Multiple sequence alignment - TraesCS6D01G051300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G051300 chr6D 100.000 8448 0 0 1 8448 24438346 24446793 0.000000e+00 15601.0
1 TraesCS6D01G051300 chr6D 78.323 775 83 33 11 718 24361467 24360711 1.010000e-113 422.0
2 TraesCS6D01G051300 chr6D 88.372 172 13 2 3777 3948 409773843 409774007 5.170000e-47 200.0
3 TraesCS6D01G051300 chr6D 91.589 107 5 3 674 777 379851253 379851148 2.460000e-30 145.0
4 TraesCS6D01G051300 chr6D 94.318 88 5 0 46 133 24321915 24321828 1.480000e-27 135.0
5 TraesCS6D01G051300 chr6D 94.318 88 5 0 46 133 24353610 24353523 1.480000e-27 135.0
6 TraesCS6D01G051300 chr6D 94.318 88 5 0 46 133 24406751 24406838 1.480000e-27 135.0
7 TraesCS6D01G051300 chr6D 89.524 105 9 2 669 773 17887823 17887721 1.910000e-26 132.0
8 TraesCS6D01G051300 chr6D 75.221 226 49 3 7947 8165 151613905 151614130 5.400000e-17 100.0
9 TraesCS6D01G051300 chr6D 73.643 258 59 5 7947 8196 157625187 157624931 3.250000e-14 91.6
10 TraesCS6D01G051300 chr6B 93.320 4536 203 45 3947 8446 39762261 39766732 0.000000e+00 6606.0
11 TraesCS6D01G051300 chr6B 89.851 3281 262 40 540 3780 39759013 39762262 0.000000e+00 4148.0
12 TraesCS6D01G051300 chr6B 88.115 244 15 7 8117 8358 40076994 40077225 2.320000e-70 278.0
13 TraesCS6D01G051300 chr6B 87.647 170 13 4 3779 3948 702430999 702430838 3.110000e-44 191.0
14 TraesCS6D01G051300 chr6B 89.815 108 6 3 674 781 30957448 30957550 5.320000e-27 134.0
15 TraesCS6D01G051300 chr6A 93.936 3199 145 25 4260 7434 23436160 23432987 0.000000e+00 4787.0
16 TraesCS6D01G051300 chr6A 87.406 2914 272 43 930 3780 23439447 23436566 0.000000e+00 3260.0
17 TraesCS6D01G051300 chr6A 87.500 1032 82 17 7421 8436 23432958 23431958 0.000000e+00 1147.0
18 TraesCS6D01G051300 chr6A 89.254 335 18 8 612 946 23439778 23439462 3.670000e-108 403.0
19 TraesCS6D01G051300 chr6A 91.078 269 8 5 11 264 23440047 23439780 4.850000e-92 350.0
20 TraesCS6D01G051300 chr6A 93.496 123 7 1 11 133 22990104 22990225 1.870000e-41 182.0
21 TraesCS6D01G051300 chr6A 95.556 90 4 0 3947 4036 23436567 23436478 2.460000e-30 145.0
22 TraesCS6D01G051300 chr6A 87.705 122 8 3 18 133 23026769 23026889 1.480000e-27 135.0
23 TraesCS6D01G051300 chr6A 73.967 242 55 4 7947 8181 16016211 16016451 3.250000e-14 91.6
24 TraesCS6D01G051300 chr4D 90.588 170 8 3 3779 3948 334164391 334164552 1.430000e-52 219.0
25 TraesCS6D01G051300 chr4D 88.827 179 12 3 3779 3957 64390632 64390462 6.640000e-51 213.0
26 TraesCS6D01G051300 chr4D 89.091 110 8 4 682 790 427022735 427022629 5.320000e-27 134.0
27 TraesCS6D01G051300 chr4D 90.291 103 9 1 693 795 427324531 427324430 5.320000e-27 134.0
28 TraesCS6D01G051300 chr4D 84.507 71 11 0 8088 8158 166506526 166506456 4.230000e-08 71.3
29 TraesCS6D01G051300 chr5D 88.506 174 12 4 3778 3951 486449423 486449258 4.000000e-48 204.0
30 TraesCS6D01G051300 chr5D 86.705 173 16 2 3777 3948 359051095 359051261 1.450000e-42 185.0
31 TraesCS6D01G051300 chr5D 76.233 223 51 2 7947 8168 27391528 27391307 5.360000e-22 117.0
32 TraesCS6D01G051300 chr5D 74.118 255 58 4 7947 8193 437081366 437081620 1.940000e-16 99.0
33 TraesCS6D01G051300 chr5A 88.506 174 12 5 3777 3950 688327045 688327210 4.000000e-48 204.0
34 TraesCS6D01G051300 chr5A 74.806 258 56 5 7947 8196 635893070 635892814 3.220000e-19 108.0
35 TraesCS6D01G051300 chr2B 86.486 185 16 4 3777 3961 774133317 774133142 2.410000e-45 195.0
36 TraesCS6D01G051300 chr1B 87.647 170 16 3 3779 3948 515918593 515918429 8.650000e-45 193.0
37 TraesCS6D01G051300 chr1B 74.419 215 47 8 8088 8297 155708149 155708360 1.510000e-12 86.1
38 TraesCS6D01G051300 chr1B 79.091 110 21 2 8088 8196 474468698 474468590 3.270000e-09 75.0
39 TraesCS6D01G051300 chr4B 89.908 109 7 4 689 795 522685234 522685128 4.110000e-28 137.0
40 TraesCS6D01G051300 chrUn 87.705 122 8 3 18 133 284474115 284473995 1.480000e-27 135.0
41 TraesCS6D01G051300 chr4A 89.286 112 6 6 689 797 38659334 38659442 1.480000e-27 135.0
42 TraesCS6D01G051300 chr7B 76.562 256 52 5 3987 4239 182079373 182079623 5.320000e-27 134.0
43 TraesCS6D01G051300 chr3B 73.930 257 60 3 7947 8196 588702927 588702671 6.980000e-16 97.1
44 TraesCS6D01G051300 chr7D 73.705 251 59 4 7953 8196 577902950 577902700 3.250000e-14 91.6
45 TraesCS6D01G051300 chr2D 73.152 257 62 3 7947 8196 54292950 54292694 1.510000e-12 86.1
46 TraesCS6D01G051300 chr3D 72.845 232 57 2 7951 8176 180832528 180832297 3.270000e-09 75.0
47 TraesCS6D01G051300 chr3D 80.851 94 18 0 8088 8181 523150982 523151075 3.270000e-09 75.0
48 TraesCS6D01G051300 chr3D 73.430 207 46 6 8088 8287 555420839 555421043 1.520000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G051300 chr6D 24438346 24446793 8447 False 15601 15601 100.000000 1 8448 1 chr6D.!!$F2 8447
1 TraesCS6D01G051300 chr6D 24360711 24361467 756 True 422 422 78.323000 11 718 1 chr6D.!!$R4 707
2 TraesCS6D01G051300 chr6B 39759013 39766732 7719 False 5377 6606 91.585500 540 8446 2 chr6B.!!$F3 7906
3 TraesCS6D01G051300 chr6A 23431958 23440047 8089 True 1682 4787 90.788333 11 8436 6 chr6A.!!$R1 8425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
510 556 0.034896 TCCTGCTCTTCCCGAACAAC 59.965 55.000 0.0 0.00 0.00 3.32 F
1580 1737 0.040958 GAGCAAGCGTCCACAGTTTG 60.041 55.000 0.0 0.00 33.79 2.93 F
2699 2870 0.108804 GAATCCAGACGCCGAAGACA 60.109 55.000 0.0 0.00 0.00 3.41 F
3337 3508 0.036590 TGTGTTGCTAGAGCCATGCA 59.963 50.000 0.0 0.00 41.18 3.96 F
3451 3623 0.541764 GCAGGAATGTGGGTTTGGGA 60.542 55.000 0.0 0.00 0.00 4.37 F
3634 3828 0.884704 TTTCTGCACTTCTCCGTGGC 60.885 55.000 0.0 0.00 35.47 5.01 F
3799 3993 1.203275 ACTCCCTCCGTTCCTAAAGGT 60.203 52.381 0.0 0.00 36.34 3.50 F
5406 5706 0.780002 CAACCGACGTACGTTTCCAG 59.220 55.000 23.7 11.79 40.78 3.86 F
5946 6247 0.323957 ACCCGGTTCAGCCTAGTTTC 59.676 55.000 0.0 0.00 34.25 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 1832 0.179000 GTCAGAATCGGGGATGCACT 59.821 55.000 0.00 0.00 0.00 4.40 R
3099 3270 0.032615 TAGATTTTGCCGGCCCCATT 60.033 50.000 26.77 7.86 0.00 3.16 R
3932 4126 1.076677 TGAACTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 35.97 3.36 R
4909 5208 0.468226 ACGCCAGTTGAGTCTTTCCA 59.532 50.000 0.00 0.00 0.00 3.53 R
4910 5209 1.531578 GAACGCCAGTTGAGTCTTTCC 59.468 52.381 0.00 0.00 41.34 3.13 R
5351 5651 3.570975 ACGAACACCCCTTAATGTTTTCC 59.429 43.478 0.00 0.00 39.13 3.13 R
5796 6097 2.151202 GAAGGTCAACGCAATCAAGGA 58.849 47.619 0.00 0.00 0.00 3.36 R
6283 6593 0.865111 TGACAAAGACCATTGCGTCG 59.135 50.000 0.00 0.00 37.85 5.12 R
7761 8136 0.186630 CATCTCCATGCCCCATTCCA 59.813 55.000 0.00 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.621055 GCATATTGTGCGAATTGGGGTA 59.379 45.455 0.00 0.00 45.23 3.69
254 280 4.536765 ACCAGATTGGATTCATGTTACCC 58.463 43.478 1.40 0.00 40.96 3.69
256 282 4.581824 CCAGATTGGATTCATGTTACCCAG 59.418 45.833 0.00 0.00 40.96 4.45
273 299 8.598916 TGTTACCCAGTCTTTCTCATTAACATA 58.401 33.333 0.00 0.00 0.00 2.29
274 300 9.099454 GTTACCCAGTCTTTCTCATTAACATAG 57.901 37.037 0.00 0.00 0.00 2.23
342 377 8.862325 TGTTGTTTTTGGACATATATGAGTCT 57.138 30.769 19.63 0.00 35.18 3.24
358 393 5.443185 TGAGTCTTTTTGATTCAGCTTGG 57.557 39.130 0.00 0.00 36.66 3.61
368 403 3.072915 TGATTCAGCTTGGAGAACTGGAA 59.927 43.478 0.00 0.00 32.19 3.53
381 416 3.809832 AGAACTGGAACAAACGATGTCAG 59.190 43.478 10.77 10.77 42.99 3.51
394 429 0.112995 ATGTCAGCCCCAAAAGCAGA 59.887 50.000 0.00 0.00 0.00 4.26
397 432 0.106268 TCAGCCCCAAAAGCAGACAA 60.106 50.000 0.00 0.00 0.00 3.18
405 440 4.280677 CCCCAAAAGCAGACAAGTAATCAA 59.719 41.667 0.00 0.00 0.00 2.57
412 447 4.213482 AGCAGACAAGTAATCAACGAAACC 59.787 41.667 0.00 0.00 0.00 3.27
420 455 3.343380 AATCAACGAAACCGAACCAAC 57.657 42.857 0.00 0.00 0.00 3.77
421 456 1.735386 TCAACGAAACCGAACCAACA 58.265 45.000 0.00 0.00 0.00 3.33
425 460 1.667212 ACGAAACCGAACCAACAAGTC 59.333 47.619 0.00 0.00 0.00 3.01
436 471 4.882842 ACCAACAAGTCAACAAAAGGTT 57.117 36.364 0.00 0.00 41.47 3.50
445 480 8.962679 ACAAGTCAACAAAAGGTTAAATGACTA 58.037 29.630 6.01 0.00 37.79 2.59
446 481 9.965824 CAAGTCAACAAAAGGTTAAATGACTAT 57.034 29.630 6.01 0.00 37.79 2.12
476 522 1.152989 GATGCTGGCTCGCTGAGAAG 61.153 60.000 9.32 6.93 0.00 2.85
482 528 2.720134 GCTCGCTGAGAAGGGCTCT 61.720 63.158 9.32 0.00 44.27 4.09
489 535 3.340814 CTGAGAAGGGCTCTGCTTTTA 57.659 47.619 0.00 0.00 44.27 1.52
491 537 2.639839 TGAGAAGGGCTCTGCTTTTACT 59.360 45.455 0.00 0.00 44.27 2.24
503 549 2.290323 TGCTTTTACTCCTGCTCTTCCC 60.290 50.000 0.00 0.00 0.00 3.97
508 554 0.832135 ACTCCTGCTCTTCCCGAACA 60.832 55.000 0.00 0.00 0.00 3.18
509 555 0.321671 CTCCTGCTCTTCCCGAACAA 59.678 55.000 0.00 0.00 0.00 2.83
510 556 0.034896 TCCTGCTCTTCCCGAACAAC 59.965 55.000 0.00 0.00 0.00 3.32
511 557 0.250295 CCTGCTCTTCCCGAACAACA 60.250 55.000 0.00 0.00 0.00 3.33
525 571 5.163794 CCCGAACAACAAACACTCCATATAC 60.164 44.000 0.00 0.00 0.00 1.47
528 574 7.332430 CCGAACAACAAACACTCCATATACTAA 59.668 37.037 0.00 0.00 0.00 2.24
541 609 9.435570 ACTCCATATACTAATAGTTTCCAGTGT 57.564 33.333 0.00 0.00 0.00 3.55
563 631 6.199719 GTGTTTGAGGAAAGCAAGAAAAGATG 59.800 38.462 0.00 0.00 30.02 2.90
568 636 6.491062 TGAGGAAAGCAAGAAAAGATGATCAA 59.509 34.615 0.00 0.00 0.00 2.57
608 677 2.693797 ATGCAGCAAAACGAGTGAAG 57.306 45.000 0.00 0.00 0.00 3.02
609 678 1.662517 TGCAGCAAAACGAGTGAAGA 58.337 45.000 0.00 0.00 0.00 2.87
709 783 7.707624 ATGAAATTATCAGAGCCAAGTTTCA 57.292 32.000 0.00 0.00 42.53 2.69
790 864 6.260870 TGTTGTGCTTGTTCTGAAACTTAA 57.739 33.333 0.00 0.00 36.30 1.85
809 883 7.166691 ACTTAACTTTGTATAGCTTCCTCGA 57.833 36.000 0.00 0.00 0.00 4.04
891 968 2.449525 GCGTGATACAAAGCCGCGA 61.450 57.895 8.23 0.00 36.06 5.87
896 973 1.429148 GATACAAAGCCGCGACCCAG 61.429 60.000 8.23 0.00 0.00 4.45
914 991 4.748144 CCCAGCCCAAGTCCCAGC 62.748 72.222 0.00 0.00 0.00 4.85
915 992 4.748144 CCAGCCCAAGTCCCAGCC 62.748 72.222 0.00 0.00 0.00 4.85
933 1041 1.362224 CCCTTCCTCTGGACCAAGAA 58.638 55.000 0.00 0.00 0.00 2.52
977 1094 0.836606 TGCAATCGCCTTATCCTCCA 59.163 50.000 0.00 0.00 37.32 3.86
1104 1233 2.363147 GGCACGTCCTCCTCCTCT 60.363 66.667 0.00 0.00 0.00 3.69
1113 1242 0.397816 CCTCCTCCTCTCCGTCCATT 60.398 60.000 0.00 0.00 0.00 3.16
1245 1377 4.861210 GACTACATCGAGGGTAATGTCTG 58.139 47.826 0.69 0.00 37.33 3.51
1324 1462 0.792640 AGCGAATGTTCAGCGTTCTG 59.207 50.000 0.00 0.00 40.14 3.02
1325 1463 0.790866 GCGAATGTTCAGCGTTCTGC 60.791 55.000 0.00 0.00 46.98 4.26
1346 1494 4.202101 TGCAAATATTGGGCTCGGTAAATG 60.202 41.667 12.10 0.00 0.00 2.32
1366 1514 1.452145 TTGGTCGCCTGAAAAGTGGC 61.452 55.000 0.00 0.00 45.25 5.01
1436 1590 5.484715 CAGGTTGATTAGAGTAAAACCGGA 58.515 41.667 9.46 0.00 44.06 5.14
1507 1664 2.931969 CACTGCTGCGAAGAATACATCA 59.068 45.455 0.00 0.00 0.00 3.07
1513 1670 4.051237 CTGCGAAGAATACATCAATCGGA 58.949 43.478 0.00 0.00 38.98 4.55
1540 1697 0.179192 CACAATTGGTGTCGGCATCG 60.179 55.000 10.83 0.00 42.75 3.84
1573 1730 2.922503 TCCCTGAGCAAGCGTCCA 60.923 61.111 0.00 0.00 0.00 4.02
1576 1733 2.031516 CCTGAGCAAGCGTCCACAG 61.032 63.158 0.00 0.00 0.00 3.66
1580 1737 0.040958 GAGCAAGCGTCCACAGTTTG 60.041 55.000 0.00 0.00 33.79 2.93
1596 1753 0.814410 TTTGGCTGCAAACGACCGTA 60.814 50.000 0.50 0.00 0.00 4.02
1639 1796 3.141398 GCTGTGAGAAACCACATGAAGA 58.859 45.455 0.00 0.00 44.93 2.87
1641 1798 4.142730 GCTGTGAGAAACCACATGAAGATC 60.143 45.833 0.00 0.00 44.93 2.75
1663 1821 0.178995 TGCCAAGAATCAGCCACACA 60.179 50.000 0.00 0.00 0.00 3.72
1674 1832 2.356913 CCACACACATCGCCGACA 60.357 61.111 0.00 0.00 0.00 4.35
1695 1853 0.617935 TGCATCCCCGATTCTGACAA 59.382 50.000 0.00 0.00 0.00 3.18
1704 1862 3.181490 CCCGATTCTGACAACGAGATACA 60.181 47.826 0.00 0.00 0.00 2.29
1710 1868 4.806330 TCTGACAACGAGATACAAAGGAC 58.194 43.478 0.00 0.00 0.00 3.85
1723 1881 6.891908 AGATACAAAGGACAAATATGCAAGGT 59.108 34.615 0.00 0.00 0.00 3.50
1728 1886 2.168313 GGACAAATATGCAAGGTTGGGG 59.832 50.000 10.30 0.00 0.00 4.96
1744 1902 1.976474 GGGCCGCAAAAGATCACCA 60.976 57.895 0.00 0.00 0.00 4.17
1748 1906 1.269517 GCCGCAAAAGATCACCAAACA 60.270 47.619 0.00 0.00 0.00 2.83
1767 1925 2.231478 ACAGACCACTTATCACCTGTCG 59.769 50.000 0.00 0.00 29.93 4.35
1854 2012 3.998672 GGACACGTCGAAGGGCCA 61.999 66.667 6.18 0.00 0.00 5.36
1943 2101 0.250234 ACCATCACCATCCTCACACG 59.750 55.000 0.00 0.00 0.00 4.49
2145 2307 3.319198 GTTGCCACTCCCCCTCGA 61.319 66.667 0.00 0.00 0.00 4.04
2176 2338 0.179018 AGGAAGGACAAGCACCACAC 60.179 55.000 0.00 0.00 0.00 3.82
2216 2379 2.672996 TGAAGAGCCCGGCTTTGC 60.673 61.111 14.70 7.26 39.88 3.68
2282 2450 0.109723 AACGGCCACACTGGTACAAT 59.890 50.000 2.24 0.00 40.46 2.71
2283 2451 0.605319 ACGGCCACACTGGTACAATG 60.605 55.000 2.24 0.00 43.42 2.82
2340 2508 3.888930 CCACAAGCAACTAAGGAAAGGAA 59.111 43.478 0.00 0.00 0.00 3.36
2366 2534 2.867109 AGATTACAGCTTGCACAGGT 57.133 45.000 0.00 0.00 0.00 4.00
2415 2583 1.078710 AAGGTCGGAGCAGTAGGGT 59.921 57.895 10.15 0.00 0.00 4.34
2443 2611 1.594833 CCGACCATCGAAGGTGGAA 59.405 57.895 21.47 0.00 43.74 3.53
2445 2613 1.609580 CCGACCATCGAAGGTGGAAAA 60.610 52.381 21.47 0.00 43.74 2.29
2448 2616 3.081804 GACCATCGAAGGTGGAAAATGT 58.918 45.455 18.60 0.00 43.38 2.71
2570 2741 1.795286 GATTCGGGCTAGAAGAATGCG 59.205 52.381 10.96 0.00 35.06 4.73
2699 2870 0.108804 GAATCCAGACGCCGAAGACA 60.109 55.000 0.00 0.00 0.00 3.41
2708 2879 4.063529 CCGAAGACAAGGCAGCAA 57.936 55.556 0.00 0.00 0.00 3.91
2713 2884 2.157738 GAAGACAAGGCAGCAAGACAT 58.842 47.619 0.00 0.00 0.00 3.06
2715 2886 1.072806 AGACAAGGCAGCAAGACATCA 59.927 47.619 0.00 0.00 0.00 3.07
2738 2909 2.811873 GCAAAGACCAAGAGAGGCAAGA 60.812 50.000 0.00 0.00 0.00 3.02
2753 2924 1.337635 GCAAGAGGGATAGAGCATCGG 60.338 57.143 0.00 0.00 42.67 4.18
2796 2967 2.360350 ACTTCCGGCATGCCACTG 60.360 61.111 34.93 22.39 35.37 3.66
2849 3020 0.603569 AGGATTGAAGACGTCGTGCT 59.396 50.000 9.23 2.63 0.00 4.40
2865 3036 3.691342 CTGCCGGGACCGAGTGAA 61.691 66.667 13.13 0.00 42.83 3.18
2939 3110 3.197983 AGAAGAAAGCGGTGCCTAAGTAT 59.802 43.478 0.00 0.00 0.00 2.12
2959 3130 0.181350 GTCTCCATTGCCTACCCTGG 59.819 60.000 0.00 0.00 0.00 4.45
3010 3181 3.551496 TTGCCTTGCTCTCCACCCG 62.551 63.158 0.00 0.00 0.00 5.28
3039 3210 0.453793 CGAGACTAGCTGGACCACTG 59.546 60.000 3.17 0.00 0.00 3.66
3069 3240 0.887933 CCCAACCGTTTGCAGCTATT 59.112 50.000 0.00 0.00 0.00 1.73
3152 3323 2.373335 TCTCCTAGATCCAGGCTCAC 57.627 55.000 1.71 0.00 35.49 3.51
3192 3363 0.179127 CATCGACGCTCATGACCAGT 60.179 55.000 0.00 0.00 0.00 4.00
3244 3415 1.051812 CACAGGGGAGTTGTCTCACT 58.948 55.000 0.00 0.00 43.16 3.41
3245 3416 2.248248 CACAGGGGAGTTGTCTCACTA 58.752 52.381 0.00 0.00 43.16 2.74
3246 3417 2.834549 CACAGGGGAGTTGTCTCACTAT 59.165 50.000 0.00 0.00 43.16 2.12
3301 3472 2.073232 AGTGAGGAAGCCACTGCAT 58.927 52.632 0.00 0.00 42.68 3.96
3313 3484 1.450848 ACTGCATGCATCCACTCCG 60.451 57.895 22.97 9.38 0.00 4.63
3323 3494 3.953775 CCACTCCGGGCCTGTGTT 61.954 66.667 11.58 0.00 0.00 3.32
3330 3501 1.448540 CGGGCCTGTGTTGCTAGAG 60.449 63.158 2.29 0.00 0.00 2.43
3337 3508 0.036590 TGTGTTGCTAGAGCCATGCA 59.963 50.000 0.00 0.00 41.18 3.96
3385 3556 4.263209 CTGCACGCGTTTTGCCCA 62.263 61.111 10.22 0.00 42.08 5.36
3419 3590 1.008309 GGCGACGAGGTAGAGATGC 60.008 63.158 0.00 0.00 0.00 3.91
3434 3606 1.697394 ATGCAGGTGATAGGGGGCA 60.697 57.895 0.00 0.00 35.54 5.36
3441 3613 0.846693 GTGATAGGGGGCAGGAATGT 59.153 55.000 0.00 0.00 0.00 2.71
3442 3614 0.846015 TGATAGGGGGCAGGAATGTG 59.154 55.000 0.00 0.00 0.00 3.21
3451 3623 0.541764 GCAGGAATGTGGGTTTGGGA 60.542 55.000 0.00 0.00 0.00 4.37
3600 3794 2.233431 TGGCTGTTGGGAATATGTTTGC 59.767 45.455 0.00 0.00 0.00 3.68
3618 3812 5.475564 TGTTTGCAGTCTACCCCTATTTTTC 59.524 40.000 0.00 0.00 0.00 2.29
3626 3820 5.354513 GTCTACCCCTATTTTTCTGCACTTC 59.645 44.000 0.00 0.00 0.00 3.01
3634 3828 0.884704 TTTCTGCACTTCTCCGTGGC 60.885 55.000 0.00 0.00 35.47 5.01
3636 3830 3.865929 CTGCACTTCTCCGTGGCGT 62.866 63.158 0.00 0.00 35.47 5.68
3648 3842 2.033448 TGGCGTCGCTCCCAATTT 59.967 55.556 18.11 0.00 0.00 1.82
3669 3863 1.417890 CATACCTGAGGCTAAGGGGTG 59.582 57.143 22.35 15.31 39.30 4.61
3773 3967 8.095452 AGAGTCCAGATTAAACTACCAATCAT 57.905 34.615 0.00 0.00 34.28 2.45
3784 3978 9.841295 TTAAACTACCAATCATGTTATACTCCC 57.159 33.333 0.00 0.00 0.00 4.30
3785 3979 7.691993 AACTACCAATCATGTTATACTCCCT 57.308 36.000 0.00 0.00 0.00 4.20
3786 3980 7.304497 ACTACCAATCATGTTATACTCCCTC 57.696 40.000 0.00 0.00 0.00 4.30
3787 3981 5.568620 ACCAATCATGTTATACTCCCTCC 57.431 43.478 0.00 0.00 0.00 4.30
3788 3982 4.040461 ACCAATCATGTTATACTCCCTCCG 59.960 45.833 0.00 0.00 0.00 4.63
3789 3983 4.040461 CCAATCATGTTATACTCCCTCCGT 59.960 45.833 0.00 0.00 0.00 4.69
3790 3984 5.454755 CCAATCATGTTATACTCCCTCCGTT 60.455 44.000 0.00 0.00 0.00 4.44
3791 3985 4.931661 TCATGTTATACTCCCTCCGTTC 57.068 45.455 0.00 0.00 0.00 3.95
3792 3986 3.640029 TCATGTTATACTCCCTCCGTTCC 59.360 47.826 0.00 0.00 0.00 3.62
3793 3987 3.393426 TGTTATACTCCCTCCGTTCCT 57.607 47.619 0.00 0.00 0.00 3.36
3794 3988 4.524802 TGTTATACTCCCTCCGTTCCTA 57.475 45.455 0.00 0.00 0.00 2.94
3795 3989 4.870636 TGTTATACTCCCTCCGTTCCTAA 58.129 43.478 0.00 0.00 0.00 2.69
3796 3990 5.271598 TGTTATACTCCCTCCGTTCCTAAA 58.728 41.667 0.00 0.00 0.00 1.85
3797 3991 5.361857 TGTTATACTCCCTCCGTTCCTAAAG 59.638 44.000 0.00 0.00 0.00 1.85
3798 3992 1.569653 ACTCCCTCCGTTCCTAAAGG 58.430 55.000 0.00 0.00 0.00 3.11
3799 3993 1.203275 ACTCCCTCCGTTCCTAAAGGT 60.203 52.381 0.00 0.00 36.34 3.50
3800 3994 2.043526 ACTCCCTCCGTTCCTAAAGGTA 59.956 50.000 0.00 0.00 36.34 3.08
3801 3995 3.102204 CTCCCTCCGTTCCTAAAGGTAA 58.898 50.000 0.00 0.00 36.34 2.85
3802 3996 3.102204 TCCCTCCGTTCCTAAAGGTAAG 58.898 50.000 0.00 0.00 36.34 2.34
3803 3997 2.836372 CCCTCCGTTCCTAAAGGTAAGT 59.164 50.000 0.00 0.00 36.34 2.24
3804 3998 3.118847 CCCTCCGTTCCTAAAGGTAAGTC 60.119 52.174 0.00 0.00 36.34 3.01
3805 3999 3.768215 CCTCCGTTCCTAAAGGTAAGTCT 59.232 47.826 0.00 0.00 36.34 3.24
3806 4000 4.222366 CCTCCGTTCCTAAAGGTAAGTCTT 59.778 45.833 0.00 0.00 36.34 3.01
3807 4001 5.279859 CCTCCGTTCCTAAAGGTAAGTCTTT 60.280 44.000 0.00 0.00 39.86 2.52
3808 4002 6.178607 TCCGTTCCTAAAGGTAAGTCTTTT 57.821 37.500 0.00 0.00 37.96 2.27
3809 4003 6.594744 TCCGTTCCTAAAGGTAAGTCTTTTT 58.405 36.000 0.00 0.00 37.96 1.94
3847 4041 7.603180 ATGGACTACATATAGAGCAAACTGA 57.397 36.000 0.00 0.00 38.26 3.41
3848 4042 7.043961 TGGACTACATATAGAGCAAACTGAG 57.956 40.000 0.00 0.00 32.23 3.35
3849 4043 6.607600 TGGACTACATATAGAGCAAACTGAGT 59.392 38.462 0.00 0.00 32.23 3.41
3850 4044 6.920758 GGACTACATATAGAGCAAACTGAGTG 59.079 42.308 0.00 0.00 32.23 3.51
3851 4045 7.201830 GGACTACATATAGAGCAAACTGAGTGA 60.202 40.741 0.00 0.00 32.23 3.41
3852 4046 8.067751 ACTACATATAGAGCAAACTGAGTGAA 57.932 34.615 0.00 0.00 32.23 3.18
3853 4047 8.700051 ACTACATATAGAGCAAACTGAGTGAAT 58.300 33.333 0.00 0.00 32.23 2.57
3854 4048 9.190858 CTACATATAGAGCAAACTGAGTGAATC 57.809 37.037 0.00 0.00 0.00 2.52
3855 4049 7.790027 ACATATAGAGCAAACTGAGTGAATCT 58.210 34.615 0.00 0.00 0.00 2.40
3856 4050 8.918116 ACATATAGAGCAAACTGAGTGAATCTA 58.082 33.333 0.00 0.00 0.00 1.98
3857 4051 9.190858 CATATAGAGCAAACTGAGTGAATCTAC 57.809 37.037 0.00 0.00 0.00 2.59
3858 4052 5.474578 AGAGCAAACTGAGTGAATCTACA 57.525 39.130 0.00 0.00 0.00 2.74
3859 4053 5.233988 AGAGCAAACTGAGTGAATCTACAC 58.766 41.667 0.00 0.00 40.60 2.90
3873 4067 9.469097 AGTGAATCTACACTCTAAACTATGTCT 57.531 33.333 0.00 0.00 46.36 3.41
3894 4088 9.781633 ATGTCTATATACATCCGTATCTAGTCC 57.218 37.037 0.00 0.00 39.17 3.85
3895 4089 8.765517 TGTCTATATACATCCGTATCTAGTCCA 58.234 37.037 0.00 0.00 39.17 4.02
3896 4090 9.781633 GTCTATATACATCCGTATCTAGTCCAT 57.218 37.037 0.00 0.00 39.17 3.41
3901 4095 6.531503 ACATCCGTATCTAGTCCATATTGG 57.468 41.667 0.00 0.00 39.43 3.16
3902 4096 6.253758 ACATCCGTATCTAGTCCATATTGGA 58.746 40.000 0.00 0.00 45.98 3.53
3924 4118 9.847224 TTGGAATCTCTAAAAACTAAACAGACT 57.153 29.630 0.00 0.00 0.00 3.24
3925 4119 9.847224 TGGAATCTCTAAAAACTAAACAGACTT 57.153 29.630 0.00 0.00 0.00 3.01
3939 4133 9.813446 ACTAAACAGACTTATATTTAGGAACGG 57.187 33.333 7.33 0.00 38.43 4.44
3941 4135 8.943909 AAACAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3942 4136 7.052142 ACAGACTTATATTTAGGAACGGAGG 57.948 40.000 0.00 0.00 0.00 4.30
3943 4137 6.041751 ACAGACTTATATTTAGGAACGGAGGG 59.958 42.308 0.00 0.00 0.00 4.30
3944 4138 6.267014 CAGACTTATATTTAGGAACGGAGGGA 59.733 42.308 0.00 0.00 0.00 4.20
3945 4139 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4036 4230 6.545504 AATTCCACTAATCATGTATGTCGC 57.454 37.500 0.00 0.00 0.00 5.19
4043 4237 8.029522 CCACTAATCATGTATGTCGCTATTAGT 58.970 37.037 0.00 0.00 38.53 2.24
4124 4318 9.791801 TCTTCCAATAGCATGCAAAGTATATTA 57.208 29.630 21.98 0.00 0.00 0.98
4156 4350 9.104965 CATTGATAATCGACCAGTTACCTTAAA 57.895 33.333 0.00 0.00 0.00 1.52
4157 4351 8.712285 TTGATAATCGACCAGTTACCTTAAAG 57.288 34.615 0.00 0.00 0.00 1.85
4217 4411 5.674525 TCCCATGCTGAGTAAGTAAATCAG 58.325 41.667 0.00 0.00 42.70 2.90
4227 4421 7.806690 TGAGTAAGTAAATCAGTTTCATGCAC 58.193 34.615 0.00 0.00 0.00 4.57
4240 4434 7.969508 TCAGTTTCATGCACAAATACATGTATG 59.030 33.333 18.94 11.60 43.34 2.39
4244 4438 8.859517 TTCATGCACAAATACATGTATGATTG 57.140 30.769 18.94 20.22 44.17 2.67
4245 4439 6.919115 TCATGCACAAATACATGTATGATTGC 59.081 34.615 25.14 25.14 41.27 3.56
4246 4440 6.205101 TGCACAAATACATGTATGATTGCA 57.795 33.333 28.05 28.05 30.84 4.08
4247 4441 6.035217 TGCACAAATACATGTATGATTGCAC 58.965 36.000 28.05 20.19 30.84 4.57
4248 4442 6.035217 GCACAAATACATGTATGATTGCACA 58.965 36.000 26.08 1.61 30.84 4.57
4249 4443 6.530887 GCACAAATACATGTATGATTGCACAA 59.469 34.615 26.08 1.17 30.84 3.33
4250 4444 7.063191 GCACAAATACATGTATGATTGCACAAA 59.937 33.333 26.08 1.00 30.84 2.83
4251 4445 9.089601 CACAAATACATGTATGATTGCACAAAT 57.910 29.630 22.02 6.60 30.84 2.32
4315 4603 3.181490 TGTTGGATCGAGTCTATTCGTGG 60.181 47.826 0.00 0.00 41.22 4.94
4335 4623 5.479306 GTGGAAGTCTTGTGCTATTGACTA 58.521 41.667 0.00 0.00 38.63 2.59
4370 4658 6.560253 TCTCTGAAATCTTTTTGTACAGGC 57.440 37.500 0.00 0.00 0.00 4.85
4466 4754 3.165071 TGAGTCTTCAGGTGCATAGACA 58.835 45.455 14.17 0.00 39.51 3.41
4661 4951 6.798315 CAGAAAATGCTATCTGGTCCTATG 57.202 41.667 0.00 0.00 39.48 2.23
4701 4991 5.297029 GTCACTATACCCCAATTTCTTCTGC 59.703 44.000 0.00 0.00 0.00 4.26
4730 5021 7.439356 TCTTGTGCTATGAGCTGAACAATATAC 59.561 37.037 0.00 0.00 42.97 1.47
4731 5022 6.820335 TGTGCTATGAGCTGAACAATATACT 58.180 36.000 0.00 0.00 42.97 2.12
4805 5096 9.474920 TTTCTTAAGGCAATATTTTGACACTTG 57.525 29.630 4.47 0.00 43.89 3.16
4926 5225 4.037923 TCATTTTGGAAAGACTCAACTGGC 59.962 41.667 0.00 0.00 0.00 4.85
5107 5407 9.625747 TGCTTGTATTTTCAGATGGTGATATTA 57.374 29.630 0.00 0.00 34.17 0.98
5166 5466 3.058914 GTGAAGGACAAACGATCAACTGG 60.059 47.826 0.00 0.00 0.00 4.00
5188 5488 4.319549 GGAGAAGCTTTTGGAACTTACGTG 60.320 45.833 0.00 0.00 0.00 4.49
5211 5511 5.243730 TGGAGGTGACAATTTTGAATTCTCC 59.756 40.000 7.05 14.34 36.94 3.71
5351 5651 4.327982 TCAGAGACAAGTCCTTCACAAG 57.672 45.455 0.00 0.00 0.00 3.16
5406 5706 0.780002 CAACCGACGTACGTTTCCAG 59.220 55.000 23.70 11.79 40.78 3.86
5451 5751 9.638239 TCATTTATGAAACTTTTCTGGCATAAC 57.362 29.630 3.48 0.00 38.02 1.89
5511 5811 4.163552 TGTCGCATAAACGAGTTACTCAG 58.836 43.478 13.14 7.77 43.89 3.35
5512 5812 3.000971 GTCGCATAAACGAGTTACTCAGC 60.001 47.826 13.14 5.28 43.89 4.26
5513 5813 3.119602 TCGCATAAACGAGTTACTCAGCT 60.120 43.478 13.14 0.00 37.09 4.24
5514 5814 3.240861 CGCATAAACGAGTTACTCAGCTC 59.759 47.826 13.14 0.00 34.06 4.09
5515 5815 4.174009 GCATAAACGAGTTACTCAGCTCA 58.826 43.478 13.14 0.00 31.83 4.26
5518 5818 2.333389 ACGAGTTACTCAGCTCAACG 57.667 50.000 13.14 0.00 31.83 4.10
5519 5819 1.607628 ACGAGTTACTCAGCTCAACGT 59.392 47.619 13.14 0.00 31.83 3.99
5520 5820 2.034305 ACGAGTTACTCAGCTCAACGTT 59.966 45.455 13.14 0.00 31.83 3.99
5521 5821 3.050619 CGAGTTACTCAGCTCAACGTTT 58.949 45.455 13.14 0.00 31.83 3.60
5522 5822 3.121328 CGAGTTACTCAGCTCAACGTTTG 60.121 47.826 13.14 0.00 31.83 2.93
5523 5823 3.131396 AGTTACTCAGCTCAACGTTTGG 58.869 45.455 0.00 0.00 0.00 3.28
5524 5824 2.870411 GTTACTCAGCTCAACGTTTGGT 59.130 45.455 0.00 0.00 0.00 3.67
5525 5825 2.902705 ACTCAGCTCAACGTTTGGTA 57.097 45.000 0.00 0.00 0.00 3.25
5526 5826 2.480845 ACTCAGCTCAACGTTTGGTAC 58.519 47.619 0.00 0.00 0.00 3.34
5683 5984 4.101119 AGTGTATCTGGTGGTACTTATGGC 59.899 45.833 0.00 0.00 0.00 4.40
5690 5991 4.523083 TGGTGGTACTTATGGCTTGATTC 58.477 43.478 0.00 0.00 0.00 2.52
5706 6007 6.976925 GGCTTGATTCCTTCAATGTTTATCTG 59.023 38.462 0.00 0.00 43.30 2.90
5750 6051 5.285607 CGATACTTACGTCAGAACTGTTTCC 59.714 44.000 3.23 0.00 31.28 3.13
5796 6097 7.383300 GCAAAAAGTTCTCTTCTGCATACAAAT 59.617 33.333 0.00 0.00 39.79 2.32
5807 6108 4.031418 TGCATACAAATCCTTGATTGCG 57.969 40.909 10.08 0.00 42.06 4.85
5860 6161 5.241403 TGGCTTCTTTTCTGACCAGATTA 57.759 39.130 0.01 0.00 37.29 1.75
5946 6247 0.323957 ACCCGGTTCAGCCTAGTTTC 59.676 55.000 0.00 0.00 34.25 2.78
6065 6366 1.227089 CGAGCGGGATGAAGAGGTG 60.227 63.158 0.00 0.00 0.00 4.00
6179 6486 2.146342 CCAGACTACCAGCACACAAAG 58.854 52.381 0.00 0.00 0.00 2.77
6180 6487 1.532868 CAGACTACCAGCACACAAAGC 59.467 52.381 0.00 0.00 0.00 3.51
6181 6488 1.417890 AGACTACCAGCACACAAAGCT 59.582 47.619 0.00 0.00 44.62 3.74
6182 6489 2.158755 AGACTACCAGCACACAAAGCTT 60.159 45.455 0.00 0.00 41.14 3.74
6201 6508 4.471386 AGCTTGCTACCTTATCTCTCCAAA 59.529 41.667 0.00 0.00 0.00 3.28
6359 6669 7.760131 ATCATGTAATTTGCAAATTTCTCGG 57.240 32.000 35.18 23.35 39.24 4.63
6628 6945 7.495606 TCATTTCCAATACGCTGCTATATATGG 59.504 37.037 0.00 6.81 0.00 2.74
6650 6967 5.924254 TGGTGAAAGTAGTGTTCTATGAACG 59.076 40.000 6.05 0.00 0.00 3.95
6653 6970 5.986741 TGAAAGTAGTGTTCTATGAACGCAA 59.013 36.000 21.01 1.88 33.39 4.85
7018 7335 2.610479 GGCAAAGGGCTAAAGCAAAGAC 60.610 50.000 4.07 0.00 44.36 3.01
7129 7446 1.079612 CCGCATCAGAGTCACTGCA 60.080 57.895 10.83 0.00 45.38 4.41
7130 7447 1.082679 CCGCATCAGAGTCACTGCAG 61.083 60.000 13.48 13.48 45.38 4.41
7154 7471 6.043590 AGCCCATGACAATCTTATCACAGATA 59.956 38.462 0.00 0.00 32.84 1.98
7233 7550 2.038164 TGAAGCTGAAGTGCAGTGATCT 59.962 45.455 0.00 0.00 46.62 2.75
7326 7644 5.689835 TCTACATTTGCAATATACAGGGCA 58.310 37.500 0.00 0.00 0.00 5.36
7329 7647 4.650588 ACATTTGCAATATACAGGGCACAT 59.349 37.500 0.00 0.00 35.74 3.21
7332 7650 4.103013 TGCAATATACAGGGCACATCAT 57.897 40.909 0.00 0.00 0.00 2.45
7461 7819 1.340889 TGCTGAATTGCTTGGTTGTCC 59.659 47.619 0.00 0.00 0.00 4.02
7462 7820 1.337167 GCTGAATTGCTTGGTTGTCCC 60.337 52.381 0.00 0.00 0.00 4.46
7471 7829 3.245586 TGCTTGGTTGTCCCCTAATTGAT 60.246 43.478 0.00 0.00 0.00 2.57
7535 7893 1.464608 CCTTGTACAATCGTGCACCTG 59.535 52.381 12.15 8.91 37.48 4.00
7539 7897 0.034756 TACAATCGTGCACCTGCTGT 59.965 50.000 12.15 11.88 42.66 4.40
7567 7925 6.979817 TCCAAATCACAAGTTGACAAAAGATG 59.020 34.615 10.54 0.00 36.92 2.90
7569 7927 6.469782 AATCACAAGTTGACAAAAGATGGT 57.530 33.333 10.54 0.00 36.92 3.55
7570 7928 5.913137 TCACAAGTTGACAAAAGATGGTT 57.087 34.783 10.54 0.00 0.00 3.67
7571 7929 6.279513 TCACAAGTTGACAAAAGATGGTTT 57.720 33.333 10.54 0.00 0.00 3.27
7618 7990 5.670485 TCTATTTATACATGCGGGCTATGG 58.330 41.667 0.00 0.00 0.00 2.74
7620 7992 1.275666 TATACATGCGGGCTATGGCT 58.724 50.000 0.00 0.00 38.73 4.75
7626 7998 2.254464 GCGGGCTATGGCTGTTAGC 61.254 63.158 0.00 6.25 41.08 3.09
7674 8049 3.080300 TCCGTTACATTGGGCAATCTT 57.920 42.857 0.00 0.00 0.00 2.40
7675 8050 2.752354 TCCGTTACATTGGGCAATCTTG 59.248 45.455 0.00 0.00 0.00 3.02
7731 8106 4.989875 AGACCCATGATCCTTCCTTATG 57.010 45.455 0.00 0.00 0.00 1.90
7739 8114 3.051032 TGATCCTTCCTTATGTCCCCTCT 60.051 47.826 0.00 0.00 0.00 3.69
7766 8141 1.077265 CCTGGGTGTTGCCTGGAAT 59.923 57.895 0.00 0.00 37.43 3.01
7770 8145 1.984026 GGTGTTGCCTGGAATGGGG 60.984 63.158 0.00 0.00 0.00 4.96
7800 8176 4.206477 TGTCATTGATGTGGTCTCGAAT 57.794 40.909 0.00 0.00 0.00 3.34
7851 8227 2.561419 GGGTCGAATTGGATCTCCGATA 59.439 50.000 0.47 0.00 39.20 2.92
7872 8248 3.467803 ACTTATGAGATAAAGGCCACGC 58.532 45.455 5.01 0.00 0.00 5.34
7873 8249 3.118408 ACTTATGAGATAAAGGCCACGCA 60.118 43.478 5.01 0.00 0.00 5.24
7926 8302 7.048629 TGTTTCATGGAAATCTTGTAAGCAA 57.951 32.000 0.00 0.00 33.97 3.91
7951 8328 8.631480 AACCATTTGTTTAGGAAGGTAAGTAG 57.369 34.615 0.00 0.00 31.47 2.57
7960 8337 5.941555 AGGAAGGTAAGTAGACCATCTTG 57.058 43.478 0.00 0.00 42.47 3.02
8351 8728 2.236766 GTACCTAGCAGGGAAGCGATA 58.763 52.381 7.06 0.00 40.58 2.92
8398 8775 8.888716 AGAAGATGCTATATAGATAGTGTGACG 58.111 37.037 14.16 0.00 37.87 4.35
8404 8781 7.229907 TGCTATATAGATAGTGTGACGAAACCA 59.770 37.037 14.16 0.00 37.87 3.67
8405 8782 8.080417 GCTATATAGATAGTGTGACGAAACCAA 58.920 37.037 14.16 0.00 37.87 3.67
8411 8788 4.602340 AGTGTGACGAAACCAATAGTCT 57.398 40.909 0.00 0.00 34.92 3.24
8446 8823 3.877559 CTCACAACTTATCATGGGAGCA 58.122 45.455 0.00 0.00 39.97 4.26
8447 8824 3.875727 CTCACAACTTATCATGGGAGCAG 59.124 47.826 0.00 0.00 39.97 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.590073 TGCACACGTTTTGTTGAGTTG 58.410 42.857 0.00 0.00 35.67 3.16
1 2 2.999507 TGCACACGTTTTGTTGAGTT 57.000 40.000 0.00 0.00 35.67 3.01
2 3 4.829064 ATATGCACACGTTTTGTTGAGT 57.171 36.364 0.00 0.00 35.67 3.41
3 4 4.975502 ACAATATGCACACGTTTTGTTGAG 59.024 37.500 0.00 0.00 34.52 3.02
4 5 4.737279 CACAATATGCACACGTTTTGTTGA 59.263 37.500 0.00 0.00 35.56 3.18
5 6 4.992366 CACAATATGCACACGTTTTGTTG 58.008 39.130 0.00 0.00 35.56 3.33
39 40 0.745845 GATCGCACCTCCAAGCATGT 60.746 55.000 0.00 0.00 0.00 3.21
254 280 7.763528 AGAGCACTATGTTAATGAGAAAGACTG 59.236 37.037 0.00 0.00 0.00 3.51
256 282 9.757227 ATAGAGCACTATGTTAATGAGAAAGAC 57.243 33.333 2.58 0.00 37.85 3.01
273 299 4.020751 ACATGTCAGTTGTCATAGAGCACT 60.021 41.667 0.00 0.00 0.00 4.40
274 300 4.248859 ACATGTCAGTTGTCATAGAGCAC 58.751 43.478 0.00 0.00 0.00 4.40
333 368 7.613022 TCCAAGCTGAATCAAAAAGACTCATAT 59.387 33.333 0.00 0.00 31.19 1.78
334 369 6.942005 TCCAAGCTGAATCAAAAAGACTCATA 59.058 34.615 0.00 0.00 31.19 2.15
335 370 5.771666 TCCAAGCTGAATCAAAAAGACTCAT 59.228 36.000 0.00 0.00 31.19 2.90
342 377 5.221303 CCAGTTCTCCAAGCTGAATCAAAAA 60.221 40.000 0.00 0.00 32.39 1.94
349 384 2.172505 TGTTCCAGTTCTCCAAGCTGAA 59.827 45.455 0.00 0.00 32.39 3.02
358 393 3.807622 TGACATCGTTTGTTCCAGTTCTC 59.192 43.478 0.00 0.00 39.18 2.87
368 403 0.179004 TTGGGGCTGACATCGTTTGT 60.179 50.000 0.00 0.00 42.79 2.83
381 416 1.616159 TACTTGTCTGCTTTTGGGGC 58.384 50.000 0.00 0.00 0.00 5.80
394 429 4.024641 GGTTCGGTTTCGTTGATTACTTGT 60.025 41.667 0.00 0.00 37.69 3.16
397 432 3.731089 TGGTTCGGTTTCGTTGATTACT 58.269 40.909 0.00 0.00 37.69 2.24
405 440 1.667212 GACTTGTTGGTTCGGTTTCGT 59.333 47.619 0.00 0.00 37.69 3.85
412 447 3.857093 CCTTTTGTTGACTTGTTGGTTCG 59.143 43.478 0.00 0.00 0.00 3.95
420 455 9.965824 ATAGTCATTTAACCTTTTGTTGACTTG 57.034 29.630 7.84 0.00 37.54 3.16
421 456 9.965824 CATAGTCATTTAACCTTTTGTTGACTT 57.034 29.630 7.84 0.00 37.54 3.01
425 460 8.702438 CAAGCATAGTCATTTAACCTTTTGTTG 58.298 33.333 0.00 0.00 37.83 3.33
436 471 3.525609 TCCACCCCAAGCATAGTCATTTA 59.474 43.478 0.00 0.00 0.00 1.40
445 480 1.380785 CAGCATCCACCCCAAGCAT 60.381 57.895 0.00 0.00 0.00 3.79
446 481 2.036098 CAGCATCCACCCCAAGCA 59.964 61.111 0.00 0.00 0.00 3.91
476 522 1.743996 CAGGAGTAAAAGCAGAGCCC 58.256 55.000 0.00 0.00 0.00 5.19
482 528 2.290323 GGGAAGAGCAGGAGTAAAAGCA 60.290 50.000 0.00 0.00 0.00 3.91
489 535 0.832135 TGTTCGGGAAGAGCAGGAGT 60.832 55.000 0.00 0.00 35.09 3.85
491 537 0.034896 GTTGTTCGGGAAGAGCAGGA 59.965 55.000 0.00 0.00 41.10 3.86
503 549 6.721571 AGTATATGGAGTGTTTGTTGTTCG 57.278 37.500 0.00 0.00 0.00 3.95
525 571 7.979444 TTCCTCAAACACTGGAAACTATTAG 57.021 36.000 0.00 0.00 36.98 1.73
528 574 5.241728 GCTTTCCTCAAACACTGGAAACTAT 59.758 40.000 0.00 0.00 42.70 2.12
537 583 5.418840 TCTTTTCTTGCTTTCCTCAAACACT 59.581 36.000 0.00 0.00 0.00 3.55
541 609 6.713762 TCATCTTTTCTTGCTTTCCTCAAA 57.286 33.333 0.00 0.00 0.00 2.69
563 631 3.247173 GTCAATCTCATGCCGAGTTGATC 59.753 47.826 14.94 0.00 40.57 2.92
568 636 2.768253 TTGTCAATCTCATGCCGAGT 57.232 45.000 0.63 0.00 42.88 4.18
579 647 4.208873 TCGTTTTGCTGCATTTTGTCAATC 59.791 37.500 1.84 0.00 0.00 2.67
580 648 4.118410 TCGTTTTGCTGCATTTTGTCAAT 58.882 34.783 1.84 0.00 0.00 2.57
709 783 2.882955 ACCCACAGGTCCCAAGATT 58.117 52.632 0.00 0.00 46.45 2.40
790 864 4.024670 AGGTCGAGGAAGCTATACAAAGT 58.975 43.478 0.00 0.00 0.00 2.66
804 878 0.247736 CCTTCAGGAACAGGTCGAGG 59.752 60.000 0.00 0.00 37.39 4.63
875 949 1.702491 GGGTCGCGGCTTTGTATCAC 61.702 60.000 11.94 0.00 0.00 3.06
896 973 4.748144 CTGGGACTTGGGCTGGGC 62.748 72.222 0.00 0.00 0.00 5.36
914 991 1.362224 TTCTTGGTCCAGAGGAAGGG 58.638 55.000 0.00 0.00 31.38 3.95
915 992 3.728385 AATTCTTGGTCCAGAGGAAGG 57.272 47.619 0.00 0.00 31.38 3.46
933 1041 2.340328 GGGTGGAAAGCCGCGAAAT 61.340 57.895 8.23 0.00 45.87 2.17
977 1094 2.668550 GTTTTGCGGCGAGGAGGT 60.669 61.111 12.98 0.00 0.00 3.85
1125 1254 0.038526 GAAGAACAAGGAGCGACCGA 60.039 55.000 0.00 0.00 44.74 4.69
1133 1265 0.243907 CTCGGCGAGAAGAACAAGGA 59.756 55.000 32.07 0.00 0.00 3.36
1308 1446 2.686558 TTGCAGAACGCTGAACATTC 57.313 45.000 0.00 0.00 45.17 2.67
1324 1462 4.202111 ACATTTACCGAGCCCAATATTTGC 60.202 41.667 0.00 0.00 0.00 3.68
1325 1463 5.514274 ACATTTACCGAGCCCAATATTTG 57.486 39.130 0.00 0.00 0.00 2.32
1326 1464 5.163457 CCAACATTTACCGAGCCCAATATTT 60.163 40.000 0.00 0.00 0.00 1.40
1327 1465 4.340950 CCAACATTTACCGAGCCCAATATT 59.659 41.667 0.00 0.00 0.00 1.28
1328 1466 3.888930 CCAACATTTACCGAGCCCAATAT 59.111 43.478 0.00 0.00 0.00 1.28
1329 1467 3.283751 CCAACATTTACCGAGCCCAATA 58.716 45.455 0.00 0.00 0.00 1.90
1331 1469 1.202952 ACCAACATTTACCGAGCCCAA 60.203 47.619 0.00 0.00 0.00 4.12
1346 1494 0.310854 CCACTTTTCAGGCGACCAAC 59.689 55.000 0.00 0.00 0.00 3.77
1399 1553 4.669866 TCAACCTGGTAACTCTCCTCTA 57.330 45.455 0.00 0.00 37.61 2.43
1436 1590 2.615493 CCTAGGCTGTGACGGTTTTCAT 60.615 50.000 0.00 0.00 0.00 2.57
1469 1624 3.621794 CAGTGTTGTGCTGTAGCTTTTC 58.378 45.455 5.38 0.00 42.66 2.29
1507 1664 2.489329 CAATTGTGCAACCTCTCCGATT 59.511 45.455 0.00 0.00 34.36 3.34
1534 1691 0.247736 ACCAGAGAAGTGACGATGCC 59.752 55.000 0.00 0.00 0.00 4.40
1535 1692 1.996191 GAACCAGAGAAGTGACGATGC 59.004 52.381 0.00 0.00 0.00 3.91
1540 1697 2.028567 CAGGGAGAACCAGAGAAGTGAC 60.029 54.545 0.00 0.00 43.89 3.67
1580 1737 1.373748 TCTACGGTCGTTTGCAGCC 60.374 57.895 0.16 0.00 0.00 4.85
1581 1738 0.942410 TGTCTACGGTCGTTTGCAGC 60.942 55.000 0.16 0.00 0.00 5.25
1591 1748 0.250166 GTGTGGGCTTTGTCTACGGT 60.250 55.000 0.00 0.00 0.00 4.83
1596 1753 2.594592 GCGGTGTGGGCTTTGTCT 60.595 61.111 0.00 0.00 0.00 3.41
1639 1796 1.063492 TGGCTGATTCTTGGCATGGAT 60.063 47.619 0.00 0.00 33.80 3.41
1641 1798 0.458669 GTGGCTGATTCTTGGCATGG 59.541 55.000 0.00 0.00 40.72 3.66
1663 1821 1.811266 GATGCACTGTCGGCGATGT 60.811 57.895 14.79 12.87 0.00 3.06
1674 1832 0.179000 GTCAGAATCGGGGATGCACT 59.821 55.000 0.00 0.00 0.00 4.40
1685 1843 6.035112 GTCCTTTGTATCTCGTTGTCAGAATC 59.965 42.308 0.00 0.00 0.00 2.52
1695 1853 6.112734 TGCATATTTGTCCTTTGTATCTCGT 58.887 36.000 0.00 0.00 0.00 4.18
1704 1862 4.020307 CCCAACCTTGCATATTTGTCCTTT 60.020 41.667 0.00 0.00 0.00 3.11
1710 1868 1.134431 GGCCCCAACCTTGCATATTTG 60.134 52.381 0.00 0.00 0.00 2.32
1723 1881 1.228706 TGATCTTTTGCGGCCCCAA 60.229 52.632 0.00 0.00 0.00 4.12
1728 1886 1.269517 TGTTTGGTGATCTTTTGCGGC 60.270 47.619 0.00 0.00 0.00 6.53
1744 1902 4.642429 GACAGGTGATAAGTGGTCTGTTT 58.358 43.478 0.00 0.00 35.87 2.83
1748 1906 2.492484 GACGACAGGTGATAAGTGGTCT 59.508 50.000 0.00 0.00 37.80 3.85
1767 1925 1.731720 GGAGCTCAGTTGGTGATGAC 58.268 55.000 17.19 0.00 33.51 3.06
1832 1990 2.050351 CTTCGACGTGTCCGCTGT 60.050 61.111 0.00 0.00 37.70 4.40
1878 2036 1.626654 CGGTGGTGAGCAATGTCGAC 61.627 60.000 9.11 9.11 0.00 4.20
1943 2101 3.345747 TGGAGGGGCCAATGGATC 58.654 61.111 2.05 0.00 45.87 3.36
2012 2170 3.697166 GGAGTGGAATTAATGGTGGTGT 58.303 45.455 0.00 0.00 0.00 4.16
2022 2180 3.118038 CAGATTTCCCCGGAGTGGAATTA 60.118 47.826 10.98 0.00 41.36 1.40
2023 2181 1.923148 AGATTTCCCCGGAGTGGAATT 59.077 47.619 10.98 8.01 41.36 2.17
2029 2187 0.252742 ACCTCAGATTTCCCCGGAGT 60.253 55.000 0.73 0.00 0.00 3.85
2145 2307 0.193574 TCCTTCCTCCCAGACAACCT 59.806 55.000 0.00 0.00 0.00 3.50
2183 2346 3.076621 TCTTCACGAGCCTACGTTCTAA 58.923 45.455 0.00 0.00 44.76 2.10
2230 2397 4.075682 TCATGTTTGTAATTCTTGGCCGA 58.924 39.130 0.00 0.00 0.00 5.54
2237 2404 8.143193 TGCTGTTTGAATCATGTTTGTAATTCT 58.857 29.630 0.00 0.00 0.00 2.40
2261 2429 2.281208 TACCAGTGTGGCCGTTGC 60.281 61.111 0.00 0.00 42.67 4.17
2297 2465 2.162408 GAGGCTGTAGTTGATGTTTGCC 59.838 50.000 0.00 0.00 39.40 4.52
2340 2508 6.088016 TGTGCAAGCTGTAATCTTCATTTT 57.912 33.333 0.00 0.00 0.00 1.82
2366 2534 5.480422 TCTGATCTTAGTGTGGAGTGCTTAA 59.520 40.000 0.00 0.00 0.00 1.85
2415 2583 1.202842 TCGATGGTCGGCTATGTCCTA 60.203 52.381 0.00 0.00 40.88 2.94
2443 2611 5.607171 CCTTCCCTATCTACCTGGTACATTT 59.393 44.000 1.49 0.00 38.20 2.32
2445 2613 4.422592 TCCTTCCCTATCTACCTGGTACAT 59.577 45.833 1.49 0.79 38.20 2.29
2448 2616 3.401683 CCTCCTTCCCTATCTACCTGGTA 59.598 52.174 6.36 6.36 0.00 3.25
2570 2741 2.825836 CCTTGCGATGTGAGGGCC 60.826 66.667 0.00 0.00 0.00 5.80
2699 2870 0.886563 GCTTGATGTCTTGCTGCCTT 59.113 50.000 0.00 0.00 0.00 4.35
2708 2879 4.070716 CTCTTGGTCTTTGCTTGATGTCT 58.929 43.478 0.00 0.00 0.00 3.41
2713 2884 2.811873 GCCTCTCTTGGTCTTTGCTTGA 60.812 50.000 0.00 0.00 0.00 3.02
2715 2886 1.143684 TGCCTCTCTTGGTCTTTGCTT 59.856 47.619 0.00 0.00 0.00 3.91
2738 2909 1.228583 TCGCCGATGCTCTATCCCT 60.229 57.895 0.00 0.00 34.43 4.20
2753 2924 0.179200 CGCCTGGTTAACAATGTCGC 60.179 55.000 8.10 0.00 0.00 5.19
2762 2933 2.998480 TCGGAGGCGCCTGGTTAA 60.998 61.111 38.41 11.87 0.00 2.01
2827 2998 2.881074 CACGACGTCTTCAATCCTGAT 58.119 47.619 14.70 0.00 0.00 2.90
2849 3020 3.691342 CTTCACTCGGTCCCGGCA 61.691 66.667 5.80 0.00 40.25 5.69
3010 3181 0.525882 GCTAGTCTCGAAGTTCGGGC 60.526 60.000 24.18 16.70 40.86 6.13
3018 3189 1.174783 GTGGTCCAGCTAGTCTCGAA 58.825 55.000 0.00 0.00 0.00 3.71
3039 3210 2.967946 CGGTTGGGGAGGGGAGTTC 61.968 68.421 0.00 0.00 0.00 3.01
3099 3270 0.032615 TAGATTTTGCCGGCCCCATT 60.033 50.000 26.77 7.86 0.00 3.16
3108 3279 6.407202 TCCTTCTCTAGTTGTAGATTTTGCC 58.593 40.000 0.00 0.00 34.63 4.52
3174 3345 0.101399 GACTGGTCATGAGCGTCGAT 59.899 55.000 23.67 9.12 0.00 3.59
3192 3363 0.323999 TCCTACTGGCTTGGCTACGA 60.324 55.000 0.00 0.00 0.00 3.43
3229 3400 5.682730 GCTCTTTATAGTGAGACAACTCCCC 60.683 48.000 7.87 0.00 41.99 4.81
3244 3415 5.886992 TCGACGATGTTGAAGCTCTTTATA 58.113 37.500 0.00 0.00 0.00 0.98
3245 3416 4.744570 TCGACGATGTTGAAGCTCTTTAT 58.255 39.130 0.00 0.00 0.00 1.40
3246 3417 4.168922 TCGACGATGTTGAAGCTCTTTA 57.831 40.909 0.00 0.00 0.00 1.85
3313 3484 1.746991 GCTCTAGCAACACAGGCCC 60.747 63.158 0.00 0.00 41.59 5.80
3323 3494 0.835276 ACATCTGCATGGCTCTAGCA 59.165 50.000 4.07 0.00 44.36 3.49
3330 3501 1.227639 CTGCTCTACATCTGCATGGC 58.772 55.000 0.00 0.00 36.07 4.40
3376 3547 4.700365 GGCGTCGCTGGGCAAAAC 62.700 66.667 18.11 0.00 0.00 2.43
3419 3590 0.988145 TTCCTGCCCCCTATCACCTG 60.988 60.000 0.00 0.00 0.00 4.00
3434 3606 1.075536 GAGTCCCAAACCCACATTCCT 59.924 52.381 0.00 0.00 0.00 3.36
3451 3623 3.461773 CGAGCATCACCGGGGAGT 61.462 66.667 14.24 0.00 33.17 3.85
3458 3630 1.335496 GACTACTCTCCGAGCATCACC 59.665 57.143 0.00 0.00 32.04 4.02
3600 3794 4.636206 GTGCAGAAAAATAGGGGTAGACTG 59.364 45.833 0.00 0.00 0.00 3.51
3618 3812 3.114616 CGCCACGGAGAAGTGCAG 61.115 66.667 0.00 0.00 40.59 4.41
3634 3828 1.597663 GGTATGAAATTGGGAGCGACG 59.402 52.381 0.00 0.00 0.00 5.12
3636 3830 2.503765 TCAGGTATGAAATTGGGAGCGA 59.496 45.455 0.00 0.00 30.61 4.93
3648 3842 1.294068 ACCCCTTAGCCTCAGGTATGA 59.706 52.381 0.00 0.00 0.00 2.15
3669 3863 7.189693 TGAAATGCAATATACGAATGTCTCC 57.810 36.000 0.00 0.00 0.00 3.71
3773 3967 3.393426 AGGAACGGAGGGAGTATAACA 57.607 47.619 0.00 0.00 0.00 2.41
3780 3974 1.569653 ACCTTTAGGAACGGAGGGAG 58.430 55.000 2.06 0.00 38.94 4.30
3781 3975 2.925966 TACCTTTAGGAACGGAGGGA 57.074 50.000 2.06 0.00 38.94 4.20
3782 3976 2.836372 ACTTACCTTTAGGAACGGAGGG 59.164 50.000 2.06 0.00 38.94 4.30
3783 3977 3.768215 AGACTTACCTTTAGGAACGGAGG 59.232 47.826 2.06 0.00 38.94 4.30
3784 3978 5.402997 AAGACTTACCTTTAGGAACGGAG 57.597 43.478 2.06 0.00 38.94 4.63
3785 3979 5.813513 AAAGACTTACCTTTAGGAACGGA 57.186 39.130 2.06 0.00 38.94 4.69
3786 3980 6.872628 AAAAAGACTTACCTTTAGGAACGG 57.127 37.500 2.06 0.00 35.50 4.44
3818 4012 9.929180 GTTTGCTCTATATGTAGTCCATATTGA 57.071 33.333 0.00 0.00 42.87 2.57
3819 4013 9.935241 AGTTTGCTCTATATGTAGTCCATATTG 57.065 33.333 0.00 0.00 42.87 1.90
3820 4014 9.935241 CAGTTTGCTCTATATGTAGTCCATATT 57.065 33.333 0.00 0.00 42.87 1.28
3821 4015 9.314133 TCAGTTTGCTCTATATGTAGTCCATAT 57.686 33.333 0.00 0.00 46.28 1.78
3822 4016 8.706322 TCAGTTTGCTCTATATGTAGTCCATA 57.294 34.615 0.00 0.00 40.27 2.74
3823 4017 7.288852 ACTCAGTTTGCTCTATATGTAGTCCAT 59.711 37.037 0.00 0.00 37.58 3.41
3824 4018 6.607600 ACTCAGTTTGCTCTATATGTAGTCCA 59.392 38.462 0.00 0.00 0.00 4.02
3825 4019 6.920758 CACTCAGTTTGCTCTATATGTAGTCC 59.079 42.308 0.00 0.00 0.00 3.85
3826 4020 7.708051 TCACTCAGTTTGCTCTATATGTAGTC 58.292 38.462 0.00 0.00 0.00 2.59
3827 4021 7.646548 TCACTCAGTTTGCTCTATATGTAGT 57.353 36.000 0.00 0.00 0.00 2.73
3828 4022 9.190858 GATTCACTCAGTTTGCTCTATATGTAG 57.809 37.037 0.00 0.00 0.00 2.74
3829 4023 8.918116 AGATTCACTCAGTTTGCTCTATATGTA 58.082 33.333 0.00 0.00 0.00 2.29
3830 4024 7.790027 AGATTCACTCAGTTTGCTCTATATGT 58.210 34.615 0.00 0.00 0.00 2.29
3831 4025 9.190858 GTAGATTCACTCAGTTTGCTCTATATG 57.809 37.037 0.00 0.00 0.00 1.78
3832 4026 8.918116 TGTAGATTCACTCAGTTTGCTCTATAT 58.082 33.333 0.00 0.00 0.00 0.86
3833 4027 8.191446 GTGTAGATTCACTCAGTTTGCTCTATA 58.809 37.037 0.00 0.00 35.68 1.31
3834 4028 7.038659 GTGTAGATTCACTCAGTTTGCTCTAT 58.961 38.462 0.00 0.00 35.68 1.98
3835 4029 6.209589 AGTGTAGATTCACTCAGTTTGCTCTA 59.790 38.462 0.00 0.00 44.07 2.43
3836 4030 5.011533 AGTGTAGATTCACTCAGTTTGCTCT 59.988 40.000 0.00 0.00 44.07 4.09
3837 4031 5.233988 AGTGTAGATTCACTCAGTTTGCTC 58.766 41.667 0.00 0.00 44.07 4.26
3838 4032 5.220710 AGTGTAGATTCACTCAGTTTGCT 57.779 39.130 0.00 0.00 44.07 3.91
3875 4069 9.350951 CCAATATGGACTAGATACGGATGTATA 57.649 37.037 0.00 0.00 39.64 1.47
3876 4070 8.059461 TCCAATATGGACTAGATACGGATGTAT 58.941 37.037 0.00 0.00 42.67 2.29
3877 4071 7.407729 TCCAATATGGACTAGATACGGATGTA 58.592 38.462 0.00 0.00 42.67 2.29
3878 4072 6.253758 TCCAATATGGACTAGATACGGATGT 58.746 40.000 0.00 0.00 42.67 3.06
3879 4073 6.775594 TCCAATATGGACTAGATACGGATG 57.224 41.667 0.00 0.00 42.67 3.51
3898 4092 9.847224 AGTCTGTTTAGTTTTTAGAGATTCCAA 57.153 29.630 0.00 0.00 0.00 3.53
3899 4093 9.847224 AAGTCTGTTTAGTTTTTAGAGATTCCA 57.153 29.630 0.00 0.00 0.00 3.53
3913 4107 9.813446 CCGTTCCTAAATATAAGTCTGTTTAGT 57.187 33.333 0.00 0.00 34.12 2.24
3916 4110 7.985752 CCTCCGTTCCTAAATATAAGTCTGTTT 59.014 37.037 0.00 0.00 0.00 2.83
3917 4111 7.418712 CCCTCCGTTCCTAAATATAAGTCTGTT 60.419 40.741 0.00 0.00 0.00 3.16
3918 4112 6.041751 CCCTCCGTTCCTAAATATAAGTCTGT 59.958 42.308 0.00 0.00 0.00 3.41
3919 4113 6.267014 TCCCTCCGTTCCTAAATATAAGTCTG 59.733 42.308 0.00 0.00 0.00 3.51
3920 4114 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3921 4115 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3922 4116 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3923 4117 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3924 4118 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
3925 4119 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
3926 4120 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3927 4121 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3928 4122 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3929 4123 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3930 4124 3.245371 TGAACTACTCCCTCCGTTCCTAA 60.245 47.826 0.00 0.00 35.97 2.69
3931 4125 2.309755 TGAACTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 35.97 2.94
3932 4126 1.076677 TGAACTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 35.97 3.36
3933 4127 1.553706 TGAACTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 35.97 3.62
3934 4128 4.341520 ACATATGAACTACTCCCTCCGTTC 59.658 45.833 10.38 0.00 37.02 3.95
3935 4129 4.099573 CACATATGAACTACTCCCTCCGTT 59.900 45.833 10.38 0.00 0.00 4.44
3936 4130 3.637229 CACATATGAACTACTCCCTCCGT 59.363 47.826 10.38 0.00 0.00 4.69
3937 4131 3.889538 TCACATATGAACTACTCCCTCCG 59.110 47.826 10.38 0.00 0.00 4.63
3938 4132 5.871396 TTCACATATGAACTACTCCCTCC 57.129 43.478 10.38 0.00 40.01 4.30
3961 4155 5.749109 GGTGTGACTACAAAGATAGAATCCG 59.251 44.000 0.00 0.00 38.82 4.18
4036 4230 8.582437 TCATGGATTAGGTTACGGAACTAATAG 58.418 37.037 11.02 3.09 35.74 1.73
4043 4237 7.792364 ATAGATCATGGATTAGGTTACGGAA 57.208 36.000 0.00 0.00 0.00 4.30
4176 4370 6.816640 GCATGGGATTATCATTTGATGGAATG 59.183 38.462 3.30 0.00 38.16 2.67
4217 4411 8.861033 ATCATACATGTATTTGTGCATGAAAC 57.139 30.769 15.85 0.00 43.60 2.78
4315 4603 5.479306 TGGTAGTCAATAGCACAAGACTTC 58.521 41.667 7.11 3.26 41.27 3.01
4335 4623 6.380079 AGATTTCAGAGAATACAACCTGGT 57.620 37.500 0.00 0.00 0.00 4.00
4370 4658 1.873591 CACTTCCTCAACTTTGGACCG 59.126 52.381 0.00 0.00 31.24 4.79
4526 4816 6.677552 TCCTCGATATCTATTCTCATCCCAT 58.322 40.000 0.34 0.00 0.00 4.00
4652 4942 5.023452 AGTGACATACTGAACATAGGACCA 58.977 41.667 0.00 0.00 38.49 4.02
4661 4951 8.344098 GGTATAGTGACTAGTGACATACTGAAC 58.656 40.741 21.75 10.09 40.65 3.18
4701 4991 4.393990 TGTTCAGCTCATAGCACAAGAATG 59.606 41.667 1.22 0.00 45.56 2.67
4805 5096 9.118236 GTTTACATTGTAGAGAAAATCTTGTGC 57.882 33.333 0.00 0.00 39.64 4.57
4842 5133 6.321181 TGCAGAAAGAACTCTTTTATGTTGGT 59.679 34.615 6.18 0.00 45.37 3.67
4843 5134 6.738114 TGCAGAAAGAACTCTTTTATGTTGG 58.262 36.000 6.18 0.00 45.37 3.77
4844 5135 8.633075 TTTGCAGAAAGAACTCTTTTATGTTG 57.367 30.769 6.18 2.98 45.37 3.33
4846 5137 9.468532 GAATTTGCAGAAAGAACTCTTTTATGT 57.531 29.630 6.18 0.00 45.37 2.29
4847 5138 9.688592 AGAATTTGCAGAAAGAACTCTTTTATG 57.311 29.630 6.18 9.24 45.37 1.90
4909 5208 0.468226 ACGCCAGTTGAGTCTTTCCA 59.532 50.000 0.00 0.00 0.00 3.53
4910 5209 1.531578 GAACGCCAGTTGAGTCTTTCC 59.468 52.381 0.00 0.00 41.34 3.13
4926 5225 4.795795 GCGACATCTGAGGATATATGAACG 59.204 45.833 0.00 0.00 0.00 3.95
4974 5273 8.103305 AGAAATAGCAACAAAGAACTCTGGATA 58.897 33.333 0.00 0.00 0.00 2.59
4975 5274 6.944862 AGAAATAGCAACAAAGAACTCTGGAT 59.055 34.615 0.00 0.00 0.00 3.41
5107 5407 4.934356 TGGCCCTTTTCAGAATTAGTGAT 58.066 39.130 0.00 0.00 0.00 3.06
5188 5488 5.336770 GGGAGAATTCAAAATTGTCACCTCC 60.337 44.000 8.44 9.10 34.96 4.30
5351 5651 3.570975 ACGAACACCCCTTAATGTTTTCC 59.429 43.478 0.00 0.00 39.13 3.13
5451 5751 4.989168 GTGCATAGAACGGAAATAGTAGGG 59.011 45.833 0.00 0.00 0.00 3.53
5493 5793 4.174009 TGAGCTGAGTAACTCGTTTATGC 58.826 43.478 0.00 0.00 35.61 3.14
5514 5814 6.721321 ACTAACATCAAAGTACCAAACGTTG 58.279 36.000 0.00 0.00 45.57 4.10
5515 5815 6.930667 ACTAACATCAAAGTACCAAACGTT 57.069 33.333 0.00 0.00 0.00 3.99
5574 5874 3.740832 CACAAGAGCACGTCTCAATAACA 59.259 43.478 14.62 0.00 44.35 2.41
5636 5937 9.337396 ACTGTACAAACTTTCAATTCTCATACA 57.663 29.630 0.00 0.00 0.00 2.29
5647 5948 6.481976 CACCAGATACACTGTACAAACTTTCA 59.518 38.462 0.00 0.00 44.40 2.69
5706 6007 8.706035 AGTATCGAACACACAACTAAATTACAC 58.294 33.333 0.00 0.00 0.00 2.90
5750 6051 2.294512 GCCACAAGGAAAAGGAAGTCTG 59.705 50.000 0.00 0.00 36.89 3.51
5796 6097 2.151202 GAAGGTCAACGCAATCAAGGA 58.849 47.619 0.00 0.00 0.00 3.36
5807 6108 7.945033 TGAAAATTTGCAATAGAAGGTCAAC 57.055 32.000 0.00 0.00 0.00 3.18
6011 6312 5.188434 AGCTTGCTGTTCATAATAGCTTGA 58.812 37.500 9.35 0.00 44.82 3.02
6053 6354 2.087646 GCAAGAACCACCTCTTCATCC 58.912 52.381 0.00 0.00 33.25 3.51
6056 6357 2.373169 AGATGCAAGAACCACCTCTTCA 59.627 45.455 0.00 0.00 33.25 3.02
6179 6486 4.408182 TTGGAGAGATAAGGTAGCAAGC 57.592 45.455 0.00 0.00 0.00 4.01
6180 6487 8.997323 CATTATTTGGAGAGATAAGGTAGCAAG 58.003 37.037 0.00 0.00 0.00 4.01
6181 6488 8.494433 ACATTATTTGGAGAGATAAGGTAGCAA 58.506 33.333 0.00 0.00 32.79 3.91
6182 6489 8.034313 ACATTATTTGGAGAGATAAGGTAGCA 57.966 34.615 0.00 0.00 32.79 3.49
6201 6508 8.046294 TGTTGGTCTAAATTACGCAACATTAT 57.954 30.769 0.00 0.00 35.26 1.28
6283 6593 0.865111 TGACAAAGACCATTGCGTCG 59.135 50.000 0.00 0.00 37.85 5.12
6422 6739 8.034313 ACCATATGAAAAGATACTCTTGCCTA 57.966 34.615 3.65 0.00 36.71 3.93
6588 6905 7.760131 ATTGGAAATGAATAATGTTCAAGCG 57.240 32.000 0.00 0.00 31.55 4.68
6628 6945 5.404366 TGCGTTCATAGAACACTACTTTCAC 59.596 40.000 10.15 0.00 0.00 3.18
6650 6967 4.018484 AGAATCCTAGATCAGGCATTGC 57.982 45.455 0.00 0.00 45.10 3.56
6653 6970 4.667573 TCGTAGAATCCTAGATCAGGCAT 58.332 43.478 0.00 0.00 45.10 4.40
6766 7083 6.096673 ACGCTGTGATACCATGTATTGATA 57.903 37.500 0.00 0.00 0.00 2.15
7018 7335 1.879380 ACGTGTGTTCCAATCATGTGG 59.121 47.619 0.00 0.00 40.33 4.17
7129 7446 4.164796 TCTGTGATAAGATTGTCATGGGCT 59.835 41.667 0.00 0.00 30.97 5.19
7130 7447 4.454678 TCTGTGATAAGATTGTCATGGGC 58.545 43.478 0.00 0.00 30.97 5.36
7154 7471 4.244862 GGAAATCCACGCATTTTGTTCAT 58.755 39.130 0.00 0.00 35.64 2.57
7299 7617 8.960591 GCCCTGTATATTGCAAATGTAGATTAT 58.039 33.333 1.71 0.00 0.00 1.28
7322 7640 4.009675 TGAGTTTAACAGATGATGTGCCC 58.990 43.478 0.00 0.00 43.00 5.36
7326 7644 9.903682 CAAAAGAATGAGTTTAACAGATGATGT 57.096 29.630 0.00 0.00 46.97 3.06
7329 7647 7.014134 TGGCAAAAGAATGAGTTTAACAGATGA 59.986 33.333 0.00 0.00 0.00 2.92
7332 7650 6.707440 TGGCAAAAGAATGAGTTTAACAGA 57.293 33.333 0.00 0.00 0.00 3.41
7390 7708 8.248945 AAGATTAGCTTTCACATCCTTTTGATG 58.751 33.333 0.00 0.80 44.60 3.07
7413 7731 9.461312 AAATAGTGCCTGACAATATTAACAAGA 57.539 29.630 0.00 0.00 46.06 3.02
7430 7748 3.129988 AGCAATTCAGCAGAAATAGTGCC 59.870 43.478 13.03 1.79 42.24 5.01
7461 7819 7.178451 AAACAAGAGTTACCCAATCAATTAGGG 59.822 37.037 0.00 0.00 42.03 3.53
7462 7820 7.703058 AACAAGAGTTACCCAATCAATTAGG 57.297 36.000 0.00 0.00 35.85 2.69
7471 7829 7.348033 TCTTTAGGAAAACAAGAGTTACCCAA 58.652 34.615 0.00 0.00 36.84 4.12
7535 7893 5.858581 GTCAACTTGTGATTTGGATAACAGC 59.141 40.000 0.00 0.00 38.90 4.40
7539 7897 8.690884 TCTTTTGTCAACTTGTGATTTGGATAA 58.309 29.630 0.00 0.00 38.90 1.75
7567 7925 2.863809 ACCTCCTCAACATCACAAACC 58.136 47.619 0.00 0.00 0.00 3.27
7569 7927 4.441356 GCAAAACCTCCTCAACATCACAAA 60.441 41.667 0.00 0.00 0.00 2.83
7570 7928 3.068024 GCAAAACCTCCTCAACATCACAA 59.932 43.478 0.00 0.00 0.00 3.33
7571 7929 2.622942 GCAAAACCTCCTCAACATCACA 59.377 45.455 0.00 0.00 0.00 3.58
7626 7998 4.499183 GAATCCGATGGATAGCTACCAAG 58.501 47.826 15.93 13.15 42.27 3.61
7665 8040 5.976458 TCCATTTAAATCACAAGATTGCCC 58.024 37.500 0.00 0.00 43.52 5.36
7674 8049 9.713684 AGGGAGATATTTTCCATTTAAATCACA 57.286 29.630 0.00 0.00 36.40 3.58
7731 8106 1.382833 GGTGGGGACTAGAGGGGAC 60.383 68.421 0.00 0.00 0.00 4.46
7761 8136 0.186630 CATCTCCATGCCCCATTCCA 59.813 55.000 0.00 0.00 0.00 3.53
7766 8141 0.928505 AATGACATCTCCATGCCCCA 59.071 50.000 0.00 0.00 32.57 4.96
7770 8145 3.004419 CCACATCAATGACATCTCCATGC 59.996 47.826 0.00 0.00 32.57 4.06
7772 8147 4.165565 AGACCACATCAATGACATCTCCAT 59.834 41.667 0.00 0.00 0.00 3.41
7800 8176 6.480763 TCCCTTTAGATTGTGCATGACTTTA 58.519 36.000 0.00 0.00 0.00 1.85
7851 8227 3.118408 TGCGTGGCCTTTATCTCATAAGT 60.118 43.478 3.32 0.00 0.00 2.24
7903 8279 7.095649 GGTTTGCTTACAAGATTTCCATGAAAC 60.096 37.037 0.00 0.00 37.04 2.78
7926 8302 8.442374 TCTACTTACCTTCCTAAACAAATGGTT 58.558 33.333 0.00 0.00 42.98 3.67
7960 8337 2.303311 AGCTTCCACTCTTGACCTTACC 59.697 50.000 0.00 0.00 0.00 2.85
7963 8340 2.050144 TCAGCTTCCACTCTTGACCTT 58.950 47.619 0.00 0.00 0.00 3.50
8204 8581 9.439537 GTCTAACAGATTCTTTGTTCTTTGTTC 57.560 33.333 0.00 0.00 39.36 3.18
8206 8583 7.013369 GGGTCTAACAGATTCTTTGTTCTTTGT 59.987 37.037 0.00 0.00 39.36 2.83
8207 8584 7.363431 GGGTCTAACAGATTCTTTGTTCTTTG 58.637 38.462 0.00 0.00 39.36 2.77
8208 8585 6.490381 GGGGTCTAACAGATTCTTTGTTCTTT 59.510 38.462 0.00 0.00 39.36 2.52
8209 8586 6.004574 GGGGTCTAACAGATTCTTTGTTCTT 58.995 40.000 0.00 0.00 39.36 2.52
8210 8587 5.310857 AGGGGTCTAACAGATTCTTTGTTCT 59.689 40.000 0.00 0.00 39.36 3.01
8211 8588 5.561679 AGGGGTCTAACAGATTCTTTGTTC 58.438 41.667 0.00 0.00 39.36 3.18
8212 8589 5.584551 AGGGGTCTAACAGATTCTTTGTT 57.415 39.130 0.00 0.00 41.36 2.83
8213 8590 5.073144 TGAAGGGGTCTAACAGATTCTTTGT 59.927 40.000 0.00 0.00 0.00 2.83
8273 8650 2.774234 GACTCATTCCCATCTCCCTCAA 59.226 50.000 0.00 0.00 0.00 3.02
8275 8652 1.696884 GGACTCATTCCCATCTCCCTC 59.303 57.143 0.00 0.00 38.70 4.30
8295 8672 3.009695 TGGGGTCCCAATGTAAGTAAGTG 59.990 47.826 10.98 0.00 44.12 3.16
8398 8775 6.325286 AGTCCATCTCCTAGACTATTGGTTTC 59.675 42.308 0.00 0.00 39.06 2.78
8404 8781 7.147284 TGTGAGTAGTCCATCTCCTAGACTATT 60.147 40.741 2.74 0.00 43.12 1.73
8405 8782 6.330514 TGTGAGTAGTCCATCTCCTAGACTAT 59.669 42.308 2.74 0.00 43.12 2.12
8411 8788 5.194473 AGTTGTGAGTAGTCCATCTCCTA 57.806 43.478 0.00 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.