Multiple sequence alignment - TraesCS6D01G050300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G050300 chr6D 100.000 2962 0 0 1 2962 24263692 24260731 0.000000e+00 5470.0
1 TraesCS6D01G050300 chr6D 87.476 1054 77 19 971 1999 24231402 24230379 0.000000e+00 1164.0
2 TraesCS6D01G050300 chr6D 80.576 139 23 4 374 511 24231992 24231857 1.450000e-18 104.0
3 TraesCS6D01G050300 chr6D 92.857 70 4 1 2054 2123 24230383 24230315 1.880000e-17 100.0
4 TraesCS6D01G050300 chr6A 93.300 2209 101 19 567 2750 22804878 22802692 0.000000e+00 3216.0
5 TraesCS6D01G050300 chr6A 87.598 1024 86 20 971 1992 22696441 22695457 0.000000e+00 1149.0
6 TraesCS6D01G050300 chr6A 84.937 478 47 17 596 1069 42148182 42147726 7.480000e-126 460.0
7 TraesCS6D01G050300 chr6A 84.310 478 50 17 596 1069 11802510 11802966 7.530000e-121 444.0
8 TraesCS6D01G050300 chr6A 84.100 478 51 17 596 1069 124864321 124864777 3.500000e-119 438.0
9 TraesCS6D01G050300 chr6A 84.718 373 26 12 51 419 22805677 22805332 7.860000e-91 344.0
10 TraesCS6D01G050300 chr6A 90.688 247 20 2 825 1069 426028578 426028333 2.850000e-85 326.0
11 TraesCS6D01G050300 chr6A 90.860 186 10 1 577 755 22805138 22804953 2.950000e-60 243.0
12 TraesCS6D01G050300 chr6A 91.089 101 8 1 290 390 11802154 11802253 5.150000e-28 135.0
13 TraesCS6D01G050300 chr6A 89.362 47 5 0 2009 2055 178448913 178448959 3.190000e-05 60.2
14 TraesCS6D01G050300 chr6B 89.405 2218 138 36 577 2750 39340267 39338103 0.000000e+00 2704.0
15 TraesCS6D01G050300 chr6B 87.731 1027 91 12 976 1999 39199058 39198064 0.000000e+00 1166.0
16 TraesCS6D01G050300 chr6B 86.275 204 16 6 51 254 39341292 39341101 8.320000e-51 211.0
17 TraesCS6D01G050300 chr6B 83.111 225 16 9 276 480 39340593 39340371 5.040000e-43 185.0
18 TraesCS6D01G050300 chr6B 80.617 227 21 9 2255 2481 39209405 39209202 1.420000e-33 154.0
19 TraesCS6D01G050300 chr6B 97.297 37 1 0 577 613 39199403 39199367 2.460000e-06 63.9
20 TraesCS6D01G050300 chr5A 88.846 771 69 10 942 1708 465110990 465111747 0.000000e+00 931.0
21 TraesCS6D01G050300 chr5B 88.672 768 75 7 942 1708 166168043 166167287 0.000000e+00 926.0
22 TraesCS6D01G050300 chr5B 88.542 768 76 7 942 1708 165776708 165775952 0.000000e+00 920.0
23 TraesCS6D01G050300 chr5B 92.500 40 3 0 2701 2740 276793691 276793652 1.150000e-04 58.4
24 TraesCS6D01G050300 chr2A 88.457 771 72 9 942 1708 425813441 425812684 0.000000e+00 915.0
25 TraesCS6D01G050300 chr2A 83.891 478 52 17 596 1069 190871271 190870815 1.630000e-117 433.0
26 TraesCS6D01G050300 chr2A 82.587 201 17 8 290 473 496132689 496132490 8.500000e-36 161.0
27 TraesCS6D01G050300 chr2A 83.333 132 19 2 290 419 190871625 190871495 5.190000e-23 119.0
28 TraesCS6D01G050300 chr3D 86.832 767 85 9 942 1701 459468826 459468069 0.000000e+00 843.0
29 TraesCS6D01G050300 chr3D 90.741 54 5 0 2009 2062 454235633 454235686 4.100000e-09 73.1
30 TraesCS6D01G050300 chr3D 100.000 29 0 0 1890 1918 459468063 459468035 1.000000e-03 54.7
31 TraesCS6D01G050300 chr3B 86.859 761 82 11 942 1694 607385537 607384787 0.000000e+00 835.0
32 TraesCS6D01G050300 chr3B 81.757 148 18 2 1812 1950 607384663 607384516 6.710000e-22 115.0
33 TraesCS6D01G050300 chr3B 88.889 54 6 0 2009 2062 596861759 596861812 1.910000e-07 67.6
34 TraesCS6D01G050300 chr3B 100.000 29 0 0 2712 2740 46336039 46336067 1.000000e-03 54.7
35 TraesCS6D01G050300 chr4A 84.728 478 48 17 596 1069 541116239 541115783 3.480000e-124 455.0
36 TraesCS6D01G050300 chr3A 84.519 478 49 17 596 1069 397551720 397551264 1.620000e-122 449.0
37 TraesCS6D01G050300 chr3A 83.453 139 14 2 1812 1941 601556245 601556383 1.440000e-23 121.0
38 TraesCS6D01G050300 chr3A 86.792 53 7 0 2009 2061 596367625 596367677 3.190000e-05 60.2
39 TraesCS6D01G050300 chr3A 100.000 29 0 0 1890 1918 601556134 601556162 1.000000e-03 54.7
40 TraesCS6D01G050300 chr2B 92.308 104 6 2 249 352 693801491 693801592 2.380000e-31 147.0
41 TraesCS6D01G050300 chr2B 92.500 40 3 0 2701 2740 87387203 87387242 1.150000e-04 58.4
42 TraesCS6D01G050300 chr1A 92.079 101 7 1 290 390 353728052 353728151 1.110000e-29 141.0
43 TraesCS6D01G050300 chr1A 91.089 101 8 1 290 390 172686805 172686706 5.150000e-28 135.0
44 TraesCS6D01G050300 chr1A 84.091 132 18 3 290 419 568484847 568484717 1.110000e-24 124.0
45 TraesCS6D01G050300 chr1A 94.737 38 2 0 2703 2740 442390182 442390145 3.190000e-05 60.2
46 TraesCS6D01G050300 chr7A 85.606 132 16 3 290 419 498336941 498336811 5.150000e-28 135.0
47 TraesCS6D01G050300 chr4D 91.489 47 4 0 2009 2055 119751880 119751926 6.850000e-07 65.8
48 TraesCS6D01G050300 chr1B 91.489 47 4 0 2009 2055 370729936 370729982 6.850000e-07 65.8
49 TraesCS6D01G050300 chr1D 89.362 47 5 0 2009 2055 305589090 305589044 3.190000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G050300 chr6D 24260731 24263692 2961 True 5470.000000 5470 100.000000 1 2962 1 chr6D.!!$R1 2961
1 TraesCS6D01G050300 chr6D 24230315 24231992 1677 True 456.000000 1164 86.969667 374 2123 3 chr6D.!!$R2 1749
2 TraesCS6D01G050300 chr6A 22802692 22805677 2985 True 1267.666667 3216 89.626000 51 2750 3 chr6A.!!$R4 2699
3 TraesCS6D01G050300 chr6A 22695457 22696441 984 True 1149.000000 1149 87.598000 971 1992 1 chr6A.!!$R1 1021
4 TraesCS6D01G050300 chr6A 11802154 11802966 812 False 289.500000 444 87.699500 290 1069 2 chr6A.!!$F3 779
5 TraesCS6D01G050300 chr6B 39338103 39341292 3189 True 1033.333333 2704 86.263667 51 2750 3 chr6B.!!$R3 2699
6 TraesCS6D01G050300 chr6B 39198064 39199403 1339 True 614.950000 1166 92.514000 577 1999 2 chr6B.!!$R2 1422
7 TraesCS6D01G050300 chr5A 465110990 465111747 757 False 931.000000 931 88.846000 942 1708 1 chr5A.!!$F1 766
8 TraesCS6D01G050300 chr5B 166167287 166168043 756 True 926.000000 926 88.672000 942 1708 1 chr5B.!!$R2 766
9 TraesCS6D01G050300 chr5B 165775952 165776708 756 True 920.000000 920 88.542000 942 1708 1 chr5B.!!$R1 766
10 TraesCS6D01G050300 chr2A 425812684 425813441 757 True 915.000000 915 88.457000 942 1708 1 chr2A.!!$R1 766
11 TraesCS6D01G050300 chr2A 190870815 190871625 810 True 276.000000 433 83.612000 290 1069 2 chr2A.!!$R3 779
12 TraesCS6D01G050300 chr3D 459468035 459468826 791 True 448.850000 843 93.416000 942 1918 2 chr3D.!!$R1 976
13 TraesCS6D01G050300 chr3B 607384516 607385537 1021 True 475.000000 835 84.308000 942 1950 2 chr3B.!!$R1 1008

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
567 1159 0.032952 ATGCGTACACAGTGGTCGTT 59.967 50.0 16.85 6.5 0.0 3.85 F
574 1166 0.443869 CACAGTGGTCGTTGCTATGC 59.556 55.0 0.00 0.0 0.0 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1773 2820 0.035630 AGCTCACCTGATGCAGTTCC 60.036 55.000 0.00 0.0 0.0 3.62 R
2514 3620 1.133513 TGCCATGGTGTTCTGTTTCCT 60.134 47.619 14.67 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.560896 GAAGTGTCGACATTTTGACGC 58.439 47.619 24.69 10.10 44.28 5.19
28 29 2.968179 GTGTCGACATTTTGACGCG 58.032 52.632 23.12 3.53 38.85 6.01
29 30 0.231279 GTGTCGACATTTTGACGCGT 59.769 50.000 23.12 13.85 38.85 6.01
30 31 0.931702 TGTCGACATTTTGACGCGTT 59.068 45.000 15.76 0.00 38.85 4.84
31 32 1.305482 GTCGACATTTTGACGCGTTG 58.695 50.000 15.53 10.16 35.65 4.10
32 33 0.931702 TCGACATTTTGACGCGTTGT 59.068 45.000 15.53 14.02 35.65 3.32
33 34 1.034293 CGACATTTTGACGCGTTGTG 58.966 50.000 17.46 12.23 0.00 3.33
34 35 0.770008 GACATTTTGACGCGTTGTGC 59.230 50.000 17.46 3.39 41.47 4.57
44 45 1.423845 GCGTTGTGCGTCCAATAGG 59.576 57.895 0.00 0.00 43.66 2.57
45 46 1.017177 GCGTTGTGCGTCCAATAGGA 61.017 55.000 0.00 0.00 43.66 2.94
60 61 3.983044 ATAGGATATTCCACGCCTTCC 57.017 47.619 0.00 0.00 39.61 3.46
233 236 2.124983 CACATCCCACCAGCTCCG 60.125 66.667 0.00 0.00 0.00 4.63
275 282 3.072468 CCACTCGCTTCCCCCGTA 61.072 66.667 0.00 0.00 0.00 4.02
276 283 2.494918 CACTCGCTTCCCCCGTAG 59.505 66.667 0.00 0.00 0.00 3.51
277 284 2.036890 ACTCGCTTCCCCCGTAGT 59.963 61.111 0.00 0.00 0.00 2.73
278 285 2.348888 ACTCGCTTCCCCCGTAGTG 61.349 63.158 0.00 0.00 0.00 2.74
279 286 3.718210 CTCGCTTCCCCCGTAGTGC 62.718 68.421 0.00 0.00 0.00 4.40
286 293 4.578898 CCCCGTAGTGCGCGCATA 62.579 66.667 38.62 25.33 39.71 3.14
360 850 2.045634 GTGCAGAGCATCCAGGCA 60.046 61.111 0.00 0.00 41.91 4.75
367 857 3.869272 GCATCCAGGCAAGACGCG 61.869 66.667 3.53 3.53 43.84 6.01
425 954 3.057547 CTCTGCCTCGTCACCGGAG 62.058 68.421 9.46 0.00 33.95 4.63
449 978 1.142097 GCTCCCCTTGTACTCTCGC 59.858 63.158 0.00 0.00 0.00 5.03
474 1049 1.447838 GCTAGCTGCTGCCGTTGTA 60.448 57.895 13.43 0.00 40.80 2.41
480 1055 1.630148 CTGCTGCCGTTGTACTACTC 58.370 55.000 5.91 0.00 0.00 2.59
485 1060 3.614390 GCTGCCGTTGTACTACTCTTCTT 60.614 47.826 5.91 0.00 0.00 2.52
513 1103 2.355716 GGGTGGTTGTGCTAATGCTAGA 60.356 50.000 0.00 0.00 40.48 2.43
530 1122 3.372514 GCTAGAGGCTGCTGTTCTAAAAC 59.627 47.826 0.00 0.00 38.06 2.43
551 1143 8.672214 AAAACAGTTTTTCAATTGAAACATGC 57.328 26.923 28.78 19.05 43.01 4.06
552 1144 6.035070 ACAGTTTTTCAATTGAAACATGCG 57.965 33.333 28.78 19.10 43.01 4.73
553 1145 5.580297 ACAGTTTTTCAATTGAAACATGCGT 59.420 32.000 28.78 19.63 43.01 5.24
554 1146 6.754209 ACAGTTTTTCAATTGAAACATGCGTA 59.246 30.769 28.78 12.95 43.01 4.42
555 1147 7.056800 CAGTTTTTCAATTGAAACATGCGTAC 58.943 34.615 28.78 17.79 43.01 3.67
556 1148 6.754209 AGTTTTTCAATTGAAACATGCGTACA 59.246 30.769 28.78 11.64 43.01 2.90
557 1149 6.503616 TTTTCAATTGAAACATGCGTACAC 57.496 33.333 28.78 0.00 43.01 2.90
558 1150 4.820284 TCAATTGAAACATGCGTACACA 57.180 36.364 5.45 0.00 0.00 3.72
559 1151 4.782156 TCAATTGAAACATGCGTACACAG 58.218 39.130 5.45 0.00 0.00 3.66
560 1152 4.274705 TCAATTGAAACATGCGTACACAGT 59.725 37.500 5.45 0.00 0.00 3.55
561 1153 3.600717 TTGAAACATGCGTACACAGTG 57.399 42.857 0.00 0.00 0.00 3.66
562 1154 1.870402 TGAAACATGCGTACACAGTGG 59.130 47.619 5.31 0.00 0.00 4.00
563 1155 1.871039 GAAACATGCGTACACAGTGGT 59.129 47.619 5.31 0.00 0.00 4.16
564 1156 1.508632 AACATGCGTACACAGTGGTC 58.491 50.000 5.31 0.00 0.00 4.02
565 1157 0.666274 ACATGCGTACACAGTGGTCG 60.666 55.000 5.31 10.06 0.00 4.79
566 1158 0.666274 CATGCGTACACAGTGGTCGT 60.666 55.000 16.85 0.00 0.00 4.34
567 1159 0.032952 ATGCGTACACAGTGGTCGTT 59.967 50.000 16.85 6.50 0.00 3.85
568 1160 0.872451 TGCGTACACAGTGGTCGTTG 60.872 55.000 16.85 0.00 0.00 4.10
569 1161 1.850640 CGTACACAGTGGTCGTTGC 59.149 57.895 5.31 0.00 0.00 4.17
570 1162 0.596600 CGTACACAGTGGTCGTTGCT 60.597 55.000 5.31 0.00 0.00 3.91
571 1163 1.335233 CGTACACAGTGGTCGTTGCTA 60.335 52.381 5.31 0.00 0.00 3.49
572 1164 2.670229 CGTACACAGTGGTCGTTGCTAT 60.670 50.000 5.31 0.00 0.00 2.97
573 1165 1.795768 ACACAGTGGTCGTTGCTATG 58.204 50.000 5.31 0.00 0.00 2.23
574 1166 0.443869 CACAGTGGTCGTTGCTATGC 59.556 55.000 0.00 0.00 0.00 3.14
575 1167 1.014044 ACAGTGGTCGTTGCTATGCG 61.014 55.000 0.00 0.00 0.00 4.73
672 1275 1.729284 GCATTTCACCTGCCAATTGG 58.271 50.000 20.81 20.81 33.44 3.16
677 1280 1.473258 TCACCTGCCAATTGGTATGC 58.527 50.000 25.19 11.55 37.57 3.14
746 1353 8.368126 CGATGCAACTTTTATCTTTTGATTGAC 58.632 33.333 0.00 0.00 40.19 3.18
773 1644 7.989170 ACACTAGTGCTCATGATTTGATATGAA 59.011 33.333 22.90 0.00 33.30 2.57
774 1645 8.833493 CACTAGTGCTCATGATTTGATATGAAA 58.167 33.333 10.54 0.00 33.30 2.69
775 1646 9.570468 ACTAGTGCTCATGATTTGATATGAAAT 57.430 29.630 0.00 0.00 33.30 2.17
776 1647 9.827411 CTAGTGCTCATGATTTGATATGAAATG 57.173 33.333 4.77 0.00 33.30 2.32
777 1648 8.459911 AGTGCTCATGATTTGATATGAAATGA 57.540 30.769 4.77 0.00 33.30 2.57
778 1649 8.568794 AGTGCTCATGATTTGATATGAAATGAG 58.431 33.333 4.77 8.29 41.46 2.90
779 1650 8.350722 GTGCTCATGATTTGATATGAAATGAGT 58.649 33.333 14.30 0.00 40.91 3.41
780 1651 8.349983 TGCTCATGATTTGATATGAAATGAGTG 58.650 33.333 14.30 7.45 40.91 3.51
781 1652 7.326305 GCTCATGATTTGATATGAAATGAGTGC 59.674 37.037 14.30 8.89 40.91 4.40
782 1653 8.228035 TCATGATTTGATATGAAATGAGTGCA 57.772 30.769 4.77 0.00 30.84 4.57
790 1661 8.735692 TGATATGAAATGAGTGCAATGAGTAA 57.264 30.769 0.00 0.00 0.00 2.24
803 1674 6.862608 GTGCAATGAGTAAATTGAACACATCA 59.137 34.615 3.63 0.00 43.16 3.07
806 1677 7.543172 GCAATGAGTAAATTGAACACATCACAT 59.457 33.333 1.22 0.00 39.46 3.21
849 1736 2.749076 TCAATACAGCAATCTGGCACAC 59.251 45.455 0.00 0.00 44.54 3.82
873 1768 3.123621 GGTGAAGTACAGATGCAAGAACG 59.876 47.826 0.00 0.00 0.00 3.95
891 1786 2.991250 ACGGAAATGCATCTGTAGCTT 58.009 42.857 0.00 0.00 37.16 3.74
896 1791 5.503031 CGGAAATGCATCTGTAGCTTGTTAG 60.503 44.000 0.00 0.00 0.00 2.34
969 1929 0.814010 CCGTGCTTCCTAAATCCCGG 60.814 60.000 0.00 0.00 0.00 5.73
1034 1995 7.047271 TCATCAAAGTATGCATTGTAGCTGTA 58.953 34.615 3.54 0.00 34.99 2.74
1061 2022 5.705905 AGTGCTTGGTTTATGGTTACTTCTC 59.294 40.000 0.00 0.00 0.00 2.87
1075 2036 5.008712 GGTTACTTCTCACTTGGTTCTTTGG 59.991 44.000 0.00 0.00 0.00 3.28
1099 2060 8.296713 TGGTTTTTCTTGCTTATGATGACTTAC 58.703 33.333 0.00 0.00 0.00 2.34
1169 2130 5.343307 AATCCAAGGAATTGGTGCAATAC 57.657 39.130 6.89 0.00 42.62 1.89
1260 2221 3.057033 GCCTGCCATCATTATCAATGGTC 60.057 47.826 3.54 0.00 43.65 4.02
1295 2256 1.328680 CCTGAATTCGCATCTGGTTCG 59.671 52.381 0.04 0.00 32.83 3.95
1567 2530 6.457355 TGGACAAATTCAAACATCAGAATGG 58.543 36.000 0.00 0.00 37.19 3.16
1683 2700 1.562672 CCTACCACTCCCAGGGTTGG 61.563 65.000 21.67 21.67 42.22 3.77
1695 2712 1.527380 GGGTTGGTTCAGGCGTCAA 60.527 57.895 0.00 0.00 0.00 3.18
1773 2820 1.821332 GGCAGGCCTCGAAAGGATG 60.821 63.158 0.00 0.00 46.67 3.51
2028 3113 3.004419 TCCTAGATACATCCGTTTGAGCG 59.996 47.826 0.00 0.00 0.00 5.03
2050 3135 4.377897 GTCAATTAATTCCGGACGGAGAT 58.622 43.478 13.64 9.22 46.06 2.75
2163 3248 7.095439 GCTAGATTCCAGATTTACTATGTGTGC 60.095 40.741 0.00 0.00 0.00 4.57
2170 3255 4.917998 AGATTTACTATGTGTGCGCTATCG 59.082 41.667 9.73 0.00 39.07 2.92
2188 3273 7.056895 GCGCTATCGTATTAATTTCTTTTCGTG 59.943 37.037 0.00 0.00 38.14 4.35
2190 3275 9.144085 GCTATCGTATTAATTTCTTTTCGTGTG 57.856 33.333 0.00 0.00 0.00 3.82
2215 3300 7.011389 TGCATACAAGTATATCTGCAAACTGTC 59.989 37.037 4.31 0.00 0.00 3.51
2223 3308 9.726438 AGTATATCTGCAAACTGTCTAAAAAGT 57.274 29.630 0.00 0.00 0.00 2.66
2235 3320 7.514721 ACTGTCTAAAAAGTTTCTGGTATGGA 58.485 34.615 0.00 0.00 0.00 3.41
2236 3321 7.996644 ACTGTCTAAAAAGTTTCTGGTATGGAA 59.003 33.333 0.00 0.00 0.00 3.53
2239 3324 8.290325 GTCTAAAAAGTTTCTGGTATGGAAGTG 58.710 37.037 0.00 0.00 0.00 3.16
2250 3335 7.609056 TCTGGTATGGAAGTGTTAGAAGTTAC 58.391 38.462 0.00 0.00 0.00 2.50
2252 3337 6.499350 TGGTATGGAAGTGTTAGAAGTTACCT 59.501 38.462 0.00 0.00 0.00 3.08
2255 3340 7.745620 ATGGAAGTGTTAGAAGTTACCTTTG 57.254 36.000 0.00 0.00 0.00 2.77
2256 3341 6.059484 TGGAAGTGTTAGAAGTTACCTTTGG 58.941 40.000 0.00 0.00 0.00 3.28
2258 3343 6.544931 GGAAGTGTTAGAAGTTACCTTTGGTT 59.455 38.462 0.00 0.00 37.09 3.67
2259 3344 6.937436 AGTGTTAGAAGTTACCTTTGGTTG 57.063 37.500 0.00 0.00 37.09 3.77
2260 3345 6.420638 AGTGTTAGAAGTTACCTTTGGTTGT 58.579 36.000 0.00 0.00 37.09 3.32
2262 3347 6.541278 GTGTTAGAAGTTACCTTTGGTTGTCT 59.459 38.462 0.00 0.00 37.09 3.41
2263 3348 7.712205 GTGTTAGAAGTTACCTTTGGTTGTCTA 59.288 37.037 0.00 0.00 37.09 2.59
2308 3414 3.390135 TCCTTGAGCTAGTTGTTTCGTG 58.610 45.455 0.00 0.00 0.00 4.35
2313 3419 2.135933 AGCTAGTTGTTTCGTGAGTGC 58.864 47.619 0.00 0.00 0.00 4.40
2346 3452 9.253832 TCCTCAATGGAAAACACATTAATGTAT 57.746 29.630 20.39 7.22 42.94 2.29
2459 3565 6.323996 TGAGAGAACACTTTTCTCCAGTTAGA 59.676 38.462 9.84 0.00 44.46 2.10
2514 3620 6.147437 ACCCTTCCATATTTACCTGACAAA 57.853 37.500 0.00 0.00 0.00 2.83
2536 3648 2.353011 GGAAACAGAACACCATGGCATG 60.353 50.000 20.56 20.56 0.00 4.06
2568 3680 9.745018 TCTCTATTGTCTGAATGATTCCTTTTT 57.255 29.630 2.26 0.00 0.00 1.94
2583 3695 4.076394 TCCTTTTTCAACCCTTCCATACG 58.924 43.478 0.00 0.00 0.00 3.06
2626 3738 2.818432 TCCTGGTACGAGTTCAGAGAAC 59.182 50.000 4.07 1.77 0.00 3.01
2750 3862 1.547372 AGGATGTGCAGCCAAAATGAC 59.453 47.619 9.26 0.00 39.89 3.06
2751 3863 1.547372 GGATGTGCAGCCAAAATGACT 59.453 47.619 1.11 0.00 36.74 3.41
2752 3864 2.028748 GGATGTGCAGCCAAAATGACTT 60.029 45.455 1.11 0.00 36.74 3.01
2753 3865 2.798976 TGTGCAGCCAAAATGACTTC 57.201 45.000 0.00 0.00 0.00 3.01
2754 3866 2.309613 TGTGCAGCCAAAATGACTTCT 58.690 42.857 0.00 0.00 0.00 2.85
2755 3867 2.294233 TGTGCAGCCAAAATGACTTCTC 59.706 45.455 0.00 0.00 0.00 2.87
2756 3868 2.555757 GTGCAGCCAAAATGACTTCTCT 59.444 45.455 0.00 0.00 0.00 3.10
2757 3869 2.816087 TGCAGCCAAAATGACTTCTCTC 59.184 45.455 0.00 0.00 0.00 3.20
2758 3870 3.080319 GCAGCCAAAATGACTTCTCTCT 58.920 45.455 0.00 0.00 0.00 3.10
2759 3871 3.505293 GCAGCCAAAATGACTTCTCTCTT 59.495 43.478 0.00 0.00 0.00 2.85
2760 3872 4.379290 GCAGCCAAAATGACTTCTCTCTTC 60.379 45.833 0.00 0.00 0.00 2.87
2761 3873 4.758674 CAGCCAAAATGACTTCTCTCTTCA 59.241 41.667 0.00 0.00 0.00 3.02
2762 3874 5.415077 CAGCCAAAATGACTTCTCTCTTCAT 59.585 40.000 0.00 0.00 0.00 2.57
2763 3875 6.596888 CAGCCAAAATGACTTCTCTCTTCATA 59.403 38.462 0.00 0.00 29.64 2.15
2764 3876 7.282675 CAGCCAAAATGACTTCTCTCTTCATAT 59.717 37.037 0.00 0.00 29.64 1.78
2765 3877 7.833183 AGCCAAAATGACTTCTCTCTTCATATT 59.167 33.333 0.00 0.00 29.64 1.28
2766 3878 9.113838 GCCAAAATGACTTCTCTCTTCATATTA 57.886 33.333 0.00 0.00 29.64 0.98
2791 3903 6.915544 AGATGAGTTATGTACATGCTTGTG 57.084 37.500 18.81 0.00 36.53 3.33
2792 3904 6.643388 AGATGAGTTATGTACATGCTTGTGA 58.357 36.000 18.81 2.48 36.53 3.58
2793 3905 6.760298 AGATGAGTTATGTACATGCTTGTGAG 59.240 38.462 18.81 0.00 36.53 3.51
2794 3906 5.793817 TGAGTTATGTACATGCTTGTGAGT 58.206 37.500 18.81 3.68 36.53 3.41
2795 3907 5.639082 TGAGTTATGTACATGCTTGTGAGTG 59.361 40.000 18.81 0.00 36.53 3.51
2796 3908 4.393062 AGTTATGTACATGCTTGTGAGTGC 59.607 41.667 18.81 2.14 36.53 4.40
2797 3909 2.252976 TGTACATGCTTGTGAGTGCA 57.747 45.000 15.08 4.17 43.67 4.57
2798 3910 2.570135 TGTACATGCTTGTGAGTGCAA 58.430 42.857 15.08 0.00 42.74 4.08
2799 3911 3.148412 TGTACATGCTTGTGAGTGCAAT 58.852 40.909 15.08 0.00 42.74 3.56
2800 3912 4.322567 TGTACATGCTTGTGAGTGCAATA 58.677 39.130 15.08 0.00 42.74 1.90
2801 3913 3.837213 ACATGCTTGTGAGTGCAATAC 57.163 42.857 4.14 0.00 42.74 1.89
2802 3914 3.415212 ACATGCTTGTGAGTGCAATACT 58.585 40.909 4.14 0.00 42.74 2.12
2803 3915 3.189910 ACATGCTTGTGAGTGCAATACTG 59.810 43.478 4.14 0.00 42.74 2.74
2804 3916 6.390319 ACATGCTTGTGAGTGCAATACTGC 62.390 45.833 4.14 0.00 42.74 4.40
2815 3927 2.659428 GCAATACTGCCCTCCAATTCT 58.341 47.619 0.00 0.00 43.26 2.40
2816 3928 2.360165 GCAATACTGCCCTCCAATTCTG 59.640 50.000 0.00 0.00 43.26 3.02
2817 3929 2.954318 CAATACTGCCCTCCAATTCTGG 59.046 50.000 0.00 0.00 45.08 3.86
2818 3930 0.918983 TACTGCCCTCCAATTCTGGG 59.081 55.000 0.00 0.00 43.71 4.45
2819 3931 1.142688 ACTGCCCTCCAATTCTGGGT 61.143 55.000 8.27 0.00 43.71 4.51
2820 3932 0.394899 CTGCCCTCCAATTCTGGGTC 60.395 60.000 8.27 3.08 43.71 4.46
2821 3933 1.139498 TGCCCTCCAATTCTGGGTCA 61.139 55.000 8.27 5.05 43.71 4.02
2822 3934 0.259938 GCCCTCCAATTCTGGGTCAT 59.740 55.000 8.27 0.00 43.71 3.06
2823 3935 2.025863 GCCCTCCAATTCTGGGTCATG 61.026 57.143 8.27 0.00 43.71 3.07
2824 3936 1.410648 CCCTCCAATTCTGGGTCATGG 60.411 57.143 0.00 0.00 43.71 3.66
2825 3937 1.396653 CTCCAATTCTGGGTCATGGC 58.603 55.000 0.00 0.00 43.71 4.40
2826 3938 0.703488 TCCAATTCTGGGTCATGGCA 59.297 50.000 0.00 0.00 43.71 4.92
2827 3939 1.288633 TCCAATTCTGGGTCATGGCAT 59.711 47.619 0.00 0.00 43.71 4.40
2828 3940 2.513317 TCCAATTCTGGGTCATGGCATA 59.487 45.455 0.00 0.00 43.71 3.14
2829 3941 3.053019 TCCAATTCTGGGTCATGGCATAA 60.053 43.478 0.00 0.00 43.71 1.90
2830 3942 3.899360 CCAATTCTGGGTCATGGCATAAT 59.101 43.478 0.00 0.00 39.30 1.28
2831 3943 4.345837 CCAATTCTGGGTCATGGCATAATT 59.654 41.667 0.00 0.00 39.30 1.40
2832 3944 5.294356 CAATTCTGGGTCATGGCATAATTG 58.706 41.667 12.58 12.58 0.00 2.32
2833 3945 3.668141 TCTGGGTCATGGCATAATTGT 57.332 42.857 0.00 0.00 0.00 2.71
2834 3946 4.787135 TCTGGGTCATGGCATAATTGTA 57.213 40.909 0.00 0.00 0.00 2.41
2835 3947 4.460263 TCTGGGTCATGGCATAATTGTAC 58.540 43.478 0.00 0.00 0.00 2.90
2836 3948 4.080072 TCTGGGTCATGGCATAATTGTACA 60.080 41.667 0.00 0.00 0.00 2.90
2837 3949 4.604156 TGGGTCATGGCATAATTGTACAA 58.396 39.130 11.41 11.41 0.00 2.41
2838 3950 5.019470 TGGGTCATGGCATAATTGTACAAA 58.981 37.500 13.23 0.00 0.00 2.83
2839 3951 5.660417 TGGGTCATGGCATAATTGTACAAAT 59.340 36.000 13.23 6.92 0.00 2.32
2840 3952 6.836007 TGGGTCATGGCATAATTGTACAAATA 59.164 34.615 13.23 9.25 0.00 1.40
2841 3953 7.343057 TGGGTCATGGCATAATTGTACAAATAA 59.657 33.333 13.23 1.32 0.00 1.40
2842 3954 8.200792 GGGTCATGGCATAATTGTACAAATAAA 58.799 33.333 13.23 0.00 0.00 1.40
2843 3955 9.248291 GGTCATGGCATAATTGTACAAATAAAG 57.752 33.333 13.23 7.18 0.00 1.85
2847 3959 9.985730 ATGGCATAATTGTACAAATAAAGATGG 57.014 29.630 13.23 0.00 0.00 3.51
2848 3960 7.925483 TGGCATAATTGTACAAATAAAGATGGC 59.075 33.333 13.23 15.96 0.00 4.40
2849 3961 7.925483 GGCATAATTGTACAAATAAAGATGGCA 59.075 33.333 18.62 0.00 0.00 4.92
2850 3962 9.311916 GCATAATTGTACAAATAAAGATGGCAA 57.688 29.630 13.23 0.00 0.00 4.52
2853 3965 8.986477 AATTGTACAAATAAAGATGGCAAGAC 57.014 30.769 13.23 0.00 0.00 3.01
2854 3966 7.517614 TTGTACAAATAAAGATGGCAAGACA 57.482 32.000 5.64 0.00 0.00 3.41
2855 3967 7.701539 TGTACAAATAAAGATGGCAAGACAT 57.298 32.000 0.00 0.00 0.00 3.06
2856 3968 8.800370 TGTACAAATAAAGATGGCAAGACATA 57.200 30.769 0.00 0.00 0.00 2.29
2857 3969 9.237187 TGTACAAATAAAGATGGCAAGACATAA 57.763 29.630 0.00 0.00 0.00 1.90
2863 3975 8.978874 ATAAAGATGGCAAGACATAATACACA 57.021 30.769 0.00 0.00 0.00 3.72
2864 3976 6.932356 AAGATGGCAAGACATAATACACAG 57.068 37.500 0.00 0.00 0.00 3.66
2865 3977 5.371526 AGATGGCAAGACATAATACACAGG 58.628 41.667 0.00 0.00 0.00 4.00
2866 3978 4.568072 TGGCAAGACATAATACACAGGT 57.432 40.909 0.00 0.00 0.00 4.00
2867 3979 4.917385 TGGCAAGACATAATACACAGGTT 58.083 39.130 0.00 0.00 0.00 3.50
2868 3980 6.056090 TGGCAAGACATAATACACAGGTTA 57.944 37.500 0.00 0.00 0.00 2.85
2869 3981 5.878116 TGGCAAGACATAATACACAGGTTAC 59.122 40.000 0.00 0.00 0.00 2.50
2870 3982 5.878116 GGCAAGACATAATACACAGGTTACA 59.122 40.000 0.00 0.00 0.00 2.41
2871 3983 6.542370 GGCAAGACATAATACACAGGTTACAT 59.458 38.462 0.00 0.00 0.00 2.29
2872 3984 7.713507 GGCAAGACATAATACACAGGTTACATA 59.286 37.037 0.00 0.00 0.00 2.29
2873 3985 8.765219 GCAAGACATAATACACAGGTTACATAG 58.235 37.037 0.00 0.00 0.00 2.23
2874 3986 8.765219 CAAGACATAATACACAGGTTACATAGC 58.235 37.037 0.00 0.00 0.00 2.97
2875 3987 8.251383 AGACATAATACACAGGTTACATAGCT 57.749 34.615 0.00 0.00 34.10 3.32
2876 3988 8.361139 AGACATAATACACAGGTTACATAGCTC 58.639 37.037 0.00 0.00 30.51 4.09
2877 3989 7.442656 ACATAATACACAGGTTACATAGCTCC 58.557 38.462 0.00 0.00 30.51 4.70
2878 3990 4.957684 ATACACAGGTTACATAGCTCCC 57.042 45.455 0.00 0.00 30.51 4.30
2879 3991 2.546899 ACACAGGTTACATAGCTCCCA 58.453 47.619 0.00 0.00 30.51 4.37
2880 3992 2.236395 ACACAGGTTACATAGCTCCCAC 59.764 50.000 0.00 0.00 30.51 4.61
2881 3993 1.838077 ACAGGTTACATAGCTCCCACC 59.162 52.381 0.00 0.00 30.51 4.61
2882 3994 1.120530 AGGTTACATAGCTCCCACCG 58.879 55.000 0.00 0.00 0.00 4.94
2883 3995 0.106149 GGTTACATAGCTCCCACCGG 59.894 60.000 0.00 0.00 0.00 5.28
2884 3996 0.532196 GTTACATAGCTCCCACCGGC 60.532 60.000 0.00 0.00 0.00 6.13
2885 3997 0.978667 TTACATAGCTCCCACCGGCA 60.979 55.000 0.00 0.00 0.00 5.69
2886 3998 1.682451 TACATAGCTCCCACCGGCAC 61.682 60.000 0.00 0.00 0.00 5.01
2887 3999 2.365635 ATAGCTCCCACCGGCACT 60.366 61.111 0.00 0.00 0.00 4.40
2888 4000 2.735772 ATAGCTCCCACCGGCACTG 61.736 63.158 0.00 0.00 0.00 3.66
2889 4001 3.897681 TAGCTCCCACCGGCACTGA 62.898 63.158 0.00 0.00 0.00 3.41
2890 4002 4.329545 GCTCCCACCGGCACTGAA 62.330 66.667 0.00 0.00 0.00 3.02
2891 4003 2.358737 CTCCCACCGGCACTGAAC 60.359 66.667 0.00 0.00 0.00 3.18
2892 4004 3.164977 TCCCACCGGCACTGAACA 61.165 61.111 0.00 0.00 0.00 3.18
2893 4005 2.669569 CCCACCGGCACTGAACAG 60.670 66.667 0.00 0.00 0.00 3.16
2894 4006 3.357079 CCACCGGCACTGAACAGC 61.357 66.667 0.00 0.00 0.00 4.40
2895 4007 2.591429 CACCGGCACTGAACAGCA 60.591 61.111 0.00 0.00 0.00 4.41
2905 4017 1.484356 CTGAACAGCAGCTTTGTTGC 58.516 50.000 15.98 2.52 38.78 4.17
2906 4018 0.102844 TGAACAGCAGCTTTGTTGCC 59.897 50.000 15.98 5.64 40.57 4.52
2907 4019 0.598419 GAACAGCAGCTTTGTTGCCC 60.598 55.000 15.98 1.46 40.57 5.36
2908 4020 1.329171 AACAGCAGCTTTGTTGCCCA 61.329 50.000 11.53 0.00 40.57 5.36
2909 4021 1.006571 CAGCAGCTTTGTTGCCCAG 60.007 57.895 0.00 0.00 40.57 4.45
2910 4022 1.152694 AGCAGCTTTGTTGCCCAGA 60.153 52.632 2.93 0.00 40.57 3.86
2911 4023 1.177256 AGCAGCTTTGTTGCCCAGAG 61.177 55.000 2.93 0.00 40.57 3.35
2912 4024 1.174712 GCAGCTTTGTTGCCCAGAGA 61.175 55.000 0.00 0.00 33.76 3.10
2913 4025 1.542492 CAGCTTTGTTGCCCAGAGAT 58.458 50.000 0.00 0.00 0.00 2.75
2914 4026 1.891150 CAGCTTTGTTGCCCAGAGATT 59.109 47.619 0.00 0.00 0.00 2.40
2915 4027 2.298163 CAGCTTTGTTGCCCAGAGATTT 59.702 45.455 0.00 0.00 0.00 2.17
2916 4028 2.967887 AGCTTTGTTGCCCAGAGATTTT 59.032 40.909 0.00 0.00 0.00 1.82
2917 4029 3.062042 GCTTTGTTGCCCAGAGATTTTG 58.938 45.455 0.00 0.00 0.00 2.44
2918 4030 3.243839 GCTTTGTTGCCCAGAGATTTTGA 60.244 43.478 0.00 0.00 0.00 2.69
2919 4031 4.562143 GCTTTGTTGCCCAGAGATTTTGAT 60.562 41.667 0.00 0.00 0.00 2.57
2920 4032 5.336690 GCTTTGTTGCCCAGAGATTTTGATA 60.337 40.000 0.00 0.00 0.00 2.15
2921 4033 6.662865 TTTGTTGCCCAGAGATTTTGATAA 57.337 33.333 0.00 0.00 0.00 1.75
2922 4034 5.643379 TGTTGCCCAGAGATTTTGATAAC 57.357 39.130 0.00 0.00 0.00 1.89
2923 4035 4.462483 TGTTGCCCAGAGATTTTGATAACC 59.538 41.667 0.00 0.00 0.00 2.85
2924 4036 3.278574 TGCCCAGAGATTTTGATAACCG 58.721 45.455 0.00 0.00 0.00 4.44
2925 4037 3.054728 TGCCCAGAGATTTTGATAACCGA 60.055 43.478 0.00 0.00 0.00 4.69
2926 4038 4.137543 GCCCAGAGATTTTGATAACCGAT 58.862 43.478 0.00 0.00 0.00 4.18
2927 4039 4.580580 GCCCAGAGATTTTGATAACCGATT 59.419 41.667 0.00 0.00 0.00 3.34
2928 4040 5.278022 GCCCAGAGATTTTGATAACCGATTC 60.278 44.000 0.00 0.00 0.00 2.52
2929 4041 6.058183 CCCAGAGATTTTGATAACCGATTCT 58.942 40.000 0.00 0.00 0.00 2.40
2930 4042 6.017605 CCCAGAGATTTTGATAACCGATTCTG 60.018 42.308 0.00 0.00 0.00 3.02
2931 4043 6.425504 CAGAGATTTTGATAACCGATTCTGC 58.574 40.000 0.00 0.00 0.00 4.26
2932 4044 6.037500 CAGAGATTTTGATAACCGATTCTGCA 59.962 38.462 0.00 0.00 0.00 4.41
2933 4045 6.599244 AGAGATTTTGATAACCGATTCTGCAA 59.401 34.615 0.00 0.00 0.00 4.08
2934 4046 7.121168 AGAGATTTTGATAACCGATTCTGCAAA 59.879 33.333 0.00 0.00 0.00 3.68
2935 4047 7.029563 AGATTTTGATAACCGATTCTGCAAAC 58.970 34.615 0.00 0.00 0.00 2.93
2936 4048 4.695217 TTGATAACCGATTCTGCAAACC 57.305 40.909 0.00 0.00 0.00 3.27
2937 4049 2.675844 TGATAACCGATTCTGCAAACCG 59.324 45.455 0.00 0.00 0.00 4.44
2938 4050 1.444836 TAACCGATTCTGCAAACCGG 58.555 50.000 11.45 11.45 45.09 5.28
2939 4051 1.241315 AACCGATTCTGCAAACCGGG 61.241 55.000 15.79 5.53 43.98 5.73
2940 4052 2.485122 CGATTCTGCAAACCGGGC 59.515 61.111 6.32 0.00 0.00 6.13
2941 4053 2.040544 CGATTCTGCAAACCGGGCT 61.041 57.895 6.32 0.00 0.00 5.19
2942 4054 1.803289 GATTCTGCAAACCGGGCTC 59.197 57.895 6.32 0.00 0.00 4.70
2943 4055 1.657751 GATTCTGCAAACCGGGCTCC 61.658 60.000 6.32 0.00 0.00 4.70
2944 4056 2.142292 ATTCTGCAAACCGGGCTCCT 62.142 55.000 6.32 0.00 0.00 3.69
2945 4057 1.485294 TTCTGCAAACCGGGCTCCTA 61.485 55.000 6.32 0.00 0.00 2.94
2946 4058 1.450312 CTGCAAACCGGGCTCCTAG 60.450 63.158 6.32 0.00 0.00 3.02
2947 4059 1.899437 CTGCAAACCGGGCTCCTAGA 61.899 60.000 6.32 0.00 0.00 2.43
2948 4060 1.153349 GCAAACCGGGCTCCTAGAG 60.153 63.158 6.32 0.00 0.00 2.43
2949 4061 1.522569 CAAACCGGGCTCCTAGAGG 59.477 63.158 6.32 0.00 0.00 3.69
2950 4062 1.080538 AAACCGGGCTCCTAGAGGT 59.919 57.895 6.32 0.00 36.66 3.85
2951 4063 0.337428 AAACCGGGCTCCTAGAGGTA 59.663 55.000 6.32 0.00 34.35 3.08
2952 4064 0.106116 AACCGGGCTCCTAGAGGTAG 60.106 60.000 6.32 0.00 34.35 3.18
2953 4065 0.992431 ACCGGGCTCCTAGAGGTAGA 60.992 60.000 6.32 0.00 36.34 2.59
2954 4066 0.250989 CCGGGCTCCTAGAGGTAGAG 60.251 65.000 0.00 0.00 36.34 2.43
2955 4067 0.475044 CGGGCTCCTAGAGGTAGAGT 59.525 60.000 0.00 0.00 36.34 3.24
2956 4068 1.698532 CGGGCTCCTAGAGGTAGAGTA 59.301 57.143 0.00 0.00 36.34 2.59
2957 4069 2.106166 CGGGCTCCTAGAGGTAGAGTAA 59.894 54.545 0.00 0.00 36.34 2.24
2958 4070 3.434739 CGGGCTCCTAGAGGTAGAGTAAA 60.435 52.174 0.00 0.00 36.34 2.01
2959 4071 4.544683 GGGCTCCTAGAGGTAGAGTAAAA 58.455 47.826 0.00 0.00 36.34 1.52
2960 4072 4.961099 GGGCTCCTAGAGGTAGAGTAAAAA 59.039 45.833 0.00 0.00 36.34 1.94
2961 4073 5.603395 GGGCTCCTAGAGGTAGAGTAAAAAT 59.397 44.000 0.00 0.00 36.34 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.313987 ATGTCGACACTTCGCACAGA 59.686 50.000 22.71 0.00 45.46 3.41
3 4 2.033236 TCAAAATGTCGACACTTCGCAC 60.033 45.455 22.71 0.00 45.46 5.34
4 5 2.033236 GTCAAAATGTCGACACTTCGCA 60.033 45.455 22.71 0.49 45.46 5.10
5 6 2.560896 GTCAAAATGTCGACACTTCGC 58.439 47.619 22.71 6.41 45.46 4.70
7 8 2.560896 GCGTCAAAATGTCGACACTTC 58.439 47.619 22.71 3.48 30.84 3.01
8 9 1.070843 CGCGTCAAAATGTCGACACTT 60.071 47.619 22.71 14.53 30.84 3.16
9 10 0.506932 CGCGTCAAAATGTCGACACT 59.493 50.000 22.71 7.18 30.84 3.55
10 11 0.231279 ACGCGTCAAAATGTCGACAC 59.769 50.000 22.71 5.92 30.84 3.67
11 12 0.931702 AACGCGTCAAAATGTCGACA 59.068 45.000 22.48 22.48 30.84 4.35
12 13 1.305482 CAACGCGTCAAAATGTCGAC 58.695 50.000 14.44 9.11 30.84 4.20
13 14 0.931702 ACAACGCGTCAAAATGTCGA 59.068 45.000 14.44 0.00 30.84 4.20
14 15 1.034293 CACAACGCGTCAAAATGTCG 58.966 50.000 14.44 4.27 32.37 4.35
15 16 0.770008 GCACAACGCGTCAAAATGTC 59.230 50.000 14.44 3.62 0.00 3.06
16 17 2.866688 GCACAACGCGTCAAAATGT 58.133 47.368 14.44 10.45 0.00 2.71
27 28 1.651987 ATCCTATTGGACGCACAACG 58.348 50.000 0.00 0.00 46.51 4.10
28 29 4.213482 GGAATATCCTATTGGACGCACAAC 59.787 45.833 0.00 0.00 46.51 3.32
29 30 4.141597 TGGAATATCCTATTGGACGCACAA 60.142 41.667 0.00 0.00 46.51 3.33
30 31 3.389656 TGGAATATCCTATTGGACGCACA 59.610 43.478 0.00 0.00 46.51 4.57
31 32 3.746492 GTGGAATATCCTATTGGACGCAC 59.254 47.826 0.00 0.00 46.51 5.34
32 33 3.554129 CGTGGAATATCCTATTGGACGCA 60.554 47.826 0.00 0.00 46.51 5.24
33 34 2.993899 CGTGGAATATCCTATTGGACGC 59.006 50.000 0.00 0.00 46.51 5.19
34 35 2.993899 GCGTGGAATATCCTATTGGACG 59.006 50.000 0.00 0.00 46.51 4.79
35 36 3.008049 AGGCGTGGAATATCCTATTGGAC 59.992 47.826 0.00 0.00 46.51 4.02
37 38 3.703001 AGGCGTGGAATATCCTATTGG 57.297 47.619 0.00 0.00 37.46 3.16
38 39 4.003648 GGAAGGCGTGGAATATCCTATTG 58.996 47.826 0.00 0.00 37.46 1.90
39 40 3.306780 CGGAAGGCGTGGAATATCCTATT 60.307 47.826 0.00 0.00 37.46 1.73
40 41 2.233922 CGGAAGGCGTGGAATATCCTAT 59.766 50.000 0.00 0.00 37.46 2.57
41 42 1.616865 CGGAAGGCGTGGAATATCCTA 59.383 52.381 0.00 0.00 37.46 2.94
42 43 0.393077 CGGAAGGCGTGGAATATCCT 59.607 55.000 0.00 0.00 37.46 3.24
43 44 2.914379 CGGAAGGCGTGGAATATCC 58.086 57.895 0.00 0.00 36.96 2.59
108 109 2.982339 TTAAAAGGGCCTGCCACTAA 57.018 45.000 6.92 0.00 37.98 2.24
110 111 1.632589 CTTTAAAAGGGCCTGCCACT 58.367 50.000 6.92 1.94 37.98 4.00
258 265 3.072468 TACGGGGGAAGCGAGTGG 61.072 66.667 0.00 0.00 0.00 4.00
260 267 2.036890 ACTACGGGGGAAGCGAGT 59.963 61.111 0.00 0.00 0.00 4.18
273 280 1.487231 CGGAATATGCGCGCACTAC 59.513 57.895 39.05 25.65 0.00 2.73
274 281 3.930838 CGGAATATGCGCGCACTA 58.069 55.556 39.05 27.54 0.00 2.74
281 288 1.157870 AACTTCCGGCGGAATATGCG 61.158 55.000 38.43 28.23 41.23 4.73
282 289 0.307760 CAACTTCCGGCGGAATATGC 59.692 55.000 38.43 0.00 41.23 3.14
284 291 1.805120 CGACAACTTCCGGCGGAATAT 60.805 52.381 38.43 27.22 41.23 1.28
285 292 0.458889 CGACAACTTCCGGCGGAATA 60.459 55.000 38.43 20.67 41.23 1.75
286 293 1.740296 CGACAACTTCCGGCGGAAT 60.740 57.895 38.43 25.59 41.23 3.01
367 857 2.291043 TTGAAGAGGGAGGGCGTCC 61.291 63.158 17.79 17.79 46.10 4.79
399 928 3.073735 CGAGGCAGAGGCAGGTCT 61.074 66.667 0.00 0.00 43.71 3.85
436 965 2.152699 CACGCGCGAGAGTACAAGG 61.153 63.158 39.36 2.23 44.22 3.61
440 969 2.573341 TAGCACACGCGCGAGAGTAC 62.573 60.000 39.36 24.08 44.22 2.73
474 1049 4.263506 CCACCCATCCAAAAGAAGAGTAGT 60.264 45.833 0.00 0.00 0.00 2.73
480 1055 2.965147 ACAACCACCCATCCAAAAGAAG 59.035 45.455 0.00 0.00 0.00 2.85
485 1060 0.105760 AGCACAACCACCCATCCAAA 60.106 50.000 0.00 0.00 0.00 3.28
530 1122 6.035070 ACGCATGTTTCAATTGAAAAACTG 57.965 33.333 30.07 25.43 44.58 3.16
532 1124 6.838806 GTGTACGCATGTTTCAATTGAAAAAC 59.161 34.615 30.07 21.56 44.58 2.43
535 1127 5.582550 TGTGTACGCATGTTTCAATTGAAA 58.417 33.333 26.01 26.01 41.29 2.69
537 1129 4.274705 ACTGTGTACGCATGTTTCAATTGA 59.725 37.500 10.02 3.38 0.00 2.57
538 1130 4.379498 CACTGTGTACGCATGTTTCAATTG 59.621 41.667 10.02 0.00 0.00 2.32
539 1131 4.536065 CACTGTGTACGCATGTTTCAATT 58.464 39.130 10.02 0.00 0.00 2.32
540 1132 3.058293 CCACTGTGTACGCATGTTTCAAT 60.058 43.478 10.02 0.00 0.00 2.57
541 1133 2.289274 CCACTGTGTACGCATGTTTCAA 59.711 45.455 10.02 0.00 0.00 2.69
542 1134 1.870402 CCACTGTGTACGCATGTTTCA 59.130 47.619 10.02 0.00 0.00 2.69
543 1135 1.871039 ACCACTGTGTACGCATGTTTC 59.129 47.619 10.02 0.00 0.00 2.78
544 1136 1.871039 GACCACTGTGTACGCATGTTT 59.129 47.619 10.02 0.53 0.00 2.83
545 1137 1.508632 GACCACTGTGTACGCATGTT 58.491 50.000 10.02 0.00 0.00 2.71
546 1138 0.666274 CGACCACTGTGTACGCATGT 60.666 55.000 10.02 7.75 0.00 3.21
547 1139 0.666274 ACGACCACTGTGTACGCATG 60.666 55.000 10.02 10.13 0.00 4.06
548 1140 0.032952 AACGACCACTGTGTACGCAT 59.967 50.000 10.02 0.00 0.00 4.73
549 1141 0.872451 CAACGACCACTGTGTACGCA 60.872 55.000 18.45 9.13 0.00 5.24
550 1142 1.850640 CAACGACCACTGTGTACGC 59.149 57.895 18.45 0.00 0.00 4.42
551 1143 0.596600 AGCAACGACCACTGTGTACG 60.597 55.000 17.45 17.45 0.00 3.67
552 1144 2.427232 TAGCAACGACCACTGTGTAC 57.573 50.000 7.08 0.00 0.00 2.90
553 1145 2.929161 GCATAGCAACGACCACTGTGTA 60.929 50.000 7.08 0.00 0.00 2.90
554 1146 1.795768 CATAGCAACGACCACTGTGT 58.204 50.000 7.08 0.00 0.00 3.72
555 1147 0.443869 GCATAGCAACGACCACTGTG 59.556 55.000 0.00 0.00 0.00 3.66
556 1148 1.014044 CGCATAGCAACGACCACTGT 61.014 55.000 0.00 0.00 0.00 3.55
557 1149 0.735978 TCGCATAGCAACGACCACTG 60.736 55.000 0.00 0.00 32.45 3.66
558 1150 0.037697 TTCGCATAGCAACGACCACT 60.038 50.000 0.00 0.00 38.17 4.00
559 1151 1.006832 ATTCGCATAGCAACGACCAC 58.993 50.000 0.00 0.00 38.17 4.16
560 1152 1.732941 AATTCGCATAGCAACGACCA 58.267 45.000 0.00 0.00 38.17 4.02
561 1153 2.825086 AAATTCGCATAGCAACGACC 57.175 45.000 0.00 0.00 38.17 4.79
562 1154 4.155449 TGAAAAATTCGCATAGCAACGAC 58.845 39.130 0.00 0.00 38.17 4.34
563 1155 4.411993 TGAAAAATTCGCATAGCAACGA 57.588 36.364 0.00 0.00 36.32 3.85
564 1156 5.685195 ATTGAAAAATTCGCATAGCAACG 57.315 34.783 0.00 0.00 0.00 4.10
565 1157 7.048000 TCAATTGAAAAATTCGCATAGCAAC 57.952 32.000 5.45 0.00 0.00 4.17
566 1158 7.621841 GCTTCAATTGAAAAATTCGCATAGCAA 60.622 33.333 20.82 0.00 33.07 3.91
567 1159 6.183360 GCTTCAATTGAAAAATTCGCATAGCA 60.183 34.615 20.82 0.00 33.07 3.49
568 1160 6.180567 GCTTCAATTGAAAAATTCGCATAGC 58.819 36.000 20.82 12.41 33.07 2.97
569 1161 7.280730 TGCTTCAATTGAAAAATTCGCATAG 57.719 32.000 20.82 6.66 33.07 2.23
570 1162 7.331440 ACATGCTTCAATTGAAAAATTCGCATA 59.669 29.630 28.42 13.31 31.85 3.14
571 1163 6.148150 ACATGCTTCAATTGAAAAATTCGCAT 59.852 30.769 25.69 25.69 32.55 4.73
572 1164 5.466058 ACATGCTTCAATTGAAAAATTCGCA 59.534 32.000 24.14 24.14 33.07 5.10
573 1165 5.786574 CACATGCTTCAATTGAAAAATTCGC 59.213 36.000 20.82 18.50 33.07 4.70
574 1166 6.879962 ACACATGCTTCAATTGAAAAATTCG 58.120 32.000 20.82 9.90 33.07 3.34
575 1167 8.763356 TGTACACATGCTTCAATTGAAAAATTC 58.237 29.630 20.82 9.02 33.07 2.17
623 1226 4.233123 CACACATGCTTCAGTTGACAAT 57.767 40.909 0.00 0.00 0.00 2.71
672 1275 1.922570 CACACTACCTCCACGCATAC 58.077 55.000 0.00 0.00 0.00 2.39
677 1280 1.078709 CAATGCACACTACCTCCACG 58.921 55.000 0.00 0.00 0.00 4.94
746 1353 7.440255 TCATATCAAATCATGAGCACTAGTGTG 59.560 37.037 23.44 13.90 42.53 3.82
755 1362 7.326305 GCACTCATTTCATATCAAATCATGAGC 59.674 37.037 0.09 0.00 42.53 4.26
773 1644 7.596248 GTGTTCAATTTACTCATTGCACTCATT 59.404 33.333 0.00 0.00 33.10 2.57
774 1645 7.086376 GTGTTCAATTTACTCATTGCACTCAT 58.914 34.615 0.00 0.00 33.10 2.90
775 1646 6.039159 TGTGTTCAATTTACTCATTGCACTCA 59.961 34.615 0.00 0.00 33.97 3.41
776 1647 6.437928 TGTGTTCAATTTACTCATTGCACTC 58.562 36.000 0.00 0.00 33.10 3.51
777 1648 6.389830 TGTGTTCAATTTACTCATTGCACT 57.610 33.333 0.00 0.00 33.10 4.40
778 1649 6.862608 TGATGTGTTCAATTTACTCATTGCAC 59.137 34.615 0.00 0.00 34.58 4.57
779 1650 6.862608 GTGATGTGTTCAATTTACTCATTGCA 59.137 34.615 6.51 0.00 35.70 4.08
780 1651 6.862608 TGTGATGTGTTCAATTTACTCATTGC 59.137 34.615 6.51 0.00 35.70 3.56
781 1652 8.856247 CATGTGATGTGTTCAATTTACTCATTG 58.144 33.333 6.51 0.00 35.70 2.82
782 1653 8.795513 TCATGTGATGTGTTCAATTTACTCATT 58.204 29.630 0.00 0.00 35.70 2.57
849 1736 3.930336 TCTTGCATCTGTACTTCACCTG 58.070 45.455 0.00 0.00 0.00 4.00
873 1768 4.708726 AACAAGCTACAGATGCATTTCC 57.291 40.909 0.00 0.00 0.00 3.13
896 1791 7.385778 TGCATTTAGTAAACACTTGGGATAC 57.614 36.000 0.00 0.00 0.00 2.24
1034 1995 6.724893 AGTAACCATAAACCAAGCACTTTT 57.275 33.333 0.00 0.00 0.00 2.27
1061 2022 5.163864 GCAAGAAAAACCAAAGAACCAAGTG 60.164 40.000 0.00 0.00 0.00 3.16
1075 2036 9.899226 AAGTAAGTCATCATAAGCAAGAAAAAC 57.101 29.630 0.00 0.00 0.00 2.43
1112 2073 3.291584 CCTGGGGGAGAAAGAAAATAGC 58.708 50.000 0.00 0.00 33.58 2.97
1260 2221 0.906756 TCAGGAGGCAAGTCTGGGAG 60.907 60.000 0.00 0.00 0.00 4.30
1295 2256 6.205344 GGAGCATCTCTTACTGCAAGTTGC 62.205 50.000 21.17 21.17 39.26 4.17
1567 2530 4.995487 CCTTAGTTCTGTAGTTGGGAACAC 59.005 45.833 0.00 0.00 42.67 3.32
1683 2700 0.166814 GCTGATGTTGACGCCTGAAC 59.833 55.000 0.00 0.00 0.00 3.18
1695 2712 3.083122 AGCATTTTCTCCTGCTGATGT 57.917 42.857 0.00 0.00 46.55 3.06
1773 2820 0.035630 AGCTCACCTGATGCAGTTCC 60.036 55.000 0.00 0.00 0.00 3.62
2028 3113 3.788937 TCTCCGTCCGGAATTAATTGAC 58.211 45.455 5.23 6.28 44.66 3.18
2083 3168 2.672961 AGCTAGTGTCGCAAGCATAA 57.327 45.000 0.00 0.00 38.75 1.90
2127 3212 7.856145 AATCTGGAATCTAGCTTTACAAGTG 57.144 36.000 0.00 0.00 0.00 3.16
2163 3248 8.054236 ACACGAAAAGAAATTAATACGATAGCG 58.946 33.333 0.00 0.00 44.79 4.26
2170 3255 9.549509 TGTATGCACACGAAAAGAAATTAATAC 57.450 29.630 0.00 0.00 0.00 1.89
2188 3273 7.128331 CAGTTTGCAGATATACTTGTATGCAC 58.872 38.462 6.36 0.00 42.82 4.57
2190 3275 7.225538 AGACAGTTTGCAGATATACTTGTATGC 59.774 37.037 3.75 1.23 0.00 3.14
2215 3300 8.166422 ACACTTCCATACCAGAAACTTTTTAG 57.834 34.615 0.00 0.00 0.00 1.85
2222 3307 6.935208 ACTTCTAACACTTCCATACCAGAAAC 59.065 38.462 0.00 0.00 0.00 2.78
2223 3308 7.074653 ACTTCTAACACTTCCATACCAGAAA 57.925 36.000 0.00 0.00 0.00 2.52
2250 3335 4.326826 TCATTCAGCTAGACAACCAAAGG 58.673 43.478 0.00 0.00 0.00 3.11
2252 3337 6.899393 AATTCATTCAGCTAGACAACCAAA 57.101 33.333 0.00 0.00 0.00 3.28
2255 3340 9.294030 CAAAATAATTCATTCAGCTAGACAACC 57.706 33.333 0.00 0.00 0.00 3.77
2263 3348 9.813446 GGATCTTTCAAAATAATTCATTCAGCT 57.187 29.630 0.00 0.00 0.00 4.24
2308 3414 2.485124 CCATTGAGGATCTCCAGCACTC 60.485 54.545 0.00 0.00 41.22 3.51
2346 3452 2.869801 GCGCAGTGCAATGGTTAGTATA 59.130 45.455 16.93 0.00 45.45 1.47
2369 3475 8.964476 AACATCTTGTCTTGACCGATTTATAT 57.036 30.769 0.00 0.00 0.00 0.86
2459 3565 7.609146 TGTAGATTCAGAGACATTTTGCAAGAT 59.391 33.333 0.00 0.00 0.00 2.40
2514 3620 1.133513 TGCCATGGTGTTCTGTTTCCT 60.134 47.619 14.67 0.00 0.00 3.36
2536 3648 6.974932 TCATTCAGACAATAGAGAAACTGC 57.025 37.500 0.00 0.00 0.00 4.40
2568 3680 2.498481 CAGGTACGTATGGAAGGGTTGA 59.502 50.000 0.00 0.00 0.00 3.18
2583 3695 3.805207 ACAGTGTTTTCCTGTCAGGTAC 58.195 45.455 18.65 14.65 38.81 3.34
2765 3877 9.696917 CACAAGCATGTACATAACTCATCTATA 57.303 33.333 8.32 0.00 37.82 1.31
2766 3878 8.424133 TCACAAGCATGTACATAACTCATCTAT 58.576 33.333 8.32 0.00 37.82 1.98
2767 3879 7.781056 TCACAAGCATGTACATAACTCATCTA 58.219 34.615 8.32 0.00 37.82 1.98
2768 3880 6.643388 TCACAAGCATGTACATAACTCATCT 58.357 36.000 8.32 0.00 37.82 2.90
2769 3881 6.536582 ACTCACAAGCATGTACATAACTCATC 59.463 38.462 8.32 0.00 37.82 2.92
2770 3882 6.314648 CACTCACAAGCATGTACATAACTCAT 59.685 38.462 8.32 0.00 37.82 2.90
2771 3883 5.639082 CACTCACAAGCATGTACATAACTCA 59.361 40.000 8.32 0.00 37.82 3.41
2772 3884 5.446473 GCACTCACAAGCATGTACATAACTC 60.446 44.000 8.32 0.00 37.82 3.01
2773 3885 4.393062 GCACTCACAAGCATGTACATAACT 59.607 41.667 8.32 6.39 37.82 2.24
2774 3886 4.154015 TGCACTCACAAGCATGTACATAAC 59.846 41.667 8.32 3.95 37.82 1.89
2775 3887 4.322567 TGCACTCACAAGCATGTACATAA 58.677 39.130 8.32 0.00 37.82 1.90
2776 3888 3.936564 TGCACTCACAAGCATGTACATA 58.063 40.909 8.32 0.00 37.82 2.29
2777 3889 2.781923 TGCACTCACAAGCATGTACAT 58.218 42.857 1.41 1.41 37.82 2.29
2778 3890 2.252976 TGCACTCACAAGCATGTACA 57.747 45.000 0.00 0.00 37.82 2.90
2779 3891 3.837213 ATTGCACTCACAAGCATGTAC 57.163 42.857 0.00 0.00 40.94 2.90
2780 3892 4.392754 CAGTATTGCACTCACAAGCATGTA 59.607 41.667 0.00 0.00 40.94 2.29
2781 3893 3.189910 CAGTATTGCACTCACAAGCATGT 59.810 43.478 0.00 0.00 40.94 3.21
2782 3894 3.754955 CAGTATTGCACTCACAAGCATG 58.245 45.455 0.00 0.00 40.94 4.06
2808 3920 1.784358 ATGCCATGACCCAGAATTGG 58.216 50.000 0.00 0.00 44.60 3.16
2809 3921 5.294356 CAATTATGCCATGACCCAGAATTG 58.706 41.667 17.93 17.93 41.35 2.32
2810 3922 4.964262 ACAATTATGCCATGACCCAGAATT 59.036 37.500 0.00 1.33 34.33 2.17
2811 3923 4.549668 ACAATTATGCCATGACCCAGAAT 58.450 39.130 0.00 0.00 0.00 2.40
2812 3924 3.979911 ACAATTATGCCATGACCCAGAA 58.020 40.909 0.00 0.00 0.00 3.02
2813 3925 3.668141 ACAATTATGCCATGACCCAGA 57.332 42.857 0.00 0.00 0.00 3.86
2814 3926 4.206375 TGTACAATTATGCCATGACCCAG 58.794 43.478 0.00 0.00 0.00 4.45
2815 3927 4.242336 TGTACAATTATGCCATGACCCA 57.758 40.909 0.00 0.00 0.00 4.51
2816 3928 5.590530 TTTGTACAATTATGCCATGACCC 57.409 39.130 9.56 0.00 0.00 4.46
2817 3929 9.248291 CTTTATTTGTACAATTATGCCATGACC 57.752 33.333 9.56 0.00 0.00 4.02
2821 3933 9.985730 CCATCTTTATTTGTACAATTATGCCAT 57.014 29.630 9.56 0.50 0.00 4.40
2822 3934 7.925483 GCCATCTTTATTTGTACAATTATGCCA 59.075 33.333 9.56 0.00 0.00 4.92
2823 3935 7.925483 TGCCATCTTTATTTGTACAATTATGCC 59.075 33.333 9.56 0.00 0.00 4.40
2824 3936 8.870160 TGCCATCTTTATTTGTACAATTATGC 57.130 30.769 9.56 7.21 0.00 3.14
2828 3940 8.584157 TGTCTTGCCATCTTTATTTGTACAATT 58.416 29.630 9.56 8.67 0.00 2.32
2829 3941 8.121305 TGTCTTGCCATCTTTATTTGTACAAT 57.879 30.769 9.56 2.67 0.00 2.71
2830 3942 7.517614 TGTCTTGCCATCTTTATTTGTACAA 57.482 32.000 3.59 3.59 0.00 2.41
2831 3943 7.701539 ATGTCTTGCCATCTTTATTTGTACA 57.298 32.000 0.00 0.00 0.00 2.90
2837 3949 9.407380 TGTGTATTATGTCTTGCCATCTTTATT 57.593 29.630 0.00 0.00 0.00 1.40
2838 3950 8.978874 TGTGTATTATGTCTTGCCATCTTTAT 57.021 30.769 0.00 0.00 0.00 1.40
2839 3951 7.498900 CCTGTGTATTATGTCTTGCCATCTTTA 59.501 37.037 0.00 0.00 0.00 1.85
2840 3952 6.319658 CCTGTGTATTATGTCTTGCCATCTTT 59.680 38.462 0.00 0.00 0.00 2.52
2841 3953 5.824624 CCTGTGTATTATGTCTTGCCATCTT 59.175 40.000 0.00 0.00 0.00 2.40
2842 3954 5.104360 ACCTGTGTATTATGTCTTGCCATCT 60.104 40.000 0.00 0.00 0.00 2.90
2843 3955 5.126067 ACCTGTGTATTATGTCTTGCCATC 58.874 41.667 0.00 0.00 0.00 3.51
2844 3956 5.116084 ACCTGTGTATTATGTCTTGCCAT 57.884 39.130 0.00 0.00 0.00 4.40
2845 3957 4.568072 ACCTGTGTATTATGTCTTGCCA 57.432 40.909 0.00 0.00 0.00 4.92
2846 3958 5.878116 TGTAACCTGTGTATTATGTCTTGCC 59.122 40.000 0.00 0.00 0.00 4.52
2847 3959 6.978343 TGTAACCTGTGTATTATGTCTTGC 57.022 37.500 0.00 0.00 0.00 4.01
2848 3960 8.765219 GCTATGTAACCTGTGTATTATGTCTTG 58.235 37.037 0.00 0.00 0.00 3.02
2849 3961 8.705594 AGCTATGTAACCTGTGTATTATGTCTT 58.294 33.333 0.00 0.00 0.00 3.01
2850 3962 8.251383 AGCTATGTAACCTGTGTATTATGTCT 57.749 34.615 0.00 0.00 0.00 3.41
2851 3963 7.599245 GGAGCTATGTAACCTGTGTATTATGTC 59.401 40.741 0.00 0.00 0.00 3.06
2852 3964 7.442656 GGAGCTATGTAACCTGTGTATTATGT 58.557 38.462 0.00 0.00 0.00 2.29
2853 3965 6.874134 GGGAGCTATGTAACCTGTGTATTATG 59.126 42.308 0.00 0.00 0.00 1.90
2854 3966 6.557253 TGGGAGCTATGTAACCTGTGTATTAT 59.443 38.462 0.00 0.00 0.00 1.28
2855 3967 5.900699 TGGGAGCTATGTAACCTGTGTATTA 59.099 40.000 0.00 0.00 0.00 0.98
2856 3968 4.719773 TGGGAGCTATGTAACCTGTGTATT 59.280 41.667 0.00 0.00 0.00 1.89
2857 3969 4.101119 GTGGGAGCTATGTAACCTGTGTAT 59.899 45.833 0.00 0.00 0.00 2.29
2858 3970 3.449737 GTGGGAGCTATGTAACCTGTGTA 59.550 47.826 0.00 0.00 0.00 2.90
2859 3971 2.236395 GTGGGAGCTATGTAACCTGTGT 59.764 50.000 0.00 0.00 0.00 3.72
2860 3972 2.420129 GGTGGGAGCTATGTAACCTGTG 60.420 54.545 0.00 0.00 0.00 3.66
2861 3973 1.838077 GGTGGGAGCTATGTAACCTGT 59.162 52.381 0.00 0.00 0.00 4.00
2862 3974 1.202533 CGGTGGGAGCTATGTAACCTG 60.203 57.143 0.00 0.00 0.00 4.00
2863 3975 1.120530 CGGTGGGAGCTATGTAACCT 58.879 55.000 0.00 0.00 0.00 3.50
2864 3976 0.106149 CCGGTGGGAGCTATGTAACC 59.894 60.000 0.00 0.00 34.06 2.85
2865 3977 0.532196 GCCGGTGGGAGCTATGTAAC 60.532 60.000 1.90 0.00 34.06 2.50
2866 3978 0.978667 TGCCGGTGGGAGCTATGTAA 60.979 55.000 1.90 0.00 34.06 2.41
2867 3979 1.382009 TGCCGGTGGGAGCTATGTA 60.382 57.895 1.90 0.00 34.06 2.29
2868 3980 2.687200 TGCCGGTGGGAGCTATGT 60.687 61.111 1.90 0.00 34.06 2.29
2869 3981 2.203070 GTGCCGGTGGGAGCTATG 60.203 66.667 1.90 0.00 34.06 2.23
2870 3982 2.365635 AGTGCCGGTGGGAGCTAT 60.366 61.111 1.90 0.00 34.06 2.97
2871 3983 3.390521 CAGTGCCGGTGGGAGCTA 61.391 66.667 1.90 0.00 34.06 3.32
2873 3985 4.329545 TTCAGTGCCGGTGGGAGC 62.330 66.667 1.90 0.00 34.06 4.70
2874 3986 2.358737 GTTCAGTGCCGGTGGGAG 60.359 66.667 1.90 0.00 34.06 4.30
2875 3987 3.164977 TGTTCAGTGCCGGTGGGA 61.165 61.111 1.90 0.00 34.06 4.37
2876 3988 2.669569 CTGTTCAGTGCCGGTGGG 60.670 66.667 1.90 0.00 0.00 4.61
2877 3989 3.357079 GCTGTTCAGTGCCGGTGG 61.357 66.667 1.90 0.00 0.00 4.61
2878 3990 2.591429 TGCTGTTCAGTGCCGGTG 60.591 61.111 1.90 0.00 0.00 4.94
2879 3991 2.281070 CTGCTGTTCAGTGCCGGT 60.281 61.111 1.90 0.00 38.02 5.28
2880 3992 3.730761 GCTGCTGTTCAGTGCCGG 61.731 66.667 0.00 0.00 44.66 6.13
2881 3993 1.789078 AAAGCTGCTGTTCAGTGCCG 61.789 55.000 1.35 0.00 44.66 5.69
2882 3994 0.318445 CAAAGCTGCTGTTCAGTGCC 60.318 55.000 1.35 0.00 44.66 5.01
2883 3995 0.383231 ACAAAGCTGCTGTTCAGTGC 59.617 50.000 1.35 10.17 44.66 4.40
2884 3996 2.456989 CAACAAAGCTGCTGTTCAGTG 58.543 47.619 1.35 0.00 44.66 3.66
2885 3997 1.202336 GCAACAAAGCTGCTGTTCAGT 60.202 47.619 1.35 0.00 44.66 3.41
2886 3998 1.484356 GCAACAAAGCTGCTGTTCAG 58.516 50.000 1.35 3.96 45.62 3.02
2887 3999 0.102844 GGCAACAAAGCTGCTGTTCA 59.897 50.000 1.35 0.00 39.82 3.18
2888 4000 0.598419 GGGCAACAAAGCTGCTGTTC 60.598 55.000 1.35 7.00 39.82 3.18
2889 4001 1.329171 TGGGCAACAAAGCTGCTGTT 61.329 50.000 1.35 8.32 39.82 3.16
2890 4002 1.741327 CTGGGCAACAAAGCTGCTGT 61.741 55.000 1.35 0.00 39.82 4.40
2891 4003 1.006571 CTGGGCAACAAAGCTGCTG 60.007 57.895 1.35 0.00 39.82 4.41
2892 4004 1.152694 TCTGGGCAACAAAGCTGCT 60.153 52.632 0.00 0.00 39.82 4.24
2893 4005 1.174712 TCTCTGGGCAACAAAGCTGC 61.175 55.000 0.00 0.00 39.16 5.25
2894 4006 1.542492 ATCTCTGGGCAACAAAGCTG 58.458 50.000 0.00 0.00 39.74 4.24
2895 4007 2.299326 AATCTCTGGGCAACAAAGCT 57.701 45.000 0.00 0.00 39.74 3.74
2896 4008 3.062042 CAAAATCTCTGGGCAACAAAGC 58.938 45.455 0.00 0.00 39.74 3.51
2897 4009 4.589216 TCAAAATCTCTGGGCAACAAAG 57.411 40.909 0.00 0.00 39.74 2.77
2898 4010 6.454795 GTTATCAAAATCTCTGGGCAACAAA 58.545 36.000 0.00 0.00 39.74 2.83
2899 4011 5.047377 GGTTATCAAAATCTCTGGGCAACAA 60.047 40.000 0.00 0.00 39.74 2.83
2900 4012 4.462483 GGTTATCAAAATCTCTGGGCAACA 59.538 41.667 0.00 0.00 39.74 3.33
2901 4013 4.438744 CGGTTATCAAAATCTCTGGGCAAC 60.439 45.833 0.00 0.00 0.00 4.17
2902 4014 3.694072 CGGTTATCAAAATCTCTGGGCAA 59.306 43.478 0.00 0.00 0.00 4.52
2903 4015 3.054728 TCGGTTATCAAAATCTCTGGGCA 60.055 43.478 0.00 0.00 0.00 5.36
2904 4016 3.541632 TCGGTTATCAAAATCTCTGGGC 58.458 45.455 0.00 0.00 0.00 5.36
2905 4017 6.017605 CAGAATCGGTTATCAAAATCTCTGGG 60.018 42.308 0.00 0.00 0.00 4.45
2906 4018 6.512415 GCAGAATCGGTTATCAAAATCTCTGG 60.512 42.308 0.00 0.00 0.00 3.86
2907 4019 6.037500 TGCAGAATCGGTTATCAAAATCTCTG 59.962 38.462 0.00 0.00 0.00 3.35
2908 4020 6.115446 TGCAGAATCGGTTATCAAAATCTCT 58.885 36.000 0.00 0.00 0.00 3.10
2909 4021 6.363577 TGCAGAATCGGTTATCAAAATCTC 57.636 37.500 0.00 0.00 0.00 2.75
2910 4022 6.757897 TTGCAGAATCGGTTATCAAAATCT 57.242 33.333 0.00 0.00 0.00 2.40
2911 4023 6.253512 GGTTTGCAGAATCGGTTATCAAAATC 59.746 38.462 4.46 0.00 0.00 2.17
2912 4024 6.099341 GGTTTGCAGAATCGGTTATCAAAAT 58.901 36.000 4.46 0.00 0.00 1.82
2913 4025 5.465935 GGTTTGCAGAATCGGTTATCAAAA 58.534 37.500 4.46 0.00 0.00 2.44
2914 4026 4.378978 CGGTTTGCAGAATCGGTTATCAAA 60.379 41.667 6.44 0.00 0.00 2.69
2915 4027 3.126171 CGGTTTGCAGAATCGGTTATCAA 59.874 43.478 6.44 0.00 0.00 2.57
2916 4028 2.675844 CGGTTTGCAGAATCGGTTATCA 59.324 45.455 6.44 0.00 0.00 2.15
2917 4029 2.031683 CCGGTTTGCAGAATCGGTTATC 59.968 50.000 19.08 0.00 36.38 1.75
2918 4030 2.014128 CCGGTTTGCAGAATCGGTTAT 58.986 47.619 19.08 0.00 36.38 1.89
2919 4031 1.444836 CCGGTTTGCAGAATCGGTTA 58.555 50.000 19.08 0.00 36.38 2.85
2920 4032 1.241315 CCCGGTTTGCAGAATCGGTT 61.241 55.000 22.89 0.00 39.13 4.44
2921 4033 1.674322 CCCGGTTTGCAGAATCGGT 60.674 57.895 22.89 0.00 39.13 4.69
2922 4034 3.051392 GCCCGGTTTGCAGAATCGG 62.051 63.158 19.91 19.91 40.32 4.18
2923 4035 1.982073 GAGCCCGGTTTGCAGAATCG 61.982 60.000 0.00 7.14 0.00 3.34
2924 4036 1.657751 GGAGCCCGGTTTGCAGAATC 61.658 60.000 0.00 0.00 0.00 2.52
2925 4037 1.678970 GGAGCCCGGTTTGCAGAAT 60.679 57.895 0.00 0.00 0.00 2.40
2926 4038 1.485294 TAGGAGCCCGGTTTGCAGAA 61.485 55.000 0.00 0.00 0.00 3.02
2927 4039 1.899437 CTAGGAGCCCGGTTTGCAGA 61.899 60.000 0.00 0.00 0.00 4.26
2928 4040 1.450312 CTAGGAGCCCGGTTTGCAG 60.450 63.158 0.00 0.00 0.00 4.41
2929 4041 1.899437 CTCTAGGAGCCCGGTTTGCA 61.899 60.000 0.00 0.00 0.00 4.08
2930 4042 1.153349 CTCTAGGAGCCCGGTTTGC 60.153 63.158 0.00 0.00 0.00 3.68
2931 4043 1.265454 ACCTCTAGGAGCCCGGTTTG 61.265 60.000 2.23 0.00 38.94 2.93
2932 4044 0.337428 TACCTCTAGGAGCCCGGTTT 59.663 55.000 2.23 0.00 38.94 3.27
2933 4045 0.106116 CTACCTCTAGGAGCCCGGTT 60.106 60.000 2.23 0.00 38.94 4.44
2934 4046 0.992431 TCTACCTCTAGGAGCCCGGT 60.992 60.000 2.23 0.00 38.94 5.28
2935 4047 0.250989 CTCTACCTCTAGGAGCCCGG 60.251 65.000 2.23 0.00 38.94 5.73
2936 4048 0.475044 ACTCTACCTCTAGGAGCCCG 59.525 60.000 2.23 0.00 38.94 6.13
2937 4049 3.880168 TTACTCTACCTCTAGGAGCCC 57.120 52.381 2.23 0.00 38.94 5.19
2938 4050 6.734502 ATTTTTACTCTACCTCTAGGAGCC 57.265 41.667 2.23 0.00 38.94 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.