Multiple sequence alignment - TraesCS6D01G051700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G051700 chr6D 100.000 4334 0 0 1 4334 24581560 24577227 0.000000e+00 8004.0
1 TraesCS6D01G051700 chr6D 80.104 1538 183 62 2098 3577 24593255 24591783 0.000000e+00 1031.0
2 TraesCS6D01G051700 chr6D 77.415 766 121 33 875 1623 24595723 24594993 4.030000e-110 409.0
3 TraesCS6D01G051700 chr6D 91.228 114 10 0 31 144 113170899 113170786 5.800000e-34 156.0
4 TraesCS6D01G051700 chr6A 93.636 1807 74 19 2537 4319 23403231 23405020 0.000000e+00 2662.0
5 TraesCS6D01G051700 chr6A 93.089 926 54 3 781 1706 23399806 23400721 0.000000e+00 1347.0
6 TraesCS6D01G051700 chr6A 84.783 690 62 21 2915 3577 23390652 23391325 0.000000e+00 652.0
7 TraesCS6D01G051700 chr6A 83.082 331 51 4 2161 2486 23402727 23403057 3.280000e-76 296.0
8 TraesCS6D01G051700 chr6A 81.040 327 42 14 1738 2044 23402323 23402649 4.330000e-60 243.0
9 TraesCS6D01G051700 chr6A 85.185 216 12 10 162 370 23399613 23399815 2.040000e-48 204.0
10 TraesCS6D01G051700 chr6A 93.056 72 2 3 302 370 23388561 23388632 7.670000e-18 102.0
11 TraesCS6D01G051700 chr6A 100.000 29 0 0 2503 2531 23403208 23403236 2.000000e-03 54.7
12 TraesCS6D01G051700 chrUn 92.480 758 40 6 781 1535 346761953 346761210 0.000000e+00 1068.0
13 TraesCS6D01G051700 chrUn 91.808 647 34 12 2909 3540 346827037 346827679 0.000000e+00 883.0
14 TraesCS6D01G051700 chrUn 91.652 551 22 7 1564 2097 346761208 346760665 0.000000e+00 741.0
15 TraesCS6D01G051700 chrUn 83.738 701 86 18 2233 2919 469884695 469884009 4.730000e-179 638.0
16 TraesCS6D01G051700 chrUn 94.253 174 10 0 162 335 346762126 346761953 2.570000e-67 267.0
17 TraesCS6D01G051700 chr1A 92.439 410 23 6 374 781 65808141 65807738 2.910000e-161 579.0
18 TraesCS6D01G051700 chr1A 79.630 108 19 3 4194 4300 324372637 324372742 1.670000e-09 75.0
19 TraesCS6D01G051700 chr7A 91.546 414 30 4 370 781 543430034 543430444 2.260000e-157 566.0
20 TraesCS6D01G051700 chr7B 88.671 459 43 7 359 810 716701037 716701493 6.330000e-153 551.0
21 TraesCS6D01G051700 chr7B 88.671 459 42 8 358 810 716976180 716975726 6.330000e-153 551.0
22 TraesCS6D01G051700 chr6B 80.206 778 116 23 837 1595 40433513 40432755 2.280000e-152 549.0
23 TraesCS6D01G051700 chr6B 92.264 349 19 3 3235 3577 40431307 40430961 5.040000e-134 488.0
24 TraesCS6D01G051700 chr6B 76.071 677 67 38 2548 3177 40431948 40431320 9.240000e-67 265.0
25 TraesCS6D01G051700 chr5A 91.041 413 28 6 373 782 641587840 641587434 2.280000e-152 549.0
26 TraesCS6D01G051700 chr5A 89.320 412 35 7 373 781 509997937 509998342 3.870000e-140 508.0
27 TraesCS6D01G051700 chr5A 91.228 114 10 0 31 144 177273190 177273077 5.800000e-34 156.0
28 TraesCS6D01G051700 chr5A 85.135 74 4 7 4246 4318 678210065 678209998 7.780000e-08 69.4
29 TraesCS6D01G051700 chr3A 90.120 415 32 7 369 781 681099448 681099041 8.250000e-147 531.0
30 TraesCS6D01G051700 chr3A 81.609 87 15 1 4214 4300 12252554 12252469 2.160000e-08 71.3
31 TraesCS6D01G051700 chr3A 84.722 72 5 6 4247 4318 366853147 366853212 2.800000e-07 67.6
32 TraesCS6D01G051700 chr3A 100.000 29 0 0 133 161 692050804 692050832 2.000000e-03 54.7
33 TraesCS6D01G051700 chr3D 90.244 410 32 5 374 781 454744149 454744552 2.970000e-146 529.0
34 TraesCS6D01G051700 chr2A 89.639 415 32 8 373 784 114864793 114865199 6.420000e-143 518.0
35 TraesCS6D01G051700 chr2A 79.365 126 19 7 4193 4317 752550918 752551037 9.990000e-12 82.4
36 TraesCS6D01G051700 chr5D 90.598 117 11 0 31 147 253937157 253937041 5.800000e-34 156.0
37 TraesCS6D01G051700 chr5D 89.552 67 6 1 4225 4291 459732643 459732578 2.780000e-12 84.2
38 TraesCS6D01G051700 chr2D 91.228 114 10 0 31 144 342655840 342655727 5.800000e-34 156.0
39 TraesCS6D01G051700 chr1B 90.598 117 11 0 28 144 270193175 270193291 5.800000e-34 156.0
40 TraesCS6D01G051700 chr4D 90.351 114 11 0 31 144 87090199 87090086 2.700000e-32 150.0
41 TraesCS6D01G051700 chr4D 89.744 117 12 0 28 144 350941517 350941633 2.700000e-32 150.0
42 TraesCS6D01G051700 chr4D 90.351 114 11 0 31 144 448741933 448741820 2.700000e-32 150.0
43 TraesCS6D01G051700 chr4D 91.071 56 5 0 2000 2055 475115651 475115596 4.650000e-10 76.8
44 TraesCS6D01G051700 chr4D 100.000 28 0 0 144 171 405653411 405653384 8.000000e-03 52.8
45 TraesCS6D01G051700 chr1D 89.744 117 12 0 28 144 275755754 275755870 2.700000e-32 150.0
46 TraesCS6D01G051700 chr3B 88.158 76 8 1 4214 4289 777193151 777193225 5.970000e-14 89.8
47 TraesCS6D01G051700 chr3B 82.692 104 13 5 4214 4317 20553398 20553300 2.150000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G051700 chr6D 24577227 24581560 4333 True 8004.000000 8004 100.000000 1 4334 1 chr6D.!!$R1 4333
1 TraesCS6D01G051700 chr6D 24591783 24595723 3940 True 720.000000 1031 78.759500 875 3577 2 chr6D.!!$R3 2702
2 TraesCS6D01G051700 chr6A 23399613 23405020 5407 False 801.116667 2662 89.338667 162 4319 6 chr6A.!!$F2 4157
3 TraesCS6D01G051700 chr6A 23388561 23391325 2764 False 377.000000 652 88.919500 302 3577 2 chr6A.!!$F1 3275
4 TraesCS6D01G051700 chrUn 346827037 346827679 642 False 883.000000 883 91.808000 2909 3540 1 chrUn.!!$F1 631
5 TraesCS6D01G051700 chrUn 346760665 346762126 1461 True 692.000000 1068 92.795000 162 2097 3 chrUn.!!$R2 1935
6 TraesCS6D01G051700 chrUn 469884009 469884695 686 True 638.000000 638 83.738000 2233 2919 1 chrUn.!!$R1 686
7 TraesCS6D01G051700 chr6B 40430961 40433513 2552 True 434.000000 549 82.847000 837 3577 3 chr6B.!!$R1 2740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
396 406 0.544697 ACACTTCGGTTCCTGGTTGT 59.455 50.0 0.00 0.00 0.00 3.32 F
1994 3968 0.403271 ATAGATGGTGCCCATGAGCC 59.597 55.0 10.99 0.00 45.26 4.70 F
2112 5089 0.466189 ATTCGTCATCCATGGGCCAC 60.466 55.0 9.28 4.88 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2112 5089 0.385390 GTGAAGTGGTGCCCAAACTG 59.615 55.0 0.0 0.0 34.18 3.16 R
2803 6289 1.389609 TATCCGCTCCACCGTCTTCC 61.390 60.0 0.0 0.0 0.00 3.46 R
4008 7536 1.588674 TGGTACACTTGGCTTCGTTG 58.411 50.0 0.0 0.0 0.00 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.256445 CGAATCCCAAAAATTCGCGT 57.744 45.000 5.77 0.00 46.01 6.01
23 24 2.173964 CGAATCCCAAAAATTCGCGTC 58.826 47.619 5.77 0.00 46.01 5.19
24 25 2.526077 GAATCCCAAAAATTCGCGTCC 58.474 47.619 5.77 0.00 0.00 4.79
25 26 1.540267 ATCCCAAAAATTCGCGTCCA 58.460 45.000 5.77 0.00 0.00 4.02
26 27 1.540267 TCCCAAAAATTCGCGTCCAT 58.460 45.000 5.77 0.00 0.00 3.41
27 28 1.889829 TCCCAAAAATTCGCGTCCATT 59.110 42.857 5.77 0.13 0.00 3.16
28 29 3.082548 TCCCAAAAATTCGCGTCCATTA 58.917 40.909 5.77 0.00 0.00 1.90
29 30 3.697045 TCCCAAAAATTCGCGTCCATTAT 59.303 39.130 5.77 0.00 0.00 1.28
30 31 4.158764 TCCCAAAAATTCGCGTCCATTATT 59.841 37.500 5.77 0.00 0.00 1.40
31 32 4.502645 CCCAAAAATTCGCGTCCATTATTC 59.497 41.667 5.77 0.00 0.00 1.75
32 33 5.339990 CCAAAAATTCGCGTCCATTATTCT 58.660 37.500 5.77 0.00 0.00 2.40
33 34 5.804979 CCAAAAATTCGCGTCCATTATTCTT 59.195 36.000 5.77 0.00 0.00 2.52
34 35 6.970043 CCAAAAATTCGCGTCCATTATTCTTA 59.030 34.615 5.77 0.00 0.00 2.10
35 36 7.647715 CCAAAAATTCGCGTCCATTATTCTTAT 59.352 33.333 5.77 0.00 0.00 1.73
36 37 9.658475 CAAAAATTCGCGTCCATTATTCTTATA 57.342 29.630 5.77 0.00 0.00 0.98
37 38 9.878599 AAAAATTCGCGTCCATTATTCTTATAG 57.121 29.630 5.77 0.00 0.00 1.31
38 39 6.648725 ATTCGCGTCCATTATTCTTATAGC 57.351 37.500 5.77 0.00 0.00 2.97
39 40 5.386958 TCGCGTCCATTATTCTTATAGCT 57.613 39.130 5.77 0.00 0.00 3.32
40 41 6.505044 TCGCGTCCATTATTCTTATAGCTA 57.495 37.500 5.77 0.00 0.00 3.32
41 42 6.916440 TCGCGTCCATTATTCTTATAGCTAA 58.084 36.000 5.77 0.00 0.00 3.09
42 43 6.805271 TCGCGTCCATTATTCTTATAGCTAAC 59.195 38.462 5.77 0.00 0.00 2.34
43 44 6.034683 CGCGTCCATTATTCTTATAGCTAACC 59.965 42.308 0.00 0.00 0.00 2.85
44 45 7.097834 GCGTCCATTATTCTTATAGCTAACCT 58.902 38.462 0.00 0.00 0.00 3.50
45 46 7.603024 GCGTCCATTATTCTTATAGCTAACCTT 59.397 37.037 0.00 0.00 0.00 3.50
74 75 9.877178 AGCTAACATTATTATATGAGTGGCTAC 57.123 33.333 0.00 0.00 33.14 3.58
75 76 9.653287 GCTAACATTATTATATGAGTGGCTACA 57.347 33.333 2.02 0.00 0.00 2.74
79 80 9.494271 ACATTATTATATGAGTGGCTACAAGTG 57.506 33.333 2.02 0.00 0.00 3.16
80 81 9.710900 CATTATTATATGAGTGGCTACAAGTGA 57.289 33.333 2.02 0.00 0.00 3.41
84 85 9.712305 ATTATATGAGTGGCTACAAGTGATAAC 57.288 33.333 2.02 0.00 0.00 1.89
85 86 5.683876 ATGAGTGGCTACAAGTGATAACT 57.316 39.130 2.02 0.00 0.00 2.24
86 87 6.791867 ATGAGTGGCTACAAGTGATAACTA 57.208 37.500 2.02 0.00 0.00 2.24
87 88 6.791867 TGAGTGGCTACAAGTGATAACTAT 57.208 37.500 2.02 0.00 0.00 2.12
88 89 7.891498 TGAGTGGCTACAAGTGATAACTATA 57.109 36.000 2.02 0.00 0.00 1.31
89 90 8.478775 TGAGTGGCTACAAGTGATAACTATAT 57.521 34.615 2.02 0.00 0.00 0.86
90 91 9.582648 TGAGTGGCTACAAGTGATAACTATATA 57.417 33.333 2.02 0.00 0.00 0.86
99 100 9.658799 ACAAGTGATAACTATATATGACATGGC 57.341 33.333 0.00 0.00 27.23 4.40
100 101 9.657419 CAAGTGATAACTATATATGACATGGCA 57.343 33.333 2.18 2.18 0.00 4.92
102 103 9.658799 AGTGATAACTATATATGACATGGCAAC 57.341 33.333 4.70 0.00 0.00 4.17
119 120 5.909621 GGCAACATCATATAGCCATCAAT 57.090 39.130 0.00 0.00 44.59 2.57
120 121 6.276832 GGCAACATCATATAGCCATCAATT 57.723 37.500 0.00 0.00 44.59 2.32
121 122 7.395190 GGCAACATCATATAGCCATCAATTA 57.605 36.000 0.00 0.00 44.59 1.40
122 123 7.478322 GGCAACATCATATAGCCATCAATTAG 58.522 38.462 0.00 0.00 44.59 1.73
123 124 6.971184 GCAACATCATATAGCCATCAATTAGC 59.029 38.462 0.00 0.00 0.00 3.09
124 125 7.148120 GCAACATCATATAGCCATCAATTAGCT 60.148 37.037 0.00 0.00 40.66 3.32
125 126 9.387257 CAACATCATATAGCCATCAATTAGCTA 57.613 33.333 0.00 0.00 42.88 3.32
150 151 6.877611 ATTATTAACCATGCTCTAAACCGG 57.122 37.500 0.00 0.00 0.00 5.28
151 152 3.985019 TTAACCATGCTCTAAACCGGA 57.015 42.857 9.46 0.00 0.00 5.14
152 153 2.871096 AACCATGCTCTAAACCGGAA 57.129 45.000 9.46 0.00 0.00 4.30
153 154 2.871096 ACCATGCTCTAAACCGGAAA 57.129 45.000 9.46 0.00 0.00 3.13
154 155 2.711542 ACCATGCTCTAAACCGGAAAG 58.288 47.619 9.46 1.70 0.00 2.62
156 157 2.355716 CCATGCTCTAAACCGGAAAGGA 60.356 50.000 9.46 0.00 45.00 3.36
157 158 2.762535 TGCTCTAAACCGGAAAGGAG 57.237 50.000 9.46 11.44 45.00 3.69
158 159 1.278127 TGCTCTAAACCGGAAAGGAGG 59.722 52.381 9.46 0.00 45.00 4.30
159 160 1.407025 GCTCTAAACCGGAAAGGAGGG 60.407 57.143 9.46 0.00 45.00 4.30
160 161 2.185387 CTCTAAACCGGAAAGGAGGGA 58.815 52.381 9.46 0.00 45.00 4.20
202 203 9.184523 CCCACAATCTGGAAACAATATTAACTA 57.815 33.333 0.00 0.00 43.95 2.24
311 318 3.705072 ACAACCACTAGTACTATCCAGCC 59.295 47.826 2.33 0.00 0.00 4.85
360 370 2.996631 AGCTCAACCAATCCATGTCTC 58.003 47.619 0.00 0.00 0.00 3.36
361 371 2.019984 GCTCAACCAATCCATGTCTCC 58.980 52.381 0.00 0.00 0.00 3.71
362 372 2.356535 GCTCAACCAATCCATGTCTCCT 60.357 50.000 0.00 0.00 0.00 3.69
363 373 3.875369 GCTCAACCAATCCATGTCTCCTT 60.875 47.826 0.00 0.00 0.00 3.36
364 374 4.338879 CTCAACCAATCCATGTCTCCTTT 58.661 43.478 0.00 0.00 0.00 3.11
365 375 4.335416 TCAACCAATCCATGTCTCCTTTC 58.665 43.478 0.00 0.00 0.00 2.62
366 376 4.043310 TCAACCAATCCATGTCTCCTTTCT 59.957 41.667 0.00 0.00 0.00 2.52
367 377 4.227864 ACCAATCCATGTCTCCTTTCTC 57.772 45.455 0.00 0.00 0.00 2.87
368 378 3.054065 ACCAATCCATGTCTCCTTTCTCC 60.054 47.826 0.00 0.00 0.00 3.71
369 379 3.201290 CAATCCATGTCTCCTTTCTCCG 58.799 50.000 0.00 0.00 0.00 4.63
370 380 1.195115 TCCATGTCTCCTTTCTCCGG 58.805 55.000 0.00 0.00 0.00 5.14
371 381 0.905357 CCATGTCTCCTTTCTCCGGT 59.095 55.000 0.00 0.00 0.00 5.28
372 382 1.406069 CCATGTCTCCTTTCTCCGGTG 60.406 57.143 0.00 0.00 0.00 4.94
373 383 1.550524 CATGTCTCCTTTCTCCGGTGA 59.449 52.381 0.00 0.06 0.00 4.02
374 384 1.712056 TGTCTCCTTTCTCCGGTGAA 58.288 50.000 14.78 14.78 0.00 3.18
375 385 2.043992 TGTCTCCTTTCTCCGGTGAAA 58.956 47.619 25.57 25.57 35.07 2.69
376 386 2.637872 TGTCTCCTTTCTCCGGTGAAAT 59.362 45.455 26.93 0.00 35.68 2.17
377 387 3.835978 TGTCTCCTTTCTCCGGTGAAATA 59.164 43.478 26.93 18.47 35.68 1.40
378 388 4.182339 GTCTCCTTTCTCCGGTGAAATAC 58.818 47.826 26.93 19.14 35.68 1.89
379 389 3.835978 TCTCCTTTCTCCGGTGAAATACA 59.164 43.478 26.93 15.10 35.68 2.29
386 396 1.619827 TCCGGTGAAATACACTTCGGT 59.380 47.619 0.00 0.00 46.54 4.69
387 397 2.037511 TCCGGTGAAATACACTTCGGTT 59.962 45.455 0.00 0.00 46.54 4.44
388 398 3.861886 TCCGGTGAAATACACTTCGGTTC 60.862 47.826 0.00 0.00 46.54 3.62
389 399 6.883135 TCCGGTGAAATACACTTCGGTTCC 62.883 50.000 0.00 0.00 46.54 3.62
391 401 4.663636 GTGAAATACACTTCGGTTCCTG 57.336 45.455 0.00 0.00 45.13 3.86
392 402 3.435671 GTGAAATACACTTCGGTTCCTGG 59.564 47.826 0.00 0.00 45.13 4.45
393 403 3.071892 TGAAATACACTTCGGTTCCTGGT 59.928 43.478 0.00 0.00 0.00 4.00
394 404 3.782656 AATACACTTCGGTTCCTGGTT 57.217 42.857 0.00 0.00 0.00 3.67
395 405 2.536761 TACACTTCGGTTCCTGGTTG 57.463 50.000 0.00 0.00 0.00 3.77
396 406 0.544697 ACACTTCGGTTCCTGGTTGT 59.455 50.000 0.00 0.00 0.00 3.32
397 407 1.764134 ACACTTCGGTTCCTGGTTGTA 59.236 47.619 0.00 0.00 0.00 2.41
398 408 2.370849 ACACTTCGGTTCCTGGTTGTAT 59.629 45.455 0.00 0.00 0.00 2.29
399 409 3.579586 ACACTTCGGTTCCTGGTTGTATA 59.420 43.478 0.00 0.00 0.00 1.47
400 410 4.224370 ACACTTCGGTTCCTGGTTGTATAT 59.776 41.667 0.00 0.00 0.00 0.86
401 411 5.422970 ACACTTCGGTTCCTGGTTGTATATA 59.577 40.000 0.00 0.00 0.00 0.86
402 412 5.751990 CACTTCGGTTCCTGGTTGTATATAC 59.248 44.000 5.89 5.89 0.00 1.47
403 413 5.422970 ACTTCGGTTCCTGGTTGTATATACA 59.577 40.000 11.62 11.62 0.00 2.29
404 414 5.266733 TCGGTTCCTGGTTGTATATACAC 57.733 43.478 15.20 10.24 35.64 2.90
405 415 4.957954 TCGGTTCCTGGTTGTATATACACT 59.042 41.667 15.20 0.00 35.64 3.55
406 416 5.068198 TCGGTTCCTGGTTGTATATACACTC 59.932 44.000 15.20 11.01 35.64 3.51
407 417 5.068723 CGGTTCCTGGTTGTATATACACTCT 59.931 44.000 15.20 0.00 35.64 3.24
408 418 6.263842 CGGTTCCTGGTTGTATATACACTCTA 59.736 42.308 15.20 8.65 35.64 2.43
409 419 7.039923 CGGTTCCTGGTTGTATATACACTCTAT 60.040 40.741 15.20 0.00 35.64 1.98
410 420 9.305555 GGTTCCTGGTTGTATATACACTCTATA 57.694 37.037 15.20 0.00 35.64 1.31
413 423 9.475620 TCCTGGTTGTATATACACTCTATATGG 57.524 37.037 15.20 9.45 35.64 2.74
414 424 9.475620 CCTGGTTGTATATACACTCTATATGGA 57.524 37.037 15.20 0.00 35.64 3.41
493 503 8.965986 AGAACAAACTTGACTTACTTTTTCAC 57.034 30.769 0.00 0.00 0.00 3.18
494 504 8.793592 AGAACAAACTTGACTTACTTTTTCACT 58.206 29.630 0.00 0.00 0.00 3.41
497 507 9.227777 ACAAACTTGACTTACTTTTTCACTAGT 57.772 29.630 0.00 0.00 0.00 2.57
513 523 9.491675 TTTTCACTAGTATGTAAATTTCCACGA 57.508 29.630 0.00 0.00 0.00 4.35
514 524 9.491675 TTTCACTAGTATGTAAATTTCCACGAA 57.508 29.630 0.00 0.00 0.00 3.85
515 525 9.491675 TTCACTAGTATGTAAATTTCCACGAAA 57.508 29.630 0.00 0.00 35.94 3.46
516 526 9.661563 TCACTAGTATGTAAATTTCCACGAAAT 57.338 29.630 0.00 0.00 43.07 2.17
533 543 9.967346 TCCACGAAATAAAAATCAATGTTAACA 57.033 25.926 11.41 11.41 0.00 2.41
547 557 8.854979 TCAATGTTAACATCACAGTGAAAAAG 57.145 30.769 21.02 0.91 44.06 2.27
548 558 8.681806 TCAATGTTAACATCACAGTGAAAAAGA 58.318 29.630 21.02 0.00 44.06 2.52
549 559 8.745837 CAATGTTAACATCACAGTGAAAAAGAC 58.254 33.333 21.02 5.22 41.68 3.01
550 560 7.384439 TGTTAACATCACAGTGAAAAAGACA 57.616 32.000 7.50 7.70 0.00 3.41
551 561 7.821652 TGTTAACATCACAGTGAAAAAGACAA 58.178 30.769 7.50 0.00 0.00 3.18
552 562 8.465999 TGTTAACATCACAGTGAAAAAGACAAT 58.534 29.630 7.50 0.00 0.00 2.71
553 563 9.301153 GTTAACATCACAGTGAAAAAGACAATT 57.699 29.630 7.50 0.00 0.00 2.32
554 564 9.868277 TTAACATCACAGTGAAAAAGACAATTT 57.132 25.926 7.50 0.00 0.00 1.82
581 591 9.860650 ATTTGTTATTATAGGCCACTATTCACA 57.139 29.630 5.01 0.00 40.35 3.58
582 592 8.671384 TTGTTATTATAGGCCACTATTCACAC 57.329 34.615 5.01 0.00 40.35 3.82
583 593 8.029782 TGTTATTATAGGCCACTATTCACACT 57.970 34.615 5.01 0.00 40.35 3.55
584 594 9.150028 TGTTATTATAGGCCACTATTCACACTA 57.850 33.333 5.01 0.00 40.35 2.74
589 599 7.807977 ATAGGCCACTATTCACACTATTTTG 57.192 36.000 5.01 0.00 36.51 2.44
590 600 4.949856 AGGCCACTATTCACACTATTTTGG 59.050 41.667 5.01 0.00 0.00 3.28
591 601 4.440112 GGCCACTATTCACACTATTTTGGC 60.440 45.833 0.00 0.00 45.17 4.52
592 602 4.440112 GCCACTATTCACACTATTTTGGCC 60.440 45.833 0.00 0.00 40.97 5.36
593 603 4.704540 CCACTATTCACACTATTTTGGCCA 59.295 41.667 0.00 0.00 0.00 5.36
594 604 5.184864 CCACTATTCACACTATTTTGGCCAA 59.815 40.000 16.05 16.05 0.00 4.52
595 605 6.295011 CCACTATTCACACTATTTTGGCCAAA 60.295 38.462 27.13 27.13 0.00 3.28
596 606 7.151308 CACTATTCACACTATTTTGGCCAAAA 58.849 34.615 38.39 38.39 43.48 2.44
598 608 8.374743 ACTATTCACACTATTTTGGCCAAAATT 58.625 29.630 44.95 32.25 45.67 1.82
599 609 9.218440 CTATTCACACTATTTTGGCCAAAATTT 57.782 29.630 44.95 33.55 45.67 1.82
600 610 7.872113 TTCACACTATTTTGGCCAAAATTTT 57.128 28.000 44.95 33.27 45.67 1.82
601 611 7.256756 TCACACTATTTTGGCCAAAATTTTG 57.743 32.000 44.95 39.49 45.67 2.44
602 612 6.825721 TCACACTATTTTGGCCAAAATTTTGT 59.174 30.769 44.95 39.97 45.67 2.83
603 613 7.011857 TCACACTATTTTGGCCAAAATTTTGTC 59.988 33.333 44.95 15.67 45.67 3.18
604 614 7.012232 CACACTATTTTGGCCAAAATTTTGTCT 59.988 33.333 44.95 29.77 45.67 3.41
605 615 7.555914 ACACTATTTTGGCCAAAATTTTGTCTT 59.444 29.630 44.95 29.33 45.67 3.01
606 616 8.404765 CACTATTTTGGCCAAAATTTTGTCTTT 58.595 29.630 44.95 28.74 45.67 2.52
607 617 8.965819 ACTATTTTGGCCAAAATTTTGTCTTTT 58.034 25.926 44.95 28.15 45.67 2.27
608 618 9.800433 CTATTTTGGCCAAAATTTTGTCTTTTT 57.200 25.926 44.95 27.73 45.67 1.94
629 639 7.439108 TTTTTGAAAATAAGTCAAAGGGGGA 57.561 32.000 0.00 0.00 43.76 4.81
630 640 7.625498 TTTTGAAAATAAGTCAAAGGGGGAT 57.375 32.000 0.47 0.00 43.76 3.85
631 641 7.625498 TTTGAAAATAAGTCAAAGGGGGATT 57.375 32.000 0.00 0.00 39.46 3.01
632 642 6.850752 TGAAAATAAGTCAAAGGGGGATTC 57.149 37.500 0.00 0.00 0.00 2.52
633 643 6.561294 TGAAAATAAGTCAAAGGGGGATTCT 58.439 36.000 0.00 0.00 0.00 2.40
634 644 7.016296 TGAAAATAAGTCAAAGGGGGATTCTT 58.984 34.615 0.00 0.00 0.00 2.52
635 645 7.512402 TGAAAATAAGTCAAAGGGGGATTCTTT 59.488 33.333 0.00 0.00 35.09 2.52
636 646 7.872061 AAATAAGTCAAAGGGGGATTCTTTT 57.128 32.000 0.00 0.00 32.72 2.27
637 647 7.872061 AATAAGTCAAAGGGGGATTCTTTTT 57.128 32.000 0.00 0.00 32.72 1.94
665 675 9.299963 TGTGAAAATTTTCTCACAAGTACAATG 57.700 29.630 26.73 0.00 46.74 2.82
666 676 9.301153 GTGAAAATTTTCTCACAAGTACAATGT 57.699 29.630 26.73 0.00 41.35 2.71
670 680 9.965824 AAATTTTCTCACAAGTACAATGTAAGG 57.034 29.630 0.00 0.00 0.00 2.69
671 681 8.691661 ATTTTCTCACAAGTACAATGTAAGGT 57.308 30.769 0.00 0.00 0.00 3.50
672 682 7.724305 TTTCTCACAAGTACAATGTAAGGTC 57.276 36.000 0.00 0.00 0.00 3.85
673 683 6.413783 TCTCACAAGTACAATGTAAGGTCA 57.586 37.500 0.00 0.00 0.00 4.02
674 684 6.822442 TCTCACAAGTACAATGTAAGGTCAA 58.178 36.000 0.00 0.00 0.00 3.18
675 685 6.929049 TCTCACAAGTACAATGTAAGGTCAAG 59.071 38.462 0.00 0.00 0.00 3.02
676 686 6.588204 TCACAAGTACAATGTAAGGTCAAGT 58.412 36.000 0.00 0.00 0.00 3.16
677 687 7.051623 TCACAAGTACAATGTAAGGTCAAGTT 58.948 34.615 0.00 0.00 0.00 2.66
678 688 7.554835 TCACAAGTACAATGTAAGGTCAAGTTT 59.445 33.333 0.00 0.00 0.00 2.66
679 689 8.832521 CACAAGTACAATGTAAGGTCAAGTTTA 58.167 33.333 0.00 0.00 0.00 2.01
680 690 9.569122 ACAAGTACAATGTAAGGTCAAGTTTAT 57.431 29.630 0.00 0.00 0.00 1.40
758 768 7.504926 TTTCATATAGGGTGTATATGTCCCC 57.495 40.000 10.42 3.47 41.95 4.81
759 769 6.173676 TCATATAGGGTGTATATGTCCCCA 57.826 41.667 10.42 0.00 41.95 4.96
760 770 6.762571 TCATATAGGGTGTATATGTCCCCAT 58.237 40.000 10.42 3.97 41.95 4.00
761 771 7.899972 TCATATAGGGTGTATATGTCCCCATA 58.100 38.462 10.42 5.63 41.95 2.74
762 772 8.010697 TCATATAGGGTGTATATGTCCCCATAG 58.989 40.741 10.42 1.96 41.95 2.23
763 773 4.777877 AGGGTGTATATGTCCCCATAGA 57.222 45.455 7.81 0.00 41.95 1.98
764 774 4.426704 AGGGTGTATATGTCCCCATAGAC 58.573 47.826 7.81 1.57 43.13 2.59
765 775 3.518303 GGGTGTATATGTCCCCATAGACC 59.482 52.174 5.36 0.00 42.48 3.85
766 776 4.164981 GGTGTATATGTCCCCATAGACCA 58.835 47.826 5.36 0.00 42.48 4.02
767 777 4.595781 GGTGTATATGTCCCCATAGACCAA 59.404 45.833 5.36 0.00 42.48 3.67
768 778 5.072600 GGTGTATATGTCCCCATAGACCAAA 59.927 44.000 5.36 0.00 42.48 3.28
769 779 6.409925 GGTGTATATGTCCCCATAGACCAAAA 60.410 42.308 5.36 0.00 42.48 2.44
770 780 6.710744 GTGTATATGTCCCCATAGACCAAAAG 59.289 42.308 5.36 0.00 42.48 2.27
771 781 5.994416 ATATGTCCCCATAGACCAAAAGT 57.006 39.130 0.00 0.00 36.99 2.66
772 782 4.675063 ATGTCCCCATAGACCAAAAGTT 57.325 40.909 0.00 0.00 35.83 2.66
773 783 4.028993 TGTCCCCATAGACCAAAAGTTC 57.971 45.455 0.00 0.00 35.83 3.01
774 784 3.245122 TGTCCCCATAGACCAAAAGTTCC 60.245 47.826 0.00 0.00 35.83 3.62
775 785 2.310647 TCCCCATAGACCAAAAGTTCCC 59.689 50.000 0.00 0.00 0.00 3.97
776 786 2.623239 CCCCATAGACCAAAAGTTCCCC 60.623 54.545 0.00 0.00 0.00 4.81
777 787 2.623239 CCCATAGACCAAAAGTTCCCCC 60.623 54.545 0.00 0.00 0.00 5.40
778 788 2.311841 CCATAGACCAAAAGTTCCCCCT 59.688 50.000 0.00 0.00 0.00 4.79
779 789 3.621558 CATAGACCAAAAGTTCCCCCTC 58.378 50.000 0.00 0.00 0.00 4.30
966 1003 1.744320 AACAAGTCCTTTTGCCGGCC 61.744 55.000 26.77 6.18 0.00 6.13
1008 1069 2.360726 TCAGCCACCATGCAGCAG 60.361 61.111 0.00 0.00 0.00 4.24
1020 1081 2.435586 CAGCAGTCCTCGCCCTTG 60.436 66.667 0.00 0.00 0.00 3.61
1031 1098 2.753446 GCCCTTGCTCTTGCTCCC 60.753 66.667 0.00 0.00 40.48 4.30
1038 1105 2.741055 GCTCTTGCTCCCCCTCCTC 61.741 68.421 0.00 0.00 36.03 3.71
1039 1106 2.041265 TCTTGCTCCCCCTCCTCC 59.959 66.667 0.00 0.00 0.00 4.30
1040 1107 2.041928 CTTGCTCCCCCTCCTCCT 59.958 66.667 0.00 0.00 0.00 3.69
1041 1108 2.041265 TTGCTCCCCCTCCTCCTC 59.959 66.667 0.00 0.00 0.00 3.71
1042 1109 3.984186 TTGCTCCCCCTCCTCCTCG 62.984 68.421 0.00 0.00 0.00 4.63
1133 1200 3.006728 CTACGGGGCCAACCTCCA 61.007 66.667 4.39 0.00 40.03 3.86
1427 1497 2.765699 GGTTCTCTGGCATCTCTTCTCT 59.234 50.000 0.00 0.00 0.00 3.10
1594 1672 2.290641 GGTTGTGGCAGCCGAATATTAG 59.709 50.000 7.03 0.00 0.00 1.73
1797 3510 5.321927 TCCCTTTAAAAACATGACTCCTCC 58.678 41.667 0.00 0.00 0.00 4.30
1815 3529 7.175797 ACTCCTCCGAGAATCCTAAAAATTTT 58.824 34.615 0.00 0.00 38.52 1.82
1906 3641 6.316390 GTGGAAGTCTTGTCTTTTCTTCTTCA 59.684 38.462 0.00 0.00 36.02 3.02
1963 3701 0.929824 CAAGTTTGCAGCCAACGACG 60.930 55.000 3.79 0.00 0.00 5.12
1994 3968 0.403271 ATAGATGGTGCCCATGAGCC 59.597 55.000 10.99 0.00 45.26 4.70
2100 5077 3.724374 AGAAAGTCGGTGAAATTCGTCA 58.276 40.909 0.00 0.00 0.00 4.35
2112 5089 0.466189 ATTCGTCATCCATGGGCCAC 60.466 55.000 9.28 4.88 0.00 5.01
2113 5090 1.846712 TTCGTCATCCATGGGCCACA 61.847 55.000 9.28 0.00 0.00 4.17
2136 5114 4.898607 GGCACCACTTCACCTGAA 57.101 55.556 0.00 0.00 0.00 3.02
2145 5128 3.181450 CCACTTCACCTGAACTCCTCTTT 60.181 47.826 0.00 0.00 0.00 2.52
2149 5132 2.037772 TCACCTGAACTCCTCTTTGCTC 59.962 50.000 0.00 0.00 0.00 4.26
2168 5151 1.409064 TCTCCTAGTAGCACAATGGCG 59.591 52.381 0.00 0.00 39.27 5.69
2276 5311 1.258676 AGAGGACCAGAGGACGAAAC 58.741 55.000 0.00 0.00 0.00 2.78
2296 5332 8.979574 ACGAAACAAAATATTGCCGAATTTTTA 58.020 25.926 0.00 0.00 40.34 1.52
2297 5333 9.965748 CGAAACAAAATATTGCCGAATTTTTAT 57.034 25.926 0.00 0.00 40.34 1.40
2337 5375 3.756727 GAGGTCGACGGGGGTGAC 61.757 72.222 9.92 0.00 0.00 3.67
2340 5378 2.260743 GTCGACGGGGGTGACTTC 59.739 66.667 0.00 0.00 0.00 3.01
2382 5420 3.911698 CGATCGGATGCGTCCCCA 61.912 66.667 19.51 6.55 41.83 4.96
2404 5719 2.174349 GTGTTGCACGCTGCTAGC 59.826 61.111 8.10 8.10 45.31 3.42
2410 5725 4.476410 CACGCTGCTAGCCGTCGA 62.476 66.667 22.21 1.41 38.18 4.20
2432 5751 2.225017 GGGAGAGAGAGGATGTAGGGAG 60.225 59.091 0.00 0.00 0.00 4.30
2474 5800 6.148811 TCAAATTTGAGTAGGTTCGAATGGTC 59.851 38.462 16.91 0.00 32.70 4.02
2476 5802 5.988310 TTTGAGTAGGTTCGAATGGTCTA 57.012 39.130 0.00 0.00 0.00 2.59
2587 6049 3.307199 GGAAACATCGTTCCAAGGGAGTA 60.307 47.826 0.00 0.00 45.57 2.59
2608 6070 4.826274 AAGATTGAACCGAGATGGAGAA 57.174 40.909 0.00 0.00 42.00 2.87
2624 6086 3.826157 TGGAGAACTTTACCTTGGCATTG 59.174 43.478 0.00 0.00 0.00 2.82
2625 6087 4.079253 GGAGAACTTTACCTTGGCATTGA 58.921 43.478 0.00 0.00 0.00 2.57
2680 6144 1.078709 CTTGCACACGTCGATCCAAT 58.921 50.000 0.00 0.00 0.00 3.16
2689 6153 1.017387 GTCGATCCAATGGACAAGGC 58.983 55.000 3.09 0.00 37.84 4.35
2722 6186 1.840635 GGGCCTTGTCCTAGACATTCT 59.159 52.381 0.84 0.00 42.40 2.40
2723 6187 2.239907 GGGCCTTGTCCTAGACATTCTT 59.760 50.000 0.84 0.00 42.40 2.52
2724 6188 3.308473 GGGCCTTGTCCTAGACATTCTTT 60.308 47.826 0.84 0.00 42.40 2.52
2725 6189 3.691609 GGCCTTGTCCTAGACATTCTTTG 59.308 47.826 0.00 0.00 42.40 2.77
2727 6191 4.565652 GCCTTGTCCTAGACATTCTTTGGA 60.566 45.833 0.00 0.00 42.40 3.53
2729 6193 6.183347 CCTTGTCCTAGACATTCTTTGGAAT 58.817 40.000 0.00 0.00 42.40 3.01
2730 6194 6.660949 CCTTGTCCTAGACATTCTTTGGAATT 59.339 38.462 0.00 0.00 42.40 2.17
2809 6295 2.365582 ACAAACCATATGGCGGAAGAC 58.634 47.619 22.18 0.00 39.32 3.01
2864 6350 4.807834 AGTGCGATGTGATCTACAATCTTG 59.192 41.667 0.00 0.00 43.77 3.02
3000 6508 5.048224 CCTTCTCCTAATGGCAATGCATTAG 60.048 44.000 12.53 20.37 39.70 1.73
3109 6617 7.977853 ACACTGATATTTCAAGCAATTGGATTC 59.022 33.333 7.72 0.00 0.00 2.52
3416 6929 1.352156 GGGCTCTACAACAACGCTCG 61.352 60.000 0.00 0.00 0.00 5.03
3713 7240 9.350357 CCATGACAGAGAATATTTCAAAAACAG 57.650 33.333 0.00 0.00 0.00 3.16
3730 7257 5.904362 AAACAGGGAAGTGATTTAGATGC 57.096 39.130 0.00 0.00 0.00 3.91
3741 7268 7.380423 AGTGATTTAGATGCTGGGTATAAGT 57.620 36.000 0.00 0.00 0.00 2.24
3743 7270 8.934697 AGTGATTTAGATGCTGGGTATAAGTTA 58.065 33.333 0.00 0.00 0.00 2.24
3772 7299 9.539825 TTTGTGTATAAGCATTTCACAACAAAT 57.460 25.926 8.23 0.00 44.71 2.32
3782 7309 9.410556 AGCATTTCACAACAAATCACTATTAAC 57.589 29.630 0.00 0.00 0.00 2.01
3810 7337 7.571080 TGGTTTGGGTTTTACTTAAGTACAG 57.429 36.000 14.96 0.00 0.00 2.74
4169 7700 8.106247 TCTATTTTTGTAGAAACGAATTGGCT 57.894 30.769 0.00 0.00 0.00 4.75
4171 7702 7.637709 ATTTTTGTAGAAACGAATTGGCTTC 57.362 32.000 0.00 0.00 0.00 3.86
4203 7734 7.916914 TGATAGGCTTAAAACTAAGGTTGTC 57.083 36.000 0.00 0.00 35.63 3.18
4204 7735 6.592607 TGATAGGCTTAAAACTAAGGTTGTCG 59.407 38.462 0.00 0.00 35.63 4.35
4243 7774 0.179020 TAGTACCATGCATGCCAGCC 60.179 55.000 21.69 6.57 0.00 4.85
4244 7775 2.516695 TACCATGCATGCCAGCCG 60.517 61.111 21.69 8.92 0.00 5.52
4257 7788 0.460635 CCAGCCGGGCAATTTTGATG 60.461 55.000 23.09 7.73 0.00 3.07
4264 7795 3.181397 CGGGCAATTTTGATGATGTGAC 58.819 45.455 0.00 0.00 0.00 3.67
4272 7803 9.309516 GCAATTTTGATGATGTGACATAGAATT 57.690 29.630 0.00 0.00 0.00 2.17
4300 7831 7.027874 TGAACAAAATAGAGGACTGGGTATT 57.972 36.000 0.00 0.00 0.00 1.89
4301 7832 7.110155 TGAACAAAATAGAGGACTGGGTATTC 58.890 38.462 0.00 0.00 0.00 1.75
4304 7835 8.568617 ACAAAATAGAGGACTGGGTATTCTAT 57.431 34.615 0.00 0.00 33.67 1.98
4319 7850 9.190317 TGGGTATTCTATAGTGCATGATACTAG 57.810 37.037 13.46 5.61 34.42 2.57
4320 7851 8.634444 GGGTATTCTATAGTGCATGATACTAGG 58.366 40.741 13.46 9.85 34.42 3.02
4321 7852 9.409918 GGTATTCTATAGTGCATGATACTAGGA 57.590 37.037 13.46 11.35 34.42 2.94
4323 7854 6.986904 TCTATAGTGCATGATACTAGGACG 57.013 41.667 13.46 0.00 34.42 4.79
4324 7855 2.802787 AGTGCATGATACTAGGACGC 57.197 50.000 0.00 0.00 0.00 5.19
4325 7856 1.001268 AGTGCATGATACTAGGACGCG 60.001 52.381 3.53 3.53 0.00 6.01
4326 7857 0.313987 TGCATGATACTAGGACGCGG 59.686 55.000 12.47 0.00 0.00 6.46
4327 7858 0.314302 GCATGATACTAGGACGCGGT 59.686 55.000 12.47 0.00 0.00 5.68
4328 7859 1.930817 GCATGATACTAGGACGCGGTG 60.931 57.143 12.47 0.00 0.00 4.94
4329 7860 1.337071 CATGATACTAGGACGCGGTGT 59.663 52.381 12.47 3.98 0.00 4.16
4330 7861 1.466856 TGATACTAGGACGCGGTGTT 58.533 50.000 12.47 0.00 0.00 3.32
4331 7862 1.820519 TGATACTAGGACGCGGTGTTT 59.179 47.619 12.47 0.00 0.00 2.83
4332 7863 2.231964 TGATACTAGGACGCGGTGTTTT 59.768 45.455 12.47 0.00 0.00 2.43
4333 7864 2.068837 TACTAGGACGCGGTGTTTTG 57.931 50.000 12.47 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.094957 TGGACGCGAATTTTTGGGATTC 60.095 45.455 15.93 0.00 0.00 2.52
5 6 1.889829 TGGACGCGAATTTTTGGGATT 59.110 42.857 15.93 0.00 0.00 3.01
6 7 1.540267 TGGACGCGAATTTTTGGGAT 58.460 45.000 15.93 0.00 0.00 3.85
7 8 1.540267 ATGGACGCGAATTTTTGGGA 58.460 45.000 15.93 0.00 0.00 4.37
8 9 2.362169 AATGGACGCGAATTTTTGGG 57.638 45.000 15.93 0.00 0.00 4.12
9 10 5.339990 AGAATAATGGACGCGAATTTTTGG 58.660 37.500 15.93 0.00 0.00 3.28
10 11 6.869421 AAGAATAATGGACGCGAATTTTTG 57.131 33.333 15.93 0.00 0.00 2.44
11 12 9.878599 CTATAAGAATAATGGACGCGAATTTTT 57.121 29.630 15.93 10.79 0.00 1.94
12 13 8.015658 GCTATAAGAATAATGGACGCGAATTTT 58.984 33.333 15.93 3.59 0.00 1.82
13 14 7.387948 AGCTATAAGAATAATGGACGCGAATTT 59.612 33.333 15.93 3.19 0.00 1.82
14 15 6.874134 AGCTATAAGAATAATGGACGCGAATT 59.126 34.615 15.93 12.22 0.00 2.17
15 16 6.398918 AGCTATAAGAATAATGGACGCGAAT 58.601 36.000 15.93 0.00 0.00 3.34
16 17 5.779922 AGCTATAAGAATAATGGACGCGAA 58.220 37.500 15.93 0.00 0.00 4.70
17 18 5.386958 AGCTATAAGAATAATGGACGCGA 57.613 39.130 15.93 0.00 0.00 5.87
18 19 6.034683 GGTTAGCTATAAGAATAATGGACGCG 59.965 42.308 3.53 3.53 0.00 6.01
19 20 7.097834 AGGTTAGCTATAAGAATAATGGACGC 58.902 38.462 0.00 0.00 0.00 5.19
48 49 9.877178 GTAGCCACTCATATAATAATGTTAGCT 57.123 33.333 0.00 0.00 0.00 3.32
49 50 9.653287 TGTAGCCACTCATATAATAATGTTAGC 57.347 33.333 0.00 0.00 0.00 3.09
53 54 9.494271 CACTTGTAGCCACTCATATAATAATGT 57.506 33.333 0.00 0.00 0.00 2.71
54 55 9.710900 TCACTTGTAGCCACTCATATAATAATG 57.289 33.333 0.00 0.00 0.00 1.90
58 59 9.712305 GTTATCACTTGTAGCCACTCATATAAT 57.288 33.333 0.00 0.00 0.00 1.28
59 60 8.924303 AGTTATCACTTGTAGCCACTCATATAA 58.076 33.333 0.00 0.00 0.00 0.98
60 61 8.478775 AGTTATCACTTGTAGCCACTCATATA 57.521 34.615 0.00 0.00 0.00 0.86
61 62 7.366847 AGTTATCACTTGTAGCCACTCATAT 57.633 36.000 0.00 0.00 0.00 1.78
62 63 6.791867 AGTTATCACTTGTAGCCACTCATA 57.208 37.500 0.00 0.00 0.00 2.15
63 64 5.683876 AGTTATCACTTGTAGCCACTCAT 57.316 39.130 0.00 0.00 0.00 2.90
64 65 6.791867 ATAGTTATCACTTGTAGCCACTCA 57.208 37.500 0.00 0.00 34.06 3.41
73 74 9.658799 GCCATGTCATATATAGTTATCACTTGT 57.341 33.333 0.00 0.00 34.06 3.16
74 75 9.657419 TGCCATGTCATATATAGTTATCACTTG 57.343 33.333 0.00 0.00 34.06 3.16
76 77 9.658799 GTTGCCATGTCATATATAGTTATCACT 57.341 33.333 0.00 0.00 36.99 3.41
77 78 9.435688 TGTTGCCATGTCATATATAGTTATCAC 57.564 33.333 0.00 0.00 0.00 3.06
86 87 9.281371 GCTATATGATGTTGCCATGTCATATAT 57.719 33.333 16.04 3.54 34.05 0.86
87 88 7.716560 GGCTATATGATGTTGCCATGTCATATA 59.283 37.037 9.49 15.35 42.79 0.86
88 89 6.544931 GGCTATATGATGTTGCCATGTCATAT 59.455 38.462 9.49 14.90 42.79 1.78
89 90 5.882000 GGCTATATGATGTTGCCATGTCATA 59.118 40.000 9.49 4.48 42.79 2.15
90 91 4.703575 GGCTATATGATGTTGCCATGTCAT 59.296 41.667 9.49 0.00 42.79 3.06
91 92 4.074259 GGCTATATGATGTTGCCATGTCA 58.926 43.478 9.49 0.00 42.79 3.58
92 93 4.691860 GGCTATATGATGTTGCCATGTC 57.308 45.455 9.49 0.00 42.79 3.06
97 98 5.909621 ATTGATGGCTATATGATGTTGCC 57.090 39.130 7.62 7.62 43.49 4.52
98 99 6.971184 GCTAATTGATGGCTATATGATGTTGC 59.029 38.462 0.00 0.00 0.00 4.17
99 100 8.277490 AGCTAATTGATGGCTATATGATGTTG 57.723 34.615 0.00 0.00 34.31 3.33
124 125 9.661563 CCGGTTTAGAGCATGGTTAATAATATA 57.338 33.333 0.00 0.00 0.00 0.86
125 126 8.380099 TCCGGTTTAGAGCATGGTTAATAATAT 58.620 33.333 0.00 0.00 0.00 1.28
126 127 7.737869 TCCGGTTTAGAGCATGGTTAATAATA 58.262 34.615 0.00 0.00 0.00 0.98
127 128 6.597562 TCCGGTTTAGAGCATGGTTAATAAT 58.402 36.000 0.00 0.00 0.00 1.28
128 129 5.991861 TCCGGTTTAGAGCATGGTTAATAA 58.008 37.500 0.00 0.00 0.00 1.40
129 130 5.617528 TCCGGTTTAGAGCATGGTTAATA 57.382 39.130 0.00 0.00 0.00 0.98
130 131 4.497291 TCCGGTTTAGAGCATGGTTAAT 57.503 40.909 0.00 0.00 0.00 1.40
131 132 3.985019 TCCGGTTTAGAGCATGGTTAA 57.015 42.857 0.00 0.00 0.00 2.01
132 133 3.985019 TTCCGGTTTAGAGCATGGTTA 57.015 42.857 0.00 0.00 0.00 2.85
133 134 2.871096 TTCCGGTTTAGAGCATGGTT 57.129 45.000 0.00 0.00 0.00 3.67
134 135 2.618045 CCTTTCCGGTTTAGAGCATGGT 60.618 50.000 0.00 0.00 0.00 3.55
135 136 2.017049 CCTTTCCGGTTTAGAGCATGG 58.983 52.381 0.00 0.00 0.00 3.66
136 137 2.939103 CTCCTTTCCGGTTTAGAGCATG 59.061 50.000 0.00 0.00 0.00 4.06
137 138 2.092914 CCTCCTTTCCGGTTTAGAGCAT 60.093 50.000 0.00 0.00 0.00 3.79
138 139 1.278127 CCTCCTTTCCGGTTTAGAGCA 59.722 52.381 0.00 0.00 0.00 4.26
139 140 1.407025 CCCTCCTTTCCGGTTTAGAGC 60.407 57.143 0.00 0.00 0.00 4.09
140 141 2.168728 CTCCCTCCTTTCCGGTTTAGAG 59.831 54.545 0.00 4.34 0.00 2.43
141 142 2.185387 CTCCCTCCTTTCCGGTTTAGA 58.815 52.381 0.00 0.00 0.00 2.10
142 143 1.907255 ACTCCCTCCTTTCCGGTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
143 144 2.034436 ACTCCCTCCTTTCCGGTTTA 57.966 50.000 0.00 0.00 0.00 2.01
144 145 2.034436 TACTCCCTCCTTTCCGGTTT 57.966 50.000 0.00 0.00 0.00 3.27
145 146 2.117051 GATACTCCCTCCTTTCCGGTT 58.883 52.381 0.00 0.00 0.00 4.44
146 147 1.691801 GGATACTCCCTCCTTTCCGGT 60.692 57.143 0.00 0.00 0.00 5.28
147 148 1.049402 GGATACTCCCTCCTTTCCGG 58.951 60.000 0.00 0.00 0.00 5.14
148 149 1.789523 TGGATACTCCCTCCTTTCCG 58.210 55.000 0.00 0.00 35.03 4.30
149 150 3.071747 GTGATGGATACTCCCTCCTTTCC 59.928 52.174 0.00 0.00 35.03 3.13
150 151 3.711704 TGTGATGGATACTCCCTCCTTTC 59.288 47.826 0.00 0.00 35.03 2.62
151 152 3.456277 GTGTGATGGATACTCCCTCCTTT 59.544 47.826 0.00 0.00 35.03 3.11
152 153 3.041946 GTGTGATGGATACTCCCTCCTT 58.958 50.000 0.00 0.00 35.03 3.36
153 154 2.683768 GTGTGATGGATACTCCCTCCT 58.316 52.381 0.00 0.00 35.03 3.69
154 155 1.694696 GGTGTGATGGATACTCCCTCC 59.305 57.143 0.00 0.00 35.03 4.30
155 156 2.103263 GTGGTGTGATGGATACTCCCTC 59.897 54.545 0.00 0.00 35.03 4.30
156 157 2.119495 GTGGTGTGATGGATACTCCCT 58.881 52.381 0.00 0.00 35.03 4.20
157 158 1.141053 GGTGGTGTGATGGATACTCCC 59.859 57.143 0.00 0.00 35.03 4.30
158 159 1.141053 GGGTGGTGTGATGGATACTCC 59.859 57.143 0.00 0.00 36.96 3.85
159 160 1.837439 TGGGTGGTGTGATGGATACTC 59.163 52.381 0.00 0.00 37.61 2.59
160 161 1.559682 GTGGGTGGTGTGATGGATACT 59.440 52.381 0.00 0.00 37.61 2.12
311 318 4.194640 AGAGATGTCACCAATTTGATCCG 58.805 43.478 0.00 0.00 0.00 4.18
346 353 3.054065 GGAGAAAGGAGACATGGATTGGT 60.054 47.826 0.00 0.00 0.00 3.67
361 371 6.861905 CCGAAGTGTATTTCACCGGAGAAAG 61.862 48.000 27.19 13.84 46.87 2.62
362 372 5.094260 CCGAAGTGTATTTCACCGGAGAAA 61.094 45.833 26.01 26.01 46.87 2.52
363 373 3.615592 CCGAAGTGTATTTCACCGGAGAA 60.616 47.826 9.46 10.09 46.87 2.87
364 374 2.094390 CCGAAGTGTATTTCACCGGAGA 60.094 50.000 9.46 1.33 46.87 3.71
365 375 2.268298 CCGAAGTGTATTTCACCGGAG 58.732 52.381 9.46 0.00 46.87 4.63
366 376 1.619827 ACCGAAGTGTATTTCACCGGA 59.380 47.619 9.46 0.00 46.87 5.14
370 380 3.435671 CCAGGAACCGAAGTGTATTTCAC 59.564 47.826 0.00 0.00 46.46 3.18
371 381 3.071892 ACCAGGAACCGAAGTGTATTTCA 59.928 43.478 0.00 0.00 0.00 2.69
372 382 3.671716 ACCAGGAACCGAAGTGTATTTC 58.328 45.455 0.00 0.00 0.00 2.17
373 383 3.782656 ACCAGGAACCGAAGTGTATTT 57.217 42.857 0.00 0.00 0.00 1.40
374 384 3.181448 ACAACCAGGAACCGAAGTGTATT 60.181 43.478 0.00 0.00 0.00 1.89
375 385 2.370849 ACAACCAGGAACCGAAGTGTAT 59.629 45.455 0.00 0.00 0.00 2.29
376 386 1.764134 ACAACCAGGAACCGAAGTGTA 59.236 47.619 0.00 0.00 0.00 2.90
377 387 0.544697 ACAACCAGGAACCGAAGTGT 59.455 50.000 0.00 0.00 0.00 3.55
378 388 2.536761 TACAACCAGGAACCGAAGTG 57.463 50.000 0.00 0.00 0.00 3.16
379 389 5.422970 TGTATATACAACCAGGAACCGAAGT 59.577 40.000 13.24 0.00 32.40 3.01
380 390 5.751990 GTGTATATACAACCAGGAACCGAAG 59.248 44.000 17.07 0.00 38.04 3.79
381 391 5.422970 AGTGTATATACAACCAGGAACCGAA 59.577 40.000 17.07 0.00 38.04 4.30
382 392 4.957954 AGTGTATATACAACCAGGAACCGA 59.042 41.667 17.07 0.00 38.04 4.69
383 393 5.068723 AGAGTGTATATACAACCAGGAACCG 59.931 44.000 17.07 0.00 38.04 4.44
384 394 6.481434 AGAGTGTATATACAACCAGGAACC 57.519 41.667 17.07 2.09 38.04 3.62
387 397 9.475620 CCATATAGAGTGTATATACAACCAGGA 57.524 37.037 17.07 3.13 38.04 3.86
388 398 9.475620 TCCATATAGAGTGTATATACAACCAGG 57.524 37.037 17.07 10.84 38.04 4.45
468 478 8.793592 AGTGAAAAAGTAAGTCAAGTTTGTTCT 58.206 29.630 0.00 0.00 0.00 3.01
469 479 8.965986 AGTGAAAAAGTAAGTCAAGTTTGTTC 57.034 30.769 0.00 0.00 0.00 3.18
471 481 9.227777 ACTAGTGAAAAAGTAAGTCAAGTTTGT 57.772 29.630 0.00 0.00 0.00 2.83
487 497 9.491675 TCGTGGAAATTTACATACTAGTGAAAA 57.508 29.630 6.33 1.25 0.00 2.29
488 498 9.491675 TTCGTGGAAATTTACATACTAGTGAAA 57.508 29.630 6.33 1.36 0.00 2.69
489 499 9.491675 TTTCGTGGAAATTTACATACTAGTGAA 57.508 29.630 6.33 0.80 0.00 3.18
490 500 9.661563 ATTTCGTGGAAATTTACATACTAGTGA 57.338 29.630 6.33 0.00 38.89 3.41
507 517 9.967346 TGTTAACATTGATTTTTATTTCGTGGA 57.033 25.926 3.59 0.00 0.00 4.02
517 527 9.814899 TTCACTGTGATGTTAACATTGATTTTT 57.185 25.926 21.63 0.00 37.16 1.94
518 528 9.814899 TTTCACTGTGATGTTAACATTGATTTT 57.185 25.926 21.63 0.00 37.16 1.82
519 529 9.814899 TTTTCACTGTGATGTTAACATTGATTT 57.185 25.926 21.63 0.00 37.16 2.17
520 530 9.814899 TTTTTCACTGTGATGTTAACATTGATT 57.185 25.926 21.63 0.00 37.16 2.57
521 531 9.467258 CTTTTTCACTGTGATGTTAACATTGAT 57.533 29.630 21.63 0.37 37.16 2.57
522 532 8.681806 TCTTTTTCACTGTGATGTTAACATTGA 58.318 29.630 21.63 17.05 35.98 2.57
523 533 8.745837 GTCTTTTTCACTGTGATGTTAACATTG 58.254 33.333 21.63 15.15 36.57 2.82
524 534 8.465999 TGTCTTTTTCACTGTGATGTTAACATT 58.534 29.630 21.63 6.41 36.57 2.71
525 535 7.995289 TGTCTTTTTCACTGTGATGTTAACAT 58.005 30.769 20.93 20.93 39.70 2.71
526 536 7.384439 TGTCTTTTTCACTGTGATGTTAACA 57.616 32.000 11.41 11.41 0.00 2.41
527 537 8.856490 ATTGTCTTTTTCACTGTGATGTTAAC 57.144 30.769 11.86 8.43 0.00 2.01
528 538 9.868277 AAATTGTCTTTTTCACTGTGATGTTAA 57.132 25.926 11.86 0.00 0.00 2.01
555 565 9.860650 TGTGAATAGTGGCCTATAATAACAAAT 57.139 29.630 3.32 0.00 32.57 2.32
556 566 9.116067 GTGTGAATAGTGGCCTATAATAACAAA 57.884 33.333 3.32 0.00 32.57 2.83
557 567 8.491134 AGTGTGAATAGTGGCCTATAATAACAA 58.509 33.333 3.32 0.00 32.57 2.83
558 568 8.029782 AGTGTGAATAGTGGCCTATAATAACA 57.970 34.615 3.32 0.00 32.57 2.41
563 573 9.337396 CAAAATAGTGTGAATAGTGGCCTATAA 57.663 33.333 3.32 0.00 32.57 0.98
564 574 7.936847 CCAAAATAGTGTGAATAGTGGCCTATA 59.063 37.037 3.32 0.00 32.57 1.31
565 575 6.772716 CCAAAATAGTGTGAATAGTGGCCTAT 59.227 38.462 3.32 0.00 35.33 2.57
566 576 6.119536 CCAAAATAGTGTGAATAGTGGCCTA 58.880 40.000 3.32 0.00 0.00 3.93
567 577 4.949856 CCAAAATAGTGTGAATAGTGGCCT 59.050 41.667 3.32 0.00 0.00 5.19
568 578 4.440112 GCCAAAATAGTGTGAATAGTGGCC 60.440 45.833 0.00 0.00 42.53 5.36
569 579 4.440112 GGCCAAAATAGTGTGAATAGTGGC 60.440 45.833 0.00 2.24 46.57 5.01
570 580 4.704540 TGGCCAAAATAGTGTGAATAGTGG 59.295 41.667 0.61 0.00 0.00 4.00
571 581 5.895636 TGGCCAAAATAGTGTGAATAGTG 57.104 39.130 0.61 0.00 0.00 2.74
572 582 6.909550 TTTGGCCAAAATAGTGTGAATAGT 57.090 33.333 28.57 0.00 0.00 2.12
573 583 8.776376 AATTTTGGCCAAAATAGTGTGAATAG 57.224 30.769 42.25 0.00 46.76 1.73
574 584 9.566432 AAAATTTTGGCCAAAATAGTGTGAATA 57.434 25.926 42.25 21.56 46.76 1.75
575 585 8.351461 CAAAATTTTGGCCAAAATAGTGTGAAT 58.649 29.630 42.25 27.72 46.76 2.57
576 586 7.337942 ACAAAATTTTGGCCAAAATAGTGTGAA 59.662 29.630 39.52 24.56 46.76 3.18
577 587 6.825721 ACAAAATTTTGGCCAAAATAGTGTGA 59.174 30.769 39.52 25.10 46.76 3.58
578 588 7.025485 ACAAAATTTTGGCCAAAATAGTGTG 57.975 32.000 39.52 34.62 46.76 3.82
579 589 7.258022 GACAAAATTTTGGCCAAAATAGTGT 57.742 32.000 40.06 40.06 46.76 3.55
605 615 7.439108 TCCCCCTTTGACTTATTTTCAAAAA 57.561 32.000 0.00 0.00 41.32 1.94
606 616 7.625498 ATCCCCCTTTGACTTATTTTCAAAA 57.375 32.000 0.00 0.00 41.32 2.44
607 617 7.512402 AGAATCCCCCTTTGACTTATTTTCAAA 59.488 33.333 0.00 0.00 39.99 2.69
608 618 7.016296 AGAATCCCCCTTTGACTTATTTTCAA 58.984 34.615 0.00 0.00 0.00 2.69
609 619 6.561294 AGAATCCCCCTTTGACTTATTTTCA 58.439 36.000 0.00 0.00 0.00 2.69
610 620 7.482169 AAGAATCCCCCTTTGACTTATTTTC 57.518 36.000 0.00 0.00 0.00 2.29
611 621 7.872061 AAAGAATCCCCCTTTGACTTATTTT 57.128 32.000 0.00 0.00 33.07 1.82
612 622 7.872061 AAAAGAATCCCCCTTTGACTTATTT 57.128 32.000 0.00 0.00 34.42 1.40
613 623 7.872061 AAAAAGAATCCCCCTTTGACTTATT 57.128 32.000 0.00 0.00 34.42 1.40
640 650 9.301153 ACATTGTACTTGTGAGAAAATTTTCAC 57.699 29.630 28.00 23.04 43.07 3.18
644 654 9.965824 CCTTACATTGTACTTGTGAGAAAATTT 57.034 29.630 17.13 0.00 33.76 1.82
645 655 9.131791 ACCTTACATTGTACTTGTGAGAAAATT 57.868 29.630 17.13 0.00 33.76 1.82
646 656 8.691661 ACCTTACATTGTACTTGTGAGAAAAT 57.308 30.769 17.13 0.00 33.76 1.82
647 657 7.771361 TGACCTTACATTGTACTTGTGAGAAAA 59.229 33.333 17.13 3.59 33.76 2.29
648 658 7.276658 TGACCTTACATTGTACTTGTGAGAAA 58.723 34.615 17.13 3.86 33.76 2.52
649 659 6.822442 TGACCTTACATTGTACTTGTGAGAA 58.178 36.000 17.13 4.11 33.76 2.87
650 660 6.413783 TGACCTTACATTGTACTTGTGAGA 57.586 37.500 17.13 2.08 33.76 3.27
651 661 6.706270 ACTTGACCTTACATTGTACTTGTGAG 59.294 38.462 10.97 11.37 32.22 3.51
652 662 6.588204 ACTTGACCTTACATTGTACTTGTGA 58.412 36.000 10.97 3.85 0.00 3.58
653 663 6.861065 ACTTGACCTTACATTGTACTTGTG 57.139 37.500 10.97 2.63 0.00 3.33
654 664 7.875327 AAACTTGACCTTACATTGTACTTGT 57.125 32.000 0.00 7.12 0.00 3.16
732 742 8.387813 GGGGACATATACACCCTATATGAAAAA 58.612 37.037 12.32 0.00 42.86 1.94
733 743 7.517953 TGGGGACATATACACCCTATATGAAAA 59.482 37.037 12.32 0.00 43.72 2.29
734 744 7.026247 TGGGGACATATACACCCTATATGAAA 58.974 38.462 12.32 0.00 43.72 2.69
735 745 6.576360 TGGGGACATATACACCCTATATGAA 58.424 40.000 12.32 0.00 43.72 2.57
736 746 6.173676 TGGGGACATATACACCCTATATGA 57.826 41.667 12.32 0.00 43.72 2.15
751 761 4.569865 GGAACTTTTGGTCTATGGGGACAT 60.570 45.833 0.00 0.00 43.22 3.06
752 762 3.245122 GGAACTTTTGGTCTATGGGGACA 60.245 47.826 0.00 0.00 39.95 4.02
753 763 3.353557 GGAACTTTTGGTCTATGGGGAC 58.646 50.000 0.00 0.00 36.15 4.46
754 764 2.310647 GGGAACTTTTGGTCTATGGGGA 59.689 50.000 0.00 0.00 36.15 4.81
755 765 2.623239 GGGGAACTTTTGGTCTATGGGG 60.623 54.545 0.00 0.00 36.15 4.96
756 766 2.623239 GGGGGAACTTTTGGTCTATGGG 60.623 54.545 0.00 0.00 36.15 4.00
757 767 2.311841 AGGGGGAACTTTTGGTCTATGG 59.688 50.000 0.00 0.00 36.15 2.74
758 768 3.621558 GAGGGGGAACTTTTGGTCTATG 58.378 50.000 0.00 0.00 36.15 2.23
759 769 2.581246 GGAGGGGGAACTTTTGGTCTAT 59.419 50.000 0.00 0.00 36.15 1.98
760 770 1.990327 GGAGGGGGAACTTTTGGTCTA 59.010 52.381 0.00 0.00 36.15 2.59
761 771 0.778083 GGAGGGGGAACTTTTGGTCT 59.222 55.000 0.00 0.00 36.15 3.85
762 772 0.251653 GGGAGGGGGAACTTTTGGTC 60.252 60.000 0.00 0.00 34.82 4.02
763 773 0.704813 AGGGAGGGGGAACTTTTGGT 60.705 55.000 0.00 0.00 0.00 3.67
764 774 0.487325 AAGGGAGGGGGAACTTTTGG 59.513 55.000 0.00 0.00 0.00 3.28
765 775 2.158310 AGAAAGGGAGGGGGAACTTTTG 60.158 50.000 0.00 0.00 33.66 2.44
766 776 2.110188 GAGAAAGGGAGGGGGAACTTTT 59.890 50.000 0.00 0.00 33.66 2.27
767 777 1.711375 GAGAAAGGGAGGGGGAACTTT 59.289 52.381 0.00 0.00 35.99 2.66
768 778 1.373536 GAGAAAGGGAGGGGGAACTT 58.626 55.000 0.00 0.00 0.00 2.66
769 779 0.550393 GGAGAAAGGGAGGGGGAACT 60.550 60.000 0.00 0.00 0.00 3.01
770 780 1.911702 CGGAGAAAGGGAGGGGGAAC 61.912 65.000 0.00 0.00 0.00 3.62
771 781 1.615424 CGGAGAAAGGGAGGGGGAA 60.615 63.158 0.00 0.00 0.00 3.97
772 782 2.040606 CGGAGAAAGGGAGGGGGA 59.959 66.667 0.00 0.00 0.00 4.81
773 783 2.285442 ACGGAGAAAGGGAGGGGG 60.285 66.667 0.00 0.00 0.00 5.40
774 784 2.368011 GGACGGAGAAAGGGAGGGG 61.368 68.421 0.00 0.00 0.00 4.79
775 785 2.368011 GGGACGGAGAAAGGGAGGG 61.368 68.421 0.00 0.00 0.00 4.30
776 786 0.910088 AAGGGACGGAGAAAGGGAGG 60.910 60.000 0.00 0.00 0.00 4.30
777 787 0.537653 GAAGGGACGGAGAAAGGGAG 59.462 60.000 0.00 0.00 0.00 4.30
778 788 0.908180 GGAAGGGACGGAGAAAGGGA 60.908 60.000 0.00 0.00 0.00 4.20
779 789 0.910088 AGGAAGGGACGGAGAAAGGG 60.910 60.000 0.00 0.00 0.00 3.95
1020 1081 2.690510 AGGAGGGGGAGCAAGAGC 60.691 66.667 0.00 0.00 42.56 4.09
1063 1130 1.940883 TAGATCGTTTCTGCGGCGGT 61.941 55.000 9.78 0.00 35.79 5.68
1203 1270 1.520666 CACCCGGTTAGGCCAGTAG 59.479 63.158 5.01 0.00 39.21 2.57
1245 1312 2.182030 GAAGAGTCGACGCCAGGG 59.818 66.667 16.07 0.00 0.00 4.45
1427 1497 9.856162 ATCCTGTAAAACAAAACTTACCTTCTA 57.144 29.630 0.00 0.00 0.00 2.10
1535 1613 1.134340 ACCAGTCGCAAACCAAGTACA 60.134 47.619 0.00 0.00 0.00 2.90
1536 1614 1.589803 ACCAGTCGCAAACCAAGTAC 58.410 50.000 0.00 0.00 0.00 2.73
1594 1672 5.650703 CCTAAGAGGCTCTAGCTAATCCTAC 59.349 48.000 19.07 3.81 41.70 3.18
1797 3510 6.314784 ACGAGCAAAATTTTTAGGATTCTCG 58.685 36.000 0.00 11.98 43.40 4.04
1815 3529 3.126001 ACTCCTCAAATTTGACGAGCA 57.874 42.857 30.82 9.93 41.21 4.26
1906 3641 1.575788 GGGATTTGGGGGAAGAAGGAT 59.424 52.381 0.00 0.00 0.00 3.24
1982 3721 1.525535 CTAGCTGGCTCATGGGCAC 60.526 63.158 21.47 9.56 45.79 5.01
1985 3959 2.834688 CCCTAGCTGGCTCATGGG 59.165 66.667 0.00 11.60 0.00 4.00
1994 3968 2.961531 TCTACTCTAGGCCCTAGCTG 57.038 55.000 13.26 10.45 39.73 4.24
2100 5077 0.615544 CCAAACTGTGGCCCATGGAT 60.616 55.000 15.22 0.00 41.72 3.41
2112 5089 0.385390 GTGAAGTGGTGCCCAAACTG 59.615 55.000 0.00 0.00 34.18 3.16
2113 5090 0.755327 GGTGAAGTGGTGCCCAAACT 60.755 55.000 0.00 0.00 34.18 2.66
2124 5101 3.760580 AAGAGGAGTTCAGGTGAAGTG 57.239 47.619 4.76 0.00 37.79 3.16
2125 5102 3.745797 GCAAAGAGGAGTTCAGGTGAAGT 60.746 47.826 0.00 0.00 40.17 3.01
2130 5107 2.301583 GAGAGCAAAGAGGAGTTCAGGT 59.698 50.000 0.00 0.00 0.00 4.00
2131 5108 2.354604 GGAGAGCAAAGAGGAGTTCAGG 60.355 54.545 0.00 0.00 0.00 3.86
2136 5114 3.466395 ACTAGGAGAGCAAAGAGGAGT 57.534 47.619 0.00 0.00 0.00 3.85
2145 5128 2.432146 CCATTGTGCTACTAGGAGAGCA 59.568 50.000 6.02 9.14 46.24 4.26
2149 5132 1.137086 ACGCCATTGTGCTACTAGGAG 59.863 52.381 0.00 0.00 0.00 3.69
2168 5151 2.231215 ATCATTGCGTCCTAGAGCAC 57.769 50.000 6.94 0.00 43.69 4.40
2260 5295 2.249844 TTTGTTTCGTCCTCTGGTCC 57.750 50.000 0.00 0.00 0.00 4.46
2276 5311 8.213812 CGCCTATAAAAATTCGGCAATATTTTG 58.786 33.333 0.00 0.00 40.72 2.44
2296 5332 1.485124 TGACTCCACACATCGCCTAT 58.515 50.000 0.00 0.00 0.00 2.57
2297 5333 1.262417 TTGACTCCACACATCGCCTA 58.738 50.000 0.00 0.00 0.00 3.93
2379 5417 2.669569 CGTGCAACACCTCCTGGG 60.670 66.667 0.00 0.00 35.74 4.45
2380 5418 3.357079 GCGTGCAACACCTCCTGG 61.357 66.667 0.00 0.00 35.74 4.45
2381 5419 2.281070 AGCGTGCAACACCTCCTG 60.281 61.111 0.00 0.00 35.74 3.86
2382 5420 2.281070 CAGCGTGCAACACCTCCT 60.281 61.111 0.00 0.00 35.74 3.69
2404 5719 1.525077 CCTCTCTCTCCCTCGACGG 60.525 68.421 0.00 0.00 0.00 4.79
2410 5725 1.786441 CCCTACATCCTCTCTCTCCCT 59.214 57.143 0.00 0.00 0.00 4.20
2460 5786 4.607239 ACTCCTTAGACCATTCGAACCTA 58.393 43.478 0.00 0.00 0.00 3.08
2500 5828 8.445588 TCTTTTGAAGAGTTAACCCCTTTAGAT 58.554 33.333 0.88 0.00 32.71 1.98
2533 5993 9.678260 CTCCCCTAAATTTCTATAATCCTCATG 57.322 37.037 0.00 0.00 0.00 3.07
2587 6049 4.223923 AGTTCTCCATCTCGGTTCAATCTT 59.776 41.667 0.00 0.00 35.57 2.40
2608 6070 4.082125 CCTTCTCAATGCCAAGGTAAAGT 58.918 43.478 2.84 0.00 33.24 2.66
2624 6086 0.179097 GCGGGATCACTGACCTTCTC 60.179 60.000 0.00 0.00 0.00 2.87
2625 6087 1.617947 GGCGGGATCACTGACCTTCT 61.618 60.000 0.00 0.00 0.00 2.85
2680 6144 0.895100 GATGCCAAGTGCCTTGTCCA 60.895 55.000 12.18 9.63 39.58 4.02
2749 6233 1.760086 GCCTCTCCTGCCTAGCTGA 60.760 63.158 0.00 0.00 0.00 4.26
2791 6277 1.663695 CGTCTTCCGCCATATGGTTT 58.336 50.000 22.79 0.00 37.57 3.27
2803 6289 1.389609 TATCCGCTCCACCGTCTTCC 61.390 60.000 0.00 0.00 0.00 3.46
2809 6295 2.815308 AGCTTATCCGCTCCACCG 59.185 61.111 0.00 0.00 34.57 4.94
2829 6315 4.023963 TCACATCGCACTGTCTAGCTATAC 60.024 45.833 2.39 2.39 0.00 1.47
2832 6318 2.365582 TCACATCGCACTGTCTAGCTA 58.634 47.619 0.00 0.00 0.00 3.32
2864 6350 8.876275 ATAATAATCATGCAATGTTGTGGAAC 57.124 30.769 0.00 0.00 46.80 3.62
3000 6508 6.656632 TTCCATCTGGACATAGTAGATCAC 57.343 41.667 0.00 0.00 45.39 3.06
3131 6639 4.217334 TCTTTTATCACGCCATTCTTGCAA 59.783 37.500 0.00 0.00 0.00 4.08
3416 6929 5.679734 AATCACGATTCAGGTAATCATGC 57.320 39.130 0.00 0.00 43.68 4.06
3713 7240 3.217626 CCCAGCATCTAAATCACTTCCC 58.782 50.000 0.00 0.00 0.00 3.97
3763 7290 8.514594 ACCATCAGTTAATAGTGATTTGTTGTG 58.485 33.333 0.00 0.00 41.47 3.33
3767 7294 8.522830 CCAAACCATCAGTTAATAGTGATTTGT 58.477 33.333 0.00 0.00 41.47 2.83
3772 7299 6.134535 ACCCAAACCATCAGTTAATAGTGA 57.865 37.500 0.00 0.00 37.88 3.41
3780 7307 7.343574 ACTTAAGTAAAACCCAAACCATCAGTT 59.656 33.333 6.26 0.00 41.81 3.16
3782 7309 7.284919 ACTTAAGTAAAACCCAAACCATCAG 57.715 36.000 6.26 0.00 0.00 2.90
3810 7337 4.142271 TGACCAACTGTTGTCCACAAATTC 60.142 41.667 18.38 2.77 37.63 2.17
4006 7534 2.102757 TGGTACACTTGGCTTCGTTGTA 59.897 45.455 0.00 0.00 0.00 2.41
4008 7536 1.588674 TGGTACACTTGGCTTCGTTG 58.411 50.000 0.00 0.00 0.00 4.10
4147 7678 7.206687 TGAAGCCAATTCGTTTCTACAAAAAT 58.793 30.769 1.79 0.00 41.14 1.82
4161 7692 2.283298 TCATCGCTCTGAAGCCAATTC 58.717 47.619 0.00 0.00 46.34 2.17
4169 7700 4.937201 TTAAGCCTATCATCGCTCTGAA 57.063 40.909 0.00 0.00 33.09 3.02
4171 7702 5.053145 AGTTTTAAGCCTATCATCGCTCTG 58.947 41.667 0.00 0.00 33.09 3.35
4243 7774 3.181397 GTCACATCATCAAAATTGCCCG 58.819 45.455 0.00 0.00 0.00 6.13
4244 7775 4.191033 TGTCACATCATCAAAATTGCCC 57.809 40.909 0.00 0.00 0.00 5.36
4272 7803 7.466804 ACCCAGTCCTCTATTTTGTTCATTTA 58.533 34.615 0.00 0.00 0.00 1.40
4292 7823 8.072321 AGTATCATGCACTATAGAATACCCAG 57.928 38.462 6.78 0.00 0.00 4.45
4300 7831 5.354513 GCGTCCTAGTATCATGCACTATAGA 59.645 44.000 6.78 5.70 0.00 1.98
4301 7832 5.574082 GCGTCCTAGTATCATGCACTATAG 58.426 45.833 0.00 0.00 0.00 1.31
4304 7835 2.225727 CGCGTCCTAGTATCATGCACTA 59.774 50.000 0.00 6.78 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.