Multiple sequence alignment - TraesCS6D01G051500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G051500 chr6D 100.000 5306 0 0 1 5306 24552829 24558134 0.000000e+00 9799
1 TraesCS6D01G051500 chr6D 88.496 113 9 2 1695 1805 24554633 24554523 3.330000e-27 134
2 TraesCS6D01G051500 chr6A 94.002 3518 114 29 1830 5306 23414198 23410737 0.000000e+00 5238
3 TraesCS6D01G051500 chr6A 87.500 640 21 19 711 1322 23415220 23414612 0.000000e+00 684
4 TraesCS6D01G051500 chr6A 92.857 112 4 2 1322 1430 23414526 23414416 5.500000e-35 159
5 TraesCS6D01G051500 chr6B 88.548 2052 174 32 2414 4423 40279442 40281474 0.000000e+00 2431
6 TraesCS6D01G051500 chr6B 93.772 835 37 10 4480 5306 40281978 40282805 0.000000e+00 1240
7 TraesCS6D01G051500 chr6B 81.125 1298 142 56 74 1322 40277192 40278435 0.000000e+00 944
8 TraesCS6D01G051500 chr6B 93.632 581 28 8 1805 2378 40278872 40279450 0.000000e+00 859
9 TraesCS6D01G051500 chr6B 86.702 376 25 18 1319 1694 40278520 40278870 1.390000e-105 394
10 TraesCS6D01G051500 chr5B 90.265 113 7 3 1693 1805 615005129 615005021 1.540000e-30 145
11 TraesCS6D01G051500 chr2D 89.381 113 5 3 1696 1805 484046358 484046250 9.270000e-28 135
12 TraesCS6D01G051500 chr3A 88.288 111 12 1 1694 1804 35061013 35061122 1.200000e-26 132
13 TraesCS6D01G051500 chr3A 88.288 111 12 1 1694 1804 35109216 35109325 1.200000e-26 132
14 TraesCS6D01G051500 chr3A 87.719 114 12 2 1694 1806 53027997 53028109 1.200000e-26 132
15 TraesCS6D01G051500 chr4A 84.483 116 13 3 1692 1807 208037886 208037996 5.620000e-20 110
16 TraesCS6D01G051500 chr1D 84.071 113 13 1 1693 1805 76975367 76975474 2.610000e-18 104
17 TraesCS6D01G051500 chr1D 83.333 114 14 4 1692 1805 69110723 69110831 3.380000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G051500 chr6D 24552829 24558134 5305 False 9799.0 9799 100.0000 1 5306 1 chr6D.!!$F1 5305
1 TraesCS6D01G051500 chr6A 23410737 23415220 4483 True 2027.0 5238 91.4530 711 5306 3 chr6A.!!$R1 4595
2 TraesCS6D01G051500 chr6B 40277192 40282805 5613 False 1173.6 2431 88.7558 74 5306 5 chr6B.!!$F1 5232

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
496 507 0.178533 AGTCGGTCCCTCTCTCGTAG 59.821 60.0 0.0 0.0 0.00 3.51 F
599 611 0.318120 CTTTGCCCATGAGCCGTTTT 59.682 50.0 0.0 0.0 0.00 2.43 F
1952 2132 0.610174 TCACAAGCTGGCTCTACTGG 59.390 55.0 0.0 0.0 0.00 4.00 F
3389 3587 0.462759 GCAGAGGCTGGTGTCCATAC 60.463 60.0 0.0 0.0 36.96 2.39 F
3768 3985 0.034059 GAGTATCATGTCCCCTGCCG 59.966 60.0 0.0 0.0 33.17 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1524 1686 0.038251 GCCTTAGCCAAGCAAACACC 60.038 55.000 0.0 0.0 0.00 4.16 R
2518 2712 1.480954 GCAACCGAGTCAAGGGAGATA 59.519 52.381 0.0 0.0 0.00 1.98 R
3393 3591 0.107312 CAATCCCAGGAGAGGCACAG 60.107 60.000 0.0 0.0 0.00 3.66 R
4269 4505 0.249398 GACCATACCGGCACTGAACT 59.751 55.000 0.0 0.0 39.03 3.01 R
5190 5892 1.077265 CCCTCCATTTGCACCACCT 59.923 57.895 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.501396 CACGGCCAGTATGCAAGG 58.499 61.111 2.24 0.00 31.97 3.61
21 22 4.016838 GCCAGTATGCAAGGCCAA 57.983 55.556 5.01 0.00 42.58 4.52
22 23 2.508361 GCCAGTATGCAAGGCCAAT 58.492 52.632 5.01 0.00 42.58 3.16
23 24 1.691196 GCCAGTATGCAAGGCCAATA 58.309 50.000 5.01 0.00 42.58 1.90
24 25 1.338020 GCCAGTATGCAAGGCCAATAC 59.662 52.381 5.01 7.62 42.58 1.89
25 26 1.956477 CCAGTATGCAAGGCCAATACC 59.044 52.381 5.01 0.00 31.97 2.73
26 27 2.423373 CCAGTATGCAAGGCCAATACCT 60.423 50.000 5.01 0.00 36.59 3.08
27 28 2.620115 CAGTATGCAAGGCCAATACCTG 59.380 50.000 5.01 0.00 39.93 4.00
28 29 2.509548 AGTATGCAAGGCCAATACCTGA 59.490 45.455 5.01 0.00 39.93 3.86
29 30 2.530460 ATGCAAGGCCAATACCTGAA 57.470 45.000 5.01 0.00 39.93 3.02
30 31 1.838112 TGCAAGGCCAATACCTGAAG 58.162 50.000 5.01 0.00 39.93 3.02
31 32 0.457443 GCAAGGCCAATACCTGAAGC 59.543 55.000 5.01 0.00 39.93 3.86
32 33 1.957113 GCAAGGCCAATACCTGAAGCT 60.957 52.381 5.01 0.00 39.93 3.74
33 34 2.683742 GCAAGGCCAATACCTGAAGCTA 60.684 50.000 5.01 0.00 39.93 3.32
34 35 3.620488 CAAGGCCAATACCTGAAGCTAA 58.380 45.455 5.01 0.00 39.93 3.09
35 36 3.567478 AGGCCAATACCTGAAGCTAAG 57.433 47.619 5.01 0.00 39.13 2.18
36 37 2.173569 AGGCCAATACCTGAAGCTAAGG 59.826 50.000 5.01 12.76 39.13 2.69
37 38 2.172717 GGCCAATACCTGAAGCTAAGGA 59.827 50.000 19.68 6.27 38.27 3.36
38 39 3.471680 GCCAATACCTGAAGCTAAGGAG 58.528 50.000 19.68 8.08 38.27 3.69
39 40 3.745797 GCCAATACCTGAAGCTAAGGAGG 60.746 52.174 19.68 15.33 38.27 4.30
40 41 3.456277 CCAATACCTGAAGCTAAGGAGGT 59.544 47.826 19.68 14.54 41.77 3.85
41 42 4.443598 CCAATACCTGAAGCTAAGGAGGTC 60.444 50.000 19.68 0.00 39.59 3.85
42 43 1.187087 ACCTGAAGCTAAGGAGGTCG 58.813 55.000 19.68 0.00 33.27 4.79
43 44 1.272536 ACCTGAAGCTAAGGAGGTCGA 60.273 52.381 19.68 0.00 33.27 4.20
44 45 2.035632 CCTGAAGCTAAGGAGGTCGAT 58.964 52.381 9.36 0.00 36.91 3.59
45 46 2.223923 CCTGAAGCTAAGGAGGTCGATG 60.224 54.545 9.36 0.00 36.91 3.84
46 47 1.137086 TGAAGCTAAGGAGGTCGATGC 59.863 52.381 0.00 0.00 31.35 3.91
47 48 1.137086 GAAGCTAAGGAGGTCGATGCA 59.863 52.381 0.00 0.00 31.35 3.96
48 49 1.418334 AGCTAAGGAGGTCGATGCAT 58.582 50.000 0.00 0.00 0.00 3.96
49 50 1.342819 AGCTAAGGAGGTCGATGCATC 59.657 52.381 17.10 17.10 0.00 3.91
50 51 1.069204 GCTAAGGAGGTCGATGCATCA 59.931 52.381 25.70 10.72 0.00 3.07
51 52 2.289320 GCTAAGGAGGTCGATGCATCAT 60.289 50.000 25.70 8.80 0.00 2.45
52 53 3.805108 GCTAAGGAGGTCGATGCATCATT 60.805 47.826 25.70 7.63 0.00 2.57
53 54 2.251409 AGGAGGTCGATGCATCATTG 57.749 50.000 25.70 10.37 0.00 2.82
63 64 3.213264 CATCATTGCACCCAGGGC 58.787 61.111 4.91 0.00 0.00 5.19
64 65 2.042639 ATCATTGCACCCAGGGCC 60.043 61.111 4.91 0.00 0.00 5.80
65 66 2.933617 ATCATTGCACCCAGGGCCA 61.934 57.895 4.91 0.00 0.00 5.36
66 67 3.384532 CATTGCACCCAGGGCCAC 61.385 66.667 4.91 0.00 0.00 5.01
67 68 3.593680 ATTGCACCCAGGGCCACT 61.594 61.111 4.91 0.00 0.00 4.00
68 69 2.237965 ATTGCACCCAGGGCCACTA 61.238 57.895 4.91 0.00 0.00 2.74
69 70 2.499303 ATTGCACCCAGGGCCACTAC 62.499 60.000 4.91 0.00 0.00 2.73
70 71 4.426313 GCACCCAGGGCCACTACC 62.426 72.222 4.91 0.00 0.00 3.18
71 72 2.933287 CACCCAGGGCCACTACCA 60.933 66.667 4.91 0.00 0.00 3.25
72 73 2.933834 ACCCAGGGCCACTACCAC 60.934 66.667 4.91 0.00 0.00 4.16
85 86 0.460284 CTACCACGGCTTCGATGCTT 60.460 55.000 21.05 7.55 37.63 3.91
87 88 2.697425 CACGGCTTCGATGCTTCG 59.303 61.111 21.05 18.54 46.87 3.79
92 93 2.730672 GCTTCGATGCTTCGTGCGT 61.731 57.895 19.92 0.00 45.65 5.24
98 99 2.568935 GATGCTTCGTGCGTTGGAGC 62.569 60.000 0.00 0.00 46.63 4.70
106 107 3.019964 TGCGTTGGAGCAAGACAAT 57.980 47.368 0.00 0.00 45.06 2.71
108 109 0.874390 GCGTTGGAGCAAGACAATGA 59.126 50.000 0.00 0.00 36.04 2.57
115 116 2.494870 GGAGCAAGACAATGAGGCATTT 59.505 45.455 0.00 0.00 31.05 2.32
118 119 2.231964 GCAAGACAATGAGGCATTTCCA 59.768 45.455 0.00 0.00 37.29 3.53
120 121 2.450476 AGACAATGAGGCATTTCCACC 58.550 47.619 0.00 0.00 37.29 4.61
123 124 0.325577 AATGAGGCATTTCCACCCCC 60.326 55.000 0.00 0.00 37.29 5.40
125 126 1.388133 GAGGCATTTCCACCCCCTT 59.612 57.895 0.00 0.00 37.29 3.95
126 127 0.684479 GAGGCATTTCCACCCCCTTC 60.684 60.000 0.00 0.00 37.29 3.46
127 128 2.052104 GGCATTTCCACCCCCTTCG 61.052 63.158 0.00 0.00 34.01 3.79
128 129 2.710902 GCATTTCCACCCCCTTCGC 61.711 63.158 0.00 0.00 0.00 4.70
129 130 1.000896 CATTTCCACCCCCTTCGCT 60.001 57.895 0.00 0.00 0.00 4.93
130 131 0.254747 CATTTCCACCCCCTTCGCTA 59.745 55.000 0.00 0.00 0.00 4.26
131 132 0.546598 ATTTCCACCCCCTTCGCTAG 59.453 55.000 0.00 0.00 0.00 3.42
133 134 0.545787 TTCCACCCCCTTCGCTAGAA 60.546 55.000 0.00 0.00 34.76 2.10
150 151 0.242017 GAAGCCAAGTGATGCACCAC 59.758 55.000 1.73 1.73 34.49 4.16
154 155 1.582968 CAAGTGATGCACCACTGGC 59.417 57.895 16.32 0.00 45.82 4.85
155 156 0.892358 CAAGTGATGCACCACTGGCT 60.892 55.000 16.32 0.00 45.82 4.75
156 157 0.607489 AAGTGATGCACCACTGGCTC 60.607 55.000 16.32 0.00 45.82 4.70
157 158 1.002868 GTGATGCACCACTGGCTCT 60.003 57.895 3.13 0.00 34.38 4.09
161 162 2.125753 GCACCACTGGCTCTCTCG 60.126 66.667 0.00 0.00 0.00 4.04
172 173 2.284625 TCTCTCGGGTGGTGGCAT 60.285 61.111 0.00 0.00 0.00 4.40
174 175 3.687321 CTCTCGGGTGGTGGCATGG 62.687 68.421 0.00 0.00 0.00 3.66
177 178 4.802051 CGGGTGGTGGCATGGAGG 62.802 72.222 0.00 0.00 0.00 4.30
179 180 2.763215 GGTGGTGGCATGGAGGAA 59.237 61.111 0.00 0.00 0.00 3.36
180 181 1.379044 GGTGGTGGCATGGAGGAAG 60.379 63.158 0.00 0.00 0.00 3.46
181 182 1.685224 GTGGTGGCATGGAGGAAGA 59.315 57.895 0.00 0.00 0.00 2.87
182 183 0.393537 GTGGTGGCATGGAGGAAGAG 60.394 60.000 0.00 0.00 0.00 2.85
183 184 0.547471 TGGTGGCATGGAGGAAGAGA 60.547 55.000 0.00 0.00 0.00 3.10
184 185 0.842635 GGTGGCATGGAGGAAGAGAT 59.157 55.000 0.00 0.00 0.00 2.75
186 187 1.211457 GTGGCATGGAGGAAGAGATGT 59.789 52.381 0.00 0.00 0.00 3.06
188 189 1.476471 GGCATGGAGGAAGAGATGTGG 60.476 57.143 0.00 0.00 0.00 4.17
194 201 4.425772 TGGAGGAAGAGATGTGGAAAGTA 58.574 43.478 0.00 0.00 0.00 2.24
203 210 4.111577 AGATGTGGAAAGTAGGGGATTGA 58.888 43.478 0.00 0.00 0.00 2.57
204 211 3.713826 TGTGGAAAGTAGGGGATTGAC 57.286 47.619 0.00 0.00 0.00 3.18
207 214 2.026262 TGGAAAGTAGGGGATTGACTGC 60.026 50.000 0.00 0.00 0.00 4.40
208 215 2.239907 GGAAAGTAGGGGATTGACTGCT 59.760 50.000 0.00 0.00 0.00 4.24
210 217 4.080526 GGAAAGTAGGGGATTGACTGCTAA 60.081 45.833 0.00 0.00 0.00 3.09
216 223 2.755103 GGGGATTGACTGCTAAGGTTTG 59.245 50.000 0.00 0.00 0.00 2.93
218 225 2.755103 GGATTGACTGCTAAGGTTTGGG 59.245 50.000 0.00 0.00 0.00 4.12
236 243 1.598701 GGCACCCTGGAGTCAATTGC 61.599 60.000 0.00 0.00 0.00 3.56
237 244 0.895100 GCACCCTGGAGTCAATTGCA 60.895 55.000 0.00 0.00 0.00 4.08
259 266 2.434359 GGGCAAACGAGGGAGACG 60.434 66.667 0.00 0.00 0.00 4.18
260 267 2.654877 GGCAAACGAGGGAGACGA 59.345 61.111 0.00 0.00 34.70 4.20
261 268 1.005394 GGCAAACGAGGGAGACGAA 60.005 57.895 0.00 0.00 34.70 3.85
280 287 4.818005 ACGAAGTGGTTTAGTTCCGAAAAT 59.182 37.500 0.00 0.00 42.51 1.82
303 310 7.738437 ATCAAAATAAGGTTTGGTCCATCAT 57.262 32.000 0.00 0.00 38.72 2.45
306 313 5.472301 AATAAGGTTTGGTCCATCATCCT 57.528 39.130 0.00 0.00 0.00 3.24
316 323 3.054065 GGTCCATCATCCTTGAGTTTCCT 60.054 47.826 0.00 0.00 34.73 3.36
320 327 4.566278 CCATCATCCTTGAGTTTCCTGACA 60.566 45.833 0.00 0.00 34.73 3.58
323 330 4.533707 TCATCCTTGAGTTTCCTGACATCT 59.466 41.667 0.00 0.00 0.00 2.90
324 331 4.543590 TCCTTGAGTTTCCTGACATCTC 57.456 45.455 0.00 0.00 0.00 2.75
329 336 3.191581 TGAGTTTCCTGACATCTCTCGAC 59.808 47.826 0.00 0.00 0.00 4.20
337 345 4.442612 CCTGACATCTCTCGACAAATCCAT 60.443 45.833 0.00 0.00 0.00 3.41
338 346 5.221322 CCTGACATCTCTCGACAAATCCATA 60.221 44.000 0.00 0.00 0.00 2.74
339 347 6.220726 TGACATCTCTCGACAAATCCATAA 57.779 37.500 0.00 0.00 0.00 1.90
346 354 6.642540 TCTCTCGACAAATCCATAAATCATCG 59.357 38.462 0.00 0.00 0.00 3.84
360 368 7.201723 CCATAAATCATCGACCTCAATCAAACA 60.202 37.037 0.00 0.00 0.00 2.83
362 370 6.573664 AATCATCGACCTCAATCAAACAAA 57.426 33.333 0.00 0.00 0.00 2.83
363 371 6.573664 ATCATCGACCTCAATCAAACAAAA 57.426 33.333 0.00 0.00 0.00 2.44
364 372 6.384258 TCATCGACCTCAATCAAACAAAAA 57.616 33.333 0.00 0.00 0.00 1.94
368 376 7.692908 TCGACCTCAATCAAACAAAAATTTC 57.307 32.000 0.00 0.00 0.00 2.17
369 377 7.488322 TCGACCTCAATCAAACAAAAATTTCT 58.512 30.769 0.00 0.00 0.00 2.52
371 379 7.434897 CGACCTCAATCAAACAAAAATTTCTGA 59.565 33.333 0.00 0.00 0.00 3.27
372 380 8.652810 ACCTCAATCAAACAAAAATTTCTGAG 57.347 30.769 0.00 0.00 0.00 3.35
373 381 7.225341 ACCTCAATCAAACAAAAATTTCTGAGC 59.775 33.333 0.00 0.00 0.00 4.26
375 383 8.133754 TCAATCAAACAAAAATTTCTGAGCAG 57.866 30.769 0.00 0.00 0.00 4.24
377 385 8.392612 CAATCAAACAAAAATTTCTGAGCAGTT 58.607 29.630 0.00 0.00 0.00 3.16
378 386 7.903995 TCAAACAAAAATTTCTGAGCAGTTT 57.096 28.000 0.00 0.00 0.00 2.66
379 387 8.994429 TCAAACAAAAATTTCTGAGCAGTTTA 57.006 26.923 0.00 0.00 0.00 2.01
380 388 9.086336 TCAAACAAAAATTTCTGAGCAGTTTAG 57.914 29.630 0.00 0.00 0.00 1.85
382 390 6.572519 ACAAAAATTTCTGAGCAGTTTAGCA 58.427 32.000 0.00 0.00 36.85 3.49
384 392 6.396829 AAAATTTCTGAGCAGTTTAGCACT 57.603 33.333 0.00 0.00 36.85 4.40
401 409 7.859325 TTAGCACTGACAGGGTTTATTTATC 57.141 36.000 6.57 0.00 0.00 1.75
406 414 7.654520 GCACTGACAGGGTTTATTTATCGTATA 59.345 37.037 6.57 0.00 0.00 1.47
407 415 8.975439 CACTGACAGGGTTTATTTATCGTATAC 58.025 37.037 7.51 0.00 0.00 1.47
416 424 8.768019 GGTTTATTTATCGTATACCGCTTCTTT 58.232 33.333 0.00 0.00 36.19 2.52
426 434 9.531942 TCGTATACCGCTTCTTTTCAAATATAA 57.468 29.630 0.00 0.00 36.19 0.98
427 435 9.577003 CGTATACCGCTTCTTTTCAAATATAAC 57.423 33.333 0.00 0.00 0.00 1.89
461 469 7.226128 GGAACCACCTAATCTTTAGTTAATCGG 59.774 40.741 0.00 0.00 35.41 4.18
462 470 7.427989 ACCACCTAATCTTTAGTTAATCGGA 57.572 36.000 0.00 0.00 0.00 4.55
467 478 9.955102 ACCTAATCTTTAGTTAATCGGACTTTT 57.045 29.630 0.00 0.00 0.00 2.27
493 504 2.115911 CCAGTCGGTCCCTCTCTCG 61.116 68.421 0.00 0.00 0.00 4.04
496 507 0.178533 AGTCGGTCCCTCTCTCGTAG 59.821 60.000 0.00 0.00 0.00 3.51
497 508 0.814812 GTCGGTCCCTCTCTCGTAGG 60.815 65.000 0.00 0.00 0.00 3.18
505 516 3.007473 CCTCTCTCGTAGGGTTCTTCT 57.993 52.381 0.00 0.00 0.00 2.85
508 519 2.577105 TCTCTCGTAGGGTTCTTCTCCT 59.423 50.000 0.00 0.00 37.18 3.69
509 520 2.946990 CTCTCGTAGGGTTCTTCTCCTC 59.053 54.545 0.00 0.00 34.75 3.71
513 524 0.342313 TAGGGTTCTTCTCCTCCCCC 59.658 60.000 0.00 0.00 40.70 5.40
527 538 4.798682 CCCCCTAGCCGACCCAGT 62.799 72.222 0.00 0.00 0.00 4.00
537 548 2.355115 GACCCAGTCCGGCCAAAT 59.645 61.111 2.24 0.00 0.00 2.32
584 596 3.058160 CCTCACAGCCCCGCTTTG 61.058 66.667 0.00 0.00 36.40 2.77
585 597 3.741476 CTCACAGCCCCGCTTTGC 61.741 66.667 0.00 0.00 36.44 3.68
592 604 3.142838 CCCCGCTTTGCCCATGAG 61.143 66.667 0.00 0.00 0.00 2.90
599 611 0.318120 CTTTGCCCATGAGCCGTTTT 59.682 50.000 0.00 0.00 0.00 2.43
607 619 3.488090 GAGCCGTTTTCTCCGCCG 61.488 66.667 0.00 0.00 0.00 6.46
624 636 4.439901 GAGCCCCCTTCCCCCTCT 62.440 72.222 0.00 0.00 0.00 3.69
697 713 2.508586 GAACTCGCTTCCGCTTCCCT 62.509 60.000 0.00 0.00 0.00 4.20
776 806 8.530804 AAATCAGGAAAATGAGGAATAGGAAG 57.469 34.615 0.00 0.00 31.44 3.46
798 829 7.222031 GGAAGTGCAAAGTTTTTCTAAACGATT 59.778 33.333 0.00 0.00 46.54 3.34
842 873 5.169295 AGTTAAAACGAAGGAATCTCCGAG 58.831 41.667 0.00 0.00 42.75 4.63
843 874 3.955650 AAAACGAAGGAATCTCCGAGA 57.044 42.857 0.00 0.00 42.75 4.04
844 875 3.512033 AAACGAAGGAATCTCCGAGAG 57.488 47.619 4.07 0.00 42.75 3.20
845 876 2.421751 ACGAAGGAATCTCCGAGAGA 57.578 50.000 4.07 6.14 42.75 3.10
861 892 3.131223 CGAGAGAGAGAGAGAGACAGAGT 59.869 52.174 0.00 0.00 0.00 3.24
873 904 4.994471 CAGAGTGCACAGCGGCCA 62.994 66.667 21.04 0.00 0.00 5.36
913 962 8.004215 AGTCCACTAGAATACAGATTGAGATCT 58.996 37.037 0.00 0.00 43.43 2.75
926 975 3.040763 GATCTCCATCGCCAGCGC 61.041 66.667 7.27 0.00 39.59 5.92
927 976 4.615815 ATCTCCATCGCCAGCGCC 62.616 66.667 2.29 0.00 39.59 6.53
1378 1529 7.418483 GCTTTTCAACTACTCTAGATGGGATCT 60.418 40.741 0.00 0.00 43.33 2.75
1404 1555 5.970317 TTAACTGTTCATCCTACTCACGA 57.030 39.130 0.00 0.00 0.00 4.35
1434 1588 6.183360 TGGTTTTAGGTCGTCTAGTTTTCTGA 60.183 38.462 0.00 0.00 0.00 3.27
1435 1589 6.703165 GGTTTTAGGTCGTCTAGTTTTCTGAA 59.297 38.462 0.00 0.00 0.00 3.02
1436 1590 7.307042 GGTTTTAGGTCGTCTAGTTTTCTGAAC 60.307 40.741 0.00 0.00 0.00 3.18
1437 1591 6.645790 TTAGGTCGTCTAGTTTTCTGAACT 57.354 37.500 0.00 0.00 0.00 3.01
1438 1592 5.123805 AGGTCGTCTAGTTTTCTGAACTC 57.876 43.478 0.00 0.00 0.00 3.01
1439 1593 4.022155 AGGTCGTCTAGTTTTCTGAACTCC 60.022 45.833 0.00 0.00 0.00 3.85
1440 1594 4.236147 GTCGTCTAGTTTTCTGAACTCCC 58.764 47.826 0.00 0.00 0.00 4.30
1441 1595 3.057736 TCGTCTAGTTTTCTGAACTCCCG 60.058 47.826 0.00 0.00 0.00 5.14
1442 1596 3.057736 CGTCTAGTTTTCTGAACTCCCGA 60.058 47.826 0.00 0.00 0.00 5.14
1443 1597 4.487019 GTCTAGTTTTCTGAACTCCCGAG 58.513 47.826 0.00 0.00 0.00 4.63
1444 1598 4.022155 GTCTAGTTTTCTGAACTCCCGAGT 60.022 45.833 0.00 0.00 44.94 4.18
1445 1599 3.113260 AGTTTTCTGAACTCCCGAGTG 57.887 47.619 0.00 0.00 41.58 3.51
1446 1600 2.698797 AGTTTTCTGAACTCCCGAGTGA 59.301 45.455 0.00 0.00 41.58 3.41
1447 1601 3.325135 AGTTTTCTGAACTCCCGAGTGAT 59.675 43.478 0.00 0.00 41.58 3.06
1448 1602 4.527038 AGTTTTCTGAACTCCCGAGTGATA 59.473 41.667 0.00 0.00 41.58 2.15
1449 1603 5.187967 AGTTTTCTGAACTCCCGAGTGATAT 59.812 40.000 0.00 0.00 41.58 1.63
1450 1604 6.380274 AGTTTTCTGAACTCCCGAGTGATATA 59.620 38.462 0.00 0.00 41.58 0.86
1451 1605 6.978674 TTTCTGAACTCCCGAGTGATATAT 57.021 37.500 0.00 0.00 41.58 0.86
1452 1606 8.358148 GTTTTCTGAACTCCCGAGTGATATATA 58.642 37.037 0.00 0.00 41.58 0.86
1453 1607 8.651589 TTTCTGAACTCCCGAGTGATATATAT 57.348 34.615 0.00 0.00 41.58 0.86
1454 1608 9.749340 TTTCTGAACTCCCGAGTGATATATATA 57.251 33.333 0.00 0.00 41.58 0.86
1455 1609 9.922477 TTCTGAACTCCCGAGTGATATATATAT 57.078 33.333 4.86 4.86 41.58 0.86
1486 1640 4.851639 ATTACTCCTTGGAGTTCAGCAT 57.148 40.909 25.01 9.17 36.68 3.79
1488 1642 1.280421 ACTCCTTGGAGTTCAGCATCC 59.720 52.381 15.93 0.00 36.05 3.51
1500 1662 4.885907 AGTTCAGCATCCAGATAATTGGTG 59.114 41.667 0.00 0.00 39.35 4.17
1524 1686 2.917933 TGTTGACTTGAGTGGGACTTG 58.082 47.619 0.00 0.00 0.00 3.16
1601 1776 4.136796 TGAAGAAATGAGTGGACTTGGTG 58.863 43.478 0.00 0.00 0.00 4.17
1629 1804 3.900601 ACTAATTGTTTGGCCATGTGGAA 59.099 39.130 6.09 0.00 37.39 3.53
1647 1822 7.230849 TGTGGAAGATAATTGAACAAGCATT 57.769 32.000 0.00 0.00 0.00 3.56
1700 1875 8.677148 TTAGCTAAATCAAATCATGTACTCCC 57.323 34.615 2.97 0.00 0.00 4.30
1701 1876 6.904626 AGCTAAATCAAATCATGTACTCCCT 58.095 36.000 0.00 0.00 0.00 4.20
1702 1877 6.995091 AGCTAAATCAAATCATGTACTCCCTC 59.005 38.462 0.00 0.00 0.00 4.30
1703 1878 6.995091 GCTAAATCAAATCATGTACTCCCTCT 59.005 38.462 0.00 0.00 0.00 3.69
1704 1879 7.041508 GCTAAATCAAATCATGTACTCCCTCTG 60.042 40.741 0.00 0.00 0.00 3.35
1705 1880 5.965033 ATCAAATCATGTACTCCCTCTGT 57.035 39.130 0.00 0.00 0.00 3.41
1706 1881 7.437713 AATCAAATCATGTACTCCCTCTGTA 57.562 36.000 0.00 0.00 0.00 2.74
1707 1882 6.867519 TCAAATCATGTACTCCCTCTGTAA 57.132 37.500 0.00 0.00 0.00 2.41
1708 1883 7.252612 TCAAATCATGTACTCCCTCTGTAAA 57.747 36.000 0.00 0.00 0.00 2.01
1709 1884 7.103641 TCAAATCATGTACTCCCTCTGTAAAC 58.896 38.462 0.00 0.00 0.00 2.01
1710 1885 6.875972 AATCATGTACTCCCTCTGTAAACT 57.124 37.500 0.00 0.00 0.00 2.66
1711 1886 7.973048 AATCATGTACTCCCTCTGTAAACTA 57.027 36.000 0.00 0.00 0.00 2.24
1712 1887 7.973048 ATCATGTACTCCCTCTGTAAACTAA 57.027 36.000 0.00 0.00 0.00 2.24
1713 1888 7.973048 TCATGTACTCCCTCTGTAAACTAAT 57.027 36.000 0.00 0.00 0.00 1.73
1714 1889 9.656323 ATCATGTACTCCCTCTGTAAACTAATA 57.344 33.333 0.00 0.00 0.00 0.98
1715 1890 9.656323 TCATGTACTCCCTCTGTAAACTAATAT 57.344 33.333 0.00 0.00 0.00 1.28
1825 2000 8.030106 GGAGTATCGACCTAAGATTAATGGAAG 58.970 40.741 0.00 0.00 34.37 3.46
1826 2001 7.379750 AGTATCGACCTAAGATTAATGGAAGC 58.620 38.462 0.00 0.00 0.00 3.86
1827 2002 4.957296 TCGACCTAAGATTAATGGAAGCC 58.043 43.478 0.00 0.00 0.00 4.35
1828 2003 4.654262 TCGACCTAAGATTAATGGAAGCCT 59.346 41.667 0.00 0.00 0.00 4.58
1829 2004 4.752101 CGACCTAAGATTAATGGAAGCCTG 59.248 45.833 0.00 0.00 0.00 4.85
1831 2006 4.166919 ACCTAAGATTAATGGAAGCCTGCT 59.833 41.667 0.00 0.00 0.00 4.24
1832 2007 5.369699 ACCTAAGATTAATGGAAGCCTGCTA 59.630 40.000 0.00 0.00 0.00 3.49
1840 2015 8.666129 ATTAATGGAAGCCTGCTAGTATAGTA 57.334 34.615 0.00 0.00 41.93 1.82
1952 2132 0.610174 TCACAAGCTGGCTCTACTGG 59.390 55.000 0.00 0.00 0.00 4.00
1957 2137 0.631753 AGCTGGCTCTACTGGACCTA 59.368 55.000 0.00 0.00 0.00 3.08
1974 2154 9.170890 ACTGGACCTATCAAATAATTATCTGGA 57.829 33.333 0.00 0.00 0.00 3.86
2337 2529 3.327757 TGTTGGCTCTAGTTGAGTTCCAT 59.672 43.478 3.52 0.00 44.41 3.41
2338 2530 3.616956 TGGCTCTAGTTGAGTTCCATG 57.383 47.619 3.52 0.00 44.41 3.66
2340 2532 3.265791 GGCTCTAGTTGAGTTCCATGTG 58.734 50.000 3.52 0.00 44.41 3.21
2342 2534 4.563580 GGCTCTAGTTGAGTTCCATGTGAA 60.564 45.833 3.52 0.00 44.41 3.18
2346 2539 7.625185 GCTCTAGTTGAGTTCCATGTGAATTTC 60.625 40.741 3.52 0.00 44.41 2.17
2407 2601 6.071391 GCATCCTTAATCAGTTGGAAAGGAAA 60.071 38.462 6.23 0.00 46.44 3.13
2408 2602 7.364144 GCATCCTTAATCAGTTGGAAAGGAAAT 60.364 37.037 6.23 0.00 46.44 2.17
2409 2603 9.189156 CATCCTTAATCAGTTGGAAAGGAAATA 57.811 33.333 6.23 0.00 46.44 1.40
2412 2606 8.678199 CCTTAATCAGTTGGAAAGGAAATAGAC 58.322 37.037 0.00 0.00 39.26 2.59
2578 2772 2.203070 GCTCGTATGGCACCCCTG 60.203 66.667 0.00 0.00 0.00 4.45
2732 2926 1.621072 CCTTCCCTGTAGAGCCTCAGT 60.621 57.143 0.00 0.00 0.00 3.41
2904 3098 6.410621 CCAGTCCCTTCTACTAGTAGGTGTAT 60.411 46.154 26.06 7.40 31.55 2.29
2921 3115 7.625828 AGGTGTATTGTTAAGAACTAATGGC 57.374 36.000 0.00 0.00 0.00 4.40
2934 3128 1.942657 CTAATGGCGGATTGTCACCAG 59.057 52.381 0.00 0.00 32.94 4.00
3155 3353 2.561733 TAGGTTTCGTCGATGCTGAG 57.438 50.000 0.00 0.00 0.00 3.35
3277 3475 4.892934 TGGAACATCACTGTTTAAGCCTTT 59.107 37.500 0.00 0.00 45.57 3.11
3278 3476 5.362430 TGGAACATCACTGTTTAAGCCTTTT 59.638 36.000 0.00 0.00 45.57 2.27
3279 3477 6.547880 TGGAACATCACTGTTTAAGCCTTTTA 59.452 34.615 0.00 0.00 45.57 1.52
3389 3587 0.462759 GCAGAGGCTGGTGTCCATAC 60.463 60.000 0.00 0.00 36.96 2.39
3393 3591 0.905357 AGGCTGGTGTCCATACTGTC 59.095 55.000 0.00 0.00 30.82 3.51
3472 3670 6.369005 CGTCTCCAATTTCATTCATATCAGC 58.631 40.000 0.00 0.00 0.00 4.26
3487 3685 6.589135 TCATATCAGCTTGTCATGTGATCTT 58.411 36.000 0.00 0.00 32.01 2.40
3572 3771 7.983307 ACTCTGCATATGAAGAAGATGAAAAC 58.017 34.615 14.57 0.00 0.00 2.43
3577 3776 7.094848 TGCATATGAAGAAGATGAAAACGACAA 60.095 33.333 6.97 0.00 0.00 3.18
3579 3778 9.055248 CATATGAAGAAGATGAAAACGACAAAC 57.945 33.333 0.00 0.00 0.00 2.93
3583 3782 6.377327 AGAAGATGAAAACGACAAACATGT 57.623 33.333 0.00 0.00 0.00 3.21
3768 3985 0.034059 GAGTATCATGTCCCCTGCCG 59.966 60.000 0.00 0.00 33.17 5.69
3773 3990 1.195442 TCATGTCCCCTGCCGTAACA 61.195 55.000 0.00 0.00 0.00 2.41
4396 4638 1.626825 TGCTAGTTTGGAGGTGGTACC 59.373 52.381 4.43 4.43 38.99 3.34
4411 4653 4.028825 GTGGTACCTACATAGTCAGGGTT 58.971 47.826 14.36 0.00 36.15 4.11
4423 4665 3.816994 AGTCAGGGTTCCTTTGTTACAC 58.183 45.455 0.00 0.00 0.00 2.90
4424 4666 2.882761 GTCAGGGTTCCTTTGTTACACC 59.117 50.000 0.00 0.00 0.00 4.16
4426 4668 2.670019 GGGTTCCTTTGTTACACCCT 57.330 50.000 0.00 0.00 43.51 4.34
4427 4669 3.793819 GGGTTCCTTTGTTACACCCTA 57.206 47.619 0.00 0.00 43.51 3.53
4428 4670 4.311520 GGGTTCCTTTGTTACACCCTAT 57.688 45.455 0.00 0.00 43.51 2.57
4429 4671 4.669700 GGGTTCCTTTGTTACACCCTATT 58.330 43.478 0.00 0.00 43.51 1.73
4430 4672 4.461431 GGGTTCCTTTGTTACACCCTATTG 59.539 45.833 0.00 0.00 43.51 1.90
4602 5297 3.850752 TGGGCATTAAGGAACCTTTTCA 58.149 40.909 11.44 0.00 37.47 2.69
4683 5378 7.703621 ACAAATCTTGTCAATGAAAGAACACAG 59.296 33.333 10.31 4.71 40.56 3.66
4699 5396 6.170675 GAACACAGGTTCTACATGTCATTC 57.829 41.667 0.00 0.00 41.60 2.67
4701 5398 6.605471 ACACAGGTTCTACATGTCATTCTA 57.395 37.500 0.00 0.00 41.60 2.10
4811 5512 8.044908 ACTTGTAGGTAGAAACTCAAGAAACAA 58.955 33.333 9.21 0.00 35.26 2.83
5109 5811 1.142667 TCTTGAGTTGTGTCCATGGCA 59.857 47.619 6.96 5.76 0.00 4.92
5190 5892 3.517296 TTGTTGGCTGGGACTTGATAA 57.483 42.857 0.00 0.00 0.00 1.75
5211 5913 1.560505 GTGGTGCAAATGGAGGGAAT 58.439 50.000 0.00 0.00 0.00 3.01
5214 5916 2.311542 TGGTGCAAATGGAGGGAATACT 59.688 45.455 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.764314 GCCTTGCATACTGGCCGTG 61.764 63.158 10.01 2.39 40.71 4.94
1 2 2.438434 GCCTTGCATACTGGCCGT 60.438 61.111 0.00 1.25 40.71 5.68
4 5 1.338020 GTATTGGCCTTGCATACTGGC 59.662 52.381 3.32 10.76 45.42 4.85
5 6 1.956477 GGTATTGGCCTTGCATACTGG 59.044 52.381 3.32 0.00 0.00 4.00
6 7 2.620115 CAGGTATTGGCCTTGCATACTG 59.380 50.000 3.32 0.00 36.58 2.74
7 8 2.509548 TCAGGTATTGGCCTTGCATACT 59.490 45.455 3.32 0.00 36.58 2.12
8 9 2.930950 TCAGGTATTGGCCTTGCATAC 58.069 47.619 3.32 5.42 36.58 2.39
9 10 3.554934 CTTCAGGTATTGGCCTTGCATA 58.445 45.455 3.32 0.00 36.58 3.14
10 11 2.381911 CTTCAGGTATTGGCCTTGCAT 58.618 47.619 3.32 0.00 36.58 3.96
11 12 1.838112 CTTCAGGTATTGGCCTTGCA 58.162 50.000 3.32 0.00 36.58 4.08
12 13 0.457443 GCTTCAGGTATTGGCCTTGC 59.543 55.000 3.32 0.00 36.58 4.01
13 14 2.134789 AGCTTCAGGTATTGGCCTTG 57.865 50.000 3.32 0.00 36.58 3.61
14 15 3.372025 CCTTAGCTTCAGGTATTGGCCTT 60.372 47.826 3.32 0.00 36.58 4.35
15 16 2.173569 CCTTAGCTTCAGGTATTGGCCT 59.826 50.000 3.32 0.00 39.99 5.19
16 17 2.172717 TCCTTAGCTTCAGGTATTGGCC 59.827 50.000 10.66 0.00 32.59 5.36
17 18 3.471680 CTCCTTAGCTTCAGGTATTGGC 58.528 50.000 10.66 0.00 32.59 4.52
18 19 3.456277 ACCTCCTTAGCTTCAGGTATTGG 59.544 47.826 10.66 10.77 37.50 3.16
19 20 4.698575 GACCTCCTTAGCTTCAGGTATTG 58.301 47.826 10.66 2.71 39.49 1.90
20 21 3.385111 CGACCTCCTTAGCTTCAGGTATT 59.615 47.826 10.66 0.00 39.49 1.89
21 22 2.959707 CGACCTCCTTAGCTTCAGGTAT 59.040 50.000 10.66 0.00 39.49 2.73
22 23 2.025605 TCGACCTCCTTAGCTTCAGGTA 60.026 50.000 10.66 0.00 39.49 3.08
23 24 1.187087 CGACCTCCTTAGCTTCAGGT 58.813 55.000 10.66 8.10 42.24 4.00
24 25 1.475403 TCGACCTCCTTAGCTTCAGG 58.525 55.000 5.43 5.43 0.00 3.86
25 26 2.801342 GCATCGACCTCCTTAGCTTCAG 60.801 54.545 0.00 0.00 0.00 3.02
26 27 1.137086 GCATCGACCTCCTTAGCTTCA 59.863 52.381 0.00 0.00 0.00 3.02
27 28 1.137086 TGCATCGACCTCCTTAGCTTC 59.863 52.381 0.00 0.00 0.00 3.86
28 29 1.195115 TGCATCGACCTCCTTAGCTT 58.805 50.000 0.00 0.00 0.00 3.74
29 30 1.342819 GATGCATCGACCTCCTTAGCT 59.657 52.381 11.68 0.00 0.00 3.32
30 31 1.069204 TGATGCATCGACCTCCTTAGC 59.931 52.381 21.34 0.00 0.00 3.09
31 32 3.674528 ATGATGCATCGACCTCCTTAG 57.325 47.619 21.34 0.00 0.00 2.18
32 33 3.732212 CAATGATGCATCGACCTCCTTA 58.268 45.455 21.34 1.06 0.00 2.69
33 34 2.569059 CAATGATGCATCGACCTCCTT 58.431 47.619 21.34 3.98 0.00 3.36
34 35 2.251409 CAATGATGCATCGACCTCCT 57.749 50.000 21.34 0.00 0.00 3.69
46 47 2.428925 GGCCCTGGGTGCAATGATG 61.429 63.158 15.56 0.00 0.00 3.07
47 48 2.042639 GGCCCTGGGTGCAATGAT 60.043 61.111 15.56 0.00 0.00 2.45
48 49 3.588511 TGGCCCTGGGTGCAATGA 61.589 61.111 15.56 0.00 0.00 2.57
49 50 2.497792 TAGTGGCCCTGGGTGCAATG 62.498 60.000 15.56 0.00 0.00 2.82
50 51 2.237965 TAGTGGCCCTGGGTGCAAT 61.238 57.895 15.56 0.00 0.00 3.56
51 52 2.856494 TAGTGGCCCTGGGTGCAA 60.856 61.111 15.56 0.00 0.00 4.08
52 53 3.646715 GTAGTGGCCCTGGGTGCA 61.647 66.667 15.56 0.00 0.00 4.57
53 54 4.426313 GGTAGTGGCCCTGGGTGC 62.426 72.222 15.56 4.94 0.00 5.01
54 55 2.933287 TGGTAGTGGCCCTGGGTG 60.933 66.667 15.56 0.00 0.00 4.61
55 56 2.933834 GTGGTAGTGGCCCTGGGT 60.934 66.667 15.56 0.00 0.00 4.51
56 57 4.096003 CGTGGTAGTGGCCCTGGG 62.096 72.222 8.86 8.86 0.00 4.45
57 58 4.096003 CCGTGGTAGTGGCCCTGG 62.096 72.222 0.00 0.00 0.00 4.45
58 59 4.778143 GCCGTGGTAGTGGCCCTG 62.778 72.222 0.00 0.00 45.73 4.45
63 64 0.806102 CATCGAAGCCGTGGTAGTGG 60.806 60.000 0.00 0.00 37.05 4.00
64 65 1.421410 GCATCGAAGCCGTGGTAGTG 61.421 60.000 0.00 0.00 37.05 2.74
65 66 1.153628 GCATCGAAGCCGTGGTAGT 60.154 57.895 0.00 0.00 37.05 2.73
66 67 0.460284 AAGCATCGAAGCCGTGGTAG 60.460 55.000 9.36 0.00 37.05 3.18
67 68 0.459585 GAAGCATCGAAGCCGTGGTA 60.460 55.000 9.36 0.00 37.05 3.25
68 69 1.741770 GAAGCATCGAAGCCGTGGT 60.742 57.895 9.36 0.00 37.05 4.16
69 70 3.093278 GAAGCATCGAAGCCGTGG 58.907 61.111 9.36 0.00 37.05 4.94
85 86 1.954146 GTCTTGCTCCAACGCACGA 60.954 57.895 0.00 0.00 40.09 4.35
87 88 0.593128 ATTGTCTTGCTCCAACGCAC 59.407 50.000 0.00 0.00 40.09 5.34
92 93 1.202915 TGCCTCATTGTCTTGCTCCAA 60.203 47.619 0.00 0.00 0.00 3.53
98 99 3.367703 GGTGGAAATGCCTCATTGTCTTG 60.368 47.826 0.00 0.00 34.04 3.02
100 101 2.450476 GGTGGAAATGCCTCATTGTCT 58.550 47.619 0.00 0.00 34.04 3.41
102 103 1.560505 GGGTGGAAATGCCTCATTGT 58.439 50.000 0.00 0.00 34.04 2.71
106 107 1.442886 AAGGGGGTGGAAATGCCTCA 61.443 55.000 0.00 0.00 37.63 3.86
108 109 1.388133 GAAGGGGGTGGAAATGCCT 59.612 57.895 0.00 0.00 37.63 4.75
115 116 0.976073 CTTCTAGCGAAGGGGGTGGA 60.976 60.000 0.00 0.00 42.35 4.02
118 119 2.368011 GGCTTCTAGCGAAGGGGGT 61.368 63.158 3.90 0.00 45.41 4.95
120 121 1.602237 TTGGCTTCTAGCGAAGGGG 59.398 57.895 3.90 0.00 45.41 4.79
125 126 1.740380 GCATCACTTGGCTTCTAGCGA 60.740 52.381 0.00 0.00 43.62 4.93
126 127 0.654683 GCATCACTTGGCTTCTAGCG 59.345 55.000 0.00 0.00 43.62 4.26
127 128 1.399791 GTGCATCACTTGGCTTCTAGC 59.600 52.381 0.00 0.00 41.46 3.42
128 129 2.012673 GGTGCATCACTTGGCTTCTAG 58.987 52.381 0.00 0.00 34.40 2.43
129 130 1.350684 TGGTGCATCACTTGGCTTCTA 59.649 47.619 0.00 0.00 34.40 2.10
130 131 0.111061 TGGTGCATCACTTGGCTTCT 59.889 50.000 0.00 0.00 34.40 2.85
131 132 0.242017 GTGGTGCATCACTTGGCTTC 59.758 55.000 23.02 0.00 34.40 3.86
133 134 0.892358 CAGTGGTGCATCACTTGGCT 60.892 55.000 29.93 6.41 44.74 4.75
134 135 1.582968 CAGTGGTGCATCACTTGGC 59.417 57.895 29.93 2.73 44.74 4.52
136 137 0.892358 AGCCAGTGGTGCATCACTTG 60.892 55.000 29.93 26.37 44.74 3.16
137 138 0.607489 GAGCCAGTGGTGCATCACTT 60.607 55.000 29.93 16.32 44.74 3.16
150 151 2.681778 ACCACCCGAGAGAGCCAG 60.682 66.667 0.00 0.00 0.00 4.85
154 155 2.362369 ATGCCACCACCCGAGAGAG 61.362 63.158 0.00 0.00 0.00 3.20
155 156 2.284625 ATGCCACCACCCGAGAGA 60.285 61.111 0.00 0.00 0.00 3.10
156 157 2.124983 CATGCCACCACCCGAGAG 60.125 66.667 0.00 0.00 0.00 3.20
157 158 3.716195 CCATGCCACCACCCGAGA 61.716 66.667 0.00 0.00 0.00 4.04
161 162 2.843912 CTTCCTCCATGCCACCACCC 62.844 65.000 0.00 0.00 0.00 4.61
172 173 3.251484 ACTTTCCACATCTCTTCCTCCA 58.749 45.455 0.00 0.00 0.00 3.86
174 175 4.141824 CCCTACTTTCCACATCTCTTCCTC 60.142 50.000 0.00 0.00 0.00 3.71
177 178 3.775316 TCCCCTACTTTCCACATCTCTTC 59.225 47.826 0.00 0.00 0.00 2.87
179 180 3.491766 TCCCCTACTTTCCACATCTCT 57.508 47.619 0.00 0.00 0.00 3.10
180 181 4.164221 TCAATCCCCTACTTTCCACATCTC 59.836 45.833 0.00 0.00 0.00 2.75
181 182 4.080299 GTCAATCCCCTACTTTCCACATCT 60.080 45.833 0.00 0.00 0.00 2.90
182 183 4.080299 AGTCAATCCCCTACTTTCCACATC 60.080 45.833 0.00 0.00 0.00 3.06
183 184 3.852578 AGTCAATCCCCTACTTTCCACAT 59.147 43.478 0.00 0.00 0.00 3.21
184 185 3.009033 CAGTCAATCCCCTACTTTCCACA 59.991 47.826 0.00 0.00 0.00 4.17
186 187 2.026262 GCAGTCAATCCCCTACTTTCCA 60.026 50.000 0.00 0.00 0.00 3.53
188 189 3.636153 AGCAGTCAATCCCCTACTTTC 57.364 47.619 0.00 0.00 0.00 2.62
194 201 1.972588 ACCTTAGCAGTCAATCCCCT 58.027 50.000 0.00 0.00 0.00 4.79
203 210 0.539669 GGTGCCCAAACCTTAGCAGT 60.540 55.000 0.00 0.00 37.24 4.40
204 211 1.250840 GGGTGCCCAAACCTTAGCAG 61.251 60.000 1.66 0.00 40.35 4.24
207 214 0.611896 CCAGGGTGCCCAAACCTTAG 60.612 60.000 10.26 0.00 40.35 2.18
208 215 1.068943 TCCAGGGTGCCCAAACCTTA 61.069 55.000 10.26 0.00 40.35 2.69
210 217 2.780924 TCCAGGGTGCCCAAACCT 60.781 61.111 10.26 0.00 40.35 3.50
216 223 0.967380 CAATTGACTCCAGGGTGCCC 60.967 60.000 0.00 0.00 0.00 5.36
218 225 0.895100 TGCAATTGACTCCAGGGTGC 60.895 55.000 10.34 0.00 0.00 5.01
225 232 2.583472 CCCCCTTGCAATTGACTCC 58.417 57.895 10.34 0.00 0.00 3.85
244 251 0.319641 ACTTCGTCTCCCTCGTTTGC 60.320 55.000 0.00 0.00 0.00 3.68
245 252 1.419374 CACTTCGTCTCCCTCGTTTG 58.581 55.000 0.00 0.00 0.00 2.93
247 254 0.826672 ACCACTTCGTCTCCCTCGTT 60.827 55.000 0.00 0.00 0.00 3.85
252 259 3.324117 GAACTAAACCACTTCGTCTCCC 58.676 50.000 0.00 0.00 0.00 4.30
255 262 2.624838 TCGGAACTAAACCACTTCGTCT 59.375 45.455 0.00 0.00 0.00 4.18
259 266 6.308371 TGATTTTCGGAACTAAACCACTTC 57.692 37.500 0.00 0.00 0.00 3.01
260 267 6.702716 TTGATTTTCGGAACTAAACCACTT 57.297 33.333 0.00 0.00 0.00 3.16
261 268 6.702716 TTTGATTTTCGGAACTAAACCACT 57.297 33.333 0.00 0.00 0.00 4.00
275 282 8.846943 ATGGACCAAACCTTATTTTGATTTTC 57.153 30.769 0.00 0.00 38.54 2.29
280 287 6.154363 GGATGATGGACCAAACCTTATTTTGA 59.846 38.462 0.00 0.00 38.54 2.69
303 310 4.163427 AGAGATGTCAGGAAACTCAAGGA 58.837 43.478 0.00 0.00 40.21 3.36
306 313 3.826729 TCGAGAGATGTCAGGAAACTCAA 59.173 43.478 0.00 0.00 33.72 3.02
316 323 4.743057 ATGGATTTGTCGAGAGATGTCA 57.257 40.909 0.00 0.00 45.19 3.58
320 327 7.330454 CGATGATTTATGGATTTGTCGAGAGAT 59.670 37.037 0.00 0.00 45.19 2.75
323 330 6.420903 GTCGATGATTTATGGATTTGTCGAGA 59.579 38.462 0.00 0.00 36.43 4.04
324 331 6.346919 GGTCGATGATTTATGGATTTGTCGAG 60.347 42.308 0.00 0.00 36.43 4.04
329 336 6.866010 TGAGGTCGATGATTTATGGATTTG 57.134 37.500 0.00 0.00 0.00 2.32
337 345 7.680442 TTGTTTGATTGAGGTCGATGATTTA 57.320 32.000 0.00 0.00 0.00 1.40
338 346 6.573664 TTGTTTGATTGAGGTCGATGATTT 57.426 33.333 0.00 0.00 0.00 2.17
339 347 6.573664 TTTGTTTGATTGAGGTCGATGATT 57.426 33.333 0.00 0.00 0.00 2.57
346 354 8.647143 TCAGAAATTTTTGTTTGATTGAGGTC 57.353 30.769 8.43 0.00 0.00 3.85
360 368 6.809869 AGTGCTAAACTGCTCAGAAATTTTT 58.190 32.000 3.60 0.00 37.88 1.94
375 383 5.959618 AATAAACCCTGTCAGTGCTAAAC 57.040 39.130 0.00 0.00 0.00 2.01
377 385 6.537301 CGATAAATAAACCCTGTCAGTGCTAA 59.463 38.462 0.00 0.00 0.00 3.09
378 386 6.046593 CGATAAATAAACCCTGTCAGTGCTA 58.953 40.000 0.00 0.00 0.00 3.49
379 387 4.876107 CGATAAATAAACCCTGTCAGTGCT 59.124 41.667 0.00 0.00 0.00 4.40
380 388 4.634443 ACGATAAATAAACCCTGTCAGTGC 59.366 41.667 0.00 0.00 0.00 4.40
382 390 8.146412 GGTATACGATAAATAAACCCTGTCAGT 58.854 37.037 0.00 0.00 0.00 3.41
406 414 9.705290 AAAATGTTATATTTGAAAAGAAGCGGT 57.295 25.926 0.00 0.00 0.00 5.68
436 444 7.983484 TCCGATTAACTAAAGATTAGGTGGTTC 59.017 37.037 0.00 0.00 0.00 3.62
437 445 7.767659 GTCCGATTAACTAAAGATTAGGTGGTT 59.232 37.037 0.00 0.00 0.00 3.67
440 448 8.943909 AAGTCCGATTAACTAAAGATTAGGTG 57.056 34.615 0.00 0.00 0.00 4.00
467 478 1.452801 GGACCGACTGGAACCCAAA 59.547 57.895 0.00 0.00 39.21 3.28
469 480 2.926242 GGGACCGACTGGAACCCA 60.926 66.667 13.33 0.00 46.63 4.51
471 482 1.605971 GAGAGGGACCGACTGGAACC 61.606 65.000 0.00 0.00 39.21 3.62
475 486 2.115911 CGAGAGAGGGACCGACTGG 61.116 68.421 0.00 0.00 42.84 4.00
478 489 0.814812 CCTACGAGAGAGGGACCGAC 60.815 65.000 0.00 0.00 0.00 4.79
479 490 1.525923 CCTACGAGAGAGGGACCGA 59.474 63.158 0.00 0.00 0.00 4.69
493 504 1.498264 GGGGAGGAGAAGAACCCTAC 58.502 60.000 0.00 0.00 41.79 3.18
496 507 3.742730 GGGGGAGGAGAAGAACCC 58.257 66.667 0.00 0.00 41.41 4.11
513 524 3.528370 CGGACTGGGTCGGCTAGG 61.528 72.222 0.00 0.00 32.65 3.02
519 530 3.622060 ATTTGGCCGGACTGGGTCG 62.622 63.158 9.82 0.00 38.63 4.79
520 531 1.749258 GATTTGGCCGGACTGGGTC 60.749 63.158 9.82 0.00 38.63 4.46
521 532 2.355115 GATTTGGCCGGACTGGGT 59.645 61.111 9.82 0.00 38.63 4.51
522 533 2.824041 CGATTTGGCCGGACTGGG 60.824 66.667 9.82 0.00 38.63 4.45
523 534 3.508840 GCGATTTGGCCGGACTGG 61.509 66.667 9.82 0.00 42.50 4.00
524 535 3.508840 GGCGATTTGGCCGGACTG 61.509 66.667 9.82 0.00 44.40 3.51
557 569 2.126307 CTGTGAGGCGAGGTGACG 60.126 66.667 0.00 0.00 0.00 4.35
580 592 0.318120 AAAACGGCTCATGGGCAAAG 59.682 50.000 21.47 12.54 40.90 2.77
582 594 0.539438 AGAAAACGGCTCATGGGCAA 60.539 50.000 21.47 0.00 40.90 4.52
583 595 0.960364 GAGAAAACGGCTCATGGGCA 60.960 55.000 21.47 0.00 40.90 5.36
584 596 1.657751 GGAGAAAACGGCTCATGGGC 61.658 60.000 9.80 9.80 34.07 5.36
585 597 1.369091 CGGAGAAAACGGCTCATGGG 61.369 60.000 0.00 0.00 34.07 4.00
586 598 1.982073 GCGGAGAAAACGGCTCATGG 61.982 60.000 0.00 0.00 34.07 3.66
587 599 1.425428 GCGGAGAAAACGGCTCATG 59.575 57.895 0.00 0.00 34.07 3.07
588 600 3.890674 GCGGAGAAAACGGCTCAT 58.109 55.556 0.00 0.00 34.07 2.90
607 619 4.439901 AGAGGGGGAAGGGGGCTC 62.440 72.222 0.00 0.00 0.00 4.70
615 627 1.299648 CAATGTGCGAGAGGGGGAA 59.700 57.895 0.00 0.00 0.00 3.97
642 655 2.285368 TGCGGGAGGGGTTCATCT 60.285 61.111 0.00 0.00 0.00 2.90
697 713 3.096092 GCAAAACATGGAGGTTGGGATA 58.904 45.455 0.00 0.00 0.00 2.59
766 796 6.749139 AGAAAAACTTTGCACTTCCTATTCC 58.251 36.000 0.00 0.00 0.00 3.01
813 844 9.955208 GGAGATTCCTTCGTTTTAACTTTTAAA 57.045 29.630 0.00 0.00 32.53 1.52
815 846 7.656948 TCGGAGATTCCTTCGTTTTAACTTTTA 59.343 33.333 0.00 0.00 42.03 1.52
816 847 6.484308 TCGGAGATTCCTTCGTTTTAACTTTT 59.516 34.615 0.00 0.00 42.03 2.27
817 848 5.993441 TCGGAGATTCCTTCGTTTTAACTTT 59.007 36.000 0.00 0.00 42.03 2.66
818 849 5.544650 TCGGAGATTCCTTCGTTTTAACTT 58.455 37.500 0.00 0.00 42.03 2.66
819 850 5.047519 TCTCGGAGATTCCTTCGTTTTAACT 60.048 40.000 2.97 0.00 42.03 2.24
820 851 5.166398 TCTCGGAGATTCCTTCGTTTTAAC 58.834 41.667 2.97 0.00 42.03 2.01
842 873 2.939103 GCACTCTGTCTCTCTCTCTCTC 59.061 54.545 0.00 0.00 0.00 3.20
843 874 2.305635 TGCACTCTGTCTCTCTCTCTCT 59.694 50.000 0.00 0.00 0.00 3.10
844 875 2.420022 GTGCACTCTGTCTCTCTCTCTC 59.580 54.545 10.32 0.00 0.00 3.20
845 876 2.224744 TGTGCACTCTGTCTCTCTCTCT 60.225 50.000 19.41 0.00 0.00 3.10
850 881 0.732196 CGCTGTGCACTCTGTCTCTC 60.732 60.000 19.41 0.00 0.00 3.20
881 912 3.861840 TGTATTCTAGTGGACTGCAAGC 58.138 45.455 0.00 0.00 37.60 4.01
948 997 0.552848 AGGAGAGGAGAGGAGAGCTG 59.447 60.000 0.00 0.00 0.00 4.24
952 1001 1.010793 AGGAGAGGAGAGGAGAGGAGA 59.989 57.143 0.00 0.00 0.00 3.71
953 1002 1.421646 GAGGAGAGGAGAGGAGAGGAG 59.578 61.905 0.00 0.00 0.00 3.69
1402 1553 2.985139 GACGACCTAAAACCAAGTCTCG 59.015 50.000 0.00 0.00 0.00 4.04
1404 1555 4.831710 ACTAGACGACCTAAAACCAAGTCT 59.168 41.667 0.00 0.91 40.16 3.24
1437 1591 9.702494 CGTACAGTATATATATATCACTCGGGA 57.298 37.037 8.55 0.00 0.00 5.14
1438 1592 9.486497 ACGTACAGTATATATATATCACTCGGG 57.514 37.037 8.55 3.75 0.00 5.14
1452 1606 9.228949 CTCCAAGGAGTAATACGTACAGTATAT 57.771 37.037 7.98 5.14 39.80 0.86
1453 1607 8.613060 CTCCAAGGAGTAATACGTACAGTATA 57.387 38.462 7.98 0.00 39.80 1.47
1454 1608 7.507733 CTCCAAGGAGTAATACGTACAGTAT 57.492 40.000 7.98 0.00 41.01 2.12
1455 1609 6.932356 CTCCAAGGAGTAATACGTACAGTA 57.068 41.667 7.98 0.00 37.31 2.74
1456 1610 5.831702 CTCCAAGGAGTAATACGTACAGT 57.168 43.478 7.98 0.00 37.47 3.55
1475 1629 4.518211 CCAATTATCTGGATGCTGAACTCC 59.482 45.833 0.00 0.00 38.96 3.85
1486 1640 5.822519 GTCAACATAGCACCAATTATCTGGA 59.177 40.000 0.00 0.00 38.96 3.86
1488 1642 6.932356 AGTCAACATAGCACCAATTATCTG 57.068 37.500 0.00 0.00 0.00 2.90
1500 1662 3.003480 GTCCCACTCAAGTCAACATAGC 58.997 50.000 0.00 0.00 0.00 2.97
1524 1686 0.038251 GCCTTAGCCAAGCAAACACC 60.038 55.000 0.00 0.00 0.00 4.16
1601 1776 3.924144 TGGCCAAACAATTAGTGCATTC 58.076 40.909 0.61 0.00 0.00 2.67
1783 1958 9.012161 GTCGATACTCCCTCTGTAAACTAATAT 57.988 37.037 0.00 0.00 0.00 1.28
1784 1959 7.446625 GGTCGATACTCCCTCTGTAAACTAATA 59.553 40.741 0.00 0.00 0.00 0.98
1785 1960 6.264970 GGTCGATACTCCCTCTGTAAACTAAT 59.735 42.308 0.00 0.00 0.00 1.73
1786 1961 5.591877 GGTCGATACTCCCTCTGTAAACTAA 59.408 44.000 0.00 0.00 0.00 2.24
1787 1962 5.104193 AGGTCGATACTCCCTCTGTAAACTA 60.104 44.000 0.00 0.00 0.00 2.24
1788 1963 3.952967 GGTCGATACTCCCTCTGTAAACT 59.047 47.826 0.00 0.00 0.00 2.66
1789 1964 3.952967 AGGTCGATACTCCCTCTGTAAAC 59.047 47.826 0.00 0.00 0.00 2.01
1790 1965 4.246712 AGGTCGATACTCCCTCTGTAAA 57.753 45.455 0.00 0.00 0.00 2.01
1791 1966 3.947612 AGGTCGATACTCCCTCTGTAA 57.052 47.619 0.00 0.00 0.00 2.41
1792 1967 4.657504 TCTTAGGTCGATACTCCCTCTGTA 59.342 45.833 0.00 0.00 0.00 2.74
1793 1968 3.458857 TCTTAGGTCGATACTCCCTCTGT 59.541 47.826 0.00 0.00 0.00 3.41
1794 1969 4.088056 TCTTAGGTCGATACTCCCTCTG 57.912 50.000 0.00 0.00 0.00 3.35
1795 1970 5.327737 AATCTTAGGTCGATACTCCCTCT 57.672 43.478 0.00 0.00 0.00 3.69
1796 1971 7.363094 CCATTAATCTTAGGTCGATACTCCCTC 60.363 44.444 0.00 0.00 0.00 4.30
1797 1972 6.437793 CCATTAATCTTAGGTCGATACTCCCT 59.562 42.308 0.00 0.00 0.00 4.20
1798 1973 6.436532 TCCATTAATCTTAGGTCGATACTCCC 59.563 42.308 0.00 0.00 0.00 4.30
1799 1974 7.463961 TCCATTAATCTTAGGTCGATACTCC 57.536 40.000 0.00 0.00 0.00 3.85
1800 1975 7.542824 GCTTCCATTAATCTTAGGTCGATACTC 59.457 40.741 0.00 0.00 0.00 2.59
1801 1976 7.379750 GCTTCCATTAATCTTAGGTCGATACT 58.620 38.462 0.00 0.00 0.00 2.12
1802 1977 6.590677 GGCTTCCATTAATCTTAGGTCGATAC 59.409 42.308 0.00 0.00 0.00 2.24
1803 1978 6.497259 AGGCTTCCATTAATCTTAGGTCGATA 59.503 38.462 0.00 0.00 0.00 2.92
1825 2000 3.673594 CGTGCCATACTATACTAGCAGGC 60.674 52.174 0.00 0.00 39.36 4.85
1826 2001 3.119459 CCGTGCCATACTATACTAGCAGG 60.119 52.174 0.00 0.00 36.25 4.85
1827 2002 3.506455 ACCGTGCCATACTATACTAGCAG 59.494 47.826 0.00 0.00 0.00 4.24
1828 2003 3.493334 ACCGTGCCATACTATACTAGCA 58.507 45.455 0.00 0.00 0.00 3.49
1829 2004 4.217983 AGAACCGTGCCATACTATACTAGC 59.782 45.833 0.00 0.00 0.00 3.42
1831 2006 6.066690 AGAAGAACCGTGCCATACTATACTA 58.933 40.000 0.00 0.00 0.00 1.82
1832 2007 4.894114 AGAAGAACCGTGCCATACTATACT 59.106 41.667 0.00 0.00 0.00 2.12
1840 2015 2.568623 AAAGAGAAGAACCGTGCCAT 57.431 45.000 0.00 0.00 0.00 4.40
1921 2101 3.755378 CCAGCTTGTGAAGTATTTGCTCT 59.245 43.478 0.00 0.00 0.00 4.09
1971 2151 3.788142 AGAAGGCCTCTTATTTGGATCCA 59.212 43.478 11.44 11.44 32.52 3.41
1974 2154 5.192522 TCAGAAGAAGGCCTCTTATTTGGAT 59.807 40.000 5.23 0.00 44.82 3.41
2271 2463 3.678289 TGTCCATGTGTCAAATGAGGAG 58.322 45.455 4.41 0.00 0.00 3.69
2337 2529 7.620880 AGGTATGTAGTGCTTAGAAATTCACA 58.379 34.615 0.00 0.00 32.25 3.58
2338 2530 9.765795 ATAGGTATGTAGTGCTTAGAAATTCAC 57.234 33.333 0.00 0.00 0.00 3.18
2340 2532 9.765795 ACATAGGTATGTAGTGCTTAGAAATTC 57.234 33.333 0.56 0.00 44.54 2.17
2381 2575 4.706476 CCTTTCCAACTGATTAAGGATGCA 59.294 41.667 0.00 0.00 38.05 3.96
2443 2637 5.357878 TCTGCAGTAAAATCATGGAATGTCC 59.642 40.000 14.67 0.00 46.80 4.02
2450 2644 7.912250 GTCAAATAGTCTGCAGTAAAATCATGG 59.088 37.037 14.67 0.00 0.00 3.66
2518 2712 1.480954 GCAACCGAGTCAAGGGAGATA 59.519 52.381 0.00 0.00 0.00 1.98
2578 2772 3.787634 CAGCATTGTTGATCAATACGTGC 59.212 43.478 23.16 23.16 43.93 5.34
2732 2926 7.561251 TCTTCATATCCATCCTTCGTAAAACA 58.439 34.615 0.00 0.00 0.00 2.83
2904 3098 5.708230 ACAATCCGCCATTAGTTCTTAACAA 59.292 36.000 0.00 0.00 0.00 2.83
2915 3109 1.408127 CCTGGTGACAATCCGCCATTA 60.408 52.381 0.00 0.00 44.74 1.90
2921 3115 1.300971 CTGCACCTGGTGACAATCCG 61.301 60.000 30.23 11.32 42.06 4.18
2934 3128 6.314400 TGGTCGTAATAATAGAAAACTGCACC 59.686 38.462 0.00 0.00 0.00 5.01
3027 3222 8.786826 ACATTAGGACAGTGATTCGAAAATTA 57.213 30.769 0.00 0.00 0.00 1.40
3037 3232 5.044919 TCCCAATTGACATTAGGACAGTGAT 60.045 40.000 7.12 0.00 26.13 3.06
3155 3353 6.205658 GCTTTCCAGATGTAAGGTTCATATCC 59.794 42.308 0.00 0.00 0.00 2.59
3389 3587 1.595882 CCAGGAGAGGCACAGACAG 59.404 63.158 0.00 0.00 0.00 3.51
3393 3591 0.107312 CAATCCCAGGAGAGGCACAG 60.107 60.000 0.00 0.00 0.00 3.66
3447 3645 6.567321 GCTGATATGAATGAAATTGGAGACGG 60.567 42.308 0.00 0.00 36.07 4.79
3472 3670 9.681692 TGAAACAAAATAAGATCACATGACAAG 57.318 29.630 0.00 0.00 0.00 3.16
3544 3743 9.842775 TTTCATCTTCTTCATATGCAGAGTAAT 57.157 29.630 5.21 0.00 0.00 1.89
3577 3776 6.876789 TGTCGGTAAACATCTTATGACATGTT 59.123 34.615 0.00 0.00 43.61 2.71
3579 3778 6.902224 TGTCGGTAAACATCTTATGACATG 57.098 37.500 0.00 0.00 30.82 3.21
3583 3782 5.129650 TCCCATGTCGGTAAACATCTTATGA 59.870 40.000 0.00 0.00 37.78 2.15
3768 3985 8.494016 AATTAGCAATAGGAACTGTCTGTTAC 57.506 34.615 0.00 0.00 41.52 2.50
3773 3990 9.771534 GATAAGAATTAGCAATAGGAACTGTCT 57.228 33.333 0.00 0.00 36.52 3.41
4269 4505 0.249398 GACCATACCGGCACTGAACT 59.751 55.000 0.00 0.00 39.03 3.01
4356 4598 8.748412 ACTAGCAAATTAACAGCAAATTGGATA 58.252 29.630 0.00 0.00 0.00 2.59
4396 4638 5.422214 ACAAAGGAACCCTGACTATGTAG 57.578 43.478 0.00 0.00 32.13 2.74
4411 4653 5.310068 TGGTACAATAGGGTGTAACAAAGGA 59.690 40.000 0.70 0.00 46.21 3.36
4518 5207 5.500645 AAACTCTACAGTTCTTTTGCCAC 57.499 39.130 0.00 0.00 42.45 5.01
4554 5243 8.629158 AGCAGTACAACAATGACAAGAAAATTA 58.371 29.630 0.00 0.00 0.00 1.40
4811 5512 5.714333 TGTTATGTATGGAATTGCACTGGTT 59.286 36.000 0.12 0.00 0.00 3.67
5088 5790 1.537202 GCCATGGACACAACTCAAGAC 59.463 52.381 18.40 0.00 0.00 3.01
5190 5892 1.077265 CCCTCCATTTGCACCACCT 59.923 57.895 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.