Multiple sequence alignment - TraesCS6D01G052200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G052200 chr6D 100.000 4771 0 0 1 4771 24846483 24841713 0.000000e+00 8811.0
1 TraesCS6D01G052200 chr6D 70.390 564 143 20 1991 2542 75885872 75885321 1.410000e-15 95.3
2 TraesCS6D01G052200 chr6A 91.010 3248 181 50 848 4088 23374462 23371319 0.000000e+00 4277.0
3 TraesCS6D01G052200 chr6A 90.374 696 33 5 4096 4759 23371213 23370520 0.000000e+00 883.0
4 TraesCS6D01G052200 chr6A 86.993 715 48 16 167 852 23375391 23374693 0.000000e+00 763.0
5 TraesCS6D01G052200 chr6A 78.205 156 26 6 2391 2542 91892824 91892673 5.080000e-15 93.5
6 TraesCS6D01G052200 chr6B 90.246 2727 177 28 1413 4100 40441441 40444117 0.000000e+00 3480.0
7 TraesCS6D01G052200 chr6B 90.775 542 43 5 847 1383 40440912 40441451 0.000000e+00 717.0
8 TraesCS6D01G052200 chr6B 88.359 524 48 10 4244 4759 40445000 40445518 6.780000e-173 617.0
9 TraesCS6D01G052200 chr6B 88.013 317 26 5 480 784 40440308 40440624 9.760000e-97 364.0
10 TraesCS6D01G052200 chr6B 70.385 753 183 35 1810 2542 149481094 149480362 8.390000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G052200 chr6D 24841713 24846483 4770 True 8811.000000 8811 100.00000 1 4771 1 chr6D.!!$R1 4770
1 TraesCS6D01G052200 chr6A 23370520 23375391 4871 True 1974.333333 4277 89.45900 167 4759 3 chr6A.!!$R2 4592
2 TraesCS6D01G052200 chr6B 40440308 40445518 5210 False 1294.500000 3480 89.34825 480 4759 4 chr6B.!!$F1 4279

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 473 0.036577 CTCCAGACTCCAAGTGCCTG 60.037 60.0 0.00 0.0 0.00 4.85 F
445 474 0.471780 TCCAGACTCCAAGTGCCTGA 60.472 55.0 0.00 0.0 0.00 3.86 F
446 475 0.036577 CCAGACTCCAAGTGCCTGAG 60.037 60.0 0.00 0.0 0.00 3.35 F
1654 1979 0.476338 TGGCACCACTAAGGCTGAAA 59.524 50.0 0.00 0.0 43.14 2.69 F
2711 3060 0.103208 CGCCGCCTCTATCAGAGTTT 59.897 55.0 2.71 0.0 40.72 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1865 2214 1.081840 GTTTTCTGGCAGAGCGCAC 60.082 57.895 17.91 2.25 45.17 5.34 R
2080 2429 1.180456 TGGCAAGCCACCACATCTTG 61.180 55.000 10.24 0.00 41.89 3.02 R
2359 2708 1.858458 CCCGCACGTGTGATATACTTG 59.142 52.381 29.80 10.42 0.00 3.16 R
3272 3621 0.402504 TGCAACCCCGTAAATGGAGT 59.597 50.000 0.00 0.00 0.00 3.85 R
4429 5570 0.173481 CGATGGAAGAAGCCGAGTGA 59.827 55.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.274095 GGAGGATTTCCACCTTCTCTG 57.726 52.381 5.88 0.00 46.01 3.35
22 23 2.092699 GGAGGATTTCCACCTTCTCTGG 60.093 54.545 5.88 0.00 46.01 3.86
23 24 1.283321 AGGATTTCCACCTTCTCTGGC 59.717 52.381 0.00 0.00 38.89 4.85
24 25 1.683319 GGATTTCCACCTTCTCTGGCC 60.683 57.143 0.00 0.00 35.64 5.36
25 26 1.283321 GATTTCCACCTTCTCTGGCCT 59.717 52.381 3.32 0.00 0.00 5.19
26 27 1.149101 TTTCCACCTTCTCTGGCCTT 58.851 50.000 3.32 0.00 0.00 4.35
27 28 1.149101 TTCCACCTTCTCTGGCCTTT 58.851 50.000 3.32 0.00 0.00 3.11
28 29 2.038863 TCCACCTTCTCTGGCCTTTA 57.961 50.000 3.32 0.00 0.00 1.85
29 30 2.562296 TCCACCTTCTCTGGCCTTTAT 58.438 47.619 3.32 0.00 0.00 1.40
30 31 2.505819 TCCACCTTCTCTGGCCTTTATC 59.494 50.000 3.32 0.00 0.00 1.75
31 32 2.555199 CACCTTCTCTGGCCTTTATCG 58.445 52.381 3.32 0.00 0.00 2.92
32 33 1.486726 ACCTTCTCTGGCCTTTATCGG 59.513 52.381 3.32 0.26 0.00 4.18
39 40 2.551270 GCCTTTATCGGCGCATCG 59.449 61.111 10.83 4.34 40.79 3.84
40 41 2.244651 GCCTTTATCGGCGCATCGT 61.245 57.895 10.83 0.00 40.79 3.73
41 42 1.772063 GCCTTTATCGGCGCATCGTT 61.772 55.000 10.83 1.95 40.79 3.85
42 43 0.042188 CCTTTATCGGCGCATCGTTG 60.042 55.000 10.83 0.00 0.00 4.10
43 44 0.650512 CTTTATCGGCGCATCGTTGT 59.349 50.000 10.83 0.00 0.00 3.32
44 45 1.855978 CTTTATCGGCGCATCGTTGTA 59.144 47.619 10.83 0.00 0.00 2.41
45 46 1.483316 TTATCGGCGCATCGTTGTAG 58.517 50.000 10.83 0.00 0.00 2.74
46 47 0.937699 TATCGGCGCATCGTTGTAGC 60.938 55.000 10.83 7.30 0.00 3.58
47 48 3.925238 CGGCGCATCGTTGTAGCC 61.925 66.667 10.83 18.75 41.92 3.93
48 49 3.925238 GGCGCATCGTTGTAGCCG 61.925 66.667 10.83 3.84 38.39 5.52
49 50 3.186047 GCGCATCGTTGTAGCCGT 61.186 61.111 0.30 0.00 0.00 5.68
50 51 2.695055 CGCATCGTTGTAGCCGTG 59.305 61.111 0.00 0.00 0.00 4.94
51 52 2.092291 CGCATCGTTGTAGCCGTGT 61.092 57.895 0.00 0.00 0.00 4.49
52 53 0.799152 CGCATCGTTGTAGCCGTGTA 60.799 55.000 0.00 0.00 0.00 2.90
53 54 0.921347 GCATCGTTGTAGCCGTGTAG 59.079 55.000 0.00 0.00 0.00 2.74
54 55 1.556564 CATCGTTGTAGCCGTGTAGG 58.443 55.000 0.00 0.00 44.97 3.18
55 56 1.135199 CATCGTTGTAGCCGTGTAGGT 60.135 52.381 0.00 0.00 43.70 3.08
56 57 0.961019 TCGTTGTAGCCGTGTAGGTT 59.039 50.000 0.00 0.00 43.70 3.50
57 58 1.068333 TCGTTGTAGCCGTGTAGGTTC 60.068 52.381 0.00 0.00 43.70 3.62
58 59 1.068055 CGTTGTAGCCGTGTAGGTTCT 60.068 52.381 0.00 0.00 43.70 3.01
59 60 2.608752 CGTTGTAGCCGTGTAGGTTCTT 60.609 50.000 0.00 0.00 43.70 2.52
60 61 3.366273 CGTTGTAGCCGTGTAGGTTCTTA 60.366 47.826 0.00 0.00 43.70 2.10
61 62 4.676196 CGTTGTAGCCGTGTAGGTTCTTAT 60.676 45.833 0.00 0.00 43.70 1.73
62 63 5.173664 GTTGTAGCCGTGTAGGTTCTTATT 58.826 41.667 0.00 0.00 43.70 1.40
63 64 4.751060 TGTAGCCGTGTAGGTTCTTATTG 58.249 43.478 0.00 0.00 43.70 1.90
64 65 4.463539 TGTAGCCGTGTAGGTTCTTATTGA 59.536 41.667 0.00 0.00 43.70 2.57
65 66 4.755266 AGCCGTGTAGGTTCTTATTGAT 57.245 40.909 0.00 0.00 43.70 2.57
66 67 5.099042 AGCCGTGTAGGTTCTTATTGATT 57.901 39.130 0.00 0.00 43.70 2.57
67 68 5.116882 AGCCGTGTAGGTTCTTATTGATTC 58.883 41.667 0.00 0.00 43.70 2.52
68 69 4.873827 GCCGTGTAGGTTCTTATTGATTCA 59.126 41.667 0.00 0.00 43.70 2.57
69 70 5.006746 GCCGTGTAGGTTCTTATTGATTCAG 59.993 44.000 0.00 0.00 43.70 3.02
70 71 6.338146 CCGTGTAGGTTCTTATTGATTCAGA 58.662 40.000 0.00 0.00 34.51 3.27
71 72 6.986817 CCGTGTAGGTTCTTATTGATTCAGAT 59.013 38.462 0.00 0.00 34.51 2.90
72 73 8.141909 CCGTGTAGGTTCTTATTGATTCAGATA 58.858 37.037 0.00 0.00 34.51 1.98
73 74 8.969267 CGTGTAGGTTCTTATTGATTCAGATAC 58.031 37.037 0.00 0.00 0.00 2.24
74 75 9.817809 GTGTAGGTTCTTATTGATTCAGATACA 57.182 33.333 0.00 0.00 0.00 2.29
75 76 9.817809 TGTAGGTTCTTATTGATTCAGATACAC 57.182 33.333 0.00 0.00 0.00 2.90
76 77 9.817809 GTAGGTTCTTATTGATTCAGATACACA 57.182 33.333 0.00 0.00 0.00 3.72
84 85 6.549912 TTGATTCAGATACACATATGCTGC 57.450 37.500 1.58 0.00 0.00 5.25
85 86 5.613329 TGATTCAGATACACATATGCTGCA 58.387 37.500 4.13 4.13 0.00 4.41
86 87 6.235664 TGATTCAGATACACATATGCTGCAT 58.764 36.000 20.18 20.18 0.00 3.96
87 88 6.370718 TGATTCAGATACACATATGCTGCATC 59.629 38.462 19.90 7.62 32.41 3.91
88 89 5.217978 TCAGATACACATATGCTGCATCA 57.782 39.130 19.90 6.34 0.00 3.07
89 90 5.235516 TCAGATACACATATGCTGCATCAG 58.764 41.667 19.90 14.80 34.12 2.90
113 114 2.358003 GCAGGCAGCGTCAGAACT 60.358 61.111 0.00 0.00 0.00 3.01
114 115 2.386660 GCAGGCAGCGTCAGAACTC 61.387 63.158 0.00 0.00 0.00 3.01
115 116 1.005748 CAGGCAGCGTCAGAACTCA 60.006 57.895 0.00 0.00 0.00 3.41
116 117 1.013005 CAGGCAGCGTCAGAACTCAG 61.013 60.000 0.00 0.00 0.00 3.35
117 118 1.181741 AGGCAGCGTCAGAACTCAGA 61.182 55.000 0.00 0.00 0.00 3.27
118 119 0.319900 GGCAGCGTCAGAACTCAGAA 60.320 55.000 0.00 0.00 0.00 3.02
119 120 0.787183 GCAGCGTCAGAACTCAGAAC 59.213 55.000 0.00 0.00 0.00 3.01
120 121 1.604185 GCAGCGTCAGAACTCAGAACT 60.604 52.381 0.00 0.00 0.00 3.01
121 122 2.351835 GCAGCGTCAGAACTCAGAACTA 60.352 50.000 0.00 0.00 0.00 2.24
122 123 3.857383 GCAGCGTCAGAACTCAGAACTAA 60.857 47.826 0.00 0.00 0.00 2.24
123 124 3.670991 CAGCGTCAGAACTCAGAACTAAC 59.329 47.826 0.00 0.00 0.00 2.34
124 125 3.570550 AGCGTCAGAACTCAGAACTAACT 59.429 43.478 0.00 0.00 0.00 2.24
125 126 3.670991 GCGTCAGAACTCAGAACTAACTG 59.329 47.826 0.00 0.00 39.02 3.16
126 127 4.793353 GCGTCAGAACTCAGAACTAACTGT 60.793 45.833 0.00 0.00 38.79 3.55
127 128 4.912766 CGTCAGAACTCAGAACTAACTGTC 59.087 45.833 0.00 0.00 38.79 3.51
128 129 5.505819 CGTCAGAACTCAGAACTAACTGTCA 60.506 44.000 0.00 0.00 38.79 3.58
129 130 6.273825 GTCAGAACTCAGAACTAACTGTCAA 58.726 40.000 0.00 0.00 38.79 3.18
130 131 6.419413 GTCAGAACTCAGAACTAACTGTCAAG 59.581 42.308 0.00 0.00 38.79 3.02
131 132 6.096987 TCAGAACTCAGAACTAACTGTCAAGT 59.903 38.462 0.00 0.00 38.79 3.16
133 134 7.278868 CAGAACTCAGAACTAACTGTCAAGTTT 59.721 37.037 9.14 0.17 44.47 2.66
134 135 7.824779 AGAACTCAGAACTAACTGTCAAGTTTT 59.175 33.333 9.14 2.74 44.47 2.43
135 136 9.095065 GAACTCAGAACTAACTGTCAAGTTTTA 57.905 33.333 9.14 0.61 44.47 1.52
136 137 8.421673 ACTCAGAACTAACTGTCAAGTTTTAC 57.578 34.615 9.14 0.00 44.47 2.01
137 138 8.258708 ACTCAGAACTAACTGTCAAGTTTTACT 58.741 33.333 9.14 1.78 44.47 2.24
138 139 9.099454 CTCAGAACTAACTGTCAAGTTTTACTT 57.901 33.333 9.14 0.00 44.47 2.24
139 140 9.444600 TCAGAACTAACTGTCAAGTTTTACTTT 57.555 29.630 9.14 0.00 44.47 2.66
142 143 8.683550 AACTAACTGTCAAGTTTTACTTTTGC 57.316 30.769 0.00 0.00 44.47 3.68
143 144 8.051901 ACTAACTGTCAAGTTTTACTTTTGCT 57.948 30.769 0.00 0.00 44.47 3.91
144 145 8.520351 ACTAACTGTCAAGTTTTACTTTTGCTT 58.480 29.630 0.00 0.00 44.47 3.91
145 146 7.581011 AACTGTCAAGTTTTACTTTTGCTTG 57.419 32.000 0.00 0.00 44.47 4.01
146 147 6.687604 ACTGTCAAGTTTTACTTTTGCTTGT 58.312 32.000 0.00 0.00 36.03 3.16
147 148 6.586082 ACTGTCAAGTTTTACTTTTGCTTGTG 59.414 34.615 0.00 0.00 36.03 3.33
148 149 6.451393 TGTCAAGTTTTACTTTTGCTTGTGT 58.549 32.000 0.00 0.00 36.03 3.72
149 150 6.926272 TGTCAAGTTTTACTTTTGCTTGTGTT 59.074 30.769 0.00 0.00 36.03 3.32
150 151 7.095857 TGTCAAGTTTTACTTTTGCTTGTGTTG 60.096 33.333 0.00 0.00 36.03 3.33
151 152 6.367422 TCAAGTTTTACTTTTGCTTGTGTTGG 59.633 34.615 0.00 0.00 36.03 3.77
152 153 5.789521 AGTTTTACTTTTGCTTGTGTTGGT 58.210 33.333 0.00 0.00 0.00 3.67
153 154 6.926313 AGTTTTACTTTTGCTTGTGTTGGTA 58.074 32.000 0.00 0.00 0.00 3.25
154 155 7.033185 AGTTTTACTTTTGCTTGTGTTGGTAG 58.967 34.615 0.00 0.00 0.00 3.18
155 156 5.508200 TTACTTTTGCTTGTGTTGGTAGG 57.492 39.130 0.00 0.00 0.00 3.18
156 157 2.100749 ACTTTTGCTTGTGTTGGTAGGC 59.899 45.455 0.00 0.00 0.00 3.93
157 158 2.065899 TTTGCTTGTGTTGGTAGGCT 57.934 45.000 0.00 0.00 0.00 4.58
158 159 2.940994 TTGCTTGTGTTGGTAGGCTA 57.059 45.000 0.00 0.00 0.00 3.93
159 160 2.940994 TGCTTGTGTTGGTAGGCTAA 57.059 45.000 0.00 0.00 0.00 3.09
160 161 3.216187 TGCTTGTGTTGGTAGGCTAAA 57.784 42.857 0.00 0.00 0.00 1.85
161 162 2.882137 TGCTTGTGTTGGTAGGCTAAAC 59.118 45.455 0.00 0.00 0.00 2.01
162 163 3.146847 GCTTGTGTTGGTAGGCTAAACT 58.853 45.455 9.75 0.00 0.00 2.66
163 164 3.058224 GCTTGTGTTGGTAGGCTAAACTG 60.058 47.826 9.75 1.40 0.00 3.16
164 165 2.500229 TGTGTTGGTAGGCTAAACTGC 58.500 47.619 9.75 4.74 0.00 4.40
165 166 2.105821 TGTGTTGGTAGGCTAAACTGCT 59.894 45.455 9.75 0.00 0.00 4.24
166 167 3.325425 TGTGTTGGTAGGCTAAACTGCTA 59.675 43.478 9.75 0.00 0.00 3.49
167 168 4.019681 TGTGTTGGTAGGCTAAACTGCTAT 60.020 41.667 9.75 0.00 0.00 2.97
168 169 4.941873 GTGTTGGTAGGCTAAACTGCTATT 59.058 41.667 9.75 0.00 0.00 1.73
169 170 4.941263 TGTTGGTAGGCTAAACTGCTATTG 59.059 41.667 9.75 0.00 0.00 1.90
170 171 4.837093 TGGTAGGCTAAACTGCTATTGT 57.163 40.909 0.00 0.00 0.00 2.71
171 172 5.174037 TGGTAGGCTAAACTGCTATTGTT 57.826 39.130 0.00 0.00 0.00 2.83
172 173 6.302535 TGGTAGGCTAAACTGCTATTGTTA 57.697 37.500 0.00 0.00 0.00 2.41
173 174 6.110707 TGGTAGGCTAAACTGCTATTGTTAC 58.889 40.000 0.00 0.00 0.00 2.50
180 181 8.244113 GGCTAAACTGCTATTGTTACAGAAATT 58.756 33.333 0.00 0.00 35.38 1.82
212 213 7.177216 TGCTTTTATCTTTCTCCATTGTCATGT 59.823 33.333 0.00 0.00 0.00 3.21
235 237 6.011628 TGTCTTAGGATTGGGGAGAAAAGATT 60.012 38.462 0.00 0.00 0.00 2.40
239 241 3.131755 GGATTGGGGAGAAAAGATTGCAG 59.868 47.826 0.00 0.00 0.00 4.41
246 248 4.566488 GGGAGAAAAGATTGCAGGAAGAGA 60.566 45.833 0.00 0.00 0.00 3.10
248 250 4.331108 AGAAAAGATTGCAGGAAGAGACC 58.669 43.478 0.00 0.00 0.00 3.85
249 251 3.795688 AAAGATTGCAGGAAGAGACCA 57.204 42.857 0.00 0.00 0.00 4.02
266 270 0.942410 CCACAAACATGTGCTGCTGC 60.942 55.000 8.89 8.89 38.40 5.25
274 278 1.176619 ATGTGCTGCTGCTTGCTCAA 61.177 50.000 17.00 8.06 43.37 3.02
278 282 1.200716 TGCTGCTGCTTGCTCAATAAC 59.799 47.619 17.00 0.00 43.37 1.89
279 283 1.471684 GCTGCTGCTTGCTCAATAACT 59.528 47.619 8.53 0.00 43.37 2.24
283 287 2.485426 GCTGCTTGCTCAATAACTGACA 59.515 45.455 0.00 0.00 38.95 3.58
286 290 3.503363 TGCTTGCTCAATAACTGACAAGG 59.497 43.478 13.74 0.00 40.18 3.61
299 303 3.821033 ACTGACAAGGGTAATCTTTGTGC 59.179 43.478 0.00 0.00 0.00 4.57
342 347 2.296190 GTGTCAATTTCAGACCCCAACC 59.704 50.000 0.00 0.00 35.15 3.77
352 357 1.856920 AGACCCCAACCCAAGAAGAAA 59.143 47.619 0.00 0.00 0.00 2.52
364 369 8.413229 CAACCCAAGAAGAAACAGAAATAAAGA 58.587 33.333 0.00 0.00 0.00 2.52
389 414 5.312079 AGAAAACAGAGAAATGGAGTGGAG 58.688 41.667 0.00 0.00 0.00 3.86
411 440 1.126488 TCTCTGCTATGCCTCCTTGG 58.874 55.000 0.00 0.00 39.35 3.61
413 442 1.211457 CTCTGCTATGCCTCCTTGGTT 59.789 52.381 0.00 0.00 38.35 3.67
430 459 2.208431 GGTTGATCGCTTCATCTCCAG 58.792 52.381 0.00 0.00 33.34 3.86
431 460 2.159043 GGTTGATCGCTTCATCTCCAGA 60.159 50.000 0.00 0.00 33.34 3.86
432 461 2.863137 GTTGATCGCTTCATCTCCAGAC 59.137 50.000 0.00 0.00 33.34 3.51
433 462 2.382882 TGATCGCTTCATCTCCAGACT 58.617 47.619 0.00 0.00 0.00 3.24
435 464 1.107114 TCGCTTCATCTCCAGACTCC 58.893 55.000 0.00 0.00 0.00 3.85
436 465 0.820226 CGCTTCATCTCCAGACTCCA 59.180 55.000 0.00 0.00 0.00 3.86
437 466 1.205655 CGCTTCATCTCCAGACTCCAA 59.794 52.381 0.00 0.00 0.00 3.53
438 467 2.738000 CGCTTCATCTCCAGACTCCAAG 60.738 54.545 0.00 0.00 0.00 3.61
439 468 2.235898 GCTTCATCTCCAGACTCCAAGT 59.764 50.000 0.00 0.00 0.00 3.16
440 469 3.859443 CTTCATCTCCAGACTCCAAGTG 58.141 50.000 0.00 0.00 0.00 3.16
441 470 1.552337 TCATCTCCAGACTCCAAGTGC 59.448 52.381 0.00 0.00 0.00 4.40
442 471 0.908198 ATCTCCAGACTCCAAGTGCC 59.092 55.000 0.00 0.00 0.00 5.01
443 472 0.178921 TCTCCAGACTCCAAGTGCCT 60.179 55.000 0.00 0.00 0.00 4.75
444 473 0.036577 CTCCAGACTCCAAGTGCCTG 60.037 60.000 0.00 0.00 0.00 4.85
445 474 0.471780 TCCAGACTCCAAGTGCCTGA 60.472 55.000 0.00 0.00 0.00 3.86
446 475 0.036577 CCAGACTCCAAGTGCCTGAG 60.037 60.000 0.00 0.00 0.00 3.35
447 476 0.673022 CAGACTCCAAGTGCCTGAGC 60.673 60.000 0.00 0.00 40.48 4.26
456 485 2.831043 TGCCTGAGCACTGAGCAA 59.169 55.556 0.00 0.00 46.52 3.91
458 487 0.958876 TGCCTGAGCACTGAGCAATG 60.959 55.000 0.00 0.00 46.52 2.82
569 605 1.361668 GAAGCTCGGCGATTTGCTCA 61.362 55.000 20.24 0.00 45.43 4.26
583 619 2.092882 GCTCACCGGCGAGTACAAC 61.093 63.158 20.22 0.00 35.33 3.32
593 629 1.871039 GCGAGTACAACCTGCTCAAAA 59.129 47.619 0.00 0.00 31.16 2.44
709 750 1.780503 AACAAGAAAAGTGCTGGGCT 58.219 45.000 0.00 0.00 0.00 5.19
714 755 0.538287 GAAAAGTGCTGGGCTGAGGT 60.538 55.000 0.00 0.00 0.00 3.85
769 810 1.874019 CGACGACTTCATGCTCCGG 60.874 63.158 0.00 0.00 0.00 5.14
784 825 2.264480 CGGGTGGAATGCGAGTCA 59.736 61.111 0.00 0.00 0.00 3.41
785 826 1.375396 CGGGTGGAATGCGAGTCAA 60.375 57.895 0.00 0.00 0.00 3.18
817 858 2.181975 CATGGCTTCAAGGGGTTCATT 58.818 47.619 0.00 0.00 0.00 2.57
845 886 1.264020 GCATGAACTTGCTGACGACAA 59.736 47.619 0.00 0.00 39.57 3.18
855 1155 2.284263 CTGACGACAATCAGCAGCTA 57.716 50.000 0.00 0.00 39.77 3.32
978 1278 5.659079 TGTTTCTGTGTCCCAAAAACCTAAT 59.341 36.000 0.00 0.00 0.00 1.73
1020 1320 0.534412 TGCTCTCTCAAGCTGGCTAC 59.466 55.000 0.00 0.00 42.94 3.58
1021 1321 0.534412 GCTCTCTCAAGCTGGCTACA 59.466 55.000 0.00 0.00 39.27 2.74
1042 1342 6.575244 ACATGGTCCTGGATCAAACTAATA 57.425 37.500 14.68 0.00 0.00 0.98
1139 1440 6.647895 TGGAAATGACTTTACTCCGAAGTAAC 59.352 38.462 0.00 0.00 42.43 2.50
1154 1455 8.503458 TCCGAAGTAACCTATATATAGTGCTC 57.497 38.462 16.78 6.58 0.00 4.26
1179 1480 8.247562 TCGGTTTATTTTTGTGGGAAGATATTG 58.752 33.333 0.00 0.00 0.00 1.90
1193 1494 6.095440 GGGAAGATATTGTTTTAGCTTGCTGA 59.905 38.462 5.26 0.00 36.52 4.26
1252 1554 7.800300 AGAAACTTACATCTTAGACCCTCTT 57.200 36.000 0.00 0.00 0.00 2.85
1296 1598 8.745590 TGAAATTAGTTAAGCCATTAAGTTCCC 58.254 33.333 0.00 0.00 36.26 3.97
1362 1666 6.959671 TTTTGTTGGTCACTGAAAAACATC 57.040 33.333 8.06 0.00 31.34 3.06
1368 1672 6.030548 TGGTCACTGAAAAACATCACAAAA 57.969 33.333 0.00 0.00 0.00 2.44
1370 1674 7.102346 TGGTCACTGAAAAACATCACAAAATT 58.898 30.769 0.00 0.00 0.00 1.82
1371 1675 7.605691 TGGTCACTGAAAAACATCACAAAATTT 59.394 29.630 0.00 0.00 0.00 1.82
1373 1677 9.900264 GTCACTGAAAAACATCACAAAATTTAC 57.100 29.630 0.00 0.00 0.00 2.01
1374 1678 9.645059 TCACTGAAAAACATCACAAAATTTACA 57.355 25.926 0.00 0.00 0.00 2.41
1375 1679 9.687717 CACTGAAAAACATCACAAAATTTACAC 57.312 29.630 0.00 0.00 0.00 2.90
1376 1680 9.651913 ACTGAAAAACATCACAAAATTTACACT 57.348 25.926 0.00 0.00 0.00 3.55
1383 1687 9.528018 AACATCACAAAATTTACACTAGTTTGG 57.472 29.630 0.00 0.00 34.28 3.28
1384 1688 8.908903 ACATCACAAAATTTACACTAGTTTGGA 58.091 29.630 0.00 0.00 34.28 3.53
1385 1689 9.398170 CATCACAAAATTTACACTAGTTTGGAG 57.602 33.333 0.00 0.00 34.28 3.86
1386 1690 8.740123 TCACAAAATTTACACTAGTTTGGAGA 57.260 30.769 0.00 0.00 34.28 3.71
1387 1691 9.179909 TCACAAAATTTACACTAGTTTGGAGAA 57.820 29.630 0.00 0.00 34.28 2.87
1388 1692 9.965824 CACAAAATTTACACTAGTTTGGAGAAT 57.034 29.630 0.00 0.00 34.28 2.40
1396 1700 9.841295 TTACACTAGTTTGGAGAATTAAACACT 57.159 29.630 0.00 0.00 38.82 3.55
1398 1702 9.490379 ACACTAGTTTGGAGAATTAAACACTAG 57.510 33.333 0.00 0.00 38.82 2.57
1399 1703 9.490379 CACTAGTTTGGAGAATTAAACACTAGT 57.510 33.333 0.00 0.00 38.82 2.57
1403 1707 9.403583 AGTTTGGAGAATTAAACACTAGTTTGA 57.596 29.630 0.00 0.00 46.84 2.69
1404 1708 9.665264 GTTTGGAGAATTAAACACTAGTTTGAG 57.335 33.333 0.00 0.00 46.84 3.02
1405 1709 7.979444 TGGAGAATTAAACACTAGTTTGAGG 57.021 36.000 0.00 0.00 46.84 3.86
1406 1710 7.741785 TGGAGAATTAAACACTAGTTTGAGGA 58.258 34.615 0.00 0.00 46.84 3.71
1407 1711 8.215050 TGGAGAATTAAACACTAGTTTGAGGAA 58.785 33.333 0.00 0.00 46.84 3.36
1408 1712 9.232473 GGAGAATTAAACACTAGTTTGAGGAAT 57.768 33.333 0.00 0.00 46.84 3.01
1432 1736 5.741388 AAACACTAGTTTGCAAGTCAGAG 57.259 39.130 0.00 0.00 45.79 3.35
1433 1737 4.408182 ACACTAGTTTGCAAGTCAGAGT 57.592 40.909 0.00 0.20 0.00 3.24
1479 1791 5.515548 TTCTCGAAGTCAAATGAACATCG 57.484 39.130 7.17 7.17 0.00 3.84
1491 1804 7.946237 GTCAAATGAACATCGCAATTTTACAAG 59.054 33.333 0.00 0.00 0.00 3.16
1546 1871 4.022068 ACACCTGCATATGGTTCTGTTTTG 60.022 41.667 4.56 0.00 35.28 2.44
1560 1885 6.978080 GGTTCTGTTTTGAAGCATTTACTCAA 59.022 34.615 0.00 0.00 42.14 3.02
1583 1908 4.935702 TGATTCACAGAAAAACAAGGCAG 58.064 39.130 0.00 0.00 0.00 4.85
1585 1910 1.065401 TCACAGAAAAACAAGGCAGCG 59.935 47.619 0.00 0.00 0.00 5.18
1587 1912 1.202290 ACAGAAAAACAAGGCAGCGTG 60.202 47.619 0.00 0.00 0.00 5.34
1588 1913 1.065401 CAGAAAAACAAGGCAGCGTGA 59.935 47.619 1.83 0.00 0.00 4.35
1589 1914 1.334869 AGAAAAACAAGGCAGCGTGAG 59.665 47.619 1.83 0.00 0.00 3.51
1610 1935 3.467803 GCCGTGAGCTACCATTTATTCT 58.532 45.455 0.00 0.00 38.99 2.40
1654 1979 0.476338 TGGCACCACTAAGGCTGAAA 59.524 50.000 0.00 0.00 43.14 2.69
1660 2009 4.035675 GCACCACTAAGGCTGAAATATCAC 59.964 45.833 0.00 0.00 43.14 3.06
1661 2010 5.431765 CACCACTAAGGCTGAAATATCACT 58.568 41.667 0.00 0.00 43.14 3.41
1662 2011 5.525378 CACCACTAAGGCTGAAATATCACTC 59.475 44.000 0.00 0.00 43.14 3.51
1663 2012 5.426833 ACCACTAAGGCTGAAATATCACTCT 59.573 40.000 0.00 0.00 43.14 3.24
1665 2014 6.259608 CCACTAAGGCTGAAATATCACTCTTG 59.740 42.308 0.00 0.00 30.26 3.02
1666 2015 6.820656 CACTAAGGCTGAAATATCACTCTTGT 59.179 38.462 0.00 0.00 30.26 3.16
1667 2016 7.981789 CACTAAGGCTGAAATATCACTCTTGTA 59.018 37.037 0.00 0.00 30.26 2.41
1668 2017 8.540388 ACTAAGGCTGAAATATCACTCTTGTAA 58.460 33.333 0.00 0.00 30.26 2.41
1669 2018 7.856145 AAGGCTGAAATATCACTCTTGTAAG 57.144 36.000 0.00 0.00 0.00 2.34
1670 2019 6.352516 AGGCTGAAATATCACTCTTGTAAGG 58.647 40.000 0.00 0.00 0.00 2.69
1671 2020 6.156949 AGGCTGAAATATCACTCTTGTAAGGA 59.843 38.462 0.00 0.00 0.00 3.36
1672 2021 6.995091 GGCTGAAATATCACTCTTGTAAGGAT 59.005 38.462 0.00 0.00 0.00 3.24
1673 2022 7.172361 GGCTGAAATATCACTCTTGTAAGGATC 59.828 40.741 0.00 0.00 0.00 3.36
1674 2023 7.712639 GCTGAAATATCACTCTTGTAAGGATCA 59.287 37.037 0.00 0.00 0.00 2.92
1675 2024 9.775854 CTGAAATATCACTCTTGTAAGGATCAT 57.224 33.333 0.00 0.00 0.00 2.45
1676 2025 9.770097 TGAAATATCACTCTTGTAAGGATCATC 57.230 33.333 0.00 0.00 0.00 2.92
1677 2026 9.770097 GAAATATCACTCTTGTAAGGATCATCA 57.230 33.333 0.00 0.00 0.00 3.07
1679 2028 9.775854 AATATCACTCTTGTAAGGATCATCAAG 57.224 33.333 3.16 3.16 38.69 3.02
1680 2029 6.611613 TCACTCTTGTAAGGATCATCAAGT 57.388 37.500 8.21 0.00 38.53 3.16
1681 2030 7.718334 TCACTCTTGTAAGGATCATCAAGTA 57.282 36.000 8.21 0.00 38.53 2.24
1682 2031 8.311395 TCACTCTTGTAAGGATCATCAAGTAT 57.689 34.615 8.21 0.00 38.53 2.12
1683 2032 9.421399 TCACTCTTGTAAGGATCATCAAGTATA 57.579 33.333 8.21 0.00 38.53 1.47
1686 2035 9.149225 CTCTTGTAAGGATCATCAAGTATATGC 57.851 37.037 8.21 0.00 38.53 3.14
1687 2036 8.650490 TCTTGTAAGGATCATCAAGTATATGCA 58.350 33.333 8.21 0.00 38.53 3.96
1688 2037 8.837788 TTGTAAGGATCATCAAGTATATGCAG 57.162 34.615 0.00 0.00 0.00 4.41
1689 2038 8.193953 TGTAAGGATCATCAAGTATATGCAGA 57.806 34.615 0.00 0.00 0.00 4.26
1690 2039 8.819845 TGTAAGGATCATCAAGTATATGCAGAT 58.180 33.333 0.00 0.00 0.00 2.90
1752 2101 5.872617 GGTGTGTTTTAGCCTTTTGAAGTTT 59.127 36.000 0.00 0.00 0.00 2.66
1755 2104 9.738832 GTGTGTTTTAGCCTTTTGAAGTTTATA 57.261 29.630 0.00 0.00 0.00 0.98
1760 2109 9.471084 TTTTAGCCTTTTGAAGTTTATACTTGC 57.529 29.630 3.08 0.24 44.51 4.01
1766 2115 9.528018 CCTTTTGAAGTTTATACTTGCAGAAAA 57.472 29.630 3.08 3.58 44.51 2.29
1773 2122 8.045176 AGTTTATACTTGCAGAAAATGAGGAC 57.955 34.615 0.00 0.00 0.00 3.85
1795 2144 8.924303 AGGACGCTTATTATGCTCCATATAATA 58.076 33.333 15.68 0.00 33.85 0.98
1847 2196 2.093235 TGACGACATATGGGATGCAACA 60.093 45.455 7.80 0.00 0.00 3.33
1860 2209 3.936453 GGATGCAACAACGTGGAGTATTA 59.064 43.478 0.00 0.00 0.00 0.98
1865 2214 5.583061 TGCAACAACGTGGAGTATTATTAGG 59.417 40.000 0.00 0.00 0.00 2.69
1919 2268 7.817962 AGCAGAGTAATAACAACTACACGAATT 59.182 33.333 0.00 0.00 0.00 2.17
1921 2270 8.922676 CAGAGTAATAACAACTACACGAATTGT 58.077 33.333 0.00 0.00 42.84 2.71
2080 2429 4.151867 AGACGTTTCGGCTGAAATTCTAAC 59.848 41.667 23.02 9.46 46.62 2.34
2637 2986 4.040829 TGATAGATGGCACTACATTGGGAG 59.959 45.833 0.00 0.00 0.00 4.30
2711 3060 0.103208 CGCCGCCTCTATCAGAGTTT 59.897 55.000 2.71 0.00 40.72 2.66
2724 3073 4.801330 TCAGAGTTTAAGCATCTCCGAA 57.199 40.909 0.00 0.00 0.00 4.30
2726 3075 5.352284 TCAGAGTTTAAGCATCTCCGAATC 58.648 41.667 0.00 0.00 0.00 2.52
2851 3200 7.450014 TGAAATAGTGCTACCAAGGAAAATTCA 59.550 33.333 0.00 0.00 0.00 2.57
2938 3287 2.874086 CAGATATTGTTCATCTGCGCCA 59.126 45.455 4.18 0.00 42.05 5.69
2963 3312 2.890808 TGCACCTGATCGTTCCTATC 57.109 50.000 0.00 0.00 0.00 2.08
2987 3336 4.104897 GGGATAAGTTTGCCCTCTAGGATT 59.895 45.833 0.00 0.00 38.85 3.01
3067 3416 1.479709 AACATCAGAGACCTCGGAGG 58.520 55.000 22.40 22.40 40.43 4.30
3126 3475 1.281867 ACCGGAAGCAATTGGATGAGA 59.718 47.619 9.46 0.00 0.00 3.27
3135 3484 3.181499 GCAATTGGATGAGACAGAAGCAG 60.181 47.826 7.72 0.00 0.00 4.24
3153 3502 9.362539 CAGAAGCAGCAAAACTTATGAATATTT 57.637 29.630 0.00 0.00 37.30 1.40
3272 3621 4.082523 CCCCGCCTTCTTCGCAGA 62.083 66.667 0.00 0.00 0.00 4.26
3294 3643 0.179113 CCATTTACGGGGTTGCATGC 60.179 55.000 11.82 11.82 0.00 4.06
3309 3658 0.319900 CATGCTATCGAGGGTTCCCG 60.320 60.000 1.91 0.00 0.00 5.14
3320 3669 0.546598 GGGTTCCCGAGTGGATTCAT 59.453 55.000 0.00 0.00 44.66 2.57
3363 3712 1.227586 GCGCTAGGGGTTAAGGAGC 60.228 63.158 9.09 0.00 0.00 4.70
3376 3725 2.431954 AAGGAGCTGTTGGATGATGG 57.568 50.000 0.00 0.00 0.00 3.51
3417 3766 1.222936 CACTCCCTCATCCACCTGC 59.777 63.158 0.00 0.00 0.00 4.85
3646 3997 0.251634 CAGGCCTCAAGGAAGTCTCC 59.748 60.000 0.00 0.00 42.81 3.71
3667 4018 0.037590 TACGCATTGGGGGATATGGC 59.962 55.000 5.65 0.00 0.00 4.40
3679 4030 1.078759 GATATGGCGCCGAGGAATCG 61.079 60.000 23.90 0.00 0.00 3.34
3700 4051 2.741598 GCAAGAGCTGCGCAGTCT 60.742 61.111 35.80 30.96 42.37 3.24
3732 4083 3.183130 CCATTGGCATACACCCGAA 57.817 52.632 0.00 0.00 0.00 4.30
3741 4092 3.131396 GCATACACCCGAATTGTCCTAG 58.869 50.000 0.00 0.00 0.00 3.02
3760 4111 5.105716 TCCTAGAGCTAACATCAAGTGTGAC 60.106 44.000 0.00 0.00 41.14 3.67
3771 4122 3.642705 TCAAGTGTGACGAGAACATGAG 58.357 45.455 0.00 0.00 0.00 2.90
3789 4140 8.450578 AACATGAGTTTCACTTTTGATGACTA 57.549 30.769 0.00 0.00 33.11 2.59
3790 4141 8.092521 ACATGAGTTTCACTTTTGATGACTAG 57.907 34.615 0.00 0.00 31.85 2.57
3793 4144 8.370493 TGAGTTTCACTTTTGATGACTAGAAG 57.630 34.615 0.00 0.00 31.85 2.85
3842 4201 3.420893 TGAAGTCCAAATGCTGGTAAGG 58.579 45.455 0.00 0.00 46.51 2.69
3881 4240 4.397103 GGCAACTAATAACCCTAACACCAC 59.603 45.833 0.00 0.00 0.00 4.16
3883 4242 5.562635 CAACTAATAACCCTAACACCACCA 58.437 41.667 0.00 0.00 0.00 4.17
3934 4293 1.749286 GCTTGCGCCCTTTATTCCCTA 60.749 52.381 4.18 0.00 0.00 3.53
3986 4345 6.135290 TGTGAAACTCTTTCCACATTTCTG 57.865 37.500 0.00 0.00 38.90 3.02
4025 4384 7.789273 TTTCATGTGAAGTTCATGCAAAAAT 57.211 28.000 9.18 0.00 41.40 1.82
4110 4570 2.902486 AGCTGGACTGATGAACTCTTCA 59.098 45.455 0.00 0.00 45.01 3.02
4114 4574 5.649557 CTGGACTGATGAACTCTTCACTAG 58.350 45.833 0.00 0.00 43.48 2.57
4174 4640 3.179048 CATCTACGTGCTTCATCGTCAA 58.821 45.455 0.00 0.00 40.70 3.18
4307 5442 1.016627 TGTGAGCTTGAGTTGTGTGC 58.983 50.000 0.00 0.00 0.00 4.57
4350 5485 8.991243 ATGAATTGGTGAAAAAGTGATATGTG 57.009 30.769 0.00 0.00 0.00 3.21
4352 5487 9.072375 TGAATTGGTGAAAAAGTGATATGTGTA 57.928 29.630 0.00 0.00 0.00 2.90
4367 5502 8.933955 GTGATATGTGTATGAAATTTCGAAACG 58.066 33.333 13.81 0.00 0.00 3.60
4422 5563 4.579454 CATGGGAAAGCTTATCCATGTG 57.421 45.455 32.10 20.77 46.84 3.21
4424 5565 3.620488 TGGGAAAGCTTATCCATGTGTC 58.380 45.455 21.57 5.51 38.80 3.67
4429 5570 4.679373 AAGCTTATCCATGTGTCGATCT 57.321 40.909 0.00 0.00 0.00 2.75
4431 5572 3.638627 AGCTTATCCATGTGTCGATCTCA 59.361 43.478 0.00 0.00 0.00 3.27
4432 5573 3.738282 GCTTATCCATGTGTCGATCTCAC 59.262 47.826 9.85 9.85 36.48 3.51
4446 5587 1.561643 TCTCACTCGGCTTCTTCCAT 58.438 50.000 0.00 0.00 0.00 3.41
4611 5753 7.826744 TGATGTGTGCTGTTATTATTTGAGGTA 59.173 33.333 0.00 0.00 0.00 3.08
4621 5763 5.669798 ATTATTTGAGGTATCCCTTGCCT 57.330 39.130 0.00 0.00 42.86 4.75
4759 5933 4.125703 GACAGTGCCATCTTGAATCCTAG 58.874 47.826 0.00 0.00 0.00 3.02
4760 5934 3.118112 ACAGTGCCATCTTGAATCCTAGG 60.118 47.826 0.82 0.82 0.00 3.02
4761 5935 3.118112 CAGTGCCATCTTGAATCCTAGGT 60.118 47.826 9.08 0.00 0.00 3.08
4762 5936 4.101585 CAGTGCCATCTTGAATCCTAGGTA 59.898 45.833 9.08 0.00 0.00 3.08
4763 5937 4.346418 AGTGCCATCTTGAATCCTAGGTAG 59.654 45.833 9.08 0.43 0.00 3.18
4764 5938 4.101741 GTGCCATCTTGAATCCTAGGTAGT 59.898 45.833 9.08 0.00 0.00 2.73
4765 5939 4.721776 TGCCATCTTGAATCCTAGGTAGTT 59.278 41.667 9.08 2.57 0.00 2.24
4766 5940 5.191722 TGCCATCTTGAATCCTAGGTAGTTT 59.808 40.000 9.08 0.00 0.00 2.66
4767 5941 6.122964 GCCATCTTGAATCCTAGGTAGTTTT 58.877 40.000 9.08 0.00 0.00 2.43
4768 5942 6.603599 GCCATCTTGAATCCTAGGTAGTTTTT 59.396 38.462 9.08 0.00 0.00 1.94
4769 5943 7.415653 GCCATCTTGAATCCTAGGTAGTTTTTG 60.416 40.741 9.08 0.00 0.00 2.44
4770 5944 7.829211 CCATCTTGAATCCTAGGTAGTTTTTGA 59.171 37.037 9.08 0.11 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.682269 GCCAGAGAAGGTGGAAATCCTC 60.682 54.545 0.44 0.00 37.23 3.71
3 4 1.283321 GCCAGAGAAGGTGGAAATCCT 59.717 52.381 0.44 0.00 37.23 3.24
4 5 1.683319 GGCCAGAGAAGGTGGAAATCC 60.683 57.143 0.00 0.00 37.23 3.01
5 6 1.283321 AGGCCAGAGAAGGTGGAAATC 59.717 52.381 5.01 0.00 37.23 2.17
7 8 1.149101 AAGGCCAGAGAAGGTGGAAA 58.851 50.000 5.01 0.00 37.23 3.13
8 9 1.149101 AAAGGCCAGAGAAGGTGGAA 58.851 50.000 5.01 0.00 37.23 3.53
9 10 2.038863 TAAAGGCCAGAGAAGGTGGA 57.961 50.000 5.01 0.00 37.23 4.02
10 11 2.743183 CGATAAAGGCCAGAGAAGGTGG 60.743 54.545 5.01 0.00 38.21 4.61
11 12 2.555199 CGATAAAGGCCAGAGAAGGTG 58.445 52.381 5.01 0.00 0.00 4.00
12 13 1.486726 CCGATAAAGGCCAGAGAAGGT 59.513 52.381 5.01 0.00 0.00 3.50
13 14 2.246719 CCGATAAAGGCCAGAGAAGG 57.753 55.000 5.01 0.00 0.00 3.46
23 24 0.042188 CAACGATGCGCCGATAAAGG 60.042 55.000 13.02 0.00 0.00 3.11
24 25 0.650512 ACAACGATGCGCCGATAAAG 59.349 50.000 13.02 0.00 0.00 1.85
25 26 1.855978 CTACAACGATGCGCCGATAAA 59.144 47.619 13.02 0.00 0.00 1.40
26 27 1.483316 CTACAACGATGCGCCGATAA 58.517 50.000 13.02 0.00 0.00 1.75
27 28 0.937699 GCTACAACGATGCGCCGATA 60.938 55.000 13.02 2.11 0.00 2.92
28 29 2.237751 GCTACAACGATGCGCCGAT 61.238 57.895 13.02 0.00 0.00 4.18
29 30 2.883730 GCTACAACGATGCGCCGA 60.884 61.111 13.02 0.00 0.00 5.54
30 31 3.925238 GGCTACAACGATGCGCCG 61.925 66.667 4.18 4.34 36.91 6.46
31 32 3.925238 CGGCTACAACGATGCGCC 61.925 66.667 4.18 14.20 40.91 6.53
32 33 3.186047 ACGGCTACAACGATGCGC 61.186 61.111 0.00 0.00 34.93 6.09
33 34 0.799152 TACACGGCTACAACGATGCG 60.799 55.000 0.00 0.00 34.93 4.73
34 35 0.921347 CTACACGGCTACAACGATGC 59.079 55.000 0.00 0.00 34.93 3.91
35 36 1.135199 ACCTACACGGCTACAACGATG 60.135 52.381 0.00 0.00 35.61 3.84
36 37 1.180029 ACCTACACGGCTACAACGAT 58.820 50.000 0.00 0.00 35.61 3.73
37 38 0.961019 AACCTACACGGCTACAACGA 59.039 50.000 0.00 0.00 35.61 3.85
38 39 1.068055 AGAACCTACACGGCTACAACG 60.068 52.381 0.00 0.00 35.61 4.10
39 40 2.738013 AGAACCTACACGGCTACAAC 57.262 50.000 0.00 0.00 35.61 3.32
40 41 5.047164 TCAATAAGAACCTACACGGCTACAA 60.047 40.000 0.00 0.00 35.61 2.41
41 42 4.463539 TCAATAAGAACCTACACGGCTACA 59.536 41.667 0.00 0.00 35.61 2.74
42 43 5.002464 TCAATAAGAACCTACACGGCTAC 57.998 43.478 0.00 0.00 35.61 3.58
43 44 5.864418 ATCAATAAGAACCTACACGGCTA 57.136 39.130 0.00 0.00 35.61 3.93
44 45 4.755266 ATCAATAAGAACCTACACGGCT 57.245 40.909 0.00 0.00 35.61 5.52
45 46 4.873827 TGAATCAATAAGAACCTACACGGC 59.126 41.667 0.00 0.00 35.61 5.68
46 47 6.338146 TCTGAATCAATAAGAACCTACACGG 58.662 40.000 0.00 0.00 39.35 4.94
47 48 8.969267 GTATCTGAATCAATAAGAACCTACACG 58.031 37.037 0.00 0.00 0.00 4.49
48 49 9.817809 TGTATCTGAATCAATAAGAACCTACAC 57.182 33.333 0.00 0.00 0.00 2.90
49 50 9.817809 GTGTATCTGAATCAATAAGAACCTACA 57.182 33.333 0.00 0.00 0.00 2.74
50 51 9.817809 TGTGTATCTGAATCAATAAGAACCTAC 57.182 33.333 0.00 0.00 0.00 3.18
58 59 8.724229 GCAGCATATGTGTATCTGAATCAATAA 58.276 33.333 4.29 0.00 0.00 1.40
59 60 7.879160 TGCAGCATATGTGTATCTGAATCAATA 59.121 33.333 4.29 0.00 0.00 1.90
60 61 6.713450 TGCAGCATATGTGTATCTGAATCAAT 59.287 34.615 4.29 0.00 0.00 2.57
61 62 6.056884 TGCAGCATATGTGTATCTGAATCAA 58.943 36.000 4.29 0.00 0.00 2.57
62 63 5.613329 TGCAGCATATGTGTATCTGAATCA 58.387 37.500 4.29 0.00 0.00 2.57
63 64 6.370718 TGATGCAGCATATGTGTATCTGAATC 59.629 38.462 23.18 19.93 39.27 2.52
64 65 6.235664 TGATGCAGCATATGTGTATCTGAAT 58.764 36.000 23.18 14.73 37.76 2.57
65 66 5.613329 TGATGCAGCATATGTGTATCTGAA 58.387 37.500 23.18 11.70 37.76 3.02
66 67 5.217978 TGATGCAGCATATGTGTATCTGA 57.782 39.130 23.18 11.46 37.76 3.27
67 68 5.532025 CTGATGCAGCATATGTGTATCTG 57.468 43.478 23.18 20.67 37.76 2.90
83 84 2.772691 GCCTGCCTCTTGCTGATGC 61.773 63.158 0.00 0.00 41.11 3.91
84 85 1.377366 CTGCCTGCCTCTTGCTGATG 61.377 60.000 0.00 0.00 41.11 3.07
85 86 1.077644 CTGCCTGCCTCTTGCTGAT 60.078 57.895 0.00 0.00 41.11 2.90
86 87 2.350134 CTGCCTGCCTCTTGCTGA 59.650 61.111 0.00 0.00 41.11 4.26
87 88 3.441290 GCTGCCTGCCTCTTGCTG 61.441 66.667 0.00 0.00 42.00 4.41
90 91 3.123620 GACGCTGCCTGCCTCTTG 61.124 66.667 0.00 0.00 38.78 3.02
91 92 3.602513 CTGACGCTGCCTGCCTCTT 62.603 63.158 0.00 0.00 38.78 2.85
92 93 4.079850 CTGACGCTGCCTGCCTCT 62.080 66.667 0.00 0.00 38.78 3.69
93 94 3.596066 TTCTGACGCTGCCTGCCTC 62.596 63.158 0.00 0.00 38.78 4.70
94 95 3.630013 TTCTGACGCTGCCTGCCT 61.630 61.111 0.00 0.00 38.78 4.75
95 96 3.426568 GTTCTGACGCTGCCTGCC 61.427 66.667 0.00 0.00 38.78 4.85
96 97 2.358003 AGTTCTGACGCTGCCTGC 60.358 61.111 0.00 0.00 38.57 4.85
97 98 1.005748 TGAGTTCTGACGCTGCCTG 60.006 57.895 0.00 0.00 0.00 4.85
98 99 1.181741 TCTGAGTTCTGACGCTGCCT 61.182 55.000 0.00 0.00 0.00 4.75
99 100 0.319900 TTCTGAGTTCTGACGCTGCC 60.320 55.000 0.00 0.00 0.00 4.85
100 101 0.787183 GTTCTGAGTTCTGACGCTGC 59.213 55.000 0.00 0.00 0.00 5.25
101 102 2.430546 AGTTCTGAGTTCTGACGCTG 57.569 50.000 0.00 0.00 0.00 5.18
102 103 3.570550 AGTTAGTTCTGAGTTCTGACGCT 59.429 43.478 0.00 0.00 0.00 5.07
103 104 3.670991 CAGTTAGTTCTGAGTTCTGACGC 59.329 47.826 0.00 0.00 37.61 5.19
104 105 4.861210 ACAGTTAGTTCTGAGTTCTGACG 58.139 43.478 0.65 0.00 38.63 4.35
105 106 5.833082 TGACAGTTAGTTCTGAGTTCTGAC 58.167 41.667 0.65 0.00 38.63 3.51
106 107 6.096987 ACTTGACAGTTAGTTCTGAGTTCTGA 59.903 38.462 0.65 0.00 38.63 3.27
107 108 6.276847 ACTTGACAGTTAGTTCTGAGTTCTG 58.723 40.000 0.65 0.00 38.63 3.02
108 109 6.472686 ACTTGACAGTTAGTTCTGAGTTCT 57.527 37.500 0.65 0.00 38.63 3.01
109 110 7.541122 AAACTTGACAGTTAGTTCTGAGTTC 57.459 36.000 0.65 0.00 42.89 3.01
110 111 7.923414 AAAACTTGACAGTTAGTTCTGAGTT 57.077 32.000 0.65 0.00 42.89 3.01
111 112 8.258708 AGTAAAACTTGACAGTTAGTTCTGAGT 58.741 33.333 0.65 0.00 42.89 3.41
112 113 8.649973 AGTAAAACTTGACAGTTAGTTCTGAG 57.350 34.615 0.65 0.00 42.89 3.35
113 114 9.444600 AAAGTAAAACTTGACAGTTAGTTCTGA 57.555 29.630 0.65 0.00 42.89 3.27
116 117 8.795341 GCAAAAGTAAAACTTGACAGTTAGTTC 58.205 33.333 3.29 0.00 42.89 3.01
117 118 8.520351 AGCAAAAGTAAAACTTGACAGTTAGTT 58.480 29.630 0.00 0.00 42.89 2.24
118 119 8.051901 AGCAAAAGTAAAACTTGACAGTTAGT 57.948 30.769 0.00 0.00 42.89 2.24
119 120 8.798153 CAAGCAAAAGTAAAACTTGACAGTTAG 58.202 33.333 0.00 0.00 42.89 2.34
120 121 8.301002 ACAAGCAAAAGTAAAACTTGACAGTTA 58.699 29.630 7.95 0.00 42.89 2.24
121 122 7.116233 CACAAGCAAAAGTAAAACTTGACAGTT 59.884 33.333 7.95 0.00 45.89 3.16
122 123 6.586082 CACAAGCAAAAGTAAAACTTGACAGT 59.414 34.615 7.95 0.00 38.66 3.55
123 124 6.586082 ACACAAGCAAAAGTAAAACTTGACAG 59.414 34.615 7.95 1.13 38.66 3.51
124 125 6.451393 ACACAAGCAAAAGTAAAACTTGACA 58.549 32.000 7.95 0.00 38.66 3.58
125 126 6.944557 ACACAAGCAAAAGTAAAACTTGAC 57.055 33.333 7.95 0.00 38.66 3.18
126 127 6.367422 CCAACACAAGCAAAAGTAAAACTTGA 59.633 34.615 7.95 0.00 38.66 3.02
127 128 6.147000 ACCAACACAAGCAAAAGTAAAACTTG 59.853 34.615 0.00 0.00 38.66 3.16
128 129 6.227522 ACCAACACAAGCAAAAGTAAAACTT 58.772 32.000 0.00 0.00 40.80 2.66
129 130 5.789521 ACCAACACAAGCAAAAGTAAAACT 58.210 33.333 0.00 0.00 0.00 2.66
130 131 6.254804 CCTACCAACACAAGCAAAAGTAAAAC 59.745 38.462 0.00 0.00 0.00 2.43
131 132 6.334202 CCTACCAACACAAGCAAAAGTAAAA 58.666 36.000 0.00 0.00 0.00 1.52
132 133 5.680151 GCCTACCAACACAAGCAAAAGTAAA 60.680 40.000 0.00 0.00 0.00 2.01
133 134 4.202070 GCCTACCAACACAAGCAAAAGTAA 60.202 41.667 0.00 0.00 0.00 2.24
134 135 3.316868 GCCTACCAACACAAGCAAAAGTA 59.683 43.478 0.00 0.00 0.00 2.24
135 136 2.100749 GCCTACCAACACAAGCAAAAGT 59.899 45.455 0.00 0.00 0.00 2.66
136 137 2.362077 AGCCTACCAACACAAGCAAAAG 59.638 45.455 0.00 0.00 0.00 2.27
137 138 2.383855 AGCCTACCAACACAAGCAAAA 58.616 42.857 0.00 0.00 0.00 2.44
138 139 2.065899 AGCCTACCAACACAAGCAAA 57.934 45.000 0.00 0.00 0.00 3.68
139 140 2.940994 TAGCCTACCAACACAAGCAA 57.059 45.000 0.00 0.00 0.00 3.91
140 141 2.882137 GTTTAGCCTACCAACACAAGCA 59.118 45.455 0.00 0.00 0.00 3.91
141 142 3.058224 CAGTTTAGCCTACCAACACAAGC 60.058 47.826 0.00 0.00 0.00 4.01
142 143 3.058224 GCAGTTTAGCCTACCAACACAAG 60.058 47.826 0.00 0.00 0.00 3.16
143 144 2.882137 GCAGTTTAGCCTACCAACACAA 59.118 45.455 0.00 0.00 0.00 3.33
144 145 2.105821 AGCAGTTTAGCCTACCAACACA 59.894 45.455 0.00 0.00 34.23 3.72
145 146 2.779506 AGCAGTTTAGCCTACCAACAC 58.220 47.619 0.00 0.00 34.23 3.32
146 147 4.837093 ATAGCAGTTTAGCCTACCAACA 57.163 40.909 0.00 0.00 34.23 3.33
147 148 4.941873 ACAATAGCAGTTTAGCCTACCAAC 59.058 41.667 0.00 0.00 34.23 3.77
148 149 5.174037 ACAATAGCAGTTTAGCCTACCAA 57.826 39.130 0.00 0.00 34.23 3.67
149 150 4.837093 ACAATAGCAGTTTAGCCTACCA 57.163 40.909 0.00 0.00 34.23 3.25
150 151 6.110707 TGTAACAATAGCAGTTTAGCCTACC 58.889 40.000 0.00 0.00 34.23 3.18
151 152 7.039882 TCTGTAACAATAGCAGTTTAGCCTAC 58.960 38.462 0.00 0.00 34.23 3.18
152 153 7.177832 TCTGTAACAATAGCAGTTTAGCCTA 57.822 36.000 0.00 0.00 34.23 3.93
153 154 6.049955 TCTGTAACAATAGCAGTTTAGCCT 57.950 37.500 0.00 0.00 34.23 4.58
154 155 6.737254 TTCTGTAACAATAGCAGTTTAGCC 57.263 37.500 0.00 0.00 34.23 3.93
183 184 8.896744 TGACAATGGAGAAAGATAAAAGCATAG 58.103 33.333 0.00 0.00 0.00 2.23
184 185 8.806429 TGACAATGGAGAAAGATAAAAGCATA 57.194 30.769 0.00 0.00 0.00 3.14
186 187 7.177216 ACATGACAATGGAGAAAGATAAAAGCA 59.823 33.333 0.00 0.00 38.19 3.91
188 189 8.954350 AGACATGACAATGGAGAAAGATAAAAG 58.046 33.333 0.00 0.00 38.19 2.27
189 190 8.868522 AGACATGACAATGGAGAAAGATAAAA 57.131 30.769 0.00 0.00 38.19 1.52
195 196 6.409704 TCCTAAGACATGACAATGGAGAAAG 58.590 40.000 0.00 0.00 38.19 2.62
212 213 6.426587 CAATCTTTTCTCCCCAATCCTAAGA 58.573 40.000 0.00 0.00 0.00 2.10
235 237 1.211703 TGTTTGTGGTCTCTTCCTGCA 59.788 47.619 0.00 0.00 0.00 4.41
249 251 0.748450 AAGCAGCAGCACATGTTTGT 59.252 45.000 3.17 0.00 45.49 2.83
266 270 4.074970 ACCCTTGTCAGTTATTGAGCAAG 58.925 43.478 10.55 10.55 40.59 4.01
274 278 6.151144 GCACAAAGATTACCCTTGTCAGTTAT 59.849 38.462 0.00 0.00 0.00 1.89
278 282 4.074970 AGCACAAAGATTACCCTTGTCAG 58.925 43.478 0.00 0.00 0.00 3.51
279 283 3.820467 CAGCACAAAGATTACCCTTGTCA 59.180 43.478 0.00 0.00 0.00 3.58
283 287 2.558359 GCACAGCACAAAGATTACCCTT 59.442 45.455 0.00 0.00 0.00 3.95
286 290 2.162408 GAGGCACAGCACAAAGATTACC 59.838 50.000 0.00 0.00 0.00 2.85
299 303 0.951040 GTGGAACGAAGGAGGCACAG 60.951 60.000 0.00 0.00 0.00 3.66
321 326 2.296190 GGTTGGGGTCTGAAATTGACAC 59.704 50.000 0.00 0.00 37.14 3.67
322 327 2.593026 GGTTGGGGTCTGAAATTGACA 58.407 47.619 0.00 0.00 36.26 3.58
327 332 1.786441 TCTTGGGTTGGGGTCTGAAAT 59.214 47.619 0.00 0.00 0.00 2.17
364 369 6.129179 TCCACTCCATTTCTCTGTTTTCTTT 58.871 36.000 0.00 0.00 0.00 2.52
376 401 3.269178 CAGAGAAGCTCCACTCCATTTC 58.731 50.000 10.50 0.00 34.13 2.17
389 414 0.758123 AGGAGGCATAGCAGAGAAGC 59.242 55.000 0.00 0.00 0.00 3.86
411 440 2.863137 GTCTGGAGATGAAGCGATCAAC 59.137 50.000 0.00 0.00 42.54 3.18
413 442 2.360483 GAGTCTGGAGATGAAGCGATCA 59.640 50.000 0.00 0.00 43.67 2.92
430 459 1.372683 TGCTCAGGCACTTGGAGTC 59.627 57.895 0.00 0.00 44.28 3.36
431 460 3.567308 TGCTCAGGCACTTGGAGT 58.433 55.556 0.00 0.00 44.28 3.85
440 469 0.675837 TCATTGCTCAGTGCTCAGGC 60.676 55.000 0.00 0.00 43.37 4.85
441 470 1.085091 GTCATTGCTCAGTGCTCAGG 58.915 55.000 0.00 0.00 43.37 3.86
442 471 1.804601 TGTCATTGCTCAGTGCTCAG 58.195 50.000 0.00 0.00 43.37 3.35
443 472 2.081462 CATGTCATTGCTCAGTGCTCA 58.919 47.619 0.00 0.00 43.37 4.26
444 473 2.095532 GTCATGTCATTGCTCAGTGCTC 59.904 50.000 0.00 0.00 43.37 4.26
445 474 2.082231 GTCATGTCATTGCTCAGTGCT 58.918 47.619 0.00 0.00 43.37 4.40
446 475 2.082231 AGTCATGTCATTGCTCAGTGC 58.918 47.619 0.00 0.00 43.25 4.40
447 476 4.001652 AGAAGTCATGTCATTGCTCAGTG 58.998 43.478 0.00 0.00 0.00 3.66
448 477 4.283363 AGAAGTCATGTCATTGCTCAGT 57.717 40.909 0.00 0.00 0.00 3.41
456 485 4.323333 CCTCCACTCAAGAAGTCATGTCAT 60.323 45.833 0.00 0.00 35.45 3.06
458 487 3.594134 CCTCCACTCAAGAAGTCATGTC 58.406 50.000 0.00 0.00 35.45 3.06
462 491 1.722034 AGCCTCCACTCAAGAAGTCA 58.278 50.000 0.00 0.00 35.45 3.41
569 605 2.654877 CAGGTTGTACTCGCCGGT 59.345 61.111 1.90 0.00 0.00 5.28
593 629 1.747355 CATGATCTCGCCCTTTGCTTT 59.253 47.619 0.00 0.00 38.05 3.51
709 750 0.541998 ACAGATCACGGACCACCTCA 60.542 55.000 0.00 0.00 0.00 3.86
714 755 1.471287 CGTAAGACAGATCACGGACCA 59.529 52.381 0.00 0.00 43.02 4.02
769 810 1.197721 CTGTTTGACTCGCATTCCACC 59.802 52.381 0.00 0.00 0.00 4.61
845 886 1.558756 AGAGCACCTTTAGCTGCTGAT 59.441 47.619 13.43 0.00 43.94 2.90
849 890 1.338579 ACAGAGAGCACCTTTAGCTGC 60.339 52.381 0.00 0.00 43.58 5.25
855 1155 1.477558 CCCACAACAGAGAGCACCTTT 60.478 52.381 0.00 0.00 0.00 3.11
1002 1302 0.534412 TGTAGCCAGCTTGAGAGAGC 59.466 55.000 0.00 0.00 43.02 4.09
1020 1320 6.432162 CCATATTAGTTTGATCCAGGACCATG 59.568 42.308 0.00 0.00 0.00 3.66
1021 1321 6.332635 TCCATATTAGTTTGATCCAGGACCAT 59.667 38.462 0.00 0.00 0.00 3.55
1042 1342 3.920841 TGATCCTCATCCCATGATTCCAT 59.079 43.478 0.00 0.00 38.85 3.41
1110 1410 7.230712 ACTTCGGAGTAAAGTCATTTCCAAATT 59.769 33.333 0.00 0.00 31.36 1.82
1154 1455 8.032451 ACAATATCTTCCCACAAAAATAAACCG 58.968 33.333 0.00 0.00 0.00 4.44
1161 1462 8.646900 AGCTAAAACAATATCTTCCCACAAAAA 58.353 29.630 0.00 0.00 0.00 1.94
1179 1480 5.240713 ACAGCATATCAGCAAGCTAAAAC 57.759 39.130 0.00 0.00 35.19 2.43
1193 1494 6.319658 CCACAGGAATTTCTACAACAGCATAT 59.680 38.462 0.00 0.00 0.00 1.78
1343 1647 4.992688 TGTGATGTTTTTCAGTGACCAAC 58.007 39.130 0.00 0.00 0.00 3.77
1344 1648 5.651387 TTGTGATGTTTTTCAGTGACCAA 57.349 34.783 0.00 0.00 0.00 3.67
1345 1649 5.651387 TTTGTGATGTTTTTCAGTGACCA 57.349 34.783 0.00 0.00 0.00 4.02
1346 1650 7.538303 AATTTTGTGATGTTTTTCAGTGACC 57.462 32.000 0.00 0.00 0.00 4.02
1362 1666 9.965824 ATTCTCCAAACTAGTGTAAATTTTGTG 57.034 29.630 0.00 0.00 0.00 3.33
1370 1674 9.841295 AGTGTTTAATTCTCCAAACTAGTGTAA 57.159 29.630 0.00 0.00 35.98 2.41
1373 1677 9.490379 ACTAGTGTTTAATTCTCCAAACTAGTG 57.510 33.333 10.46 0.00 44.41 2.74
1377 1681 9.403583 TCAAACTAGTGTTTAATTCTCCAAACT 57.596 29.630 0.00 0.00 43.75 2.66
1378 1682 9.665264 CTCAAACTAGTGTTTAATTCTCCAAAC 57.335 33.333 0.00 0.00 43.75 2.93
1379 1683 8.846211 CCTCAAACTAGTGTTTAATTCTCCAAA 58.154 33.333 0.00 0.00 43.75 3.28
1380 1684 8.215050 TCCTCAAACTAGTGTTTAATTCTCCAA 58.785 33.333 0.00 0.00 43.75 3.53
1381 1685 7.741785 TCCTCAAACTAGTGTTTAATTCTCCA 58.258 34.615 0.00 0.00 43.75 3.86
1382 1686 8.617290 TTCCTCAAACTAGTGTTTAATTCTCC 57.383 34.615 0.00 0.00 43.75 3.71
1390 1694 9.185680 AGTGTTTAATTCCTCAAACTAGTGTTT 57.814 29.630 0.00 0.00 46.20 2.83
1391 1695 8.747538 AGTGTTTAATTCCTCAAACTAGTGTT 57.252 30.769 0.00 0.00 35.98 3.32
1392 1696 9.490379 CTAGTGTTTAATTCCTCAAACTAGTGT 57.510 33.333 0.00 0.00 35.98 3.55
1393 1697 9.490379 ACTAGTGTTTAATTCCTCAAACTAGTG 57.510 33.333 10.46 0.00 44.41 2.74
1397 1701 8.135529 GCAAACTAGTGTTTAATTCCTCAAACT 58.864 33.333 0.00 0.00 43.75 2.66
1398 1702 7.918562 TGCAAACTAGTGTTTAATTCCTCAAAC 59.081 33.333 0.00 0.00 43.75 2.93
1399 1703 8.001881 TGCAAACTAGTGTTTAATTCCTCAAA 57.998 30.769 0.00 0.00 43.75 2.69
1400 1704 7.575414 TGCAAACTAGTGTTTAATTCCTCAA 57.425 32.000 0.00 0.00 43.75 3.02
1401 1705 7.284489 ACTTGCAAACTAGTGTTTAATTCCTCA 59.716 33.333 0.00 0.00 43.75 3.86
1402 1706 7.649057 ACTTGCAAACTAGTGTTTAATTCCTC 58.351 34.615 0.00 0.00 43.75 3.71
1403 1707 7.284489 TGACTTGCAAACTAGTGTTTAATTCCT 59.716 33.333 0.00 0.00 43.75 3.36
1404 1708 7.422399 TGACTTGCAAACTAGTGTTTAATTCC 58.578 34.615 0.00 0.00 43.75 3.01
1405 1709 8.342634 TCTGACTTGCAAACTAGTGTTTAATTC 58.657 33.333 0.00 0.00 43.75 2.17
1406 1710 8.220755 TCTGACTTGCAAACTAGTGTTTAATT 57.779 30.769 0.00 0.00 43.75 1.40
1407 1711 7.499232 ACTCTGACTTGCAAACTAGTGTTTAAT 59.501 33.333 0.00 0.00 43.75 1.40
1408 1712 6.821665 ACTCTGACTTGCAAACTAGTGTTTAA 59.178 34.615 0.00 0.00 43.75 1.52
1409 1713 6.346096 ACTCTGACTTGCAAACTAGTGTTTA 58.654 36.000 0.00 0.00 43.75 2.01
1410 1714 5.186198 ACTCTGACTTGCAAACTAGTGTTT 58.814 37.500 0.00 0.00 46.20 2.83
1458 1762 3.367932 GCGATGTTCATTTGACTTCGAGA 59.632 43.478 14.13 0.00 0.00 4.04
1459 1763 3.123453 TGCGATGTTCATTTGACTTCGAG 59.877 43.478 14.13 0.00 0.00 4.04
1460 1764 3.063485 TGCGATGTTCATTTGACTTCGA 58.937 40.909 14.13 0.00 0.00 3.71
1461 1765 3.454042 TGCGATGTTCATTTGACTTCG 57.546 42.857 7.80 7.80 0.00 3.79
1464 1768 7.144661 TGTAAAATTGCGATGTTCATTTGACT 58.855 30.769 0.00 0.00 0.00 3.41
1465 1769 7.332003 TGTAAAATTGCGATGTTCATTTGAC 57.668 32.000 0.00 0.00 0.00 3.18
1479 1791 2.753296 TGCAGGCACTTGTAAAATTGC 58.247 42.857 0.00 0.00 34.60 3.56
1534 1859 6.096141 TGAGTAAATGCTTCAAAACAGAACCA 59.904 34.615 0.00 0.00 0.00 3.67
1546 1871 7.755591 TCTGTGAATCATTGAGTAAATGCTTC 58.244 34.615 9.13 9.13 45.45 3.86
1560 1885 5.534207 TGCCTTGTTTTTCTGTGAATCAT 57.466 34.783 0.00 0.00 0.00 2.45
1589 1914 3.467803 AGAATAAATGGTAGCTCACGGC 58.532 45.455 0.00 0.00 42.19 5.68
1590 1915 7.155328 AGAATAGAATAAATGGTAGCTCACGG 58.845 38.462 0.00 0.00 0.00 4.94
1591 1916 9.692749 TTAGAATAGAATAAATGGTAGCTCACG 57.307 33.333 0.00 0.00 0.00 4.35
1610 1935 6.882768 AATGGGCCATTTGGTTTTAGAATA 57.117 33.333 25.94 0.00 37.57 1.75
1628 1953 1.550072 CCTTAGTGGTGCCAAAATGGG 59.450 52.381 0.00 0.00 38.19 4.00
1644 1969 7.987458 CCTTACAAGAGTGATATTTCAGCCTTA 59.013 37.037 0.00 0.00 30.85 2.69
1654 1979 8.932610 ACTTGATGATCCTTACAAGAGTGATAT 58.067 33.333 18.18 0.00 41.16 1.63
1660 2009 9.149225 GCATATACTTGATGATCCTTACAAGAG 57.851 37.037 18.18 8.59 41.16 2.85
1661 2010 8.650490 TGCATATACTTGATGATCCTTACAAGA 58.350 33.333 18.18 8.08 41.16 3.02
1662 2011 8.837788 TGCATATACTTGATGATCCTTACAAG 57.162 34.615 0.00 0.00 43.30 3.16
1663 2012 8.650490 TCTGCATATACTTGATGATCCTTACAA 58.350 33.333 0.00 0.00 0.00 2.41
1665 2014 9.664332 AATCTGCATATACTTGATGATCCTTAC 57.336 33.333 0.00 0.00 0.00 2.34
1666 2015 9.662947 CAATCTGCATATACTTGATGATCCTTA 57.337 33.333 0.00 0.00 0.00 2.69
1667 2016 7.120873 GCAATCTGCATATACTTGATGATCCTT 59.879 37.037 0.00 0.00 44.26 3.36
1668 2017 6.598457 GCAATCTGCATATACTTGATGATCCT 59.402 38.462 0.00 0.00 44.26 3.24
1669 2018 6.783162 GCAATCTGCATATACTTGATGATCC 58.217 40.000 0.00 0.00 44.26 3.36
1685 2034 4.457433 GTTTTCCAAAACTGCAATCTGC 57.543 40.909 7.54 0.00 43.68 4.26
1695 2044 8.004087 ACCTCTACCTTTTAGTTTTCCAAAAC 57.996 34.615 6.79 6.79 46.54 2.43
1708 2057 5.955959 ACACCAAAGAAAACCTCTACCTTTT 59.044 36.000 0.00 0.00 32.46 2.27
1727 2076 4.464597 ACTTCAAAAGGCTAAAACACACCA 59.535 37.500 0.00 0.00 0.00 4.17
1752 2101 4.570772 GCGTCCTCATTTTCTGCAAGTATA 59.429 41.667 0.00 0.00 33.76 1.47
1755 2104 1.537202 GCGTCCTCATTTTCTGCAAGT 59.463 47.619 0.00 0.00 33.76 3.16
1760 2109 6.017605 AGCATAATAAGCGTCCTCATTTTCTG 60.018 38.462 0.00 0.00 37.01 3.02
1766 2115 3.324846 TGGAGCATAATAAGCGTCCTCAT 59.675 43.478 7.23 0.00 37.01 2.90
1795 2144 8.311109 CAATAAAGTACCTGCCAAAAAGGTTAT 58.689 33.333 0.00 0.00 46.14 1.89
1803 2152 8.301002 GTCAATTACAATAAAGTACCTGCCAAA 58.699 33.333 0.00 0.00 0.00 3.28
1847 2196 4.365723 CGCACCTAATAATACTCCACGTT 58.634 43.478 0.00 0.00 0.00 3.99
1860 2209 1.153289 CTGGCAGAGCGCACCTAAT 60.153 57.895 9.42 0.00 45.17 1.73
1865 2214 1.081840 GTTTTCTGGCAGAGCGCAC 60.082 57.895 17.91 2.25 45.17 5.34
2080 2429 1.180456 TGGCAAGCCACCACATCTTG 61.180 55.000 10.24 0.00 41.89 3.02
2210 2559 8.801882 TTAGTATTTTTCTCATTCCGTCCAAT 57.198 30.769 0.00 0.00 0.00 3.16
2359 2708 1.858458 CCCGCACGTGTGATATACTTG 59.142 52.381 29.80 10.42 0.00 3.16
2637 2986 0.536006 ACTTGTGAGAGCTGGGTTGC 60.536 55.000 0.00 0.00 0.00 4.17
2711 3060 6.716934 AGAGTTAAGATTCGGAGATGCTTA 57.283 37.500 0.00 0.00 35.04 3.09
2724 3073 9.454859 CCTAGTTGGAAATTCAAGAGTTAAGAT 57.545 33.333 0.00 0.00 38.35 2.40
2726 3075 7.391833 AGCCTAGTTGGAAATTCAAGAGTTAAG 59.608 37.037 0.00 0.00 38.35 1.85
2791 3140 5.993441 GCTACAACTTTTAGGTACCTCAACA 59.007 40.000 20.32 0.00 0.00 3.33
2851 3200 3.380004 CGTCTCTAATTGCTCCAGTCTCT 59.620 47.826 0.00 0.00 0.00 3.10
2901 3250 6.375455 ACAATATCTGATGGAACTTGAACCAC 59.625 38.462 0.00 0.00 39.06 4.16
2938 3287 3.055094 AGGAACGATCAGGTGCAATAACT 60.055 43.478 0.00 0.00 0.00 2.24
2963 3312 2.224305 CCTAGAGGGCAAACTTATCCCG 60.224 54.545 0.00 0.00 44.70 5.14
2987 3336 1.746861 CGTAGGGATTTCATGCTGCCA 60.747 52.381 0.00 0.00 0.00 4.92
3032 3381 8.370940 TCTCTGATGTTTTCTACTGAGTTCATT 58.629 33.333 0.00 0.00 32.78 2.57
3067 3416 2.569404 AGGTCCTTCAGATTGGTCAGAC 59.431 50.000 0.00 0.00 0.00 3.51
3126 3475 5.772825 TTCATAAGTTTTGCTGCTTCTGT 57.227 34.783 0.00 0.00 0.00 3.41
3153 3502 7.040409 GCAAAGTTTTTCTAGGGAGAATCTCAA 60.040 37.037 12.79 0.00 38.91 3.02
3272 3621 0.402504 TGCAACCCCGTAAATGGAGT 59.597 50.000 0.00 0.00 0.00 3.85
3309 3658 2.996249 TGGAGCTCATGAATCCACTC 57.004 50.000 20.39 11.30 38.19 3.51
3363 3712 2.794103 TCCAACACCATCATCCAACAG 58.206 47.619 0.00 0.00 0.00 3.16
3376 3725 3.648339 ACTGTGCAATGATTCCAACAC 57.352 42.857 0.00 0.00 0.00 3.32
3417 3766 6.824305 AGGAGTTCCAAAGATGTACAAATG 57.176 37.500 0.00 0.00 38.89 2.32
3592 3943 1.727467 GACAAAAGCAGCACCGTGT 59.273 52.632 0.00 0.00 0.00 4.49
3646 3997 1.438651 CATATCCCCCAATGCGTACG 58.561 55.000 11.84 11.84 0.00 3.67
3667 4018 2.956964 GCACTCGATTCCTCGGCG 60.957 66.667 0.00 0.00 45.10 6.46
3700 4051 1.685803 CCAATGGCATCCCTAAGCACA 60.686 52.381 0.00 0.00 0.00 4.57
3724 4075 1.207329 GCTCTAGGACAATTCGGGTGT 59.793 52.381 0.00 0.00 0.00 4.16
3732 4083 6.070538 ACACTTGATGTTAGCTCTAGGACAAT 60.071 38.462 0.00 0.00 38.98 2.71
3741 4092 3.575630 TCGTCACACTTGATGTTAGCTC 58.424 45.455 0.00 0.00 40.64 4.09
3771 4122 8.286097 CCTTCTTCTAGTCATCAAAAGTGAAAC 58.714 37.037 0.00 0.00 37.30 2.78
3789 4140 2.903135 CTCACAACCTCCTCCTTCTTCT 59.097 50.000 0.00 0.00 0.00 2.85
3790 4141 2.614229 GCTCACAACCTCCTCCTTCTTC 60.614 54.545 0.00 0.00 0.00 2.87
3793 4144 0.980423 AGCTCACAACCTCCTCCTTC 59.020 55.000 0.00 0.00 0.00 3.46
3881 4240 9.922305 GATTATTAAAAATCAACGAGAGAGTGG 57.078 33.333 0.00 0.00 36.16 4.00
3920 4279 5.995565 AAAACTTGTAGGGAATAAAGGGC 57.004 39.130 0.00 0.00 0.00 5.19
3934 4293 5.009610 AGGCATGACACGAAATAAAACTTGT 59.990 36.000 0.00 0.00 0.00 3.16
4085 4480 3.055963 AGAGTTCATCAGTCCAGCTTGAG 60.056 47.826 0.00 0.00 0.00 3.02
4110 4570 1.065418 CCGCCTTCCACATTTCCTAGT 60.065 52.381 0.00 0.00 0.00 2.57
4114 4574 2.052104 CCCCGCCTTCCACATTTCC 61.052 63.158 0.00 0.00 0.00 3.13
4134 4594 2.026641 TGTACCGGTGTATACAGAGCC 58.973 52.381 19.93 3.30 0.00 4.70
4135 4595 3.568853 AGATGTACCGGTGTATACAGAGC 59.431 47.826 19.93 7.32 34.88 4.09
4146 4612 1.133790 GAAGCACGTAGATGTACCGGT 59.866 52.381 13.98 13.98 0.00 5.28
4148 4614 2.554806 TGAAGCACGTAGATGTACCG 57.445 50.000 0.00 0.00 0.00 4.02
4174 4640 1.636148 ATGGTGGCAGCACAATCTTT 58.364 45.000 23.12 0.48 0.00 2.52
4229 4695 0.865769 GGAACAGTGCGTACAACAGG 59.134 55.000 6.38 0.00 0.00 4.00
4307 5442 7.793888 CCAATTCATCGTTCGATTATACACAAG 59.206 37.037 4.92 0.00 0.00 3.16
4350 5485 6.031417 CAGCTGAACGTTTCGAAATTTCATAC 59.969 38.462 25.82 21.96 0.00 2.39
4352 5487 4.911610 CAGCTGAACGTTTCGAAATTTCAT 59.088 37.500 25.82 16.12 0.00 2.57
4367 5502 8.883731 ACACTGATTTACATATAACAGCTGAAC 58.116 33.333 23.35 0.00 0.00 3.18
4422 5563 0.736053 AGAAGCCGAGTGAGATCGAC 59.264 55.000 0.00 0.00 45.56 4.20
4424 5565 1.535015 GGAAGAAGCCGAGTGAGATCG 60.535 57.143 0.00 0.00 42.36 3.69
4429 5570 0.173481 CGATGGAAGAAGCCGAGTGA 59.827 55.000 0.00 0.00 0.00 3.41
4431 5572 1.067821 GATCGATGGAAGAAGCCGAGT 59.932 52.381 0.54 0.00 32.60 4.18
4432 5573 1.067669 TGATCGATGGAAGAAGCCGAG 59.932 52.381 0.54 0.00 32.60 4.63
4446 5587 3.867493 GTGAAATCTGCACATCTGATCGA 59.133 43.478 0.00 0.00 36.31 3.59
4473 5614 7.014134 TCAGATGTTGCAAAGACTAAAATGGAA 59.986 33.333 0.00 0.00 0.00 3.53
4728 5902 1.626356 ATGGCACTGTCACCGCCTAT 61.626 55.000 8.16 0.00 46.39 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.