Multiple sequence alignment - TraesCS6D01G052600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G052600 chr6D 100.000 2513 0 0 1 2513 25019091 25016579 0.000000e+00 4641.0
1 TraesCS6D01G052600 chr6D 89.166 2003 171 23 322 2310 25300874 25298904 0.000000e+00 2455.0
2 TraesCS6D01G052600 chr6D 80.311 1158 189 24 474 1603 7901393 7902539 0.000000e+00 839.0
3 TraesCS6D01G052600 chr6D 79.541 1046 173 34 477 1504 7404832 7403810 0.000000e+00 708.0
4 TraesCS6D01G052600 chr6D 91.410 454 26 10 2016 2457 24601655 24602107 5.940000e-171 610.0
5 TraesCS6D01G052600 chr6D 83.513 558 29 13 7 563 24601158 24601653 1.760000e-126 462.0
6 TraesCS6D01G052600 chr6D 76.289 679 126 23 870 1527 7729142 7729806 1.860000e-86 329.0
7 TraesCS6D01G052600 chr6D 83.082 331 45 8 2131 2459 7413685 7413364 8.790000e-75 291.0
8 TraesCS6D01G052600 chr6B 93.423 1414 55 17 276 1682 40658546 40657164 0.000000e+00 2061.0
9 TraesCS6D01G052600 chr6B 91.093 1089 64 8 1375 2457 40715843 40714782 0.000000e+00 1443.0
10 TraesCS6D01G052600 chr6B 85.952 1203 132 10 901 2092 41228583 41227407 0.000000e+00 1251.0
11 TraesCS6D01G052600 chr6B 88.372 1075 70 13 1358 2428 40791297 40790274 0.000000e+00 1242.0
12 TraesCS6D01G052600 chr6B 94.504 564 24 1 803 1359 40716547 40715984 0.000000e+00 863.0
13 TraesCS6D01G052600 chr6B 93.686 491 24 3 886 1369 40791807 40791317 0.000000e+00 728.0
14 TraesCS6D01G052600 chr6B 93.224 487 23 4 1975 2457 40657093 40656613 0.000000e+00 708.0
15 TraesCS6D01G052600 chr6B 77.619 1260 208 50 305 1529 14340428 14341648 0.000000e+00 697.0
16 TraesCS6D01G052600 chr6B 76.514 1354 259 39 309 1626 13934117 13932787 0.000000e+00 684.0
17 TraesCS6D01G052600 chr6B 77.778 1053 198 26 477 1503 54422133 54421091 1.280000e-172 616.0
18 TraesCS6D01G052600 chr6B 76.239 1069 226 18 477 1529 14622602 14621546 2.200000e-150 542.0
19 TraesCS6D01G052600 chr6B 91.071 168 9 6 2256 2419 41227397 41227232 3.250000e-54 222.0
20 TraesCS6D01G052600 chr6B 94.262 122 7 0 301 422 40792759 40792638 1.190000e-43 187.0
21 TraesCS6D01G052600 chr6B 93.151 73 5 0 1735 1807 40657169 40657097 9.510000e-20 108.0
22 TraesCS6D01G052600 chr6B 96.825 63 2 0 2451 2513 40714306 40714244 3.420000e-19 106.0
23 TraesCS6D01G052600 chr6B 96.825 63 2 0 2451 2513 40789799 40789737 3.420000e-19 106.0
24 TraesCS6D01G052600 chr6B 96.774 62 2 0 2451 2512 40656060 40655999 1.230000e-18 104.0
25 TraesCS6D01G052600 chr6A 92.916 734 36 10 1685 2404 23229276 23230007 0.000000e+00 1053.0
26 TraesCS6D01G052600 chr6A 92.146 713 31 7 298 1002 23228196 23228891 0.000000e+00 983.0
27 TraesCS6D01G052600 chr6A 80.738 867 149 15 473 1322 7300764 7299899 0.000000e+00 660.0
28 TraesCS6D01G052600 chr6A 75.162 1232 248 41 318 1519 8212558 8211355 6.160000e-146 527.0
29 TraesCS6D01G052600 chr6A 93.846 260 16 0 1422 1681 23228912 23229171 2.340000e-105 392.0
30 TraesCS6D01G052600 chr6A 90.909 66 2 1 2451 2512 23230571 23230636 4.450000e-13 86.1
31 TraesCS6D01G052600 chr6A 100.000 31 0 0 2427 2457 23230010 23230040 9.710000e-05 58.4
32 TraesCS6D01G052600 chr7A 78.084 1232 215 37 288 1493 657024871 657023669 0.000000e+00 728.0
33 TraesCS6D01G052600 chr7B 78.140 1226 209 38 288 1489 623951381 623950191 0.000000e+00 725.0
34 TraesCS6D01G052600 chr7D 77.843 1196 207 40 326 1493 568371559 568370394 0.000000e+00 688.0
35 TraesCS6D01G052600 chr4D 76.827 1122 220 26 412 1517 449974967 449973870 1.660000e-166 595.0
36 TraesCS6D01G052600 chr4D 74.654 217 34 15 2081 2291 449973501 449973300 2.680000e-10 76.8
37 TraesCS6D01G052600 chr4B 76.560 1122 223 26 412 1517 562701445 562700348 1.680000e-161 579.0
38 TraesCS6D01G052600 chrUn 75.738 1253 232 49 305 1521 102006654 102005438 4.690000e-157 564.0
39 TraesCS6D01G052600 chr1D 76.493 1055 208 31 477 1503 477165807 477166849 2.840000e-149 538.0
40 TraesCS6D01G052600 chr2A 84.036 332 39 11 2131 2459 16649531 16649211 8.730000e-80 307.0
41 TraesCS6D01G052600 chr2B 75.806 310 44 23 325 631 89504132 89504413 7.300000e-26 128.0
42 TraesCS6D01G052600 chr3B 88.136 59 7 0 2131 2189 761045739 761045681 1.250000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G052600 chr6D 25016579 25019091 2512 True 4641.00 4641 100.000000 1 2513 1 chr6D.!!$R3 2512
1 TraesCS6D01G052600 chr6D 25298904 25300874 1970 True 2455.00 2455 89.166000 322 2310 1 chr6D.!!$R4 1988
2 TraesCS6D01G052600 chr6D 7901393 7902539 1146 False 839.00 839 80.311000 474 1603 1 chr6D.!!$F2 1129
3 TraesCS6D01G052600 chr6D 7403810 7404832 1022 True 708.00 708 79.541000 477 1504 1 chr6D.!!$R1 1027
4 TraesCS6D01G052600 chr6D 24601158 24602107 949 False 536.00 610 87.461500 7 2457 2 chr6D.!!$F3 2450
5 TraesCS6D01G052600 chr6D 7729142 7729806 664 False 329.00 329 76.289000 870 1527 1 chr6D.!!$F1 657
6 TraesCS6D01G052600 chr6B 40714244 40716547 2303 True 804.00 1443 94.140667 803 2513 3 chr6B.!!$R5 1710
7 TraesCS6D01G052600 chr6B 40655999 40658546 2547 True 745.25 2061 94.143000 276 2512 4 chr6B.!!$R4 2236
8 TraesCS6D01G052600 chr6B 41227232 41228583 1351 True 736.50 1251 88.511500 901 2419 2 chr6B.!!$R7 1518
9 TraesCS6D01G052600 chr6B 14340428 14341648 1220 False 697.00 697 77.619000 305 1529 1 chr6B.!!$F1 1224
10 TraesCS6D01G052600 chr6B 13932787 13934117 1330 True 684.00 684 76.514000 309 1626 1 chr6B.!!$R1 1317
11 TraesCS6D01G052600 chr6B 54421091 54422133 1042 True 616.00 616 77.778000 477 1503 1 chr6B.!!$R3 1026
12 TraesCS6D01G052600 chr6B 40789737 40792759 3022 True 565.75 1242 93.286250 301 2513 4 chr6B.!!$R6 2212
13 TraesCS6D01G052600 chr6B 14621546 14622602 1056 True 542.00 542 76.239000 477 1529 1 chr6B.!!$R2 1052
14 TraesCS6D01G052600 chr6A 7299899 7300764 865 True 660.00 660 80.738000 473 1322 1 chr6A.!!$R1 849
15 TraesCS6D01G052600 chr6A 8211355 8212558 1203 True 527.00 527 75.162000 318 1519 1 chr6A.!!$R2 1201
16 TraesCS6D01G052600 chr6A 23228196 23230636 2440 False 514.50 1053 93.963400 298 2512 5 chr6A.!!$F1 2214
17 TraesCS6D01G052600 chr7A 657023669 657024871 1202 True 728.00 728 78.084000 288 1493 1 chr7A.!!$R1 1205
18 TraesCS6D01G052600 chr7B 623950191 623951381 1190 True 725.00 725 78.140000 288 1489 1 chr7B.!!$R1 1201
19 TraesCS6D01G052600 chr7D 568370394 568371559 1165 True 688.00 688 77.843000 326 1493 1 chr7D.!!$R1 1167
20 TraesCS6D01G052600 chr4D 449973300 449974967 1667 True 335.90 595 75.740500 412 2291 2 chr4D.!!$R1 1879
21 TraesCS6D01G052600 chr4B 562700348 562701445 1097 True 579.00 579 76.560000 412 1517 1 chr4B.!!$R1 1105
22 TraesCS6D01G052600 chrUn 102005438 102006654 1216 True 564.00 564 75.738000 305 1521 1 chrUn.!!$R1 1216
23 TraesCS6D01G052600 chr1D 477165807 477166849 1042 False 538.00 538 76.493000 477 1503 1 chr1D.!!$F1 1026

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.033405 ATCAGCTGAATGGCTTGGCT 60.033 50.0 22.5 0.0 41.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1844 2732 0.178975 AAATTCCAGTTGGTCGGCCA 60.179 50.0 3.51 3.51 44.38 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 4.301072 AAAAAGGCCTACATGTAGCTCA 57.699 40.909 24.85 0.00 31.95 4.26
82 83 3.550437 AAAGGCCTACATGTAGCTCAG 57.450 47.619 24.85 13.60 31.95 3.35
83 84 2.461300 AGGCCTACATGTAGCTCAGA 57.539 50.000 24.85 0.00 31.95 3.27
84 85 2.969628 AGGCCTACATGTAGCTCAGAT 58.030 47.619 24.85 6.43 31.95 2.90
85 86 2.896685 AGGCCTACATGTAGCTCAGATC 59.103 50.000 24.85 9.74 31.95 2.75
86 87 2.630098 GGCCTACATGTAGCTCAGATCA 59.370 50.000 24.85 0.00 31.95 2.92
87 88 3.305950 GGCCTACATGTAGCTCAGATCAG 60.306 52.174 24.85 10.67 31.95 2.90
88 89 3.860378 GCCTACATGTAGCTCAGATCAGC 60.860 52.174 24.85 15.96 39.99 4.26
100 101 2.054232 AGATCAGCTGAATGGCTTGG 57.946 50.000 22.50 0.00 41.00 3.61
101 102 0.384669 GATCAGCTGAATGGCTTGGC 59.615 55.000 22.50 0.00 41.00 4.52
102 103 0.033405 ATCAGCTGAATGGCTTGGCT 60.033 50.000 22.50 0.00 41.00 4.75
105 106 1.820519 CAGCTGAATGGCTTGGCTTAA 59.179 47.619 8.42 0.00 41.00 1.85
116 117 3.056304 GCTTGGCTTAAACAAATTCGCA 58.944 40.909 0.00 0.00 0.00 5.10
119 120 3.637432 TGGCTTAAACAAATTCGCACTG 58.363 40.909 0.00 0.00 0.00 3.66
139 140 0.682209 ATGAATGGCTTGGCTTCGCT 60.682 50.000 0.00 0.00 0.00 4.93
140 141 1.308069 TGAATGGCTTGGCTTCGCTC 61.308 55.000 0.00 0.00 0.00 5.03
141 142 1.303561 AATGGCTTGGCTTCGCTCA 60.304 52.632 0.00 0.00 0.00 4.26
142 143 1.310933 AATGGCTTGGCTTCGCTCAG 61.311 55.000 0.00 0.00 0.00 3.35
143 144 2.046892 GGCTTGGCTTCGCTCAGA 60.047 61.111 0.00 0.00 0.00 3.27
159 160 4.436584 CGCTCAGATCAGATGTTGGTTTTC 60.437 45.833 0.00 0.00 0.00 2.29
174 175 2.044135 GTTTTCTTTTCTTGGAGCGCG 58.956 47.619 0.00 0.00 0.00 6.86
180 181 4.742201 TCTTGGAGCGCGTGGAGC 62.742 66.667 8.43 0.00 43.95 4.70
195 196 1.172812 GGAGCGACAAGTTGGGCTTT 61.173 55.000 20.32 4.41 34.69 3.51
221 222 2.548493 CCCATTTTGCTCACAAGTTGGG 60.548 50.000 7.96 2.56 45.63 4.12
222 223 2.102925 CCATTTTGCTCACAAGTTGGGT 59.897 45.455 4.74 0.00 36.62 4.51
223 224 3.432046 CCATTTTGCTCACAAGTTGGGTT 60.432 43.478 4.74 0.00 36.62 4.11
224 225 3.971245 TTTTGCTCACAAGTTGGGTTT 57.029 38.095 4.74 0.00 37.04 3.27
225 226 3.518634 TTTGCTCACAAGTTGGGTTTC 57.481 42.857 4.74 0.00 37.04 2.78
226 227 2.435372 TGCTCACAAGTTGGGTTTCT 57.565 45.000 4.74 0.00 0.00 2.52
227 228 2.297701 TGCTCACAAGTTGGGTTTCTC 58.702 47.619 4.74 0.00 0.00 2.87
228 229 2.092429 TGCTCACAAGTTGGGTTTCTCT 60.092 45.455 4.74 0.00 0.00 3.10
229 230 2.550180 GCTCACAAGTTGGGTTTCTCTC 59.450 50.000 4.74 0.00 0.00 3.20
230 231 3.745797 GCTCACAAGTTGGGTTTCTCTCT 60.746 47.826 4.74 0.00 0.00 3.10
231 232 3.808728 TCACAAGTTGGGTTTCTCTCTG 58.191 45.455 4.74 0.00 0.00 3.35
232 233 2.880890 CACAAGTTGGGTTTCTCTCTGG 59.119 50.000 7.96 0.00 0.00 3.86
233 234 2.509964 ACAAGTTGGGTTTCTCTCTGGT 59.490 45.455 7.96 0.00 0.00 4.00
234 235 2.880890 CAAGTTGGGTTTCTCTCTGGTG 59.119 50.000 0.00 0.00 0.00 4.17
235 236 1.202818 AGTTGGGTTTCTCTCTGGTGC 60.203 52.381 0.00 0.00 0.00 5.01
252 253 2.938253 CGTCGCTGCAAAGCTTCA 59.062 55.556 0.00 0.00 0.00 3.02
255 256 1.227943 TCGCTGCAAAGCTTCACCT 60.228 52.632 0.00 0.00 0.00 4.00
265 266 0.111061 AGCTTCACCTGCCAATCACA 59.889 50.000 0.00 0.00 0.00 3.58
267 268 1.068055 GCTTCACCTGCCAATCACAAG 60.068 52.381 0.00 0.00 0.00 3.16
268 269 2.233271 CTTCACCTGCCAATCACAAGT 58.767 47.619 0.00 0.00 0.00 3.16
269 270 2.363306 TCACCTGCCAATCACAAGTT 57.637 45.000 0.00 0.00 0.00 2.66
281 282 1.980765 TCACAAGTTGGGCATCTCTCT 59.019 47.619 7.96 0.00 0.00 3.10
419 442 0.267356 CAGATCCCCTTCCCCTCTCT 59.733 60.000 0.00 0.00 0.00 3.10
1263 1908 1.089481 TTGCTCATCGACCGGCAATC 61.089 55.000 0.00 0.00 39.33 2.67
1282 1927 1.203187 TCCTCACTTACAGCCTGGAGT 60.203 52.381 0.00 0.00 0.00 3.85
1308 1953 0.674534 CCAGACCCCGCTACTATGTC 59.325 60.000 0.00 0.00 0.00 3.06
1341 1986 2.603075 AGGAAAATGGGTTGCTAGCA 57.397 45.000 14.93 14.93 0.00 3.49
1546 2318 3.263261 TGTGACAGTGCGACAAAGTTTA 58.737 40.909 0.00 0.00 0.00 2.01
1616 2388 3.754965 ACTAGATGCTGTTTTTCTGCCA 58.245 40.909 0.00 0.00 39.70 4.92
1626 2398 5.565439 GCTGTTTTTCTGCCATGTTAGATGT 60.565 40.000 0.00 0.00 35.43 3.06
1720 2607 7.378181 GTGGATTGGTTATGAACTTGTTCATT 58.622 34.615 27.05 13.04 41.50 2.57
1807 2695 7.286087 TGCAATGCATTAATTTCTCTATCCTGT 59.714 33.333 12.53 0.00 31.71 4.00
1808 2696 8.139989 GCAATGCATTAATTTCTCTATCCTGTT 58.860 33.333 12.53 0.00 0.00 3.16
1818 2706 8.814038 ATTTCTCTATCCTGTTTTACATTGCT 57.186 30.769 0.00 0.00 0.00 3.91
1819 2707 8.635765 TTTCTCTATCCTGTTTTACATTGCTT 57.364 30.769 0.00 0.00 0.00 3.91
1820 2708 9.733556 TTTCTCTATCCTGTTTTACATTGCTTA 57.266 29.630 0.00 0.00 0.00 3.09
1821 2709 9.905713 TTCTCTATCCTGTTTTACATTGCTTAT 57.094 29.630 0.00 0.00 0.00 1.73
1822 2710 9.547753 TCTCTATCCTGTTTTACATTGCTTATC 57.452 33.333 0.00 0.00 0.00 1.75
1823 2711 8.365399 TCTATCCTGTTTTACATTGCTTATCG 57.635 34.615 0.00 0.00 0.00 2.92
1824 2712 5.229921 TCCTGTTTTACATTGCTTATCGC 57.770 39.130 0.00 0.00 39.77 4.58
1825 2713 4.095782 TCCTGTTTTACATTGCTTATCGCC 59.904 41.667 0.00 0.00 38.05 5.54
1826 2714 4.351192 CTGTTTTACATTGCTTATCGCCC 58.649 43.478 0.00 0.00 38.05 6.13
1827 2715 3.181505 TGTTTTACATTGCTTATCGCCCG 60.182 43.478 0.00 0.00 38.05 6.13
1828 2716 1.588674 TTACATTGCTTATCGCCCGG 58.411 50.000 0.00 0.00 38.05 5.73
1831 2719 2.186826 ATTGCTTATCGCCCGGCAC 61.187 57.895 10.77 0.00 38.05 5.01
1834 2722 2.815308 CTTATCGCCCGGCACTCT 59.185 61.111 10.77 0.00 0.00 3.24
1837 2725 1.000955 CTTATCGCCCGGCACTCTATT 59.999 52.381 10.77 0.00 0.00 1.73
1839 2727 1.267121 ATCGCCCGGCACTCTATTAT 58.733 50.000 10.77 0.00 0.00 1.28
1840 2728 1.913778 TCGCCCGGCACTCTATTATA 58.086 50.000 10.77 0.00 0.00 0.98
1841 2729 1.542915 TCGCCCGGCACTCTATTATAC 59.457 52.381 10.77 0.00 0.00 1.47
1843 2731 2.685100 GCCCGGCACTCTATTATACAC 58.315 52.381 3.91 0.00 0.00 2.90
1844 2732 2.299297 GCCCGGCACTCTATTATACACT 59.701 50.000 3.91 0.00 0.00 3.55
1846 2734 3.306088 CCCGGCACTCTATTATACACTGG 60.306 52.174 0.00 0.00 0.00 4.00
1849 2737 3.318017 GCACTCTATTATACACTGGCCG 58.682 50.000 0.00 0.00 0.00 6.13
1850 2738 3.005472 GCACTCTATTATACACTGGCCGA 59.995 47.826 0.00 0.00 0.00 5.54
1851 2739 4.547532 CACTCTATTATACACTGGCCGAC 58.452 47.826 0.00 0.00 0.00 4.79
1852 2740 3.573110 ACTCTATTATACACTGGCCGACC 59.427 47.826 0.00 0.00 0.00 4.79
1853 2741 3.568443 TCTATTATACACTGGCCGACCA 58.432 45.455 0.00 0.00 46.51 4.02
1862 2750 1.458486 TGGCCGACCAACTGGAATT 59.542 52.632 1.86 0.00 45.37 2.17
1863 2751 0.178975 TGGCCGACCAACTGGAATTT 60.179 50.000 1.86 0.00 45.37 1.82
1864 2752 0.966179 GGCCGACCAACTGGAATTTT 59.034 50.000 1.86 0.00 38.94 1.82
1865 2753 1.336795 GGCCGACCAACTGGAATTTTG 60.337 52.381 1.86 0.00 38.94 2.44
1866 2754 1.336795 GCCGACCAACTGGAATTTTGG 60.337 52.381 1.86 5.28 46.72 3.28
1871 2759 3.665745 CCAACTGGAATTTTGGTCCTG 57.334 47.619 0.00 0.00 37.98 3.86
1872 2760 2.965147 CCAACTGGAATTTTGGTCCTGT 59.035 45.455 0.00 0.00 46.03 4.00
1873 2761 3.243839 CCAACTGGAATTTTGGTCCTGTG 60.244 47.826 4.06 0.40 44.05 3.66
1874 2762 3.312736 ACTGGAATTTTGGTCCTGTGT 57.687 42.857 2.59 0.00 43.42 3.72
1875 2763 3.642141 ACTGGAATTTTGGTCCTGTGTT 58.358 40.909 2.59 0.00 43.42 3.32
1876 2764 3.636764 ACTGGAATTTTGGTCCTGTGTTC 59.363 43.478 2.59 0.00 43.42 3.18
1879 2767 5.450453 TGGAATTTTGGTCCTGTGTTCTAA 58.550 37.500 0.00 0.00 36.03 2.10
1880 2768 5.894393 TGGAATTTTGGTCCTGTGTTCTAAA 59.106 36.000 0.00 0.00 36.03 1.85
1881 2769 6.040391 TGGAATTTTGGTCCTGTGTTCTAAAG 59.960 38.462 0.00 0.00 36.03 1.85
1883 2771 3.857157 TTGGTCCTGTGTTCTAAAGCT 57.143 42.857 0.00 0.00 0.00 3.74
1884 2772 3.857157 TGGTCCTGTGTTCTAAAGCTT 57.143 42.857 0.00 0.00 0.00 3.74
1885 2773 3.740115 TGGTCCTGTGTTCTAAAGCTTC 58.260 45.455 0.00 0.00 0.00 3.86
1888 2776 5.071250 TGGTCCTGTGTTCTAAAGCTTCTTA 59.929 40.000 0.00 0.00 0.00 2.10
1890 2778 6.147985 GGTCCTGTGTTCTAAAGCTTCTTAAG 59.852 42.308 0.00 0.00 0.00 1.85
1891 2779 6.147985 GTCCTGTGTTCTAAAGCTTCTTAAGG 59.852 42.308 0.00 0.00 0.00 2.69
1892 2780 5.106515 CCTGTGTTCTAAAGCTTCTTAAGGC 60.107 44.000 0.00 0.00 0.00 4.35
1893 2781 5.373222 TGTGTTCTAAAGCTTCTTAAGGCA 58.627 37.500 0.00 0.00 0.00 4.75
1895 2783 6.490040 TGTGTTCTAAAGCTTCTTAAGGCAAT 59.510 34.615 0.00 0.00 0.00 3.56
1896 2784 7.014230 TGTGTTCTAAAGCTTCTTAAGGCAATT 59.986 33.333 0.00 2.10 0.00 2.32
1897 2785 7.327032 GTGTTCTAAAGCTTCTTAAGGCAATTG 59.673 37.037 0.00 0.00 0.00 2.32
1898 2786 6.515272 TCTAAAGCTTCTTAAGGCAATTGG 57.485 37.500 7.72 1.93 0.00 3.16
1899 2787 6.010219 TCTAAAGCTTCTTAAGGCAATTGGT 58.990 36.000 7.72 0.00 0.00 3.67
1900 2788 5.551305 AAAGCTTCTTAAGGCAATTGGTT 57.449 34.783 7.72 0.00 0.00 3.67
1901 2789 5.551305 AAGCTTCTTAAGGCAATTGGTTT 57.449 34.783 7.72 0.00 0.00 3.27
1902 2790 5.551305 AGCTTCTTAAGGCAATTGGTTTT 57.449 34.783 7.72 0.00 0.00 2.43
1903 2791 5.928976 AGCTTCTTAAGGCAATTGGTTTTT 58.071 33.333 7.72 0.00 0.00 1.94
1924 2812 6.716934 TTTTTAAATCCTTACTGCACCACA 57.283 33.333 0.00 0.00 0.00 4.17
1925 2813 6.716934 TTTTAAATCCTTACTGCACCACAA 57.283 33.333 0.00 0.00 0.00 3.33
1926 2814 6.716934 TTTAAATCCTTACTGCACCACAAA 57.283 33.333 0.00 0.00 0.00 2.83
1927 2815 4.853924 AAATCCTTACTGCACCACAAAG 57.146 40.909 0.00 0.00 0.00 2.77
1928 2816 3.788227 ATCCTTACTGCACCACAAAGA 57.212 42.857 0.00 0.00 0.00 2.52
1929 2817 3.788227 TCCTTACTGCACCACAAAGAT 57.212 42.857 0.00 0.00 0.00 2.40
1930 2818 4.098914 TCCTTACTGCACCACAAAGATT 57.901 40.909 0.00 0.00 0.00 2.40
1931 2819 4.469657 TCCTTACTGCACCACAAAGATTT 58.530 39.130 0.00 0.00 0.00 2.17
1932 2820 4.892934 TCCTTACTGCACCACAAAGATTTT 59.107 37.500 0.00 0.00 0.00 1.82
1933 2821 4.984161 CCTTACTGCACCACAAAGATTTTG 59.016 41.667 0.28 0.28 0.00 2.44
1934 2822 2.825205 ACTGCACCACAAAGATTTTGC 58.175 42.857 1.68 0.00 0.00 3.68
1935 2823 2.431782 ACTGCACCACAAAGATTTTGCT 59.568 40.909 1.68 0.00 0.00 3.91
1936 2824 3.118665 ACTGCACCACAAAGATTTTGCTT 60.119 39.130 1.68 0.00 0.00 3.91
1937 2825 3.196463 TGCACCACAAAGATTTTGCTTG 58.804 40.909 1.68 0.00 0.00 4.01
1938 2826 2.545106 GCACCACAAAGATTTTGCTTGG 59.455 45.455 8.71 8.71 0.00 3.61
1939 2827 2.545106 CACCACAAAGATTTTGCTTGGC 59.455 45.455 9.72 0.00 0.00 4.52
1940 2828 1.794116 CCACAAAGATTTTGCTTGGCG 59.206 47.619 1.68 0.00 0.00 5.69
1941 2829 1.192980 CACAAAGATTTTGCTTGGCGC 59.807 47.619 0.00 0.00 39.77 6.53
1963 2851 5.324739 CAAGATTGCAAGCTTTGTTTCAG 57.675 39.130 26.46 10.42 31.24 3.02
1964 2852 4.660789 AGATTGCAAGCTTTGTTTCAGT 57.339 36.364 12.34 0.00 0.00 3.41
1965 2853 4.365723 AGATTGCAAGCTTTGTTTCAGTG 58.634 39.130 12.34 0.00 0.00 3.66
1966 2854 3.591196 TTGCAAGCTTTGTTTCAGTGT 57.409 38.095 0.00 0.00 0.00 3.55
1967 2855 3.591196 TGCAAGCTTTGTTTCAGTGTT 57.409 38.095 0.00 0.00 0.00 3.32
1968 2856 3.252400 TGCAAGCTTTGTTTCAGTGTTG 58.748 40.909 0.00 0.00 0.00 3.33
1969 2857 3.253230 GCAAGCTTTGTTTCAGTGTTGT 58.747 40.909 0.00 0.00 0.00 3.32
1970 2858 3.679502 GCAAGCTTTGTTTCAGTGTTGTT 59.320 39.130 0.00 0.00 0.00 2.83
1971 2859 4.434593 GCAAGCTTTGTTTCAGTGTTGTTG 60.435 41.667 0.00 0.00 0.00 3.33
1972 2860 3.253230 AGCTTTGTTTCAGTGTTGTTGC 58.747 40.909 0.00 0.00 0.00 4.17
1973 2861 2.348362 GCTTTGTTTCAGTGTTGTTGCC 59.652 45.455 0.00 0.00 0.00 4.52
2043 3270 2.337583 GTCACTGCTAACGCTTGATCA 58.662 47.619 0.00 0.00 36.97 2.92
2225 3469 3.118261 TGCTTGTTCCACTTCTTCTGAGT 60.118 43.478 0.00 0.00 0.00 3.41
2300 3544 5.204409 TGAAAGACATTCATGCTTTGCTT 57.796 34.783 11.51 0.00 43.08 3.91
2382 3630 3.665190 GTTCAGTTCTAGGGACAACTGG 58.335 50.000 17.39 4.59 46.46 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 3.107601 TCTGAGCTACATGTAGGCCTTT 58.892 45.455 29.45 10.11 33.87 3.11
81 82 2.022754 GCCAAGCCATTCAGCTGATCT 61.023 52.381 19.04 9.64 44.11 2.75
82 83 0.384669 GCCAAGCCATTCAGCTGATC 59.615 55.000 19.04 7.42 44.11 2.92
83 84 0.033405 AGCCAAGCCATTCAGCTGAT 60.033 50.000 19.04 4.99 44.11 2.90
84 85 0.251474 AAGCCAAGCCATTCAGCTGA 60.251 50.000 13.74 13.74 44.11 4.26
85 86 1.466856 TAAGCCAAGCCATTCAGCTG 58.533 50.000 7.63 7.63 44.11 4.24
87 88 2.029110 TGTTTAAGCCAAGCCATTCAGC 60.029 45.455 0.00 0.00 0.00 4.26
88 89 3.940209 TGTTTAAGCCAAGCCATTCAG 57.060 42.857 0.00 0.00 0.00 3.02
89 90 4.679373 TTTGTTTAAGCCAAGCCATTCA 57.321 36.364 0.00 0.00 0.00 2.57
90 91 5.163963 CGAATTTGTTTAAGCCAAGCCATTC 60.164 40.000 0.00 0.00 0.00 2.67
91 92 4.690280 CGAATTTGTTTAAGCCAAGCCATT 59.310 37.500 0.00 0.00 0.00 3.16
92 93 4.244862 CGAATTTGTTTAAGCCAAGCCAT 58.755 39.130 0.00 0.00 0.00 4.40
93 94 3.648009 CGAATTTGTTTAAGCCAAGCCA 58.352 40.909 0.00 0.00 0.00 4.75
94 95 2.411748 GCGAATTTGTTTAAGCCAAGCC 59.588 45.455 0.00 0.00 0.00 4.35
95 96 3.056304 TGCGAATTTGTTTAAGCCAAGC 58.944 40.909 0.00 0.00 0.00 4.01
96 97 4.148696 CAGTGCGAATTTGTTTAAGCCAAG 59.851 41.667 0.00 0.00 0.00 3.61
97 98 4.047822 CAGTGCGAATTTGTTTAAGCCAA 58.952 39.130 0.00 0.00 0.00 4.52
98 99 3.316588 TCAGTGCGAATTTGTTTAAGCCA 59.683 39.130 0.00 0.00 0.00 4.75
99 100 3.896122 TCAGTGCGAATTTGTTTAAGCC 58.104 40.909 0.00 0.00 0.00 4.35
100 101 5.153513 TCATCAGTGCGAATTTGTTTAAGC 58.846 37.500 0.00 0.00 0.00 3.09
101 102 7.201376 CCATTCATCAGTGCGAATTTGTTTAAG 60.201 37.037 5.22 0.00 29.38 1.85
102 103 6.585702 CCATTCATCAGTGCGAATTTGTTTAA 59.414 34.615 5.22 0.00 29.38 1.52
105 106 4.487948 CCATTCATCAGTGCGAATTTGTT 58.512 39.130 5.22 0.00 29.38 2.83
116 117 2.097825 GAAGCCAAGCCATTCATCAGT 58.902 47.619 0.00 0.00 0.00 3.41
119 120 3.932459 CGAAGCCAAGCCATTCATC 57.068 52.632 0.00 0.00 0.00 2.92
139 140 7.503566 AGAAAAGAAAACCAACATCTGATCTGA 59.496 33.333 4.63 4.63 0.00 3.27
140 141 7.655490 AGAAAAGAAAACCAACATCTGATCTG 58.345 34.615 0.00 0.00 0.00 2.90
141 142 7.830099 AGAAAAGAAAACCAACATCTGATCT 57.170 32.000 0.00 0.00 0.00 2.75
142 143 7.383300 CCAAGAAAAGAAAACCAACATCTGATC 59.617 37.037 0.00 0.00 0.00 2.92
143 144 7.069826 TCCAAGAAAAGAAAACCAACATCTGAT 59.930 33.333 0.00 0.00 0.00 2.90
159 160 1.207593 CCACGCGCTCCAAGAAAAG 59.792 57.895 5.73 0.00 0.00 2.27
174 175 2.617274 GCCCAACTTGTCGCTCCAC 61.617 63.158 0.00 0.00 0.00 4.02
180 181 0.593128 CCTCAAAGCCCAACTTGTCG 59.407 55.000 0.00 0.00 39.09 4.35
195 196 0.178967 TGTGAGCAAAATGGGCCTCA 60.179 50.000 4.53 0.00 0.00 3.86
204 205 3.513515 AGAAACCCAACTTGTGAGCAAAA 59.486 39.130 0.00 0.00 33.73 2.44
205 206 3.096092 AGAAACCCAACTTGTGAGCAAA 58.904 40.909 0.00 0.00 33.73 3.68
221 222 1.618640 GCGACGCACCAGAGAGAAAC 61.619 60.000 16.42 0.00 0.00 2.78
222 223 1.372997 GCGACGCACCAGAGAGAAA 60.373 57.895 16.42 0.00 0.00 2.52
223 224 2.258591 GCGACGCACCAGAGAGAA 59.741 61.111 16.42 0.00 0.00 2.87
224 225 2.673341 AGCGACGCACCAGAGAGA 60.673 61.111 23.70 0.00 0.00 3.10
225 226 2.505777 CAGCGACGCACCAGAGAG 60.506 66.667 23.70 0.00 0.00 3.20
226 227 4.724602 GCAGCGACGCACCAGAGA 62.725 66.667 23.70 0.00 0.00 3.10
228 229 4.600576 TTGCAGCGACGCACCAGA 62.601 61.111 23.70 6.57 42.87 3.86
229 230 3.584250 CTTTGCAGCGACGCACCAG 62.584 63.158 23.70 9.78 42.87 4.00
230 231 3.648982 CTTTGCAGCGACGCACCA 61.649 61.111 23.70 15.17 42.87 4.17
252 253 1.331214 CCAACTTGTGATTGGCAGGT 58.669 50.000 0.00 0.00 40.25 4.00
255 256 0.758310 TGCCCAACTTGTGATTGGCA 60.758 50.000 4.97 4.97 44.57 4.92
265 266 1.280421 GGTGAGAGAGATGCCCAACTT 59.720 52.381 0.00 0.00 0.00 2.66
267 268 0.615331 TGGTGAGAGAGATGCCCAAC 59.385 55.000 0.00 0.00 0.00 3.77
268 269 1.003580 GTTGGTGAGAGAGATGCCCAA 59.996 52.381 0.00 0.00 0.00 4.12
269 270 0.615331 GTTGGTGAGAGAGATGCCCA 59.385 55.000 0.00 0.00 0.00 5.36
271 272 0.460987 CGGTTGGTGAGAGAGATGCC 60.461 60.000 0.00 0.00 0.00 4.40
1146 1790 1.276421 ACAGACGGATCCTTGGACAAG 59.724 52.381 10.75 5.09 38.14 3.16
1263 1908 1.066573 CACTCCAGGCTGTAAGTGAGG 60.067 57.143 29.34 12.51 41.26 3.86
1289 1934 0.674534 GACATAGTAGCGGGGTCTGG 59.325 60.000 0.00 0.00 0.00 3.86
1308 1953 7.151976 ACCCATTTTCCTTAAGAAATTTCACG 58.848 34.615 19.99 5.25 43.93 4.35
1431 2202 0.718343 CAGCGTAGTCTTCAGCAAGC 59.282 55.000 0.00 0.00 0.00 4.01
1546 2318 3.820557 ACCAGCTTACAATGGCGAATAT 58.179 40.909 0.00 0.00 40.45 1.28
1591 2363 6.434028 TGGCAGAAAAACAGCATCTAGTTAAT 59.566 34.615 0.00 0.00 32.56 1.40
1626 2398 9.117183 CCAAATCATCAGTTCAATCAGATTCTA 57.883 33.333 0.00 0.00 0.00 2.10
1720 2607 5.066375 GTGTGCTAAATAACATGGCATCAGA 59.934 40.000 0.00 0.00 35.37 3.27
1818 2706 1.045407 AATAGAGTGCCGGGCGATAA 58.955 50.000 15.40 0.00 0.00 1.75
1819 2707 1.913778 TAATAGAGTGCCGGGCGATA 58.086 50.000 15.40 4.70 0.00 2.92
1820 2708 1.267121 ATAATAGAGTGCCGGGCGAT 58.733 50.000 15.40 4.82 0.00 4.58
1821 2709 1.542915 GTATAATAGAGTGCCGGGCGA 59.457 52.381 15.40 0.31 0.00 5.54
1822 2710 1.271379 TGTATAATAGAGTGCCGGGCG 59.729 52.381 15.40 0.00 0.00 6.13
1823 2711 2.299297 AGTGTATAATAGAGTGCCGGGC 59.701 50.000 13.32 13.32 0.00 6.13
1824 2712 3.306088 CCAGTGTATAATAGAGTGCCGGG 60.306 52.174 2.18 0.00 0.00 5.73
1825 2713 3.861131 GCCAGTGTATAATAGAGTGCCGG 60.861 52.174 0.00 0.00 0.00 6.13
1826 2714 3.318017 GCCAGTGTATAATAGAGTGCCG 58.682 50.000 0.00 0.00 0.00 5.69
1827 2715 3.665190 GGCCAGTGTATAATAGAGTGCC 58.335 50.000 0.00 0.00 0.00 5.01
1828 2716 3.005472 TCGGCCAGTGTATAATAGAGTGC 59.995 47.826 2.24 0.00 0.00 4.40
1831 2719 3.572682 TGGTCGGCCAGTGTATAATAGAG 59.427 47.826 3.51 0.00 40.46 2.43
1834 2722 3.707611 AGTTGGTCGGCCAGTGTATAATA 59.292 43.478 9.61 0.00 46.91 0.98
1837 2725 1.206132 CAGTTGGTCGGCCAGTGTATA 59.794 52.381 9.61 0.00 46.91 1.47
1839 2727 1.369692 CAGTTGGTCGGCCAGTGTA 59.630 57.895 9.61 0.00 46.91 2.90
1840 2728 2.111043 CAGTTGGTCGGCCAGTGT 59.889 61.111 9.61 0.00 46.91 3.55
1841 2729 2.669569 CCAGTTGGTCGGCCAGTG 60.670 66.667 9.61 11.34 46.91 3.66
1843 2731 0.609131 AATTCCAGTTGGTCGGCCAG 60.609 55.000 9.61 0.00 46.91 4.85
1844 2732 0.178975 AAATTCCAGTTGGTCGGCCA 60.179 50.000 3.51 3.51 44.38 5.36
1846 2734 1.336795 CCAAAATTCCAGTTGGTCGGC 60.337 52.381 0.00 0.00 39.61 5.54
1852 2740 3.384467 ACACAGGACCAAAATTCCAGTTG 59.616 43.478 0.00 0.00 35.33 3.16
1853 2741 3.642141 ACACAGGACCAAAATTCCAGTT 58.358 40.909 0.00 0.00 35.33 3.16
1854 2742 3.312736 ACACAGGACCAAAATTCCAGT 57.687 42.857 0.00 0.00 35.33 4.00
1855 2743 3.891366 AGAACACAGGACCAAAATTCCAG 59.109 43.478 0.00 0.00 35.33 3.86
1856 2744 3.909732 AGAACACAGGACCAAAATTCCA 58.090 40.909 0.00 0.00 35.33 3.53
1858 2746 5.920840 GCTTTAGAACACAGGACCAAAATTC 59.079 40.000 0.00 0.00 0.00 2.17
1859 2747 5.598417 AGCTTTAGAACACAGGACCAAAATT 59.402 36.000 0.00 0.00 0.00 1.82
1862 2750 4.164843 AGCTTTAGAACACAGGACCAAA 57.835 40.909 0.00 0.00 0.00 3.28
1863 2751 3.857157 AGCTTTAGAACACAGGACCAA 57.143 42.857 0.00 0.00 0.00 3.67
1864 2752 3.391296 AGAAGCTTTAGAACACAGGACCA 59.609 43.478 0.00 0.00 0.00 4.02
1865 2753 4.009370 AGAAGCTTTAGAACACAGGACC 57.991 45.455 0.00 0.00 0.00 4.46
1866 2754 6.147985 CCTTAAGAAGCTTTAGAACACAGGAC 59.852 42.308 3.36 0.00 0.00 3.85
1868 2756 5.106515 GCCTTAAGAAGCTTTAGAACACAGG 60.107 44.000 3.36 0.07 0.00 4.00
1869 2757 5.470098 TGCCTTAAGAAGCTTTAGAACACAG 59.530 40.000 3.36 0.00 0.00 3.66
1871 2759 5.941948 TGCCTTAAGAAGCTTTAGAACAC 57.058 39.130 3.36 0.00 0.00 3.32
1872 2760 7.370383 CAATTGCCTTAAGAAGCTTTAGAACA 58.630 34.615 3.36 0.00 0.00 3.18
1873 2761 6.808704 CCAATTGCCTTAAGAAGCTTTAGAAC 59.191 38.462 3.36 0.00 0.00 3.01
1874 2762 6.493458 ACCAATTGCCTTAAGAAGCTTTAGAA 59.507 34.615 3.36 0.00 0.00 2.10
1875 2763 6.010219 ACCAATTGCCTTAAGAAGCTTTAGA 58.990 36.000 3.36 0.00 0.00 2.10
1876 2764 6.272822 ACCAATTGCCTTAAGAAGCTTTAG 57.727 37.500 3.36 0.00 0.00 1.85
1879 2767 5.551305 AAACCAATTGCCTTAAGAAGCTT 57.449 34.783 3.36 0.00 0.00 3.74
1880 2768 5.551305 AAAACCAATTGCCTTAAGAAGCT 57.449 34.783 3.36 0.00 0.00 3.74
1901 2789 6.716934 TGTGGTGCAGTAAGGATTTAAAAA 57.283 33.333 0.00 0.00 0.00 1.94
1902 2790 6.716934 TTGTGGTGCAGTAAGGATTTAAAA 57.283 33.333 0.00 0.00 0.00 1.52
1903 2791 6.547880 TCTTTGTGGTGCAGTAAGGATTTAAA 59.452 34.615 0.00 0.00 0.00 1.52
1904 2792 6.065374 TCTTTGTGGTGCAGTAAGGATTTAA 58.935 36.000 0.00 0.00 0.00 1.52
1905 2793 5.626142 TCTTTGTGGTGCAGTAAGGATTTA 58.374 37.500 0.00 0.00 0.00 1.40
1906 2794 4.469657 TCTTTGTGGTGCAGTAAGGATTT 58.530 39.130 0.00 0.00 0.00 2.17
1907 2795 4.098914 TCTTTGTGGTGCAGTAAGGATT 57.901 40.909 0.00 0.00 0.00 3.01
1908 2796 3.788227 TCTTTGTGGTGCAGTAAGGAT 57.212 42.857 0.00 0.00 0.00 3.24
1909 2797 3.788227 ATCTTTGTGGTGCAGTAAGGA 57.212 42.857 0.00 0.00 0.00 3.36
1910 2798 4.853924 AAATCTTTGTGGTGCAGTAAGG 57.146 40.909 0.00 0.00 0.00 2.69
1911 2799 4.445385 GCAAAATCTTTGTGGTGCAGTAAG 59.555 41.667 0.00 0.00 32.29 2.34
1912 2800 4.099266 AGCAAAATCTTTGTGGTGCAGTAA 59.901 37.500 0.00 0.00 34.44 2.24
1913 2801 3.636300 AGCAAAATCTTTGTGGTGCAGTA 59.364 39.130 0.00 0.00 34.44 2.74
1914 2802 2.431782 AGCAAAATCTTTGTGGTGCAGT 59.568 40.909 0.00 0.00 34.44 4.40
1915 2803 3.102052 AGCAAAATCTTTGTGGTGCAG 57.898 42.857 0.00 0.00 34.44 4.41
1916 2804 3.196463 CAAGCAAAATCTTTGTGGTGCA 58.804 40.909 0.00 0.00 34.44 4.57
1917 2805 2.545106 CCAAGCAAAATCTTTGTGGTGC 59.455 45.455 1.45 0.00 0.00 5.01
1918 2806 2.545106 GCCAAGCAAAATCTTTGTGGTG 59.455 45.455 9.31 2.97 0.00 4.17
1919 2807 2.802774 CGCCAAGCAAAATCTTTGTGGT 60.803 45.455 9.31 0.00 0.00 4.16
1920 2808 1.794116 CGCCAAGCAAAATCTTTGTGG 59.206 47.619 1.45 3.44 0.00 4.17
1941 2829 4.807304 ACTGAAACAAAGCTTGCAATCTTG 59.193 37.500 15.79 13.40 0.00 3.02
1942 2830 4.807304 CACTGAAACAAAGCTTGCAATCTT 59.193 37.500 9.70 9.70 0.00 2.40
1943 2831 4.142093 ACACTGAAACAAAGCTTGCAATCT 60.142 37.500 0.00 0.00 0.00 2.40
1944 2832 4.114794 ACACTGAAACAAAGCTTGCAATC 58.885 39.130 0.00 0.00 0.00 2.67
1945 2833 4.127566 ACACTGAAACAAAGCTTGCAAT 57.872 36.364 0.00 0.00 0.00 3.56
1946 2834 3.591196 ACACTGAAACAAAGCTTGCAA 57.409 38.095 0.00 0.00 0.00 4.08
1947 2835 3.252400 CAACACTGAAACAAAGCTTGCA 58.748 40.909 0.00 0.00 0.00 4.08
1948 2836 3.253230 ACAACACTGAAACAAAGCTTGC 58.747 40.909 0.00 0.00 0.00 4.01
1949 2837 4.434593 GCAACAACACTGAAACAAAGCTTG 60.435 41.667 0.00 0.00 0.00 4.01
1950 2838 3.679502 GCAACAACACTGAAACAAAGCTT 59.320 39.130 0.00 0.00 0.00 3.74
1951 2839 3.253230 GCAACAACACTGAAACAAAGCT 58.747 40.909 0.00 0.00 0.00 3.74
1952 2840 2.348362 GGCAACAACACTGAAACAAAGC 59.652 45.455 0.00 0.00 0.00 3.51
1953 2841 3.848726 AGGCAACAACACTGAAACAAAG 58.151 40.909 0.00 0.00 41.41 2.77
1954 2842 3.951775 AGGCAACAACACTGAAACAAA 57.048 38.095 0.00 0.00 41.41 2.83
1955 2843 4.461081 AGTTAGGCAACAACACTGAAACAA 59.539 37.500 0.00 0.00 37.10 2.83
1956 2844 4.013728 AGTTAGGCAACAACACTGAAACA 58.986 39.130 0.00 0.00 37.10 2.83
1957 2845 4.351192 CAGTTAGGCAACAACACTGAAAC 58.649 43.478 0.00 0.00 40.64 2.78
1958 2846 3.380004 CCAGTTAGGCAACAACACTGAAA 59.620 43.478 0.00 0.00 40.64 2.69
1959 2847 2.948979 CCAGTTAGGCAACAACACTGAA 59.051 45.455 0.00 0.00 40.64 3.02
1960 2848 2.171659 TCCAGTTAGGCAACAACACTGA 59.828 45.455 0.00 0.00 40.64 3.41
1961 2849 2.571212 TCCAGTTAGGCAACAACACTG 58.429 47.619 0.00 0.00 38.93 3.66
1962 2850 3.149196 CATCCAGTTAGGCAACAACACT 58.851 45.455 0.00 0.00 37.10 3.55
1963 2851 2.884639 ACATCCAGTTAGGCAACAACAC 59.115 45.455 0.00 0.00 37.10 3.32
1964 2852 3.222173 ACATCCAGTTAGGCAACAACA 57.778 42.857 0.00 0.00 37.10 3.33
1965 2853 3.305335 CCAACATCCAGTTAGGCAACAAC 60.305 47.826 0.00 0.00 38.74 3.32
1966 2854 2.890311 CCAACATCCAGTTAGGCAACAA 59.110 45.455 0.00 0.00 38.74 2.83
1967 2855 2.158534 ACCAACATCCAGTTAGGCAACA 60.159 45.455 0.00 0.00 38.74 3.33
1968 2856 2.488153 GACCAACATCCAGTTAGGCAAC 59.512 50.000 0.00 0.00 38.74 4.17
1969 2857 2.375174 AGACCAACATCCAGTTAGGCAA 59.625 45.455 0.00 0.00 38.74 4.52
1970 2858 1.985159 AGACCAACATCCAGTTAGGCA 59.015 47.619 0.00 0.00 38.74 4.75
1971 2859 2.237392 AGAGACCAACATCCAGTTAGGC 59.763 50.000 0.00 0.00 38.74 3.93
1972 2860 3.369892 CCAGAGACCAACATCCAGTTAGG 60.370 52.174 0.00 0.00 38.74 2.69
1973 2861 3.261897 ACCAGAGACCAACATCCAGTTAG 59.738 47.826 0.00 0.00 38.74 2.34
2070 3297 7.703298 AATGAAATTTTATGATGCATGGACG 57.297 32.000 2.46 0.00 26.74 4.79
2329 3576 0.622665 AGGCCACTCAGAAATCAGGG 59.377 55.000 5.01 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.