 2.236395 GTCAGTACCCAGGTAGCACATT 59.764 50.000 0.00 0.00 0.00 2.71
4205 4359 3.933879 TGACGTGCCATGTCATTCT 57.066 47.368 15.59 0.00 39.05 2.40
4327 4481 8.078060 TCATCTCACTTACTGGTTGATATGAA 57.922 34.615 0.00 0.00 0.00 2.57
4332 4486 8.662781 TCACTTACTGGTTGATATGAATAAGC 57.337 34.615 0.00 0.00 0.00 3.09
4403 4559 4.768968 AGCAGTGGTCTCAAGCAATTTATT 59.231 37.500 0.00 0.00 34.02 1.40
4404 4560 5.244626 AGCAGTGGTCTCAAGCAATTTATTT 59.755 36.000 0.00 0.00 34.02 1.40
4405 4561 5.346822 GCAGTGGTCTCAAGCAATTTATTTG 59.653 40.000 0.00 0.00 38.43 2.32
4406 4562 6.680810 CAGTGGTCTCAAGCAATTTATTTGA 58.319 36.000 0.00 0.00 37.53 2.69
4407 4563 6.583806 CAGTGGTCTCAAGCAATTTATTTGAC 59.416 38.462 0.00 0.00 37.53 3.18
4408 4564 6.265196 AGTGGTCTCAAGCAATTTATTTGACA 59.735 34.615 0.00 0.00 37.53 3.58
4409 4565 7.039504 AGTGGTCTCAAGCAATTTATTTGACAT 60.040 33.333 0.00 0.00 37.53 3.06
4410 4566 7.062605 GTGGTCTCAAGCAATTTATTTGACATG 59.937 37.037 0.00 0.00 37.53 3.21
4411 4567 7.092716 GGTCTCAAGCAATTTATTTGACATGT 58.907 34.615 0.00 0.00 37.53 3.21
4412 4568 7.062605 GGTCTCAAGCAATTTATTTGACATGTG 59.937 37.037 1.15 0.00 37.53 3.21
4413 4569 7.809331 GTCTCAAGCAATTTATTTGACATGTGA 59.191 33.333 1.15 0.00 37.53 3.58
4414 4570 8.525316 TCTCAAGCAATTTATTTGACATGTGAT 58.475 29.630 1.15 0.00 37.53 3.06
4415 4571 8.692110 TCAAGCAATTTATTTGACATGTGATC 57.308 30.769 1.15 0.00 37.53 2.92
4416 4572 8.525316 TCAAGCAATTTATTTGACATGTGATCT 58.475 29.630 1.15 0.00 37.53 2.75
4417 4573 8.804743 CAAGCAATTTATTTGACATGTGATCTC 58.195 33.333 1.15 0.00 37.53 2.75
4418 4574 8.058667 AGCAATTTATTTGACATGTGATCTCA 57.941 30.769 1.15 0.00 37.53 3.27
4419 4575 8.525316 AGCAATTTATTTGACATGTGATCTCAA 58.475 29.630 1.15 0.00 37.53 3.02
4420 4576 8.804743 GCAATTTATTTGACATGTGATCTCAAG 58.195 33.333 1.15 0.00 37.53 3.02
4421 4577 8.804743 CAATTTATTTGACATGTGATCTCAAGC 58.195 33.333 1.15 0.00 37.53 4.01
4422 4578 7.451501 TTTATTTGACATGTGATCTCAAGCA 57.548 32.000 1.15 0.00 0.00 3.91
4423 4579 5.970317 ATTTGACATGTGATCTCAAGCAA 57.030 34.783 1.15 4.31 0.00 3.91
4424 4580 5.970317 TTTGACATGTGATCTCAAGCAAT 57.030 34.783 1.15 0.00 0.00 3.56
4425 4581 5.970317 TTGACATGTGATCTCAAGCAATT 57.030 34.783 1.15 0.00 0.00 2.32
4426 4582 5.970317 TGACATGTGATCTCAAGCAATTT 57.030 34.783 1.15 0.00 0.00 1.82
4427 4583 7.451501 TTGACATGTGATCTCAAGCAATTTA 57.548 32.000 1.15 0.00 0.00 1.40
4428 4584 7.634671 TGACATGTGATCTCAAGCAATTTAT 57.365 32.000 1.15 0.00 0.00 1.40
4500 4656 3.087031 CAGAACCATCAATCCAGCAAGT 58.913 45.455 0.00 0.00 0.00 3.16
4553 4722 5.047566 TCCTTCACACCTGAATTTCTTCA 57.952 39.130 0.00 0.00 39.07 3.02
4638 4807 8.874744 AAGAGAATTTTGATCAGGAGAAATCA 57.125 30.769 4.06 0.00 0.00 2.57
4674 4843 3.782244 GACGCAGCTGCTGGTTCG 61.782 66.667 34.22 24.67 39.32 3.95
4681 4850 4.717629 CTGCTGGTTCGACGCCGA 62.718 66.667 0.00 0.00 43.96 5.54
4832 5009 3.683365 TGTCATAGTCATGCAGTGTGT 57.317 42.857 0.00 0.00 31.73 3.72
4884 5061 6.042552 TCTGATATGAGTTCTGAGGGGAAATC 59.957 42.308 0.00 0.00 39.70 2.17
4912 5090 4.127566 AGCATTTTGGTGATTATGTGCC 57.872 40.909 0.00 0.00 32.06 5.01
4924 5102 2.004583 TATGTGCCGAGTACAAGTGC 57.995 50.000 0.00 0.00 31.17 4.40
5210 5471 2.959707 AGTAAGGGCGTAATCTCTCCAG 59.040 50.000 0.00 0.00 0.00 3.86
5214 5475 1.067821 GGGCGTAATCTCTCCAGAGTG 59.932 57.143 3.50 0.00 42.60 3.51
5271 5532 4.452114 TCATGAAACATTTCTGTCAGGTCG 59.548 41.667 0.00 0.00 38.02 4.79
5275 5536 1.026718 CATTTCTGTCAGGTCGCCCC 61.027 60.000 0.00 0.00 0.00 5.80
5383 5644 2.442236 TCCCCTTCAGCAAATGATCC 57.558 50.000 0.00 0.00 37.89 3.36
5412 5673 3.694535 ATGAACTAGTCCTTACTCGCG 57.305 47.619 0.00 0.00 37.15 5.87
5417 5678 2.101770 GTCCTTACTCGCGGACGG 59.898 66.667 6.13 0.00 40.18 4.79
5420 5681 2.126228 CTTACTCGCGGACGGCAA 60.126 61.111 6.13 0.00 43.84 4.52
5423 5684 2.807631 TTACTCGCGGACGGCAACTC 62.808 60.000 6.13 0.00 43.84 3.01
5466 5727 1.210478 CGGTGGATCCAGAAACCTCAT 59.790 52.381 16.81 0.00 35.57 2.90
5470 5731 4.823989 GGTGGATCCAGAAACCTCATAATG 59.176 45.833 16.81 0.00 35.97 1.90
5588 5849 1.612463 GGATCCTTTCATGGCAGATGC 59.388 52.381 3.84 0.00 41.14 3.91
5624 5885 2.681848 TCTCTTAATCGTCGACCTGACC 59.318 50.000 10.58 0.00 45.23 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 29 6.818644 ACGTGAACATTTAAGATCATACTGCT 59.181 34.615 0.00 0.00 0.00 4.24
35 38 5.277601 CGACCAACGTGAACATTTAAGAT 57.722 39.130 0.00 0.00 37.22 2.40
51 54 1.129917 TCCCACTTACCAACGACCAA 58.870 50.000 0.00 0.00 0.00 3.67
57 60 0.109153 AACGGGTCCCACTTACCAAC 59.891 55.000 9.12 0.00 38.87 3.77
66 69 1.066716 CACTCGAATAAACGGGTCCCA 60.067 52.381 9.12 0.00 45.45 4.37
67 70 1.648504 CACTCGAATAAACGGGTCCC 58.351 55.000 0.00 0.00 45.45 4.46
73 76 0.373716 GCTGGCCACTCGAATAAACG 59.626 55.000 0.00 0.00 0.00 3.60
97 100 2.064014 CGACCTAAAAACTCGACCACC 58.936 52.381 0.00 0.00 0.00 4.61
149 154 7.136772 GGTTTGTAAGGCACGAATATAAATCC 58.863 38.462 0.00 0.00 33.01 3.01
150 155 7.136772 GGGTTTGTAAGGCACGAATATAAATC 58.863 38.462 0.00 0.00 33.01 2.17
158 163 1.134037 ACTGGGTTTGTAAGGCACGAA 60.134 47.619 0.00 0.00 0.00 3.85
206 232 4.806640 ATAACCAAAAAGTGCATGGGAG 57.193 40.909 8.12 0.00 38.58 4.30
224 297 7.014711 TGTGCCCACAATTTCTTTCAGTTATAA 59.985 33.333 0.00 0.00 38.56 0.98
230 303 3.731652 TGTGCCCACAATTTCTTTCAG 57.268 42.857 0.00 0.00 38.56 3.02
287 360 6.127196 TGGTCACTTTGCCTACAATTCTTTTT 60.127 34.615 0.00 0.00 35.21 1.94
295 368 4.425180 TTAGTGGTCACTTTGCCTACAA 57.575 40.909 9.02 0.00 42.54 2.41
304 377 9.793259 TCTCTTTGAATATTTTAGTGGTCACTT 57.207 29.630 9.02 0.00 42.54 3.16
305 378 9.793259 TTCTCTTTGAATATTTTAGTGGTCACT 57.207 29.630 8.74 8.74 45.02 3.41
321 394 9.046846 TCTTTATCAGGGTCTATTCTCTTTGAA 57.953 33.333 0.00 0.00 39.24 2.69
334 407 5.425862 AGGTAGTTCCTTCTTTATCAGGGTC 59.574 44.000 0.00 0.00 45.67 4.46
351 424 4.796110 ATCCATGCATTACCAGGTAGTT 57.204 40.909 0.00 0.00 0.00 2.24
524 606 1.136110 CCAACCAACTCGTGCCTTTTT 59.864 47.619 0.00 0.00 0.00 1.94
557 640 1.349067 GACAGTGGTGGGGTTAGTCT 58.651 55.000 0.00 0.00 0.00 3.24
574 660 0.391661 TTGGCCTGCGAGATCTTGAC 60.392 55.000 14.59 5.86 0.00 3.18
597 683 1.095600 TGTGGTCTTCTCTCGGATCG 58.904 55.000 0.00 0.00 0.00 3.69
623 709 4.007644 CAGTGGGGCGACAGAGCA 62.008 66.667 0.00 0.00 39.27 4.26
666 752 3.001736 GCAACAGGAGAGATAATTGACGC 59.998 47.826 0.00 0.00 0.00 5.19
690 776 7.935755 TGCAAGGATAGAGATATTCTTTTGAGG 59.064 37.037 0.00 0.00 37.36 3.86
711 797 2.685829 TATGCCCGTGCGTTGCAAG 61.686 57.895 0.00 0.00 41.47 4.01
749 835 6.089249 ACAGAGCCGATTTTTCTGATTTTT 57.911 33.333 7.64 0.00 40.54 1.94
750 836 5.712152 ACAGAGCCGATTTTTCTGATTTT 57.288 34.783 7.64 0.00 40.54 1.82
751 837 5.712152 AACAGAGCCGATTTTTCTGATTT 57.288 34.783 7.64 0.00 40.54 2.17
752 838 5.010012 ACAAACAGAGCCGATTTTTCTGATT 59.990 36.000 7.64 0.00 40.54 2.57
753 839 4.520492 ACAAACAGAGCCGATTTTTCTGAT 59.480 37.500 7.64 0.00 40.54 2.90
754 840 3.882888 ACAAACAGAGCCGATTTTTCTGA 59.117 39.130 7.64 0.00 40.54 3.27
755 841 3.976942 CACAAACAGAGCCGATTTTTCTG 59.023 43.478 0.00 0.00 43.04 3.02
756 842 3.882888 TCACAAACAGAGCCGATTTTTCT 59.117 39.130 0.00 0.00 0.00 2.52
757 843 4.223320 TCACAAACAGAGCCGATTTTTC 57.777 40.909 0.00 0.00 0.00 2.29
758 844 4.647424 TTCACAAACAGAGCCGATTTTT 57.353 36.364 0.00 0.00 0.00 1.94
759 845 4.338118 TCTTTCACAAACAGAGCCGATTTT 59.662 37.500 0.00 0.00 0.00 1.82
760 846 3.882888 TCTTTCACAAACAGAGCCGATTT 59.117 39.130 0.00 0.00 0.00 2.17
761 847 3.476552 TCTTTCACAAACAGAGCCGATT 58.523 40.909 0.00 0.00 0.00 3.34
762 848 3.126001 TCTTTCACAAACAGAGCCGAT 57.874 42.857 0.00 0.00 0.00 4.18
763 849 2.613026 TCTTTCACAAACAGAGCCGA 57.387 45.000 0.00 0.00 0.00 5.54
764 850 3.691049 TTTCTTTCACAAACAGAGCCG 57.309 42.857 0.00 0.00 0.00 5.52
765 851 4.363138 CCTTTTCTTTCACAAACAGAGCC 58.637 43.478 0.00 0.00 0.00 4.70
766 852 4.363138 CCCTTTTCTTTCACAAACAGAGC 58.637 43.478 0.00 0.00 0.00 4.09
767 853 4.363138 GCCCTTTTCTTTCACAAACAGAG 58.637 43.478 0.00 0.00 0.00 3.35
768 854 3.132111 GGCCCTTTTCTTTCACAAACAGA 59.868 43.478 0.00 0.00 0.00 3.41
769 855 3.118811 TGGCCCTTTTCTTTCACAAACAG 60.119 43.478 0.00 0.00 0.00 3.16
770 856 2.834549 TGGCCCTTTTCTTTCACAAACA 59.165 40.909 0.00 0.00 0.00 2.83
771 857 3.535280 TGGCCCTTTTCTTTCACAAAC 57.465 42.857 0.00 0.00 0.00 2.93
772 858 3.517500 ACTTGGCCCTTTTCTTTCACAAA 59.482 39.130 0.00 0.00 0.00 2.83
773 859 3.103742 ACTTGGCCCTTTTCTTTCACAA 58.896 40.909 0.00 0.00 0.00 3.33
774 860 2.745968 ACTTGGCCCTTTTCTTTCACA 58.254 42.857 0.00 0.00 0.00 3.58
775 861 3.634910 TGTACTTGGCCCTTTTCTTTCAC 59.365 43.478 0.00 0.00 0.00 3.18
776 862 3.904717 TGTACTTGGCCCTTTTCTTTCA 58.095 40.909 0.00 0.00 0.00 2.69
777 863 5.468540 AATGTACTTGGCCCTTTTCTTTC 57.531 39.130 0.00 0.00 0.00 2.62
778 864 6.987403 TTAATGTACTTGGCCCTTTTCTTT 57.013 33.333 0.00 0.00 0.00 2.52
779 865 7.386059 CAATTAATGTACTTGGCCCTTTTCTT 58.614 34.615 0.00 0.00 0.00 2.52
780 866 6.574269 GCAATTAATGTACTTGGCCCTTTTCT 60.574 38.462 0.00 0.00 0.00 2.52
781 867 5.580691 GCAATTAATGTACTTGGCCCTTTTC 59.419 40.000 0.00 0.00 0.00 2.29
782 868 5.012561 TGCAATTAATGTACTTGGCCCTTTT 59.987 36.000 0.00 0.00 0.00 2.27
783 869 4.530161 TGCAATTAATGTACTTGGCCCTTT 59.470 37.500 0.00 0.00 0.00 3.11
784 870 4.093011 TGCAATTAATGTACTTGGCCCTT 58.907 39.130 0.00 0.00 0.00 3.95
785 871 3.701040 CTGCAATTAATGTACTTGGCCCT 59.299 43.478 0.00 0.00 0.00 5.19
786 872 3.181476 CCTGCAATTAATGTACTTGGCCC 60.181 47.826 0.00 0.00 0.00 5.80
793 879 9.860898 AAATTTCTTCTCCTGCAATTAATGTAC 57.139 29.630 0.00 0.00 0.00 2.90
795 881 9.428097 GAAAATTTCTTCTCCTGCAATTAATGT 57.572 29.630 0.00 0.00 0.00 2.71
796 882 8.876790 GGAAAATTTCTTCTCCTGCAATTAATG 58.123 33.333 5.65 0.00 0.00 1.90
803 889 2.819608 CCGGAAAATTTCTTCTCCTGCA 59.180 45.455 0.00 0.00 0.00 4.41
818 904 3.687264 GCCCAGATAGAAATTCCCGGAAA 60.687 47.826 0.73 0.00 0.00 3.13
819 905 2.158667 GCCCAGATAGAAATTCCCGGAA 60.159 50.000 0.73 1.31 0.00 4.30
820 906 1.420138 GCCCAGATAGAAATTCCCGGA 59.580 52.381 0.73 0.00 0.00 5.14
821 907 1.545651 GGCCCAGATAGAAATTCCCGG 60.546 57.143 0.00 0.00 0.00 5.73
822 908 1.545651 GGGCCCAGATAGAAATTCCCG 60.546 57.143 19.95 0.00 0.00 5.14
823 909 1.499007 TGGGCCCAGATAGAAATTCCC 59.501 52.381 24.45 0.00 0.00 3.97
864 950 0.809385 TCCACGTCCATCGAGAGTTC 59.191 55.000 0.00 0.00 42.86 3.01
876 962 1.153549 GCCACTGATCCTCCACGTC 60.154 63.158 0.00 0.00 0.00 4.34
890 978 2.203015 ACACCACACACTCGCCAC 60.203 61.111 0.00 0.00 0.00 5.01
953 1041 1.079266 GTGGTCTGCTCTGCTCTGG 60.079 63.158 0.00 0.00 0.00 3.86
954 1042 1.079266 GGTGGTCTGCTCTGCTCTG 60.079 63.158 0.00 0.00 0.00 3.35
955 1043 2.644212 CGGTGGTCTGCTCTGCTCT 61.644 63.158 0.00 0.00 0.00 4.09
1287 1384 0.528684 GATAGTGGAGCGGAGTGTGC 60.529 60.000 0.00 0.00 0.00 4.57
1288 1385 1.066303 GAGATAGTGGAGCGGAGTGTG 59.934 57.143 0.00 0.00 0.00 3.82
1289 1386 1.341089 TGAGATAGTGGAGCGGAGTGT 60.341 52.381 0.00 0.00 0.00 3.55
1307 1404 6.701841 GCATTAGATTGGAACGAGACTAATGA 59.298 38.462 21.03 0.00 44.22 2.57
1312 1409 4.471904 TGCATTAGATTGGAACGAGACT 57.528 40.909 0.00 0.00 0.00 3.24
1340 1440 3.313526 CGAATGGGATGTGAGAACAATCC 59.686 47.826 0.00 0.00 0.00 3.01
1358 1458 5.048713 GGAGGTTCATGAAAGAAACACGAAT 60.049 40.000 10.35 0.00 37.68 3.34
1362 1462 4.554723 CGTGGAGGTTCATGAAAGAAACAC 60.555 45.833 10.35 13.92 37.68 3.32
1467 1568 3.006110 ACATGTCACAGCAGGAAATTTGG 59.994 43.478 0.00 0.00 0.00 3.28
1507 1615 9.871238 GTCACTAGAATCAAACTTTATCTGGTA 57.129 33.333 0.00 0.00 31.69 3.25
1508 1616 8.375506 TGTCACTAGAATCAAACTTTATCTGGT 58.624 33.333 0.00 0.00 32.88 4.00
1509 1617 8.777865 TGTCACTAGAATCAAACTTTATCTGG 57.222 34.615 0.00 0.00 0.00 3.86
1516 1624 7.607607 TGTGCATATGTCACTAGAATCAAACTT 59.392 33.333 22.31 0.00 35.58 2.66
1579 1687 8.410141 ACAAGATTCTTATGTCCGTTTCAAAAA 58.590 29.630 0.00 0.00 0.00 1.94
1580 1688 7.936584 ACAAGATTCTTATGTCCGTTTCAAAA 58.063 30.769 0.00 0.00 0.00 2.44
1581 1689 7.504924 ACAAGATTCTTATGTCCGTTTCAAA 57.495 32.000 0.00 0.00 0.00 2.69
1582 1690 7.504924 AACAAGATTCTTATGTCCGTTTCAA 57.495 32.000 0.00 0.00 0.00 2.69
1583 1691 8.664798 CATAACAAGATTCTTATGTCCGTTTCA 58.335 33.333 0.00 0.00 0.00 2.69
1584 1692 8.122952 CCATAACAAGATTCTTATGTCCGTTTC 58.877 37.037 0.00 0.00 31.10 2.78
1585 1693 7.067008 CCCATAACAAGATTCTTATGTCCGTTT 59.933 37.037 0.00 0.00 31.10 3.60
1586 1694 6.542370 CCCATAACAAGATTCTTATGTCCGTT 59.458 38.462 0.00 1.28 31.10 4.44
1587 1695 6.055588 CCCATAACAAGATTCTTATGTCCGT 58.944 40.000 0.00 0.00 31.10 4.69
1588 1696 6.202954 GTCCCATAACAAGATTCTTATGTCCG 59.797 42.308 0.00 0.00 31.10 4.79
1589 1697 7.012421 GTGTCCCATAACAAGATTCTTATGTCC 59.988 40.741 0.00 0.00 31.10 4.02
1590 1698 7.770897 AGTGTCCCATAACAAGATTCTTATGTC 59.229 37.037 0.00 0.00 31.10 3.06
1722 1830 2.824689 TGGGTGCATCCACATTACAT 57.175 45.000 16.81 0.00 43.88 2.29
1768 1876 5.064558 TCAGTACGGCTGTATTTTTCCAAA 58.935 37.500 9.01 0.00 45.23 3.28
1769 1877 4.643463 TCAGTACGGCTGTATTTTTCCAA 58.357 39.130 9.01 0.00 45.23 3.53
1770 1878 4.274602 TCAGTACGGCTGTATTTTTCCA 57.725 40.909 9.01 0.00 45.23 3.53
1771 1879 5.123344 ACATTCAGTACGGCTGTATTTTTCC 59.877 40.000 9.01 0.00 45.23 3.13
1772 1880 6.178239 ACATTCAGTACGGCTGTATTTTTC 57.822 37.500 9.01 0.00 45.23 2.29
1773 1881 6.183360 GCTACATTCAGTACGGCTGTATTTTT 60.183 38.462 9.01 0.00 45.23 1.94
1774 1882 5.293569 GCTACATTCAGTACGGCTGTATTTT 59.706 40.000 9.01 0.00 45.23 1.82
1775 1883 4.809426 GCTACATTCAGTACGGCTGTATTT 59.191 41.667 9.01 0.00 45.23 1.40
1776 1884 4.142026 TGCTACATTCAGTACGGCTGTATT 60.142 41.667 9.01 0.95 45.23 1.89
1777 1885 3.383505 TGCTACATTCAGTACGGCTGTAT 59.616 43.478 9.01 3.11 45.23 2.29
1778 1886 2.756207 TGCTACATTCAGTACGGCTGTA 59.244 45.455 0.00 0.00 45.23 2.74
1779 1887 1.548719 TGCTACATTCAGTACGGCTGT 59.451 47.619 2.42 2.42 45.23 4.40
1780 1888 1.927174 GTGCTACATTCAGTACGGCTG 59.073 52.381 3.27 3.27 46.34 4.85
1781 1889 1.825474 AGTGCTACATTCAGTACGGCT 59.175 47.619 0.00 0.00 36.39 5.52
1782 1890 2.295253 AGTGCTACATTCAGTACGGC 57.705 50.000 0.00 0.00 36.39 5.68
1783 1891 4.451096 ACAAAAGTGCTACATTCAGTACGG 59.549 41.667 0.00 0.00 36.39 4.02
1784 1892 5.405571 AGACAAAAGTGCTACATTCAGTACG 59.594 40.000 0.00 0.00 36.39 3.67
1785 1893 6.787085 AGACAAAAGTGCTACATTCAGTAC 57.213 37.500 0.00 0.00 0.00 2.73
1786 1894 6.590292 GCTAGACAAAAGTGCTACATTCAGTA 59.410 38.462 0.00 0.00 0.00 2.74
1787 1895 5.409826 GCTAGACAAAAGTGCTACATTCAGT 59.590 40.000 0.00 0.00 0.00 3.41
1788 1896 5.641209 AGCTAGACAAAAGTGCTACATTCAG 59.359 40.000 0.00 0.00 31.71 3.02
1789 1897 5.551233 AGCTAGACAAAAGTGCTACATTCA 58.449 37.500 0.00 0.00 31.71 2.57
1790 1898 5.639506 TGAGCTAGACAAAAGTGCTACATTC 59.360 40.000 0.00 0.00 33.83 2.67
1791 1899 5.551233 TGAGCTAGACAAAAGTGCTACATT 58.449 37.500 0.00 0.00 33.83 2.71
1792 1900 5.152623 TGAGCTAGACAAAAGTGCTACAT 57.847 39.130 0.00 0.00 33.83 2.29
1793 1901 4.600692 TGAGCTAGACAAAAGTGCTACA 57.399 40.909 0.00 0.00 33.83 2.74
1794 1902 5.230942 TCTTGAGCTAGACAAAAGTGCTAC 58.769 41.667 0.00 0.00 33.83 3.58
1795 1903 5.243954 TCTCTTGAGCTAGACAAAAGTGCTA 59.756 40.000 0.00 0.00 33.83 3.49
1796 1904 4.039730 TCTCTTGAGCTAGACAAAAGTGCT 59.960 41.667 0.00 0.00 36.63 4.40
1797 1905 4.310769 TCTCTTGAGCTAGACAAAAGTGC 58.689 43.478 0.00 0.00 0.00 4.40
1798 1906 4.928615 CCTCTCTTGAGCTAGACAAAAGTG 59.071 45.833 0.00 0.00 38.93 3.16
1799 1907 4.020662 CCCTCTCTTGAGCTAGACAAAAGT 60.021 45.833 0.00 0.00 38.93 2.66
1800 1908 4.502962 CCCTCTCTTGAGCTAGACAAAAG 58.497 47.826 0.00 0.00 38.93 2.27
1801 1909 3.307059 GCCCTCTCTTGAGCTAGACAAAA 60.307 47.826 0.00 0.00 38.93 2.44
1802 1910 2.234908 GCCCTCTCTTGAGCTAGACAAA 59.765 50.000 0.00 0.00 38.93 2.83
1803 1911 1.827969 GCCCTCTCTTGAGCTAGACAA 59.172 52.381 0.00 0.00 38.93 3.18
1804 1912 1.479709 GCCCTCTCTTGAGCTAGACA 58.520 55.000 0.00 0.00 38.93 3.41
1805 1913 0.750249 GGCCCTCTCTTGAGCTAGAC 59.250 60.000 0.00 0.00 38.93 2.59
1806 1914 0.397816 GGGCCCTCTCTTGAGCTAGA 60.398 60.000 17.04 0.00 38.93 2.43
1807 1915 1.406860 GGGGCCCTCTCTTGAGCTAG 61.407 65.000 24.38 0.00 38.93 3.42
1808 1916 1.383248 GGGGCCCTCTCTTGAGCTA 60.383 63.158 24.38 0.00 38.93 3.32
1809 1917 2.690510 GGGGCCCTCTCTTGAGCT 60.691 66.667 24.38 0.00 38.93 4.09
1810 1918 3.803162 GGGGGCCCTCTCTTGAGC 61.803 72.222 24.38 0.03 38.93 4.26
1811 1919 1.695597 ATGGGGGCCCTCTCTTGAG 60.696 63.158 25.88 0.00 39.92 3.02
1812 1920 2.002977 CATGGGGGCCCTCTCTTGA 61.003 63.158 25.88 0.75 36.94 3.02
1813 1921 0.988145 TACATGGGGGCCCTCTCTTG 60.988 60.000 25.88 19.82 36.94 3.02
1814 1922 0.028642 ATACATGGGGGCCCTCTCTT 60.029 55.000 25.88 9.12 36.94 2.85
1815 1923 0.474660 GATACATGGGGGCCCTCTCT 60.475 60.000 25.88 7.47 36.94 3.10
1816 1924 1.831652 CGATACATGGGGGCCCTCTC 61.832 65.000 25.88 10.90 36.94 3.20
1817 1925 1.843376 CGATACATGGGGGCCCTCT 60.843 63.158 25.88 4.83 36.94 3.69
1818 1926 1.831652 CTCGATACATGGGGGCCCTC 61.832 65.000 24.38 21.26 36.94 4.30
1819 1927 1.843376 CTCGATACATGGGGGCCCT 60.843 63.158 24.38 4.59 36.94 5.19
1820 1928 2.750350 CTCGATACATGGGGGCCC 59.250 66.667 15.76 15.76 0.00 5.80
1821 1929 1.415672 TTCCTCGATACATGGGGGCC 61.416 60.000 0.00 0.00 0.00 5.80
1822 1930 0.472471 TTTCCTCGATACATGGGGGC 59.528 55.000 0.00 0.00 0.00 5.80
1823 1931 3.508845 AATTTCCTCGATACATGGGGG 57.491 47.619 0.00 0.00 0.00 5.40
1824 1932 4.499696 GCAAAATTTCCTCGATACATGGGG 60.500 45.833 0.00 0.00 0.00 4.96
1825 1933 4.499696 GGCAAAATTTCCTCGATACATGGG 60.500 45.833 0.00 0.00 0.00 4.00
1826 1934 4.499696 GGGCAAAATTTCCTCGATACATGG 60.500 45.833 0.00 0.00 0.00 3.66
1827 1935 4.499696 GGGGCAAAATTTCCTCGATACATG 60.500 45.833 0.00 0.00 0.00 3.21
1828 1936 3.636764 GGGGCAAAATTTCCTCGATACAT 59.363 43.478 0.00 0.00 0.00 2.29
1829 1937 3.020984 GGGGCAAAATTTCCTCGATACA 58.979 45.455 0.00 0.00 0.00 2.29
1830 1938 3.288092 AGGGGCAAAATTTCCTCGATAC 58.712 45.455 0.00 0.00 0.00 2.24
1831 1939 3.662759 AGGGGCAAAATTTCCTCGATA 57.337 42.857 0.00 0.00 0.00 2.92
1832 1940 2.532250 AGGGGCAAAATTTCCTCGAT 57.468 45.000 0.00 0.00 0.00 3.59
1833 1941 2.574369 TCTAGGGGCAAAATTTCCTCGA 59.426 45.455 0.00 0.00 0.00 4.04
1834 1942 2.999331 TCTAGGGGCAAAATTTCCTCG 58.001 47.619 0.00 0.00 0.00 4.63
1835 1943 8.577296 GTTATAATCTAGGGGCAAAATTTCCTC 58.423 37.037 0.00 0.00 0.00 3.71
1836 1944 8.289544 AGTTATAATCTAGGGGCAAAATTTCCT 58.710 33.333 2.10 2.10 0.00 3.36
1837 1945 8.478775 AGTTATAATCTAGGGGCAAAATTTCC 57.521 34.615 0.00 0.00 0.00 3.13
1838 1946 9.355916 AGAGTTATAATCTAGGGGCAAAATTTC 57.644 33.333 0.00 0.00 0.00 2.17
1842 1950 9.393786 AGATAGAGTTATAATCTAGGGGCAAAA 57.606 33.333 9.19 0.00 32.96 2.44
1843 1951 8.974292 AGATAGAGTTATAATCTAGGGGCAAA 57.026 34.615 9.19 0.00 32.96 3.68
1844 1952 8.974292 AAGATAGAGTTATAATCTAGGGGCAA 57.026 34.615 9.19 0.00 32.96 4.52
1845 1953 8.974292 AAAGATAGAGTTATAATCTAGGGGCA 57.026 34.615 9.19 0.00 32.96 5.36
1868 1976 9.038072 GGGGTAATAGAGGTTTTATTCCAAAAA 57.962 33.333 0.00 0.00 0.00 1.94
1869 1977 7.620491 GGGGGTAATAGAGGTTTTATTCCAAAA 59.380 37.037 0.00 0.00 0.00 2.44
1870 1978 7.127405 GGGGGTAATAGAGGTTTTATTCCAAA 58.873 38.462 0.00 0.00 0.00 3.28
1871 1979 6.635415 CGGGGGTAATAGAGGTTTTATTCCAA 60.635 42.308 0.00 0.00 0.00 3.53
1872 1980 5.163174 CGGGGGTAATAGAGGTTTTATTCCA 60.163 44.000 0.00 0.00 0.00 3.53
1873 1981 5.311265 CGGGGGTAATAGAGGTTTTATTCC 58.689 45.833 0.00 0.00 0.00 3.01
1874 1982 4.758674 GCGGGGGTAATAGAGGTTTTATTC 59.241 45.833 0.00 0.00 0.00 1.75
1875 1983 4.166531 TGCGGGGGTAATAGAGGTTTTATT 59.833 41.667 0.00 0.00 0.00 1.40
1876 1984 3.717913 TGCGGGGGTAATAGAGGTTTTAT 59.282 43.478 0.00 0.00 0.00 1.40
1877 1985 3.113824 TGCGGGGGTAATAGAGGTTTTA 58.886 45.455 0.00 0.00 0.00 1.52
1878 1986 1.917568 TGCGGGGGTAATAGAGGTTTT 59.082 47.619 0.00 0.00 0.00 2.43
1879 1987 1.587066 TGCGGGGGTAATAGAGGTTT 58.413 50.000 0.00 0.00 0.00 3.27
1880 1988 1.587066 TTGCGGGGGTAATAGAGGTT 58.413 50.000 0.00 0.00 0.00 3.50
1881 1989 1.587066 TTTGCGGGGGTAATAGAGGT 58.413 50.000 0.00 0.00 0.00 3.85
1882 1990 2.721425 TTTTGCGGGGGTAATAGAGG 57.279 50.000 0.00 0.00 0.00 3.69
1902 2010 9.889128 TCCAAAAGAGAAAAAGAACATGATTTT 57.111 25.926 0.00 0.94 0.00 1.82
1903 2011 9.889128 TTCCAAAAGAGAAAAAGAACATGATTT 57.111 25.926 0.00 0.00 0.00 2.17
1904 2012 9.889128 TTTCCAAAAGAGAAAAAGAACATGATT 57.111 25.926 0.00 0.00 30.48 2.57
1906 2014 9.889128 ATTTTCCAAAAGAGAAAAAGAACATGA 57.111 25.926 0.00 0.00 44.09 3.07
1915 2023 7.839680 AGCTCCTATTTTCCAAAAGAGAAAA 57.160 32.000 7.80 1.57 44.76 2.29
1917 2025 7.839680 AAAGCTCCTATTTTCCAAAAGAGAA 57.160 32.000 7.80 0.00 39.02 2.87
1922 2030 8.755028 GGGTAATAAAGCTCCTATTTTCCAAAA 58.245 33.333 6.39 0.00 0.00 2.44
1924 2032 7.340999 GTGGGTAATAAAGCTCCTATTTTCCAA 59.659 37.037 15.88 8.38 29.44 3.53
1925 2033 6.831868 GTGGGTAATAAAGCTCCTATTTTCCA 59.168 38.462 6.39 10.34 0.00 3.53
1926 2034 6.264744 GGTGGGTAATAAAGCTCCTATTTTCC 59.735 42.308 6.39 8.88 0.00 3.13
1927 2035 7.061054 AGGTGGGTAATAAAGCTCCTATTTTC 58.939 38.462 6.39 2.48 31.71 2.29
1932 2040 4.892198 AGAGGTGGGTAATAAAGCTCCTA 58.108 43.478 0.00 0.00 38.84 2.94
1934 2042 5.625568 TTAGAGGTGGGTAATAAAGCTCC 57.374 43.478 0.00 0.00 38.84 4.70
1937 2045 7.773690 TCAGATTTTAGAGGTGGGTAATAAAGC 59.226 37.037 0.00 0.00 0.00 3.51
1938 2046 9.331282 CTCAGATTTTAGAGGTGGGTAATAAAG 57.669 37.037 0.00 0.00 0.00 1.85
1939 2047 8.272173 CCTCAGATTTTAGAGGTGGGTAATAAA 58.728 37.037 0.00 0.00 45.08 1.40
1940 2048 7.802117 CCTCAGATTTTAGAGGTGGGTAATAA 58.198 38.462 0.00 0.00 45.08 1.40
1941 2049 7.374975 CCTCAGATTTTAGAGGTGGGTAATA 57.625 40.000 0.00 0.00 45.08 0.98
1974 2082 9.410556 GTTGATGCACATTATATAATTGGTTCC 57.589 33.333 5.18 0.00 0.00 3.62
1978 2086 7.307694 AGCGTTGATGCACATTATATAATTGG 58.692 34.615 5.18 2.56 37.31 3.16
1984 2092 4.511454 ACGAAGCGTTGATGCACATTATAT 59.489 37.500 0.00 0.00 36.35 0.86
2023 2131 5.179555 GCAAATAAACAAACTCGGACTCTCT 59.820 40.000 0.00 0.00 0.00 3.10
2122 2237 5.002516 CAGAACTTCAGAAGCAAGAGGAAT 58.997 41.667 10.33 0.00 0.00 3.01
2225 2340 3.751518 GAGCTTTTTGAGGTCCCTTACA 58.248 45.455 0.00 0.00 45.14 2.41
2629 2746 4.462508 TTAGACAGAGTTGGCTGAGATG 57.537 45.455 0.00 0.00 44.40 2.90
2637 2757 3.997021 GTCACCACATTAGACAGAGTTGG 59.003 47.826 0.00 0.00 32.68 3.77
2640 2760 3.006967 GGTGTCACCACATTAGACAGAGT 59.993 47.826 17.59 0.00 42.36 3.24
2985 3124 7.675062 TGAATAGTTAACTACCCACGGTAAAA 58.325 34.615 17.45 0.00 37.76 1.52
3561 3706 3.831715 ATCGCTAAAGGCACTCAAAAC 57.168 42.857 0.00 0.00 38.49 2.43
3575 3720 7.483307 AGGTTAAAGTTCGTATGTTATCGCTA 58.517 34.615 0.00 0.00 0.00 4.26
3638 3783 4.450082 AAGAAACCGGTAATGCAAATCC 57.550 40.909 8.00 0.00 0.00 3.01
3725 3870 2.538345 AACGATGGTTAGGCACGCAAG 61.538 52.381 0.00 0.00 37.88 4.01
3743 3888 7.745015 TGTTAGTTACAGACAGAAACACAAAC 58.255 34.615 0.00 0.00 31.68 2.93
3859 4004 1.202758 CCAGTGGCCAAGACTACAACA 60.203 52.381 7.24 0.00 0.00 3.33
3937 4090 9.013229 GGAGGATGCAAATACATGTATGAATAA 57.987 33.333 18.94 5.25 0.00 1.40
4205 4359 6.489603 TCAATAGTTCATCCTTGGCCTAAAA 58.510 36.000 3.32 0.00 0.00 1.52
4327 4481 6.091169 CACTGAAATTTTGGAAATGCGCTTAT 59.909 34.615 9.73 0.00 0.00 1.73
4332 4486 3.493877 TGCACTGAAATTTTGGAAATGCG 59.506 39.130 0.00 0.00 33.26 4.73
4403 4559 5.970317 AATTGCTTGAGATCACATGTCAA 57.030 34.783 0.00 13.38 39.83 3.18
4404 4560 5.970317 AAATTGCTTGAGATCACATGTCA 57.030 34.783 0.00 0.00 0.00 3.58
4405 4561 8.804743 CAAATAAATTGCTTGAGATCACATGTC 58.195 33.333 0.00 0.00 31.00 3.06
4406 4562 8.525316 TCAAATAAATTGCTTGAGATCACATGT 58.475 29.630 0.00 0.00 38.98 3.21
4407 4563 8.804743 GTCAAATAAATTGCTTGAGATCACATG 58.195 33.333 0.00 0.00 38.98 3.21
4408 4564 8.525316 TGTCAAATAAATTGCTTGAGATCACAT 58.475 29.630 0.00 0.00 38.98 3.21
4409 4565 7.884257 TGTCAAATAAATTGCTTGAGATCACA 58.116 30.769 0.00 0.00 38.98 3.58
4410 4566 8.804743 CATGTCAAATAAATTGCTTGAGATCAC 58.195 33.333 0.00 0.00 38.98 3.06
4411 4567 8.741841 TCATGTCAAATAAATTGCTTGAGATCA 58.258 29.630 0.00 0.00 38.98 2.92
4412 4568 9.745880 ATCATGTCAAATAAATTGCTTGAGATC 57.254 29.630 0.00 0.00 38.98 2.75
4413 4569 9.745880 GATCATGTCAAATAAATTGCTTGAGAT 57.254 29.630 0.00 2.85 38.98 2.75
4414 4570 8.741841 TGATCATGTCAAATAAATTGCTTGAGA 58.258 29.630 0.00 0.00 38.98 3.27
4415 4571 8.804743 GTGATCATGTCAAATAAATTGCTTGAG 58.195 33.333 0.00 0.00 38.90 3.02
4416 4572 8.305317 TGTGATCATGTCAAATAAATTGCTTGA 58.695 29.630 0.00 0.00 38.90 3.02
4417 4573 8.468720 TGTGATCATGTCAAATAAATTGCTTG 57.531 30.769 0.00 0.00 38.90 4.01
4500 4656 3.729862 TGCAATCAATCAACACAGCAA 57.270 38.095 0.00 0.00 0.00 3.91
4553 4722 3.008375 TCAGCTGGTAAAAGTGATGCTCT 59.992 43.478 15.13 0.00 0.00 4.09
4832 5009 3.033419 TTGCAGCACAGGCAATGTA 57.967 47.368 0.00 0.00 45.57 2.29
4884 5061 2.205022 TCACCAAAATGCTGAGGAGG 57.795 50.000 0.00 0.00 0.00 4.30
4912 5090 2.777494 CATGCATTGCACTTGTACTCG 58.223 47.619 14.66 0.00 43.04 4.18
4924 5102 4.849926 GCAATATTAGAGTCGCATGCATTG 59.150 41.667 19.57 16.22 33.00 2.82
5210 5471 2.243810 CCCTCTATGTAGCCTCCACTC 58.756 57.143 0.00 0.00 0.00 3.51
5214 5475 2.104669 AACCCCTCTATGTAGCCTCC 57.895 55.000 0.00 0.00 0.00 4.30
5271 5532 2.515996 TTTCGGACATCGTCAGGGGC 62.516 60.000 0.00 0.00 40.32 5.80
5275 5536 3.706994 GAAGTTTTCGGACATCGTCAG 57.293 47.619 0.00 0.00 40.32 3.51
5337 5598 1.885887 CAGAGCCGGTTTTCCAAATGA 59.114 47.619 1.90 0.00 40.70 2.57
5383 5644 7.551585 AGTAAGGACTAGTTCATTGTCTCATG 58.448 38.462 3.42 0.00 34.51 3.07
5412 5673 5.357257 TCATCTTTATTAGAGTTGCCGTCC 58.643 41.667 0.00 0.00 36.02 4.79
5417 5678 8.394121 CCTCTGTTTCATCTTTATTAGAGTTGC 58.606 37.037 0.00 0.00 36.02 4.17
5420 5681 9.660180 GTTCCTCTGTTTCATCTTTATTAGAGT 57.340 33.333 0.00 0.00 36.02 3.24
5423 5684 7.549488 ACCGTTCCTCTGTTTCATCTTTATTAG 59.451 37.037 0.00 0.00 0.00 1.73
5466 5727 2.858644 ACACTTCCCCTCATCCCATTA 58.141 47.619 0.00 0.00 0.00 1.90
5470 5731 0.698818 ACAACACTTCCCCTCATCCC 59.301 55.000 0.00 0.00 0.00 3.85
5603 5864 2.681848 GGTCAGGTCGACGATTAAGAGA 59.318 50.000 9.92 0.00 46.42 3.10
5624 5885 6.618287 TTGCCTGTATATCTTCATTTTCCG 57.382 37.500 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.