Multiple sequence alignment - TraesCS6D01G053900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G053900 chr6D 100.000 3223 0 0 1 3223 25730684 25733906 0.000000e+00 5952
1 TraesCS6D01G053900 chr6D 94.757 2613 88 18 638 3223 420171217 420173807 0.000000e+00 4021
2 TraesCS6D01G053900 chr6D 89.206 315 19 8 638 939 420179046 420178734 2.350000e-101 379
3 TraesCS6D01G053900 chr4D 95.254 2613 80 12 638 3223 491381490 491384085 0.000000e+00 4098
4 TraesCS6D01G053900 chr4D 89.967 1515 111 28 865 2368 477884173 477882689 0.000000e+00 1917
5 TraesCS6D01G053900 chr4D 85.455 330 15 5 638 936 491389065 491388738 2.410000e-81 313
6 TraesCS6D01G053900 chr3D 95.180 2614 82 12 637 3223 334132 336728 0.000000e+00 4089
7 TraesCS6D01G053900 chr3D 89.207 1955 139 34 638 2548 383173067 383171141 0.000000e+00 2375
8 TraesCS6D01G053900 chr3D 88.681 1767 134 29 638 2368 149758703 149760439 0.000000e+00 2095
9 TraesCS6D01G053900 chr3D 88.615 325 11 9 638 939 341939 341618 3.930000e-99 372
10 TraesCS6D01G053900 chr3D 87.539 321 15 11 638 939 455035090 455034776 6.620000e-92 348
11 TraesCS6D01G053900 chr1D 95.178 2613 81 12 638 3223 316243968 316241374 0.000000e+00 4085
12 TraesCS6D01G053900 chr1D 78.402 676 97 32 638 1295 392721393 392720749 8.380000e-106 394
13 TraesCS6D01G053900 chr2D 95.057 2610 84 13 638 3220 617340745 617343336 0.000000e+00 4063
14 TraesCS6D01G053900 chr2D 94.996 2618 80 14 638 3223 130079133 130076535 0.000000e+00 4061
15 TraesCS6D01G053900 chr2D 88.615 325 11 7 635 936 130071328 130071649 3.930000e-99 372
16 TraesCS6D01G053900 chr5A 94.967 2603 94 15 638 3223 666200505 666197923 0.000000e+00 4047
17 TraesCS6D01G053900 chr7D 94.234 2619 84 20 636 3223 586698692 586696110 0.000000e+00 3938
18 TraesCS6D01G053900 chr6B 92.055 2618 158 25 638 3223 630833944 630831345 0.000000e+00 3637
19 TraesCS6D01G053900 chr6B 88.065 620 58 8 1 618 41921199 41921804 0.000000e+00 721
20 TraesCS6D01G053900 chr6B 83.333 606 63 19 638 1215 142984893 142984298 2.850000e-145 525
21 TraesCS6D01G053900 chr7B 92.193 2613 137 24 635 3223 619623945 619626514 0.000000e+00 3633
22 TraesCS6D01G053900 chr7B 92.180 2404 120 21 638 3013 672859561 672857198 0.000000e+00 3336
23 TraesCS6D01G053900 chr7B 91.022 1938 126 20 638 2547 730310146 730312063 0.000000e+00 2571
24 TraesCS6D01G053900 chr7B 89.302 1103 72 17 638 1714 156416779 156415697 0.000000e+00 1341
25 TraesCS6D01G053900 chr4A 94.492 1289 56 3 638 1913 731191683 731190397 0.000000e+00 1973
26 TraesCS6D01G053900 chr4A 86.769 325 17 8 637 939 731156381 731156701 3.980000e-89 339
27 TraesCS6D01G053900 chr1A 84.350 1968 211 54 635 2547 542356303 542354378 0.000000e+00 1838
28 TraesCS6D01G053900 chr5D 94.972 1054 29 6 637 1675 27863078 27864122 0.000000e+00 1631
29 TraesCS6D01G053900 chr5D 89.103 312 17 7 638 936 78595158 78595465 3.930000e-99 372
30 TraesCS6D01G053900 chr5D 86.769 325 19 7 637 939 555421272 555420950 1.110000e-89 340
31 TraesCS6D01G053900 chr5D 86.916 321 18 11 638 939 27883434 27883119 3.980000e-89 339
32 TraesCS6D01G053900 chr2A 81.857 1422 197 45 863 2264 773340805 773339425 0.000000e+00 1140
33 TraesCS6D01G053900 chr7A 92.089 809 34 7 630 1409 70265619 70264812 0.000000e+00 1112
34 TraesCS6D01G053900 chr6A 87.907 645 59 11 1 640 23852040 23852670 0.000000e+00 741
35 TraesCS6D01G053900 chr3B 95.312 64 3 0 638 701 697971682 697971745 5.690000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G053900 chr6D 25730684 25733906 3222 False 5952 5952 100.000 1 3223 1 chr6D.!!$F1 3222
1 TraesCS6D01G053900 chr6D 420171217 420173807 2590 False 4021 4021 94.757 638 3223 1 chr6D.!!$F2 2585
2 TraesCS6D01G053900 chr4D 491381490 491384085 2595 False 4098 4098 95.254 638 3223 1 chr4D.!!$F1 2585
3 TraesCS6D01G053900 chr4D 477882689 477884173 1484 True 1917 1917 89.967 865 2368 1 chr4D.!!$R1 1503
4 TraesCS6D01G053900 chr3D 334132 336728 2596 False 4089 4089 95.180 637 3223 1 chr3D.!!$F1 2586
5 TraesCS6D01G053900 chr3D 383171141 383173067 1926 True 2375 2375 89.207 638 2548 1 chr3D.!!$R2 1910
6 TraesCS6D01G053900 chr3D 149758703 149760439 1736 False 2095 2095 88.681 638 2368 1 chr3D.!!$F2 1730
7 TraesCS6D01G053900 chr1D 316241374 316243968 2594 True 4085 4085 95.178 638 3223 1 chr1D.!!$R1 2585
8 TraesCS6D01G053900 chr1D 392720749 392721393 644 True 394 394 78.402 638 1295 1 chr1D.!!$R2 657
9 TraesCS6D01G053900 chr2D 617340745 617343336 2591 False 4063 4063 95.057 638 3220 1 chr2D.!!$F2 2582
10 TraesCS6D01G053900 chr2D 130076535 130079133 2598 True 4061 4061 94.996 638 3223 1 chr2D.!!$R1 2585
11 TraesCS6D01G053900 chr5A 666197923 666200505 2582 True 4047 4047 94.967 638 3223 1 chr5A.!!$R1 2585
12 TraesCS6D01G053900 chr7D 586696110 586698692 2582 True 3938 3938 94.234 636 3223 1 chr7D.!!$R1 2587
13 TraesCS6D01G053900 chr6B 630831345 630833944 2599 True 3637 3637 92.055 638 3223 1 chr6B.!!$R2 2585
14 TraesCS6D01G053900 chr6B 41921199 41921804 605 False 721 721 88.065 1 618 1 chr6B.!!$F1 617
15 TraesCS6D01G053900 chr6B 142984298 142984893 595 True 525 525 83.333 638 1215 1 chr6B.!!$R1 577
16 TraesCS6D01G053900 chr7B 619623945 619626514 2569 False 3633 3633 92.193 635 3223 1 chr7B.!!$F1 2588
17 TraesCS6D01G053900 chr7B 672857198 672859561 2363 True 3336 3336 92.180 638 3013 1 chr7B.!!$R2 2375
18 TraesCS6D01G053900 chr7B 730310146 730312063 1917 False 2571 2571 91.022 638 2547 1 chr7B.!!$F2 1909
19 TraesCS6D01G053900 chr7B 156415697 156416779 1082 True 1341 1341 89.302 638 1714 1 chr7B.!!$R1 1076
20 TraesCS6D01G053900 chr4A 731190397 731191683 1286 True 1973 1973 94.492 638 1913 1 chr4A.!!$R1 1275
21 TraesCS6D01G053900 chr1A 542354378 542356303 1925 True 1838 1838 84.350 635 2547 1 chr1A.!!$R1 1912
22 TraesCS6D01G053900 chr5D 27863078 27864122 1044 False 1631 1631 94.972 637 1675 1 chr5D.!!$F1 1038
23 TraesCS6D01G053900 chr2A 773339425 773340805 1380 True 1140 1140 81.857 863 2264 1 chr2A.!!$R1 1401
24 TraesCS6D01G053900 chr7A 70264812 70265619 807 True 1112 1112 92.089 630 1409 1 chr7A.!!$R1 779
25 TraesCS6D01G053900 chr6A 23852040 23852670 630 False 741 741 87.907 1 640 1 chr6A.!!$F1 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 338 0.178301 TGGTTGGGTTATGCGCGATA 59.822 50.000 12.10 1.74 0.00 2.92 F
630 631 0.251165 ACCTACATGGCAAAAGCCGT 60.251 50.000 0.00 0.00 40.22 5.68 F
631 632 1.003812 ACCTACATGGCAAAAGCCGTA 59.996 47.619 0.19 0.00 40.22 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1325 1400 0.387622 CAGTGCCTTCAAATGCCACG 60.388 55.000 0.00 0.0 0.00 4.94 R
2066 2186 0.463620 TGGCCTTCCTTGTGTTTTGC 59.536 50.000 3.32 0.0 0.00 3.68 R
2228 2352 6.956435 TCATATATACTGACCATCCAGAGCTT 59.044 38.462 0.00 0.0 37.59 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.006967 ACACTAGCCGAGAAGACAATTGT 59.993 43.478 11.78 11.78 0.00 2.71
60 61 7.702348 AGACAATTGTAGCTTTGTTTCAAGAAC 59.298 33.333 11.95 0.00 36.25 3.01
61 62 7.547227 ACAATTGTAGCTTTGTTTCAAGAACT 58.453 30.769 9.97 0.00 32.28 3.01
62 63 7.489113 ACAATTGTAGCTTTGTTTCAAGAACTG 59.511 33.333 9.97 0.00 32.28 3.16
63 64 6.751514 TTGTAGCTTTGTTTCAAGAACTGA 57.248 33.333 0.00 0.00 0.00 3.41
64 65 6.942532 TGTAGCTTTGTTTCAAGAACTGAT 57.057 33.333 0.00 0.00 32.78 2.90
65 66 6.728200 TGTAGCTTTGTTTCAAGAACTGATG 58.272 36.000 0.00 0.00 32.78 3.07
66 67 6.542005 TGTAGCTTTGTTTCAAGAACTGATGA 59.458 34.615 0.00 0.00 32.78 2.92
67 68 6.645790 AGCTTTGTTTCAAGAACTGATGAT 57.354 33.333 0.00 0.00 32.78 2.45
68 69 6.444633 AGCTTTGTTTCAAGAACTGATGATG 58.555 36.000 0.00 0.00 32.78 3.07
69 70 5.118203 GCTTTGTTTCAAGAACTGATGATGC 59.882 40.000 0.00 0.00 32.78 3.91
70 71 5.771153 TTGTTTCAAGAACTGATGATGCA 57.229 34.783 0.00 0.00 32.78 3.96
71 72 5.771153 TGTTTCAAGAACTGATGATGCAA 57.229 34.783 0.00 0.00 32.78 4.08
72 73 6.146601 TGTTTCAAGAACTGATGATGCAAA 57.853 33.333 0.00 0.00 32.78 3.68
73 74 6.571605 TGTTTCAAGAACTGATGATGCAAAA 58.428 32.000 0.00 0.00 32.78 2.44
74 75 6.698329 TGTTTCAAGAACTGATGATGCAAAAG 59.302 34.615 0.00 0.00 32.78 2.27
75 76 6.395426 TTCAAGAACTGATGATGCAAAAGT 57.605 33.333 0.00 0.00 32.78 2.66
76 77 5.765176 TCAAGAACTGATGATGCAAAAGTG 58.235 37.500 0.00 0.00 0.00 3.16
77 78 7.226571 TTCAAGAACTGATGATGCAAAAGTGC 61.227 38.462 0.00 0.00 41.92 4.40
129 130 8.819643 AAGTTAGTTAGTTTCTCTAGCTTGTG 57.180 34.615 0.00 0.00 40.01 3.33
130 131 6.869388 AGTTAGTTAGTTTCTCTAGCTTGTGC 59.131 38.462 0.00 0.00 40.01 4.57
131 132 5.215252 AGTTAGTTTCTCTAGCTTGTGCA 57.785 39.130 0.00 0.00 36.96 4.57
132 133 5.799213 AGTTAGTTTCTCTAGCTTGTGCAT 58.201 37.500 0.00 0.00 36.96 3.96
133 134 5.641209 AGTTAGTTTCTCTAGCTTGTGCATG 59.359 40.000 0.00 0.00 36.96 4.06
134 135 2.746362 AGTTTCTCTAGCTTGTGCATGC 59.254 45.455 11.82 11.82 42.74 4.06
135 136 2.477845 TTCTCTAGCTTGTGCATGCA 57.522 45.000 18.46 18.46 42.74 3.96
136 137 1.730501 TCTCTAGCTTGTGCATGCAC 58.269 50.000 38.00 38.00 46.33 4.57
144 145 4.248402 GTGCATGCACGCAATTGT 57.752 50.000 33.20 0.00 45.14 2.71
145 146 1.776580 GTGCATGCACGCAATTGTG 59.223 52.632 33.20 17.32 45.14 3.33
146 147 0.940519 GTGCATGCACGCAATTGTGT 60.941 50.000 33.20 18.77 45.14 3.72
147 148 0.249363 TGCATGCACGCAATTGTGTT 60.249 45.000 21.69 5.44 41.94 3.32
148 149 0.860533 GCATGCACGCAATTGTGTTT 59.139 45.000 21.69 7.45 41.94 2.83
149 150 1.136557 GCATGCACGCAATTGTGTTTC 60.137 47.619 21.69 16.07 41.94 2.78
150 151 2.396601 CATGCACGCAATTGTGTTTCT 58.603 42.857 21.69 6.59 41.94 2.52
151 152 1.837648 TGCACGCAATTGTGTTTCTG 58.162 45.000 21.69 11.83 41.94 3.02
152 153 1.133982 TGCACGCAATTGTGTTTCTGT 59.866 42.857 21.69 0.00 41.94 3.41
153 154 2.192624 GCACGCAATTGTGTTTCTGTT 58.807 42.857 21.69 0.00 41.94 3.16
154 155 2.602660 GCACGCAATTGTGTTTCTGTTT 59.397 40.909 21.69 0.00 41.94 2.83
155 156 3.061965 GCACGCAATTGTGTTTCTGTTTT 59.938 39.130 21.69 0.00 41.94 2.43
156 157 4.435386 GCACGCAATTGTGTTTCTGTTTTT 60.435 37.500 21.69 0.00 41.94 1.94
157 158 5.014483 CACGCAATTGTGTTTCTGTTTTTG 58.986 37.500 21.69 3.44 36.50 2.44
158 159 4.688413 ACGCAATTGTGTTTCTGTTTTTGT 59.312 33.333 18.77 0.00 34.75 2.83
159 160 5.014483 CGCAATTGTGTTTCTGTTTTTGTG 58.986 37.500 10.93 0.00 0.00 3.33
160 161 4.787591 GCAATTGTGTTTCTGTTTTTGTGC 59.212 37.500 7.40 0.00 0.00 4.57
161 162 4.838665 ATTGTGTTTCTGTTTTTGTGCG 57.161 36.364 0.00 0.00 0.00 5.34
162 163 2.600731 TGTGTTTCTGTTTTTGTGCGG 58.399 42.857 0.00 0.00 0.00 5.69
163 164 2.229062 TGTGTTTCTGTTTTTGTGCGGA 59.771 40.909 0.00 0.00 0.00 5.54
164 165 3.119316 TGTGTTTCTGTTTTTGTGCGGAT 60.119 39.130 0.00 0.00 0.00 4.18
165 166 3.242712 GTGTTTCTGTTTTTGTGCGGATG 59.757 43.478 0.00 0.00 0.00 3.51
166 167 3.119316 TGTTTCTGTTTTTGTGCGGATGT 60.119 39.130 0.00 0.00 0.00 3.06
167 168 3.791973 TTCTGTTTTTGTGCGGATGTT 57.208 38.095 0.00 0.00 0.00 2.71
168 169 4.902443 TTCTGTTTTTGTGCGGATGTTA 57.098 36.364 0.00 0.00 0.00 2.41
169 170 4.481930 TCTGTTTTTGTGCGGATGTTAG 57.518 40.909 0.00 0.00 0.00 2.34
170 171 4.130857 TCTGTTTTTGTGCGGATGTTAGA 58.869 39.130 0.00 0.00 0.00 2.10
171 172 4.024387 TCTGTTTTTGTGCGGATGTTAGAC 60.024 41.667 0.00 0.00 0.00 2.59
172 173 3.880490 TGTTTTTGTGCGGATGTTAGACT 59.120 39.130 0.00 0.00 0.00 3.24
173 174 4.336993 TGTTTTTGTGCGGATGTTAGACTT 59.663 37.500 0.00 0.00 0.00 3.01
174 175 4.481930 TTTTGTGCGGATGTTAGACTTG 57.518 40.909 0.00 0.00 0.00 3.16
175 176 2.093306 TGTGCGGATGTTAGACTTGG 57.907 50.000 0.00 0.00 0.00 3.61
176 177 1.621317 TGTGCGGATGTTAGACTTGGA 59.379 47.619 0.00 0.00 0.00 3.53
177 178 2.236146 TGTGCGGATGTTAGACTTGGAT 59.764 45.455 0.00 0.00 0.00 3.41
178 179 3.449377 TGTGCGGATGTTAGACTTGGATA 59.551 43.478 0.00 0.00 0.00 2.59
179 180 4.100963 TGTGCGGATGTTAGACTTGGATAT 59.899 41.667 0.00 0.00 0.00 1.63
180 181 4.449068 GTGCGGATGTTAGACTTGGATATG 59.551 45.833 0.00 0.00 0.00 1.78
181 182 3.997021 GCGGATGTTAGACTTGGATATGG 59.003 47.826 0.00 0.00 0.00 2.74
182 183 4.569943 CGGATGTTAGACTTGGATATGGG 58.430 47.826 0.00 0.00 0.00 4.00
183 184 4.327680 GGATGTTAGACTTGGATATGGGC 58.672 47.826 0.00 0.00 0.00 5.36
184 185 4.042187 GGATGTTAGACTTGGATATGGGCT 59.958 45.833 0.00 0.00 0.00 5.19
185 186 5.248477 GGATGTTAGACTTGGATATGGGCTA 59.752 44.000 0.00 0.00 0.00 3.93
186 187 5.546621 TGTTAGACTTGGATATGGGCTAC 57.453 43.478 0.00 0.00 0.00 3.58
187 188 4.347000 TGTTAGACTTGGATATGGGCTACC 59.653 45.833 0.00 0.00 37.24 3.18
188 189 3.352611 AGACTTGGATATGGGCTACCT 57.647 47.619 0.00 0.00 37.76 3.08
189 190 3.669949 AGACTTGGATATGGGCTACCTT 58.330 45.455 0.00 0.00 37.76 3.50
190 191 3.648545 AGACTTGGATATGGGCTACCTTC 59.351 47.826 0.00 0.00 37.76 3.46
191 192 3.391296 GACTTGGATATGGGCTACCTTCA 59.609 47.826 0.00 0.00 37.76 3.02
192 193 3.983410 ACTTGGATATGGGCTACCTTCAT 59.017 43.478 0.00 0.00 37.76 2.57
193 194 4.042187 ACTTGGATATGGGCTACCTTCATC 59.958 45.833 0.00 0.00 37.76 2.92
194 195 3.874316 TGGATATGGGCTACCTTCATCT 58.126 45.455 0.00 0.00 37.76 2.90
195 196 5.023514 TGGATATGGGCTACCTTCATCTA 57.976 43.478 0.00 0.00 37.76 1.98
196 197 4.777896 TGGATATGGGCTACCTTCATCTAC 59.222 45.833 0.00 0.00 37.76 2.59
197 198 4.777896 GGATATGGGCTACCTTCATCTACA 59.222 45.833 0.00 0.00 37.76 2.74
198 199 5.426833 GGATATGGGCTACCTTCATCTACAT 59.573 44.000 0.00 0.00 37.76 2.29
199 200 6.069963 GGATATGGGCTACCTTCATCTACATT 60.070 42.308 0.00 0.00 37.76 2.71
200 201 5.653255 ATGGGCTACCTTCATCTACATTT 57.347 39.130 0.00 0.00 37.76 2.32
201 202 5.450818 TGGGCTACCTTCATCTACATTTT 57.549 39.130 0.00 0.00 37.76 1.82
202 203 6.569127 TGGGCTACCTTCATCTACATTTTA 57.431 37.500 0.00 0.00 37.76 1.52
203 204 6.591935 TGGGCTACCTTCATCTACATTTTAG 58.408 40.000 0.00 0.00 37.76 1.85
204 205 6.385759 TGGGCTACCTTCATCTACATTTTAGA 59.614 38.462 0.00 0.00 37.76 2.10
205 206 6.931840 GGGCTACCTTCATCTACATTTTAGAG 59.068 42.308 0.00 0.00 0.00 2.43
206 207 7.202011 GGGCTACCTTCATCTACATTTTAGAGA 60.202 40.741 0.00 0.00 0.00 3.10
207 208 8.371699 GGCTACCTTCATCTACATTTTAGAGAT 58.628 37.037 0.00 0.00 0.00 2.75
211 212 9.440761 ACCTTCATCTACATTTTAGAGATAGGT 57.559 33.333 0.00 0.00 0.00 3.08
221 222 8.145122 ACATTTTAGAGATAGGTTAGCTAGTGC 58.855 37.037 0.00 0.00 40.05 4.40
234 235 3.694535 GCTAGTGCTCGTGTATGTACT 57.305 47.619 0.00 0.00 36.03 2.73
235 236 3.619729 GCTAGTGCTCGTGTATGTACTC 58.380 50.000 0.00 0.00 36.03 2.59
236 237 3.064958 GCTAGTGCTCGTGTATGTACTCA 59.935 47.826 0.00 0.00 36.03 3.41
237 238 3.766676 AGTGCTCGTGTATGTACTCAG 57.233 47.619 0.00 0.00 0.00 3.35
238 239 3.344515 AGTGCTCGTGTATGTACTCAGA 58.655 45.455 0.00 0.00 0.00 3.27
239 240 3.127203 AGTGCTCGTGTATGTACTCAGAC 59.873 47.826 0.00 0.00 36.46 3.51
240 241 3.127203 GTGCTCGTGTATGTACTCAGACT 59.873 47.826 0.00 0.00 36.81 3.24
241 242 3.374367 TGCTCGTGTATGTACTCAGACTC 59.626 47.826 0.00 0.00 36.81 3.36
242 243 3.242804 GCTCGTGTATGTACTCAGACTCC 60.243 52.174 0.00 0.00 36.81 3.85
243 244 3.276857 TCGTGTATGTACTCAGACTCCC 58.723 50.000 0.00 0.00 36.81 4.30
244 245 2.358267 CGTGTATGTACTCAGACTCCCC 59.642 54.545 0.00 0.00 36.81 4.81
245 246 2.694109 GTGTATGTACTCAGACTCCCCC 59.306 54.545 0.00 0.00 36.81 5.40
246 247 2.313643 TGTATGTACTCAGACTCCCCCA 59.686 50.000 0.00 0.00 36.81 4.96
247 248 2.642171 ATGTACTCAGACTCCCCCAA 57.358 50.000 0.00 0.00 0.00 4.12
248 249 1.938585 TGTACTCAGACTCCCCCAAG 58.061 55.000 0.00 0.00 0.00 3.61
249 250 1.149288 TGTACTCAGACTCCCCCAAGT 59.851 52.381 0.00 0.00 0.00 3.16
250 251 2.380932 TGTACTCAGACTCCCCCAAGTA 59.619 50.000 0.00 0.00 0.00 2.24
251 252 2.239681 ACTCAGACTCCCCCAAGTAG 57.760 55.000 0.00 0.00 0.00 2.57
252 253 1.273324 ACTCAGACTCCCCCAAGTAGG 60.273 57.143 0.00 0.00 37.03 3.18
253 254 0.790993 TCAGACTCCCCCAAGTAGGT 59.209 55.000 0.00 0.00 34.66 3.08
254 255 0.905357 CAGACTCCCCCAAGTAGGTG 59.095 60.000 0.00 0.00 34.66 4.00
255 256 0.492276 AGACTCCCCCAAGTAGGTGT 59.508 55.000 0.00 0.00 34.66 4.16
256 257 1.132495 AGACTCCCCCAAGTAGGTGTT 60.132 52.381 0.00 0.00 34.66 3.32
257 258 1.003233 GACTCCCCCAAGTAGGTGTTG 59.997 57.143 0.00 0.00 34.66 3.33
258 259 1.358152 CTCCCCCAAGTAGGTGTTGA 58.642 55.000 0.00 0.00 34.66 3.18
259 260 1.916181 CTCCCCCAAGTAGGTGTTGAT 59.084 52.381 0.00 0.00 34.66 2.57
260 261 2.308866 CTCCCCCAAGTAGGTGTTGATT 59.691 50.000 0.00 0.00 34.66 2.57
261 262 3.521937 CTCCCCCAAGTAGGTGTTGATTA 59.478 47.826 0.00 0.00 34.66 1.75
262 263 3.264964 TCCCCCAAGTAGGTGTTGATTAC 59.735 47.826 0.00 0.00 34.66 1.89
263 264 3.009695 CCCCCAAGTAGGTGTTGATTACA 59.990 47.826 0.00 0.00 34.66 2.41
264 265 4.325030 CCCCCAAGTAGGTGTTGATTACAT 60.325 45.833 0.00 0.00 39.39 2.29
265 266 4.881850 CCCCAAGTAGGTGTTGATTACATC 59.118 45.833 0.00 0.00 39.39 3.06
266 267 5.496556 CCCAAGTAGGTGTTGATTACATCA 58.503 41.667 0.00 0.00 40.53 3.07
267 268 6.122277 CCCAAGTAGGTGTTGATTACATCAT 58.878 40.000 0.00 0.00 40.53 2.45
268 269 6.038603 CCCAAGTAGGTGTTGATTACATCATG 59.961 42.308 0.00 0.00 40.53 3.07
269 270 6.038603 CCAAGTAGGTGTTGATTACATCATGG 59.961 42.308 0.00 0.00 40.53 3.66
270 271 5.126067 AGTAGGTGTTGATTACATCATGGC 58.874 41.667 0.00 0.00 40.53 4.40
271 272 3.966979 AGGTGTTGATTACATCATGGCA 58.033 40.909 0.00 0.00 40.53 4.92
272 273 4.343231 AGGTGTTGATTACATCATGGCAA 58.657 39.130 0.00 0.00 40.53 4.52
273 274 4.957954 AGGTGTTGATTACATCATGGCAAT 59.042 37.500 0.00 0.00 40.53 3.56
274 275 5.422970 AGGTGTTGATTACATCATGGCAATT 59.577 36.000 0.00 0.00 40.53 2.32
275 276 6.070653 AGGTGTTGATTACATCATGGCAATTT 60.071 34.615 0.00 0.00 40.53 1.82
276 277 6.036300 GGTGTTGATTACATCATGGCAATTTG 59.964 38.462 0.00 0.00 37.82 2.32
277 278 6.591062 GTGTTGATTACATCATGGCAATTTGT 59.409 34.615 0.00 0.00 39.39 2.83
278 279 7.118101 GTGTTGATTACATCATGGCAATTTGTT 59.882 33.333 0.00 0.00 39.39 2.83
279 280 7.331440 TGTTGATTACATCATGGCAATTTGTTC 59.669 33.333 0.00 0.00 39.39 3.18
280 281 6.932947 TGATTACATCATGGCAATTTGTTCA 58.067 32.000 0.00 0.00 33.59 3.18
281 282 7.557724 TGATTACATCATGGCAATTTGTTCAT 58.442 30.769 0.00 0.64 33.59 2.57
282 283 8.041919 TGATTACATCATGGCAATTTGTTCATT 58.958 29.630 0.00 0.00 33.59 2.57
283 284 8.795842 ATTACATCATGGCAATTTGTTCATTT 57.204 26.923 0.00 0.00 0.00 2.32
284 285 6.730960 ACATCATGGCAATTTGTTCATTTC 57.269 33.333 0.00 0.00 0.00 2.17
285 286 5.349270 ACATCATGGCAATTTGTTCATTTCG 59.651 36.000 0.00 0.00 0.00 3.46
286 287 5.131594 TCATGGCAATTTGTTCATTTCGA 57.868 34.783 0.00 0.00 0.00 3.71
287 288 4.922692 TCATGGCAATTTGTTCATTTCGAC 59.077 37.500 0.00 0.00 0.00 4.20
288 289 4.313277 TGGCAATTTGTTCATTTCGACA 57.687 36.364 0.00 0.00 0.00 4.35
289 290 4.297510 TGGCAATTTGTTCATTTCGACAG 58.702 39.130 0.00 0.00 0.00 3.51
290 291 4.037327 TGGCAATTTGTTCATTTCGACAGA 59.963 37.500 0.00 0.00 0.00 3.41
291 292 4.382754 GGCAATTTGTTCATTTCGACAGAC 59.617 41.667 0.00 0.00 0.00 3.51
292 293 5.215160 GCAATTTGTTCATTTCGACAGACT 58.785 37.500 0.00 0.00 0.00 3.24
293 294 5.116074 GCAATTTGTTCATTTCGACAGACTG 59.884 40.000 0.00 0.00 0.00 3.51
294 295 6.201517 CAATTTGTTCATTTCGACAGACTGT 58.798 36.000 8.12 8.12 0.00 3.55
295 296 5.403897 TTTGTTCATTTCGACAGACTGTC 57.596 39.130 23.28 23.28 43.65 3.51
306 307 2.932614 GACAGACTGTCATTTGATCCGG 59.067 50.000 27.15 0.00 46.22 5.14
307 308 2.283298 CAGACTGTCATTTGATCCGGG 58.717 52.381 10.88 0.00 0.00 5.73
308 309 1.210478 AGACTGTCATTTGATCCGGGG 59.790 52.381 10.88 0.00 0.00 5.73
309 310 1.209504 GACTGTCATTTGATCCGGGGA 59.790 52.381 0.00 0.00 0.00 4.81
310 311 1.633432 ACTGTCATTTGATCCGGGGAA 59.367 47.619 0.00 0.00 0.00 3.97
311 312 2.242196 ACTGTCATTTGATCCGGGGAAT 59.758 45.455 0.00 0.00 0.00 3.01
312 313 3.290710 CTGTCATTTGATCCGGGGAATT 58.709 45.455 0.00 0.00 0.00 2.17
313 314 3.701040 CTGTCATTTGATCCGGGGAATTT 59.299 43.478 0.00 0.00 0.00 1.82
314 315 3.699038 TGTCATTTGATCCGGGGAATTTC 59.301 43.478 0.00 0.00 0.00 2.17
315 316 3.954258 GTCATTTGATCCGGGGAATTTCT 59.046 43.478 0.00 0.00 0.00 2.52
316 317 4.036852 GTCATTTGATCCGGGGAATTTCTC 59.963 45.833 0.00 0.00 0.00 2.87
317 318 4.079787 TCATTTGATCCGGGGAATTTCTCT 60.080 41.667 0.00 0.00 0.00 3.10
318 319 4.316025 TTTGATCCGGGGAATTTCTCTT 57.684 40.909 0.00 0.00 0.00 2.85
319 320 3.281727 TGATCCGGGGAATTTCTCTTG 57.718 47.619 0.00 0.00 0.00 3.02
320 321 2.092429 TGATCCGGGGAATTTCTCTTGG 60.092 50.000 0.00 0.00 0.00 3.61
321 322 1.368374 TCCGGGGAATTTCTCTTGGT 58.632 50.000 0.00 0.00 0.00 3.67
322 323 1.708551 TCCGGGGAATTTCTCTTGGTT 59.291 47.619 0.00 0.00 0.00 3.67
323 324 1.818674 CCGGGGAATTTCTCTTGGTTG 59.181 52.381 0.00 0.00 0.00 3.77
324 325 1.818674 CGGGGAATTTCTCTTGGTTGG 59.181 52.381 0.00 0.00 0.00 3.77
325 326 2.179427 GGGGAATTTCTCTTGGTTGGG 58.821 52.381 0.00 0.00 0.00 4.12
326 327 2.492753 GGGGAATTTCTCTTGGTTGGGT 60.493 50.000 0.00 0.00 0.00 4.51
327 328 3.239449 GGGAATTTCTCTTGGTTGGGTT 58.761 45.455 0.00 0.00 0.00 4.11
328 329 4.412843 GGGAATTTCTCTTGGTTGGGTTA 58.587 43.478 0.00 0.00 0.00 2.85
329 330 5.023452 GGGAATTTCTCTTGGTTGGGTTAT 58.977 41.667 0.00 0.00 0.00 1.89
330 331 5.105351 GGGAATTTCTCTTGGTTGGGTTATG 60.105 44.000 0.00 0.00 0.00 1.90
331 332 5.405935 AATTTCTCTTGGTTGGGTTATGC 57.594 39.130 0.00 0.00 0.00 3.14
332 333 2.107950 TCTCTTGGTTGGGTTATGCG 57.892 50.000 0.00 0.00 0.00 4.73
333 334 0.451783 CTCTTGGTTGGGTTATGCGC 59.548 55.000 0.00 0.00 0.00 6.09
334 335 1.136565 CTTGGTTGGGTTATGCGCG 59.863 57.895 0.00 0.00 0.00 6.86
335 336 1.302383 CTTGGTTGGGTTATGCGCGA 61.302 55.000 12.10 0.00 0.00 5.87
336 337 0.678366 TTGGTTGGGTTATGCGCGAT 60.678 50.000 12.10 2.89 0.00 4.58
337 338 0.178301 TGGTTGGGTTATGCGCGATA 59.822 50.000 12.10 1.74 0.00 2.92
338 339 0.865769 GGTTGGGTTATGCGCGATAG 59.134 55.000 12.10 0.00 0.00 2.08
356 357 6.300354 CGATAGCCAAATTTATCGTTTCCT 57.700 37.500 11.28 0.00 42.10 3.36
357 358 7.416154 CGATAGCCAAATTTATCGTTTCCTA 57.584 36.000 11.28 0.00 42.10 2.94
358 359 7.857569 CGATAGCCAAATTTATCGTTTCCTAA 58.142 34.615 11.28 0.00 42.10 2.69
359 360 8.339714 CGATAGCCAAATTTATCGTTTCCTAAA 58.660 33.333 11.28 0.00 42.10 1.85
363 364 9.719355 AGCCAAATTTATCGTTTCCTAAAAATT 57.281 25.926 0.00 0.00 0.00 1.82
364 365 9.967245 GCCAAATTTATCGTTTCCTAAAAATTC 57.033 29.630 0.00 0.00 0.00 2.17
373 374 8.671384 TCGTTTCCTAAAAATTCTGAGAAAGA 57.329 30.769 0.00 0.00 0.00 2.52
386 387 7.986085 TTCTGAGAAAGAAAAGGGTTATCAG 57.014 36.000 0.00 0.00 42.09 2.90
387 388 6.476378 TCTGAGAAAGAAAAGGGTTATCAGG 58.524 40.000 7.25 0.00 39.77 3.86
388 389 5.570320 TGAGAAAGAAAAGGGTTATCAGGG 58.430 41.667 0.00 0.00 0.00 4.45
389 390 5.074515 TGAGAAAGAAAAGGGTTATCAGGGT 59.925 40.000 0.00 0.00 0.00 4.34
390 391 5.325239 AGAAAGAAAAGGGTTATCAGGGTG 58.675 41.667 0.00 0.00 0.00 4.61
391 392 3.739401 AGAAAAGGGTTATCAGGGTGG 57.261 47.619 0.00 0.00 0.00 4.61
392 393 2.100197 GAAAAGGGTTATCAGGGTGGC 58.900 52.381 0.00 0.00 0.00 5.01
393 394 1.080638 AAAGGGTTATCAGGGTGGCA 58.919 50.000 0.00 0.00 0.00 4.92
394 395 0.331616 AAGGGTTATCAGGGTGGCAC 59.668 55.000 9.70 9.70 0.00 5.01
395 396 1.076995 GGGTTATCAGGGTGGCACC 60.077 63.158 28.69 28.69 37.60 5.01
408 409 4.344865 GCACCCCCGAAGCAGGAA 62.345 66.667 0.00 0.00 0.00 3.36
409 410 2.359975 CACCCCCGAAGCAGGAAC 60.360 66.667 0.00 0.00 0.00 3.62
410 411 2.852075 ACCCCCGAAGCAGGAACA 60.852 61.111 0.00 0.00 0.00 3.18
411 412 2.231380 ACCCCCGAAGCAGGAACAT 61.231 57.895 0.00 0.00 0.00 2.71
412 413 1.000896 CCCCCGAAGCAGGAACATT 60.001 57.895 0.00 0.00 0.00 2.71
413 414 1.315257 CCCCCGAAGCAGGAACATTG 61.315 60.000 0.00 0.00 0.00 2.82
414 415 0.322456 CCCCGAAGCAGGAACATTGA 60.322 55.000 0.00 0.00 0.00 2.57
415 416 1.533625 CCCGAAGCAGGAACATTGAA 58.466 50.000 0.00 0.00 0.00 2.69
416 417 1.470098 CCCGAAGCAGGAACATTGAAG 59.530 52.381 0.00 0.00 0.00 3.02
417 418 1.135575 CCGAAGCAGGAACATTGAAGC 60.136 52.381 0.00 0.00 0.00 3.86
418 419 1.536766 CGAAGCAGGAACATTGAAGCA 59.463 47.619 0.00 0.00 0.00 3.91
419 420 2.666619 CGAAGCAGGAACATTGAAGCAC 60.667 50.000 0.00 0.00 0.00 4.40
420 421 2.283145 AGCAGGAACATTGAAGCACT 57.717 45.000 0.00 0.00 0.00 4.40
421 422 2.590821 AGCAGGAACATTGAAGCACTT 58.409 42.857 0.00 0.00 0.00 3.16
422 423 2.961062 AGCAGGAACATTGAAGCACTTT 59.039 40.909 0.00 0.00 0.00 2.66
423 424 3.005155 AGCAGGAACATTGAAGCACTTTC 59.995 43.478 0.00 0.00 36.29 2.62
424 425 3.243501 GCAGGAACATTGAAGCACTTTCA 60.244 43.478 0.00 0.00 43.92 2.69
434 435 5.381174 TGAAGCACTTTCAAGAATCATGG 57.619 39.130 0.00 0.00 42.69 3.66
435 436 4.219070 TGAAGCACTTTCAAGAATCATGGG 59.781 41.667 0.00 0.00 42.69 4.00
436 437 4.038271 AGCACTTTCAAGAATCATGGGA 57.962 40.909 0.00 0.00 0.00 4.37
437 438 4.607239 AGCACTTTCAAGAATCATGGGAT 58.393 39.130 0.00 0.00 34.43 3.85
438 439 5.759059 AGCACTTTCAAGAATCATGGGATA 58.241 37.500 0.00 0.00 32.09 2.59
439 440 6.189859 AGCACTTTCAAGAATCATGGGATAA 58.810 36.000 0.00 0.00 32.09 1.75
440 441 6.837568 AGCACTTTCAAGAATCATGGGATAAT 59.162 34.615 0.00 0.00 32.09 1.28
441 442 7.014038 AGCACTTTCAAGAATCATGGGATAATC 59.986 37.037 0.00 0.00 32.09 1.75
442 443 7.655490 CACTTTCAAGAATCATGGGATAATCC 58.345 38.462 0.00 0.00 35.23 3.01
443 444 7.286087 CACTTTCAAGAATCATGGGATAATCCA 59.714 37.037 0.00 0.00 38.64 3.41
444 445 7.840716 ACTTTCAAGAATCATGGGATAATCCAA 59.159 33.333 0.00 0.00 40.62 3.53
445 446 8.786710 TTTCAAGAATCATGGGATAATCCAAT 57.213 30.769 0.00 0.00 40.62 3.16
446 447 9.880254 TTTCAAGAATCATGGGATAATCCAATA 57.120 29.630 0.00 0.00 40.62 1.90
447 448 9.880254 TTCAAGAATCATGGGATAATCCAATAA 57.120 29.630 0.00 0.00 40.62 1.40
448 449 9.300681 TCAAGAATCATGGGATAATCCAATAAC 57.699 33.333 0.00 0.00 40.62 1.89
449 450 9.081204 CAAGAATCATGGGATAATCCAATAACA 57.919 33.333 0.00 0.00 40.62 2.41
450 451 9.833179 AAGAATCATGGGATAATCCAATAACAT 57.167 29.630 0.00 0.00 40.62 2.71
451 452 9.833179 AGAATCATGGGATAATCCAATAACATT 57.167 29.630 0.00 0.00 40.62 2.71
454 455 8.421249 TCATGGGATAATCCAATAACATTTCC 57.579 34.615 0.00 0.00 40.62 3.13
455 456 8.233820 TCATGGGATAATCCAATAACATTTCCT 58.766 33.333 0.00 0.00 40.62 3.36
456 457 7.838079 TGGGATAATCCAATAACATTTCCTG 57.162 36.000 0.00 0.00 38.64 3.86
457 458 7.361438 TGGGATAATCCAATAACATTTCCTGT 58.639 34.615 0.00 0.00 38.64 4.00
458 459 7.287466 TGGGATAATCCAATAACATTTCCTGTG 59.713 37.037 0.00 0.00 38.64 3.66
459 460 7.287696 GGGATAATCCAATAACATTTCCTGTGT 59.712 37.037 0.00 0.00 38.64 3.72
460 461 8.695456 GGATAATCCAATAACATTTCCTGTGTT 58.305 33.333 0.00 0.00 38.67 3.32
462 463 9.874205 ATAATCCAATAACATTTCCTGTGTTTG 57.126 29.630 0.00 0.00 40.13 2.93
463 464 6.095432 TCCAATAACATTTCCTGTGTTTGG 57.905 37.500 10.85 10.85 44.49 3.28
464 465 5.835819 TCCAATAACATTTCCTGTGTTTGGA 59.164 36.000 13.82 13.82 46.79 3.53
465 466 6.325028 TCCAATAACATTTCCTGTGTTTGGAA 59.675 34.615 14.79 0.00 46.41 3.53
475 476 8.572855 TTTCCTGTGTTTGGAAATGAAAAATT 57.427 26.923 4.09 0.00 45.39 1.82
476 477 7.784633 TCCTGTGTTTGGAAATGAAAAATTC 57.215 32.000 0.00 0.00 0.00 2.17
477 478 7.334090 TCCTGTGTTTGGAAATGAAAAATTCA 58.666 30.769 0.00 0.00 45.01 2.57
498 499 8.693542 ATTCATTGCAAACTCAATAAGTAAGC 57.306 30.769 1.71 0.00 37.17 3.09
499 500 7.213216 TCATTGCAAACTCAATAAGTAAGCA 57.787 32.000 1.71 0.00 42.63 3.91
503 504 7.872163 TGCAAACTCAATAAGTAAGCAATTG 57.128 32.000 0.00 0.00 41.89 2.32
504 505 7.432869 TGCAAACTCAATAAGTAAGCAATTGT 58.567 30.769 7.40 0.00 41.89 2.71
505 506 7.925483 TGCAAACTCAATAAGTAAGCAATTGTT 59.075 29.630 7.40 0.00 41.89 2.83
506 507 8.764287 GCAAACTCAATAAGTAAGCAATTGTTT 58.236 29.630 12.39 12.39 37.17 2.83
509 510 9.816354 AACTCAATAAGTAAGCAATTGTTTTGT 57.184 25.926 12.99 2.07 37.17 2.83
510 511 9.816354 ACTCAATAAGTAAGCAATTGTTTTGTT 57.184 25.926 12.99 9.25 36.07 2.83
512 513 9.809096 TCAATAAGTAAGCAATTGTTTTGTTGA 57.191 25.926 12.99 11.73 33.35 3.18
515 516 9.762933 ATAAGTAAGCAATTGTTTTGTTGATGT 57.237 25.926 12.99 0.00 0.00 3.06
517 518 9.593134 AAGTAAGCAATTGTTTTGTTGATGTAA 57.407 25.926 12.99 0.00 0.00 2.41
518 519 9.248291 AGTAAGCAATTGTTTTGTTGATGTAAG 57.752 29.630 12.99 0.00 0.00 2.34
519 520 9.030301 GTAAGCAATTGTTTTGTTGATGTAAGT 57.970 29.630 12.99 0.00 0.00 2.24
520 521 8.491331 AAGCAATTGTTTTGTTGATGTAAGTT 57.509 26.923 7.40 0.00 0.00 2.66
521 522 8.491331 AGCAATTGTTTTGTTGATGTAAGTTT 57.509 26.923 7.40 0.00 0.00 2.66
522 523 8.945057 AGCAATTGTTTTGTTGATGTAAGTTTT 58.055 25.926 7.40 0.00 0.00 2.43
523 524 9.553418 GCAATTGTTTTGTTGATGTAAGTTTTT 57.447 25.926 7.40 0.00 0.00 1.94
544 545 5.500546 TTTTAAACCCAAACCACCAAACT 57.499 34.783 0.00 0.00 0.00 2.66
545 546 5.500546 TTTAAACCCAAACCACCAAACTT 57.499 34.783 0.00 0.00 0.00 2.66
546 547 5.500546 TTAAACCCAAACCACCAAACTTT 57.499 34.783 0.00 0.00 0.00 2.66
547 548 4.374689 AAACCCAAACCACCAAACTTTT 57.625 36.364 0.00 0.00 0.00 2.27
548 549 4.374689 AACCCAAACCACCAAACTTTTT 57.625 36.364 0.00 0.00 0.00 1.94
569 570 6.452494 TTTTGGTTTACAATGTTCTTCCGA 57.548 33.333 0.00 0.00 39.21 4.55
570 571 5.682943 TTGGTTTACAATGTTCTTCCGAG 57.317 39.130 0.00 0.00 33.18 4.63
571 572 3.500680 TGGTTTACAATGTTCTTCCGAGC 59.499 43.478 0.00 0.00 0.00 5.03
572 573 3.500680 GGTTTACAATGTTCTTCCGAGCA 59.499 43.478 0.00 0.00 34.79 4.26
573 574 4.023536 GGTTTACAATGTTCTTCCGAGCAA 60.024 41.667 0.00 0.00 33.97 3.91
574 575 5.335661 GGTTTACAATGTTCTTCCGAGCAAT 60.336 40.000 0.00 0.00 33.97 3.56
575 576 5.957842 TTACAATGTTCTTCCGAGCAATT 57.042 34.783 0.00 0.00 33.97 2.32
576 577 7.302524 GTTTACAATGTTCTTCCGAGCAATTA 58.697 34.615 0.00 0.00 33.97 1.40
577 578 5.551760 ACAATGTTCTTCCGAGCAATTAG 57.448 39.130 0.00 0.00 33.97 1.73
578 579 5.245531 ACAATGTTCTTCCGAGCAATTAGA 58.754 37.500 0.00 0.00 33.97 2.10
579 580 5.122396 ACAATGTTCTTCCGAGCAATTAGAC 59.878 40.000 0.00 0.00 33.97 2.59
580 581 4.265904 TGTTCTTCCGAGCAATTAGACA 57.734 40.909 0.00 0.00 0.00 3.41
581 582 3.994392 TGTTCTTCCGAGCAATTAGACAC 59.006 43.478 0.00 0.00 0.00 3.67
582 583 4.246458 GTTCTTCCGAGCAATTAGACACT 58.754 43.478 0.00 0.00 0.00 3.55
583 584 3.849911 TCTTCCGAGCAATTAGACACTG 58.150 45.455 0.00 0.00 0.00 3.66
584 585 2.672961 TCCGAGCAATTAGACACTGG 57.327 50.000 0.00 0.00 0.00 4.00
585 586 1.207089 TCCGAGCAATTAGACACTGGG 59.793 52.381 0.00 0.00 0.00 4.45
586 587 1.009829 CGAGCAATTAGACACTGGGC 58.990 55.000 0.00 0.00 0.00 5.36
587 588 1.675714 CGAGCAATTAGACACTGGGCA 60.676 52.381 0.00 0.00 0.00 5.36
588 589 2.012673 GAGCAATTAGACACTGGGCAG 58.987 52.381 0.00 0.00 0.00 4.85
589 590 0.453390 GCAATTAGACACTGGGCAGC 59.547 55.000 0.00 0.00 0.00 5.25
590 591 1.825090 CAATTAGACACTGGGCAGCA 58.175 50.000 0.00 0.00 0.00 4.41
591 592 1.741706 CAATTAGACACTGGGCAGCAG 59.258 52.381 0.00 0.00 0.00 4.24
592 593 0.987294 ATTAGACACTGGGCAGCAGT 59.013 50.000 0.00 0.00 0.00 4.40
593 594 1.639722 TTAGACACTGGGCAGCAGTA 58.360 50.000 0.00 0.00 0.00 2.74
594 595 0.895530 TAGACACTGGGCAGCAGTAC 59.104 55.000 0.00 0.00 0.00 2.73
595 596 1.121407 AGACACTGGGCAGCAGTACA 61.121 55.000 0.00 0.00 0.00 2.90
596 597 0.951040 GACACTGGGCAGCAGTACAC 60.951 60.000 0.00 0.00 0.00 2.90
597 598 1.071299 CACTGGGCAGCAGTACACA 59.929 57.895 0.00 0.00 0.00 3.72
598 599 0.321919 CACTGGGCAGCAGTACACAT 60.322 55.000 0.00 0.00 0.00 3.21
599 600 0.321919 ACTGGGCAGCAGTACACATG 60.322 55.000 0.00 0.00 0.00 3.21
600 601 0.321919 CTGGGCAGCAGTACACATGT 60.322 55.000 0.00 0.00 0.00 3.21
601 602 0.606130 TGGGCAGCAGTACACATGTG 60.606 55.000 24.25 24.25 0.00 3.21
602 603 0.606401 GGGCAGCAGTACACATGTGT 60.606 55.000 32.47 32.47 46.87 3.72
603 604 0.798776 GGCAGCAGTACACATGTGTC 59.201 55.000 33.72 23.49 43.74 3.67
604 605 0.798776 GCAGCAGTACACATGTGTCC 59.201 55.000 33.72 23.58 43.74 4.02
605 606 1.609061 GCAGCAGTACACATGTGTCCT 60.609 52.381 33.72 25.54 43.74 3.85
606 607 2.341257 CAGCAGTACACATGTGTCCTC 58.659 52.381 33.72 23.28 43.74 3.71
607 608 2.028658 CAGCAGTACACATGTGTCCTCT 60.029 50.000 33.72 24.89 43.74 3.69
608 609 3.193479 CAGCAGTACACATGTGTCCTCTA 59.807 47.826 33.72 14.48 43.74 2.43
609 610 3.193691 AGCAGTACACATGTGTCCTCTAC 59.806 47.826 33.72 24.59 43.74 2.59
610 611 3.056821 GCAGTACACATGTGTCCTCTACA 60.057 47.826 33.72 12.94 43.74 2.74
611 612 4.560716 GCAGTACACATGTGTCCTCTACAA 60.561 45.833 33.72 12.16 43.74 2.41
612 613 4.923871 CAGTACACATGTGTCCTCTACAAC 59.076 45.833 33.72 22.53 43.74 3.32
613 614 3.402628 ACACATGTGTCCTCTACAACC 57.597 47.619 25.76 0.00 40.24 3.77
614 615 2.972713 ACACATGTGTCCTCTACAACCT 59.027 45.455 25.76 0.00 40.24 3.50
615 616 4.157246 ACACATGTGTCCTCTACAACCTA 58.843 43.478 25.76 0.00 40.24 3.08
616 617 4.021368 ACACATGTGTCCTCTACAACCTAC 60.021 45.833 25.76 0.00 40.24 3.18
617 618 4.021456 CACATGTGTCCTCTACAACCTACA 60.021 45.833 18.03 0.00 40.63 2.74
618 619 4.777896 ACATGTGTCCTCTACAACCTACAT 59.222 41.667 0.00 0.00 40.63 2.29
619 620 4.801330 TGTGTCCTCTACAACCTACATG 57.199 45.455 0.00 0.00 40.63 3.21
620 621 3.513912 TGTGTCCTCTACAACCTACATGG 59.486 47.826 0.00 0.00 40.63 3.66
621 622 2.500098 TGTCCTCTACAACCTACATGGC 59.500 50.000 0.00 0.00 34.29 4.40
622 623 2.500098 GTCCTCTACAACCTACATGGCA 59.500 50.000 0.00 0.00 40.22 4.92
623 624 3.055385 GTCCTCTACAACCTACATGGCAA 60.055 47.826 0.00 0.00 40.22 4.52
624 625 3.585289 TCCTCTACAACCTACATGGCAAA 59.415 43.478 0.00 0.00 40.22 3.68
625 626 4.042311 TCCTCTACAACCTACATGGCAAAA 59.958 41.667 0.00 0.00 40.22 2.44
626 627 4.396166 CCTCTACAACCTACATGGCAAAAG 59.604 45.833 0.00 0.00 40.22 2.27
627 628 3.756434 TCTACAACCTACATGGCAAAAGC 59.244 43.478 0.00 0.00 40.22 3.51
628 629 1.618343 ACAACCTACATGGCAAAAGCC 59.382 47.619 0.00 0.00 40.22 4.35
629 630 0.887933 AACCTACATGGCAAAAGCCG 59.112 50.000 0.00 0.00 40.22 5.52
630 631 0.251165 ACCTACATGGCAAAAGCCGT 60.251 50.000 0.00 0.00 40.22 5.68
631 632 1.003812 ACCTACATGGCAAAAGCCGTA 59.996 47.619 0.19 0.00 40.22 4.02
632 633 2.297701 CCTACATGGCAAAAGCCGTAT 58.702 47.619 0.19 0.00 0.00 3.06
633 634 2.687935 CCTACATGGCAAAAGCCGTATT 59.312 45.455 0.19 0.00 0.00 1.89
1064 1120 2.228103 ACGAGTACATGAGCGAGTTCAA 59.772 45.455 0.00 0.00 0.00 2.69
1325 1400 2.747855 CAGAGGCCGGGCAAGTTC 60.748 66.667 31.59 18.69 0.00 3.01
1514 1595 9.027202 TGGTATGTCTGAATACTGTACTTGTAA 57.973 33.333 0.00 0.00 34.14 2.41
1841 1961 1.889545 AACTGCAGAAGGAGCTTGAC 58.110 50.000 23.35 0.00 36.54 3.18
1908 2028 8.790718 CCAAGTTATTTGATTATCAGGATGGAG 58.209 37.037 0.00 0.00 39.21 3.86
2066 2186 7.440198 TCCTTCAGAGTCAAGCTGATATAATG 58.560 38.462 0.00 0.00 41.60 1.90
2228 2352 1.902508 GTGATGGAGGAGTGAAGTGGA 59.097 52.381 0.00 0.00 0.00 4.02
2242 2366 0.908198 AGTGGAAGCTCTGGATGGTC 59.092 55.000 0.00 0.00 0.00 4.02
2431 2570 7.614583 CCCAAATATTATCCTGATGCTGAGAAT 59.385 37.037 0.00 0.00 0.00 2.40
2698 2837 5.183713 TGAGATTGCAAACACCCTGATAAAG 59.816 40.000 1.71 0.00 0.00 1.85
2701 2840 3.826524 TGCAAACACCCTGATAAAGTGA 58.173 40.909 0.00 0.00 35.47 3.41
2702 2841 3.568007 TGCAAACACCCTGATAAAGTGAC 59.432 43.478 0.00 0.00 35.47 3.67
2703 2842 3.568007 GCAAACACCCTGATAAAGTGACA 59.432 43.478 0.00 0.00 35.47 3.58
2704 2843 4.320494 GCAAACACCCTGATAAAGTGACAG 60.320 45.833 0.00 0.00 35.47 3.51
2705 2844 4.974645 AACACCCTGATAAAGTGACAGA 57.025 40.909 0.00 0.00 35.47 3.41
2706 2845 4.974645 ACACCCTGATAAAGTGACAGAA 57.025 40.909 0.00 0.00 35.47 3.02
2707 2846 4.642429 ACACCCTGATAAAGTGACAGAAC 58.358 43.478 0.00 0.00 35.47 3.01
2740 2893 8.759481 ACAGAACTGAATCTCACATAGATCTA 57.241 34.615 4.57 4.57 44.56 1.98
3001 3154 3.710209 GCTTGTGCTGGAGGGATATAT 57.290 47.619 0.00 0.00 36.03 0.86
3002 3155 4.026356 GCTTGTGCTGGAGGGATATATT 57.974 45.455 0.00 0.00 36.03 1.28
3060 3213 0.250513 GAGTCCGCCTCCTTCATTGT 59.749 55.000 0.00 0.00 33.79 2.71
3140 3293 0.108615 GCGCTGCTTCTCCTTAGTCA 60.109 55.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 7.587629 CATCATCAGTTCTTGAAACAAAGCTA 58.412 34.615 0.00 0.00 39.77 3.32
103 104 9.909644 CACAAGCTAGAGAAACTAACTAACTTA 57.090 33.333 0.00 0.00 28.79 2.24
104 105 7.385478 GCACAAGCTAGAGAAACTAACTAACTT 59.615 37.037 0.00 0.00 37.91 2.66
105 106 6.869388 GCACAAGCTAGAGAAACTAACTAACT 59.131 38.462 0.00 0.00 37.91 2.24
106 107 6.645415 TGCACAAGCTAGAGAAACTAACTAAC 59.355 38.462 0.00 0.00 42.74 2.34
107 108 6.755206 TGCACAAGCTAGAGAAACTAACTAA 58.245 36.000 0.00 0.00 42.74 2.24
108 109 6.340962 TGCACAAGCTAGAGAAACTAACTA 57.659 37.500 0.00 0.00 42.74 2.24
109 110 5.215252 TGCACAAGCTAGAGAAACTAACT 57.785 39.130 0.00 0.00 42.74 2.24
110 111 5.672321 GCATGCACAAGCTAGAGAAACTAAC 60.672 44.000 14.21 0.00 42.74 2.34
111 112 4.393062 GCATGCACAAGCTAGAGAAACTAA 59.607 41.667 14.21 0.00 42.74 2.24
112 113 3.935203 GCATGCACAAGCTAGAGAAACTA 59.065 43.478 14.21 0.00 42.74 2.24
113 114 2.746362 GCATGCACAAGCTAGAGAAACT 59.254 45.455 14.21 0.00 42.74 2.66
114 115 2.485426 TGCATGCACAAGCTAGAGAAAC 59.515 45.455 18.46 0.00 42.74 2.78
115 116 2.485426 GTGCATGCACAAGCTAGAGAAA 59.515 45.455 39.12 3.05 45.53 2.52
116 117 2.079158 GTGCATGCACAAGCTAGAGAA 58.921 47.619 39.12 3.53 45.53 2.87
117 118 1.730501 GTGCATGCACAAGCTAGAGA 58.269 50.000 39.12 3.75 45.53 3.10
118 119 0.372679 CGTGCATGCACAAGCTAGAG 59.627 55.000 40.95 23.50 46.47 2.43
119 120 1.638388 GCGTGCATGCACAAGCTAGA 61.638 55.000 40.95 8.06 46.47 2.43
120 121 1.226211 GCGTGCATGCACAAGCTAG 60.226 57.895 40.95 27.83 46.47 3.42
121 122 1.513836 TTGCGTGCATGCACAAGCTA 61.514 50.000 40.95 31.56 46.25 3.32
122 123 2.149803 ATTGCGTGCATGCACAAGCT 62.150 50.000 40.95 23.63 46.25 3.74
123 124 1.286354 AATTGCGTGCATGCACAAGC 61.286 50.000 40.95 36.00 46.25 4.01
124 125 0.436913 CAATTGCGTGCATGCACAAG 59.563 50.000 40.95 29.73 46.25 3.16
125 126 0.249363 ACAATTGCGTGCATGCACAA 60.249 45.000 40.95 31.36 46.25 3.33
126 127 0.940047 CACAATTGCGTGCATGCACA 60.940 50.000 40.95 27.37 46.25 4.57
127 128 0.940519 ACACAATTGCGTGCATGCAC 60.941 50.000 35.76 35.76 46.25 4.57
128 129 0.249363 AACACAATTGCGTGCATGCA 60.249 45.000 29.30 29.30 44.61 3.96
129 130 0.860533 AAACACAATTGCGTGCATGC 59.139 45.000 24.20 24.20 40.73 4.06
130 131 2.154198 CAGAAACACAATTGCGTGCATG 59.846 45.455 5.05 0.09 40.73 4.06
131 132 2.223782 ACAGAAACACAATTGCGTGCAT 60.224 40.909 5.05 0.00 40.73 3.96
132 133 1.133982 ACAGAAACACAATTGCGTGCA 59.866 42.857 5.05 0.00 40.73 4.57
133 134 1.838913 ACAGAAACACAATTGCGTGC 58.161 45.000 5.05 0.00 40.73 5.34
134 135 4.838665 AAAACAGAAACACAATTGCGTG 57.161 36.364 5.05 0.00 42.81 5.34
135 136 4.688413 ACAAAAACAGAAACACAATTGCGT 59.312 33.333 5.05 0.00 0.00 5.24
136 137 5.014483 CACAAAAACAGAAACACAATTGCG 58.986 37.500 5.05 0.00 0.00 4.85
137 138 4.787591 GCACAAAAACAGAAACACAATTGC 59.212 37.500 5.05 0.00 0.00 3.56
138 139 5.014483 CGCACAAAAACAGAAACACAATTG 58.986 37.500 3.24 3.24 0.00 2.32
139 140 4.092675 CCGCACAAAAACAGAAACACAATT 59.907 37.500 0.00 0.00 0.00 2.32
140 141 3.616379 CCGCACAAAAACAGAAACACAAT 59.384 39.130 0.00 0.00 0.00 2.71
141 142 2.989840 CCGCACAAAAACAGAAACACAA 59.010 40.909 0.00 0.00 0.00 3.33
142 143 2.229062 TCCGCACAAAAACAGAAACACA 59.771 40.909 0.00 0.00 0.00 3.72
143 144 2.869897 TCCGCACAAAAACAGAAACAC 58.130 42.857 0.00 0.00 0.00 3.32
144 145 3.119316 ACATCCGCACAAAAACAGAAACA 60.119 39.130 0.00 0.00 0.00 2.83
145 146 3.443976 ACATCCGCACAAAAACAGAAAC 58.556 40.909 0.00 0.00 0.00 2.78
146 147 3.791973 ACATCCGCACAAAAACAGAAA 57.208 38.095 0.00 0.00 0.00 2.52
147 148 3.791973 AACATCCGCACAAAAACAGAA 57.208 38.095 0.00 0.00 0.00 3.02
148 149 4.024387 GTCTAACATCCGCACAAAAACAGA 60.024 41.667 0.00 0.00 0.00 3.41
149 150 4.024048 AGTCTAACATCCGCACAAAAACAG 60.024 41.667 0.00 0.00 0.00 3.16
150 151 3.880490 AGTCTAACATCCGCACAAAAACA 59.120 39.130 0.00 0.00 0.00 2.83
151 152 4.483476 AGTCTAACATCCGCACAAAAAC 57.517 40.909 0.00 0.00 0.00 2.43
152 153 4.261405 CCAAGTCTAACATCCGCACAAAAA 60.261 41.667 0.00 0.00 0.00 1.94
153 154 3.252215 CCAAGTCTAACATCCGCACAAAA 59.748 43.478 0.00 0.00 0.00 2.44
154 155 2.811431 CCAAGTCTAACATCCGCACAAA 59.189 45.455 0.00 0.00 0.00 2.83
155 156 2.037902 TCCAAGTCTAACATCCGCACAA 59.962 45.455 0.00 0.00 0.00 3.33
156 157 1.621317 TCCAAGTCTAACATCCGCACA 59.379 47.619 0.00 0.00 0.00 4.57
157 158 2.380084 TCCAAGTCTAACATCCGCAC 57.620 50.000 0.00 0.00 0.00 5.34
158 159 4.503123 CCATATCCAAGTCTAACATCCGCA 60.503 45.833 0.00 0.00 0.00 5.69
159 160 3.997021 CCATATCCAAGTCTAACATCCGC 59.003 47.826 0.00 0.00 0.00 5.54
160 161 4.569943 CCCATATCCAAGTCTAACATCCG 58.430 47.826 0.00 0.00 0.00 4.18
161 162 4.042187 AGCCCATATCCAAGTCTAACATCC 59.958 45.833 0.00 0.00 0.00 3.51
162 163 5.234466 AGCCCATATCCAAGTCTAACATC 57.766 43.478 0.00 0.00 0.00 3.06
163 164 5.013183 GGTAGCCCATATCCAAGTCTAACAT 59.987 44.000 0.00 0.00 0.00 2.71
164 165 4.347000 GGTAGCCCATATCCAAGTCTAACA 59.653 45.833 0.00 0.00 0.00 2.41
165 166 4.593634 AGGTAGCCCATATCCAAGTCTAAC 59.406 45.833 0.00 0.00 0.00 2.34
166 167 4.827789 AGGTAGCCCATATCCAAGTCTAA 58.172 43.478 0.00 0.00 0.00 2.10
167 168 4.487282 AGGTAGCCCATATCCAAGTCTA 57.513 45.455 0.00 0.00 0.00 2.59
168 169 3.352611 AGGTAGCCCATATCCAAGTCT 57.647 47.619 0.00 0.00 0.00 3.24
169 170 3.391296 TGAAGGTAGCCCATATCCAAGTC 59.609 47.826 0.00 0.00 0.00 3.01
170 171 3.393687 TGAAGGTAGCCCATATCCAAGT 58.606 45.455 0.00 0.00 0.00 3.16
171 172 4.288105 AGATGAAGGTAGCCCATATCCAAG 59.712 45.833 0.00 0.00 0.00 3.61
172 173 4.242811 AGATGAAGGTAGCCCATATCCAA 58.757 43.478 0.00 0.00 0.00 3.53
173 174 3.874316 AGATGAAGGTAGCCCATATCCA 58.126 45.455 0.00 0.00 0.00 3.41
174 175 4.777896 TGTAGATGAAGGTAGCCCATATCC 59.222 45.833 0.00 0.00 0.00 2.59
175 176 6.552445 ATGTAGATGAAGGTAGCCCATATC 57.448 41.667 0.00 0.00 0.00 1.63
176 177 6.959606 AATGTAGATGAAGGTAGCCCATAT 57.040 37.500 0.00 0.00 0.00 1.78
177 178 6.763715 AAATGTAGATGAAGGTAGCCCATA 57.236 37.500 0.00 0.00 0.00 2.74
178 179 5.653255 AAATGTAGATGAAGGTAGCCCAT 57.347 39.130 0.00 0.00 0.00 4.00
179 180 5.450818 AAAATGTAGATGAAGGTAGCCCA 57.549 39.130 0.00 0.00 0.00 5.36
180 181 6.827727 TCTAAAATGTAGATGAAGGTAGCCC 58.172 40.000 0.00 0.00 0.00 5.19
181 182 7.727181 TCTCTAAAATGTAGATGAAGGTAGCC 58.273 38.462 0.00 0.00 0.00 3.93
185 186 9.440761 ACCTATCTCTAAAATGTAGATGAAGGT 57.559 33.333 0.00 0.00 32.39 3.50
195 196 8.145122 GCACTAGCTAACCTATCTCTAAAATGT 58.855 37.037 0.00 0.00 37.91 2.71
196 197 8.527567 GCACTAGCTAACCTATCTCTAAAATG 57.472 38.462 0.00 0.00 37.91 2.32
214 215 3.064958 TGAGTACATACACGAGCACTAGC 59.935 47.826 0.00 0.00 42.56 3.42
215 216 4.571176 TCTGAGTACATACACGAGCACTAG 59.429 45.833 0.00 0.00 0.00 2.57
216 217 4.331992 GTCTGAGTACATACACGAGCACTA 59.668 45.833 0.00 0.00 0.00 2.74
217 218 3.127203 GTCTGAGTACATACACGAGCACT 59.873 47.826 0.00 0.00 0.00 4.40
218 219 3.127203 AGTCTGAGTACATACACGAGCAC 59.873 47.826 0.00 0.00 0.00 4.40
219 220 3.344515 AGTCTGAGTACATACACGAGCA 58.655 45.455 0.00 0.00 0.00 4.26
220 221 3.242804 GGAGTCTGAGTACATACACGAGC 60.243 52.174 0.00 0.00 0.00 5.03
221 222 3.312973 GGGAGTCTGAGTACATACACGAG 59.687 52.174 0.00 0.00 0.00 4.18
222 223 3.276857 GGGAGTCTGAGTACATACACGA 58.723 50.000 0.00 0.00 0.00 4.35
223 224 2.358267 GGGGAGTCTGAGTACATACACG 59.642 54.545 0.00 0.00 0.00 4.49
224 225 2.694109 GGGGGAGTCTGAGTACATACAC 59.306 54.545 0.00 0.00 0.00 2.90
225 226 2.313643 TGGGGGAGTCTGAGTACATACA 59.686 50.000 0.00 0.00 0.00 2.29
226 227 3.028094 TGGGGGAGTCTGAGTACATAC 57.972 52.381 0.00 0.00 0.00 2.39
227 228 3.012502 ACTTGGGGGAGTCTGAGTACATA 59.987 47.826 0.00 0.00 0.00 2.29
228 229 2.225650 ACTTGGGGGAGTCTGAGTACAT 60.226 50.000 0.00 0.00 0.00 2.29
229 230 1.149288 ACTTGGGGGAGTCTGAGTACA 59.851 52.381 0.00 0.00 0.00 2.90
230 231 1.939980 ACTTGGGGGAGTCTGAGTAC 58.060 55.000 0.00 0.00 0.00 2.73
231 232 2.024273 CCTACTTGGGGGAGTCTGAGTA 60.024 54.545 0.00 0.00 0.00 2.59
232 233 1.273324 CCTACTTGGGGGAGTCTGAGT 60.273 57.143 0.00 0.00 0.00 3.41
233 234 1.273324 ACCTACTTGGGGGAGTCTGAG 60.273 57.143 0.00 0.00 41.11 3.35
234 235 0.790993 ACCTACTTGGGGGAGTCTGA 59.209 55.000 0.00 0.00 41.11 3.27
235 236 0.905357 CACCTACTTGGGGGAGTCTG 59.095 60.000 0.00 0.00 41.11 3.51
236 237 0.492276 ACACCTACTTGGGGGAGTCT 59.508 55.000 0.00 0.00 45.72 3.24
237 238 1.003233 CAACACCTACTTGGGGGAGTC 59.997 57.143 0.00 0.00 45.72 3.36
238 239 1.064825 CAACACCTACTTGGGGGAGT 58.935 55.000 0.00 0.00 45.72 3.85
239 240 1.358152 TCAACACCTACTTGGGGGAG 58.642 55.000 0.00 0.00 45.72 4.30
240 241 2.053747 ATCAACACCTACTTGGGGGA 57.946 50.000 0.00 0.00 45.72 4.81
241 242 2.899303 AATCAACACCTACTTGGGGG 57.101 50.000 0.00 0.00 45.72 5.40
242 243 4.881850 GATGTAATCAACACCTACTTGGGG 59.118 45.833 0.00 0.00 44.70 4.96
257 258 8.428186 AATGAACAAATTGCCATGATGTAATC 57.572 30.769 0.00 0.00 45.83 1.75
258 259 8.795842 AAATGAACAAATTGCCATGATGTAAT 57.204 26.923 0.00 0.00 0.00 1.89
259 260 7.063191 CGAAATGAACAAATTGCCATGATGTAA 59.937 33.333 0.00 0.00 0.00 2.41
260 261 6.530887 CGAAATGAACAAATTGCCATGATGTA 59.469 34.615 0.00 0.00 0.00 2.29
261 262 5.349270 CGAAATGAACAAATTGCCATGATGT 59.651 36.000 0.00 0.00 0.00 3.06
262 263 5.577554 TCGAAATGAACAAATTGCCATGATG 59.422 36.000 0.00 0.00 0.00 3.07
263 264 5.577945 GTCGAAATGAACAAATTGCCATGAT 59.422 36.000 0.00 0.00 0.00 2.45
264 265 4.922692 GTCGAAATGAACAAATTGCCATGA 59.077 37.500 0.00 0.00 0.00 3.07
265 266 4.685165 TGTCGAAATGAACAAATTGCCATG 59.315 37.500 0.00 0.00 0.00 3.66
266 267 4.880759 TGTCGAAATGAACAAATTGCCAT 58.119 34.783 0.00 0.00 0.00 4.40
267 268 4.037327 TCTGTCGAAATGAACAAATTGCCA 59.963 37.500 0.00 0.00 0.00 4.92
268 269 4.382754 GTCTGTCGAAATGAACAAATTGCC 59.617 41.667 0.00 0.00 0.00 4.52
269 270 5.116074 CAGTCTGTCGAAATGAACAAATTGC 59.884 40.000 0.00 0.00 0.00 3.56
270 271 6.201517 ACAGTCTGTCGAAATGAACAAATTG 58.798 36.000 0.00 0.00 0.00 2.32
271 272 6.377327 ACAGTCTGTCGAAATGAACAAATT 57.623 33.333 0.00 0.00 0.00 1.82
272 273 5.990408 GACAGTCTGTCGAAATGAACAAAT 58.010 37.500 17.00 0.00 37.67 2.32
273 274 5.403897 GACAGTCTGTCGAAATGAACAAA 57.596 39.130 17.00 0.00 37.67 2.83
286 287 2.355108 CCCGGATCAAATGACAGTCTGT 60.355 50.000 4.81 4.81 0.00 3.41
287 288 2.283298 CCCGGATCAAATGACAGTCTG 58.717 52.381 0.73 0.00 0.00 3.51
288 289 1.210478 CCCCGGATCAAATGACAGTCT 59.790 52.381 0.73 0.00 0.00 3.24
289 290 1.209504 TCCCCGGATCAAATGACAGTC 59.790 52.381 0.73 0.00 0.00 3.51
290 291 1.285280 TCCCCGGATCAAATGACAGT 58.715 50.000 0.73 0.00 0.00 3.55
291 292 2.418368 TTCCCCGGATCAAATGACAG 57.582 50.000 0.73 0.00 0.00 3.51
292 293 3.380471 AATTCCCCGGATCAAATGACA 57.620 42.857 0.73 0.00 0.00 3.58
293 294 3.954258 AGAAATTCCCCGGATCAAATGAC 59.046 43.478 0.73 0.00 0.00 3.06
294 295 4.079787 AGAGAAATTCCCCGGATCAAATGA 60.080 41.667 0.73 0.00 0.00 2.57
295 296 4.210331 AGAGAAATTCCCCGGATCAAATG 58.790 43.478 0.73 0.00 0.00 2.32
296 297 4.526438 AGAGAAATTCCCCGGATCAAAT 57.474 40.909 0.73 0.00 0.00 2.32
297 298 4.016444 CAAGAGAAATTCCCCGGATCAAA 58.984 43.478 0.73 0.00 0.00 2.69
298 299 3.620488 CAAGAGAAATTCCCCGGATCAA 58.380 45.455 0.73 0.00 0.00 2.57
299 300 2.092429 CCAAGAGAAATTCCCCGGATCA 60.092 50.000 0.73 0.00 0.00 2.92
300 301 2.092375 ACCAAGAGAAATTCCCCGGATC 60.092 50.000 0.73 0.00 0.00 3.36
301 302 1.923148 ACCAAGAGAAATTCCCCGGAT 59.077 47.619 0.73 0.00 0.00 4.18
302 303 1.368374 ACCAAGAGAAATTCCCCGGA 58.632 50.000 0.73 0.00 0.00 5.14
303 304 1.818674 CAACCAAGAGAAATTCCCCGG 59.181 52.381 0.00 0.00 0.00 5.73
304 305 1.818674 CCAACCAAGAGAAATTCCCCG 59.181 52.381 0.00 0.00 0.00 5.73
305 306 2.179427 CCCAACCAAGAGAAATTCCCC 58.821 52.381 0.00 0.00 0.00 4.81
306 307 2.889512 ACCCAACCAAGAGAAATTCCC 58.110 47.619 0.00 0.00 0.00 3.97
307 308 5.624509 GCATAACCCAACCAAGAGAAATTCC 60.625 44.000 0.00 0.00 0.00 3.01
308 309 5.410924 GCATAACCCAACCAAGAGAAATTC 58.589 41.667 0.00 0.00 0.00 2.17
309 310 4.082245 CGCATAACCCAACCAAGAGAAATT 60.082 41.667 0.00 0.00 0.00 1.82
310 311 3.443681 CGCATAACCCAACCAAGAGAAAT 59.556 43.478 0.00 0.00 0.00 2.17
311 312 2.817258 CGCATAACCCAACCAAGAGAAA 59.183 45.455 0.00 0.00 0.00 2.52
312 313 2.432444 CGCATAACCCAACCAAGAGAA 58.568 47.619 0.00 0.00 0.00 2.87
313 314 1.948611 GCGCATAACCCAACCAAGAGA 60.949 52.381 0.30 0.00 0.00 3.10
314 315 0.451783 GCGCATAACCCAACCAAGAG 59.548 55.000 0.30 0.00 0.00 2.85
315 316 1.302383 CGCGCATAACCCAACCAAGA 61.302 55.000 8.75 0.00 0.00 3.02
316 317 1.136565 CGCGCATAACCCAACCAAG 59.863 57.895 8.75 0.00 0.00 3.61
317 318 0.678366 ATCGCGCATAACCCAACCAA 60.678 50.000 8.75 0.00 0.00 3.67
318 319 0.178301 TATCGCGCATAACCCAACCA 59.822 50.000 8.75 0.00 0.00 3.67
319 320 0.865769 CTATCGCGCATAACCCAACC 59.134 55.000 8.75 0.00 0.00 3.77
320 321 0.234884 GCTATCGCGCATAACCCAAC 59.765 55.000 8.75 0.00 0.00 3.77
321 322 0.882927 GGCTATCGCGCATAACCCAA 60.883 55.000 8.75 0.00 36.88 4.12
322 323 1.301401 GGCTATCGCGCATAACCCA 60.301 57.895 8.75 0.00 36.88 4.51
323 324 0.882927 TTGGCTATCGCGCATAACCC 60.883 55.000 8.75 1.92 36.88 4.11
324 325 0.941542 TTTGGCTATCGCGCATAACC 59.058 50.000 8.75 9.91 36.88 2.85
325 326 2.969443 ATTTGGCTATCGCGCATAAC 57.031 45.000 8.75 0.02 36.88 1.89
326 327 3.980646 AAATTTGGCTATCGCGCATAA 57.019 38.095 8.75 0.00 36.88 1.90
327 328 4.201676 CGATAAATTTGGCTATCGCGCATA 60.202 41.667 8.75 3.76 40.13 3.14
328 329 3.424829 CGATAAATTTGGCTATCGCGCAT 60.425 43.478 8.75 2.59 40.13 4.73
329 330 2.096466 CGATAAATTTGGCTATCGCGCA 60.096 45.455 8.75 0.00 40.13 6.09
330 331 2.096417 ACGATAAATTTGGCTATCGCGC 60.096 45.455 16.99 0.00 46.92 6.86
331 332 3.788434 ACGATAAATTTGGCTATCGCG 57.212 42.857 16.99 0.00 46.92 5.87
332 333 4.909880 GGAAACGATAAATTTGGCTATCGC 59.090 41.667 16.99 5.32 46.92 4.58
337 338 9.719355 AATTTTTAGGAAACGATAAATTTGGCT 57.281 25.926 0.00 0.00 0.00 4.75
338 339 9.967245 GAATTTTTAGGAAACGATAAATTTGGC 57.033 29.630 0.00 0.00 0.00 4.52
347 348 9.284968 TCTTTCTCAGAATTTTTAGGAAACGAT 57.715 29.630 0.00 0.00 0.00 3.73
348 349 8.671384 TCTTTCTCAGAATTTTTAGGAAACGA 57.329 30.769 0.00 0.00 0.00 3.85
349 350 9.730420 TTTCTTTCTCAGAATTTTTAGGAAACG 57.270 29.630 0.00 0.00 41.42 3.60
353 354 8.860088 CCCTTTTCTTTCTCAGAATTTTTAGGA 58.140 33.333 6.87 0.00 41.42 2.94
354 355 8.642432 ACCCTTTTCTTTCTCAGAATTTTTAGG 58.358 33.333 0.00 0.00 41.42 2.69
359 360 9.367160 TGATAACCCTTTTCTTTCTCAGAATTT 57.633 29.630 0.00 0.00 41.42 1.82
360 361 8.940397 TGATAACCCTTTTCTTTCTCAGAATT 57.060 30.769 0.00 0.00 41.42 2.17
361 362 7.613411 CCTGATAACCCTTTTCTTTCTCAGAAT 59.387 37.037 0.00 0.00 41.42 2.40
362 363 6.942576 CCTGATAACCCTTTTCTTTCTCAGAA 59.057 38.462 0.00 0.00 39.99 3.02
363 364 6.476378 CCTGATAACCCTTTTCTTTCTCAGA 58.524 40.000 0.00 0.00 31.49 3.27
364 365 5.649831 CCCTGATAACCCTTTTCTTTCTCAG 59.350 44.000 0.00 0.00 0.00 3.35
365 366 5.074515 ACCCTGATAACCCTTTTCTTTCTCA 59.925 40.000 0.00 0.00 0.00 3.27
366 367 5.416013 CACCCTGATAACCCTTTTCTTTCTC 59.584 44.000 0.00 0.00 0.00 2.87
367 368 5.325239 CACCCTGATAACCCTTTTCTTTCT 58.675 41.667 0.00 0.00 0.00 2.52
368 369 4.462834 CCACCCTGATAACCCTTTTCTTTC 59.537 45.833 0.00 0.00 0.00 2.62
369 370 4.416516 CCACCCTGATAACCCTTTTCTTT 58.583 43.478 0.00 0.00 0.00 2.52
370 371 3.817931 GCCACCCTGATAACCCTTTTCTT 60.818 47.826 0.00 0.00 0.00 2.52
371 372 2.291605 GCCACCCTGATAACCCTTTTCT 60.292 50.000 0.00 0.00 0.00 2.52
372 373 2.100197 GCCACCCTGATAACCCTTTTC 58.900 52.381 0.00 0.00 0.00 2.29
373 374 1.431243 TGCCACCCTGATAACCCTTTT 59.569 47.619 0.00 0.00 0.00 2.27
374 375 1.080638 TGCCACCCTGATAACCCTTT 58.919 50.000 0.00 0.00 0.00 3.11
375 376 0.331616 GTGCCACCCTGATAACCCTT 59.668 55.000 0.00 0.00 0.00 3.95
376 377 1.571773 GGTGCCACCCTGATAACCCT 61.572 60.000 1.17 0.00 30.04 4.34
377 378 1.076995 GGTGCCACCCTGATAACCC 60.077 63.158 1.17 0.00 30.04 4.11
378 379 4.657952 GGTGCCACCCTGATAACC 57.342 61.111 1.17 0.00 30.04 2.85
391 392 4.344865 TTCCTGCTTCGGGGGTGC 62.345 66.667 0.00 0.00 0.00 5.01
392 393 2.359975 GTTCCTGCTTCGGGGGTG 60.360 66.667 0.00 0.00 0.00 4.61
393 394 1.789576 AATGTTCCTGCTTCGGGGGT 61.790 55.000 0.00 0.00 0.00 4.95
394 395 1.000896 AATGTTCCTGCTTCGGGGG 60.001 57.895 0.00 0.00 0.00 5.40
395 396 0.322456 TCAATGTTCCTGCTTCGGGG 60.322 55.000 0.00 0.00 0.00 5.73
396 397 1.470098 CTTCAATGTTCCTGCTTCGGG 59.530 52.381 0.00 0.00 0.00 5.14
397 398 1.135575 GCTTCAATGTTCCTGCTTCGG 60.136 52.381 0.00 0.00 0.00 4.30
398 399 1.536766 TGCTTCAATGTTCCTGCTTCG 59.463 47.619 0.00 0.00 0.00 3.79
399 400 2.555757 AGTGCTTCAATGTTCCTGCTTC 59.444 45.455 0.00 0.00 0.00 3.86
400 401 2.590821 AGTGCTTCAATGTTCCTGCTT 58.409 42.857 0.00 0.00 0.00 3.91
401 402 2.283145 AGTGCTTCAATGTTCCTGCT 57.717 45.000 0.00 0.00 0.00 4.24
402 403 3.243501 TGAAAGTGCTTCAATGTTCCTGC 60.244 43.478 0.00 0.00 41.21 4.85
403 404 4.572985 TGAAAGTGCTTCAATGTTCCTG 57.427 40.909 0.00 0.00 41.21 3.86
412 413 4.219070 CCCATGATTCTTGAAAGTGCTTCA 59.781 41.667 0.00 0.00 42.48 3.02
413 414 4.460382 TCCCATGATTCTTGAAAGTGCTTC 59.540 41.667 0.00 0.00 34.31 3.86
414 415 4.410099 TCCCATGATTCTTGAAAGTGCTT 58.590 39.130 0.00 0.00 0.00 3.91
415 416 4.038271 TCCCATGATTCTTGAAAGTGCT 57.962 40.909 0.00 0.00 0.00 4.40
416 417 4.996788 ATCCCATGATTCTTGAAAGTGC 57.003 40.909 0.00 0.00 0.00 4.40
417 418 7.286087 TGGATTATCCCATGATTCTTGAAAGTG 59.714 37.037 8.98 0.00 35.03 3.16
418 419 7.356680 TGGATTATCCCATGATTCTTGAAAGT 58.643 34.615 8.98 0.00 35.03 2.66
419 420 7.828508 TGGATTATCCCATGATTCTTGAAAG 57.171 36.000 8.98 0.00 35.03 2.62
420 421 8.786710 ATTGGATTATCCCATGATTCTTGAAA 57.213 30.769 8.98 0.00 35.03 2.69
421 422 9.880254 TTATTGGATTATCCCATGATTCTTGAA 57.120 29.630 8.98 0.00 35.03 2.69
422 423 9.300681 GTTATTGGATTATCCCATGATTCTTGA 57.699 33.333 8.98 0.00 35.03 3.02
423 424 9.081204 TGTTATTGGATTATCCCATGATTCTTG 57.919 33.333 8.98 0.00 35.03 3.02
424 425 9.833179 ATGTTATTGGATTATCCCATGATTCTT 57.167 29.630 8.98 0.00 35.03 2.52
425 426 9.833179 AATGTTATTGGATTATCCCATGATTCT 57.167 29.630 8.98 0.00 35.03 2.40
428 429 9.039165 GGAAATGTTATTGGATTATCCCATGAT 57.961 33.333 8.98 0.94 35.03 2.45
429 430 8.233820 AGGAAATGTTATTGGATTATCCCATGA 58.766 33.333 8.98 0.00 35.03 3.07
430 431 8.308931 CAGGAAATGTTATTGGATTATCCCATG 58.691 37.037 8.98 0.00 35.03 3.66
431 432 8.012477 ACAGGAAATGTTATTGGATTATCCCAT 58.988 33.333 8.98 5.92 39.96 4.00
432 433 7.287466 CACAGGAAATGTTATTGGATTATCCCA 59.713 37.037 8.98 0.00 41.41 4.37
433 434 7.287696 ACACAGGAAATGTTATTGGATTATCCC 59.712 37.037 8.98 0.00 41.41 3.85
434 435 8.237811 ACACAGGAAATGTTATTGGATTATCC 57.762 34.615 3.91 3.91 41.41 2.59
436 437 9.874205 CAAACACAGGAAATGTTATTGGATTAT 57.126 29.630 0.00 0.00 41.41 1.28
441 442 6.095432 TCCAAACACAGGAAATGTTATTGG 57.905 37.500 12.24 12.24 46.81 3.16
451 452 7.826252 TGAATTTTTCATTTCCAAACACAGGAA 59.174 29.630 0.00 0.00 37.81 3.36
452 453 7.334090 TGAATTTTTCATTTCCAAACACAGGA 58.666 30.769 0.00 0.00 34.08 3.86
453 454 7.551035 TGAATTTTTCATTTCCAAACACAGG 57.449 32.000 0.00 0.00 34.08 4.00
472 473 9.143631 GCTTACTTATTGAGTTTGCAATGAATT 57.856 29.630 0.00 0.00 38.80 2.17
473 474 8.306038 TGCTTACTTATTGAGTTTGCAATGAAT 58.694 29.630 0.00 0.00 40.15 2.57
474 475 7.656412 TGCTTACTTATTGAGTTTGCAATGAA 58.344 30.769 0.00 0.00 40.15 2.57
475 476 7.213216 TGCTTACTTATTGAGTTTGCAATGA 57.787 32.000 0.00 0.00 40.15 2.57
476 477 7.872163 TTGCTTACTTATTGAGTTTGCAATG 57.128 32.000 0.00 0.00 43.61 2.82
479 480 7.432869 ACAATTGCTTACTTATTGAGTTTGCA 58.567 30.769 5.05 4.80 40.81 4.08
480 481 7.873739 ACAATTGCTTACTTATTGAGTTTGC 57.126 32.000 5.05 0.00 39.86 3.68
483 484 9.816354 ACAAAACAATTGCTTACTTATTGAGTT 57.184 25.926 5.05 0.00 39.86 3.01
484 485 9.816354 AACAAAACAATTGCTTACTTATTGAGT 57.184 25.926 5.05 0.00 42.55 3.41
486 487 9.809096 TCAACAAAACAATTGCTTACTTATTGA 57.191 25.926 5.05 3.50 34.28 2.57
489 490 9.762933 ACATCAACAAAACAATTGCTTACTTAT 57.237 25.926 5.05 0.00 0.00 1.73
491 492 9.593134 TTACATCAACAAAACAATTGCTTACTT 57.407 25.926 5.05 0.00 0.00 2.24
492 493 9.248291 CTTACATCAACAAAACAATTGCTTACT 57.752 29.630 5.05 0.00 0.00 2.24
493 494 9.030301 ACTTACATCAACAAAACAATTGCTTAC 57.970 29.630 5.05 0.00 0.00 2.34
494 495 9.593134 AACTTACATCAACAAAACAATTGCTTA 57.407 25.926 5.05 0.00 0.00 3.09
495 496 8.491331 AACTTACATCAACAAAACAATTGCTT 57.509 26.923 5.05 0.00 0.00 3.91
496 497 8.491331 AAACTTACATCAACAAAACAATTGCT 57.509 26.923 5.05 0.00 0.00 3.91
497 498 9.553418 AAAAACTTACATCAACAAAACAATTGC 57.447 25.926 5.05 0.00 0.00 3.56
521 522 5.877491 AGTTTGGTGGTTTGGGTTTAAAAA 58.123 33.333 0.00 0.00 0.00 1.94
522 523 5.500546 AGTTTGGTGGTTTGGGTTTAAAA 57.499 34.783 0.00 0.00 0.00 1.52
523 524 5.500546 AAGTTTGGTGGTTTGGGTTTAAA 57.499 34.783 0.00 0.00 0.00 1.52
524 525 5.500546 AAAGTTTGGTGGTTTGGGTTTAA 57.499 34.783 0.00 0.00 0.00 1.52
525 526 5.500546 AAAAGTTTGGTGGTTTGGGTTTA 57.499 34.783 0.00 0.00 0.00 2.01
526 527 4.374689 AAAAGTTTGGTGGTTTGGGTTT 57.625 36.364 0.00 0.00 0.00 3.27
527 528 4.374689 AAAAAGTTTGGTGGTTTGGGTT 57.625 36.364 0.00 0.00 0.00 4.11
545 546 6.864342 TCGGAAGAACATTGTAAACCAAAAA 58.136 32.000 0.00 0.00 34.80 1.94
546 547 6.452494 TCGGAAGAACATTGTAAACCAAAA 57.548 33.333 0.00 0.00 34.80 2.44
547 548 5.506649 GCTCGGAAGAACATTGTAAACCAAA 60.507 40.000 0.00 0.00 41.32 3.28
548 549 4.023536 GCTCGGAAGAACATTGTAAACCAA 60.024 41.667 0.00 0.00 41.32 3.67
549 550 3.500680 GCTCGGAAGAACATTGTAAACCA 59.499 43.478 0.00 0.00 41.32 3.67
550 551 3.500680 TGCTCGGAAGAACATTGTAAACC 59.499 43.478 0.00 0.00 41.32 3.27
551 552 4.742438 TGCTCGGAAGAACATTGTAAAC 57.258 40.909 0.00 0.00 41.32 2.01
552 553 5.957842 ATTGCTCGGAAGAACATTGTAAA 57.042 34.783 0.00 0.00 41.32 2.01
553 554 5.957842 AATTGCTCGGAAGAACATTGTAA 57.042 34.783 0.00 0.00 41.32 2.41
554 555 6.312918 GTCTAATTGCTCGGAAGAACATTGTA 59.687 38.462 0.00 0.00 41.32 2.41
555 556 5.122396 GTCTAATTGCTCGGAAGAACATTGT 59.878 40.000 0.00 0.00 41.32 2.71
556 557 5.122239 TGTCTAATTGCTCGGAAGAACATTG 59.878 40.000 0.00 0.00 41.32 2.82
557 558 5.122396 GTGTCTAATTGCTCGGAAGAACATT 59.878 40.000 0.00 0.00 41.32 2.71
558 559 4.631813 GTGTCTAATTGCTCGGAAGAACAT 59.368 41.667 0.00 0.00 41.32 2.71
559 560 3.994392 GTGTCTAATTGCTCGGAAGAACA 59.006 43.478 0.00 0.00 41.32 3.18
560 561 4.092091 CAGTGTCTAATTGCTCGGAAGAAC 59.908 45.833 0.00 0.00 41.32 3.01
561 562 4.245660 CAGTGTCTAATTGCTCGGAAGAA 58.754 43.478 0.00 0.00 41.32 2.52
562 563 3.368427 CCAGTGTCTAATTGCTCGGAAGA 60.368 47.826 0.00 0.00 39.12 2.87
563 564 2.932614 CCAGTGTCTAATTGCTCGGAAG 59.067 50.000 0.00 0.00 0.00 3.46
564 565 2.354704 CCCAGTGTCTAATTGCTCGGAA 60.355 50.000 0.00 0.00 0.00 4.30
565 566 1.207089 CCCAGTGTCTAATTGCTCGGA 59.793 52.381 0.00 0.00 0.00 4.55
566 567 1.656652 CCCAGTGTCTAATTGCTCGG 58.343 55.000 0.00 0.00 0.00 4.63
567 568 1.009829 GCCCAGTGTCTAATTGCTCG 58.990 55.000 0.00 0.00 0.00 5.03
568 569 2.012673 CTGCCCAGTGTCTAATTGCTC 58.987 52.381 0.00 0.00 0.00 4.26
569 570 1.952367 GCTGCCCAGTGTCTAATTGCT 60.952 52.381 0.00 0.00 0.00 3.91
570 571 0.453390 GCTGCCCAGTGTCTAATTGC 59.547 55.000 0.00 0.00 0.00 3.56
571 572 1.741706 CTGCTGCCCAGTGTCTAATTG 59.258 52.381 0.00 0.00 36.79 2.32
572 573 2.119801 CTGCTGCCCAGTGTCTAATT 57.880 50.000 0.00 0.00 36.79 1.40
573 574 3.869623 CTGCTGCCCAGTGTCTAAT 57.130 52.632 0.00 0.00 36.79 1.73
582 583 0.606130 CACATGTGTACTGCTGCCCA 60.606 55.000 18.03 0.00 0.00 5.36
583 584 0.606401 ACACATGTGTACTGCTGCCC 60.606 55.000 29.66 0.00 42.90 5.36
584 585 0.798776 GACACATGTGTACTGCTGCC 59.201 55.000 30.63 12.46 45.05 4.85
585 586 0.798776 GGACACATGTGTACTGCTGC 59.201 55.000 30.32 16.74 45.05 5.25
591 592 4.021368 AGGTTGTAGAGGACACATGTGTAC 60.021 45.833 30.45 30.45 45.05 2.90
592 593 4.157246 AGGTTGTAGAGGACACATGTGTA 58.843 43.478 30.63 12.86 45.05 2.90
594 595 3.685139 AGGTTGTAGAGGACACATGTG 57.315 47.619 24.25 24.25 37.96 3.21
595 596 4.157246 TGTAGGTTGTAGAGGACACATGT 58.843 43.478 0.00 0.00 37.96 3.21
596 597 4.801330 TGTAGGTTGTAGAGGACACATG 57.199 45.455 0.00 0.00 37.96 3.21
597 598 4.162320 CCATGTAGGTTGTAGAGGACACAT 59.838 45.833 0.00 0.00 37.96 3.21
598 599 3.513912 CCATGTAGGTTGTAGAGGACACA 59.486 47.826 0.00 0.00 37.96 3.72
599 600 3.679083 GCCATGTAGGTTGTAGAGGACAC 60.679 52.174 0.00 0.00 40.61 3.67
600 601 2.500098 GCCATGTAGGTTGTAGAGGACA 59.500 50.000 0.00 0.00 40.61 4.02
601 602 2.500098 TGCCATGTAGGTTGTAGAGGAC 59.500 50.000 0.00 0.00 40.61 3.85
602 603 2.827755 TGCCATGTAGGTTGTAGAGGA 58.172 47.619 0.00 0.00 40.61 3.71
603 604 3.627395 TTGCCATGTAGGTTGTAGAGG 57.373 47.619 0.00 0.00 40.61 3.69
604 605 4.142600 GCTTTTGCCATGTAGGTTGTAGAG 60.143 45.833 0.00 0.00 40.61 2.43
605 606 3.756434 GCTTTTGCCATGTAGGTTGTAGA 59.244 43.478 0.00 0.00 40.61 2.59
606 607 4.096732 GCTTTTGCCATGTAGGTTGTAG 57.903 45.455 0.00 0.00 40.61 2.74
620 621 4.048504 ACACTCAAAAATACGGCTTTTGC 58.951 39.130 11.73 0.00 41.48 3.68
621 622 6.254589 TCAAACACTCAAAAATACGGCTTTTG 59.745 34.615 10.78 10.78 42.54 2.44
622 623 6.254804 GTCAAACACTCAAAAATACGGCTTTT 59.745 34.615 0.00 0.00 0.00 2.27
623 624 5.746721 GTCAAACACTCAAAAATACGGCTTT 59.253 36.000 0.00 0.00 0.00 3.51
624 625 5.163602 TGTCAAACACTCAAAAATACGGCTT 60.164 36.000 0.00 0.00 0.00 4.35
625 626 4.336993 TGTCAAACACTCAAAAATACGGCT 59.663 37.500 0.00 0.00 0.00 5.52
626 627 4.602995 TGTCAAACACTCAAAAATACGGC 58.397 39.130 0.00 0.00 0.00 5.68
627 628 7.513190 TTTTGTCAAACACTCAAAAATACGG 57.487 32.000 0.00 0.00 37.86 4.02
998 1054 3.676605 TCGGCCACGACGACATGT 61.677 61.111 2.24 0.00 45.59 3.21
1064 1120 1.836166 AGTACTCCATCTGCATGCTGT 59.164 47.619 20.33 6.55 0.00 4.40
1325 1400 0.387622 CAGTGCCTTCAAATGCCACG 60.388 55.000 0.00 0.00 0.00 4.94
1514 1595 7.611467 TGTTTCATATGTTTCCAGTGCTCTTAT 59.389 33.333 1.90 0.00 0.00 1.73
1629 1745 4.957759 GTGAACACCACAGTTAACAAGT 57.042 40.909 8.61 3.07 45.03 3.16
1661 1781 6.947733 AGTTCACACCATCCTGAAAATCAATA 59.052 34.615 0.00 0.00 0.00 1.90
1841 1961 3.306641 GGCTATACTGATTGGCCAGAGAG 60.307 52.174 5.11 5.44 42.08 3.20
1908 2028 4.201891 GCAGTCCATGTCATGAGATTTGAC 60.202 45.833 14.67 17.97 43.04 3.18
2066 2186 0.463620 TGGCCTTCCTTGTGTTTTGC 59.536 50.000 3.32 0.00 0.00 3.68
2228 2352 6.956435 TCATATATACTGACCATCCAGAGCTT 59.044 38.462 0.00 0.00 37.59 3.74
2431 2570 9.835389 TTAGTTCTTAACTTAACTTAGCACCAA 57.165 29.630 0.00 0.00 42.81 3.67
2698 2837 6.019479 CAGTTCTGTCAGTTTAGTTCTGTCAC 60.019 42.308 0.00 0.00 34.86 3.67
2701 2840 6.222038 TCAGTTCTGTCAGTTTAGTTCTGT 57.778 37.500 0.00 0.00 34.86 3.41
2702 2841 7.655328 AGATTCAGTTCTGTCAGTTTAGTTCTG 59.345 37.037 0.00 0.00 0.00 3.02
2703 2842 7.731054 AGATTCAGTTCTGTCAGTTTAGTTCT 58.269 34.615 0.00 0.00 0.00 3.01
2704 2843 7.653713 TGAGATTCAGTTCTGTCAGTTTAGTTC 59.346 37.037 0.00 0.00 0.00 3.01
2705 2844 7.439655 GTGAGATTCAGTTCTGTCAGTTTAGTT 59.560 37.037 0.00 0.00 0.00 2.24
2706 2845 6.926272 GTGAGATTCAGTTCTGTCAGTTTAGT 59.074 38.462 0.00 0.00 0.00 2.24
2707 2846 6.925718 TGTGAGATTCAGTTCTGTCAGTTTAG 59.074 38.462 0.00 0.00 0.00 1.85
2740 2893 3.868757 TCAGTTACAGCAGTTATCGCT 57.131 42.857 0.00 0.00 41.47 4.93
2799 2952 1.153647 CGGTCAGGTCGCATAGCAA 60.154 57.895 0.00 0.00 0.00 3.91
2922 3075 1.524621 CAGATCATCGCCCCACCAC 60.525 63.158 0.00 0.00 0.00 4.16
3022 3175 4.166888 GGCGATGCTGGGCAGAGA 62.167 66.667 0.00 0.00 43.65 3.10
3060 3213 1.441738 CATCGACATGTTGCTGTGGA 58.558 50.000 8.34 0.00 38.09 4.02
3140 3293 0.827368 GAGGTGAGGAAGAAGGCGAT 59.173 55.000 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.