Multiple sequence alignment - TraesCS6D01G049700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G049700 chr6D 100.000 3114 0 0 1 3114 24029526 24032639 0.000000e+00 5751.0
1 TraesCS6D01G049700 chr6D 98.907 1556 17 0 1559 3114 246208417 246206862 0.000000e+00 2780.0
2 TraesCS6D01G049700 chr6D 98.148 54 1 0 739 792 362955525 362955472 9.190000e-16 95.3
3 TraesCS6D01G049700 chr3D 99.229 2335 8 3 790 3114 28478518 28480852 0.000000e+00 4204.0
4 TraesCS6D01G049700 chr3D 98.628 2113 21 1 1010 3114 40718834 40716722 0.000000e+00 3735.0
5 TraesCS6D01G049700 chr3D 97.727 44 1 0 739 782 441369145 441369102 3.330000e-10 76.8
6 TraesCS6D01G049700 chr7D 97.063 2349 26 12 790 3114 548208141 548210470 0.000000e+00 3916.0
7 TraesCS6D01G049700 chr7D 88.820 1127 75 18 790 1892 463877200 463876101 0.000000e+00 1336.0
8 TraesCS6D01G049700 chr7D 96.121 232 9 0 2883 3114 463874885 463874654 2.270000e-101 379.0
9 TraesCS6D01G049700 chr7D 94.737 38 2 0 604 641 529381951 529381988 3.350000e-05 60.2
10 TraesCS6D01G049700 chr4D 92.254 1562 63 26 797 2339 450714181 450715703 0.000000e+00 2161.0
11 TraesCS6D01G049700 chr4D 89.097 1119 72 18 797 1892 134536826 134537917 0.000000e+00 1345.0
12 TraesCS6D01G049700 chr4D 96.671 781 26 0 2334 3114 450716153 450716933 0.000000e+00 1299.0
13 TraesCS6D01G049700 chr4D 92.593 54 4 0 739 792 457066793 457066740 9.260000e-11 78.7
14 TraesCS6D01G049700 chr3B 91.677 1574 91 14 798 2339 782651446 782649881 0.000000e+00 2145.0
15 TraesCS6D01G049700 chr3B 93.582 779 38 5 2334 3112 782649410 782648644 0.000000e+00 1151.0
16 TraesCS6D01G049700 chr3B 87.619 735 79 5 2334 3058 763474787 763474055 0.000000e+00 843.0
17 TraesCS6D01G049700 chr3B 94.643 56 3 0 736 791 39596368 39596423 1.540000e-13 87.9
18 TraesCS6D01G049700 chr4A 91.209 1547 90 19 796 2309 343932908 343934441 0.000000e+00 2061.0
19 TraesCS6D01G049700 chr4A 94.904 471 22 2 2334 2803 343934934 343935403 0.000000e+00 736.0
20 TraesCS6D01G049700 chr4A 94.175 309 18 0 2806 3114 343936360 343936668 3.640000e-129 472.0
21 TraesCS6D01G049700 chr4A 92.982 57 4 0 736 792 366539149 366539093 1.990000e-12 84.2
22 TraesCS6D01G049700 chr1A 88.109 1539 137 21 798 2309 55131564 55133083 0.000000e+00 1786.0
23 TraesCS6D01G049700 chr1A 93.321 554 34 3 2336 2888 55133552 55134103 0.000000e+00 815.0
24 TraesCS6D01G049700 chr1A 88.762 525 52 5 1738 2260 558022251 558022770 1.220000e-178 636.0
25 TraesCS6D01G049700 chr2D 87.957 1121 81 19 797 1892 93808369 93809460 0.000000e+00 1273.0
26 TraesCS6D01G049700 chr2D 96.121 232 9 0 2883 3114 93810686 93810917 2.270000e-101 379.0
27 TraesCS6D01G049700 chr2A 90.077 776 62 6 2347 3112 135277482 135278252 0.000000e+00 992.0
28 TraesCS6D01G049700 chr2A 86.607 224 27 1 1 224 29262346 29262566 8.630000e-61 244.0
29 TraesCS6D01G049700 chr2A 88.776 98 3 3 2244 2333 135276886 135276983 2.540000e-21 113.0
30 TraesCS6D01G049700 chr6B 90.234 768 52 15 1 757 38971588 38972343 0.000000e+00 981.0
31 TraesCS6D01G049700 chr6B 94.828 58 2 1 736 792 578466192 578466249 4.280000e-14 89.8
32 TraesCS6D01G049700 chr6A 88.185 821 49 23 1 784 22555592 22556401 0.000000e+00 935.0
33 TraesCS6D01G049700 chr6A 86.697 218 27 2 788 1004 454682895 454683111 1.120000e-59 241.0
34 TraesCS6D01G049700 chr6A 86.222 225 21 5 2123 2339 36491221 36491443 5.190000e-58 235.0
35 TraesCS6D01G049700 chr6A 88.333 60 6 1 736 795 600809748 600809806 1.550000e-08 71.3
36 TraesCS6D01G049700 chr2B 87.168 226 22 5 1 224 42264600 42264820 1.850000e-62 250.0
37 TraesCS6D01G049700 chrUn 93.103 58 3 1 736 792 2874640 2874697 1.990000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G049700 chr6D 24029526 24032639 3113 False 5751.000000 5751 100.000000 1 3114 1 chr6D.!!$F1 3113
1 TraesCS6D01G049700 chr6D 246206862 246208417 1555 True 2780.000000 2780 98.907000 1559 3114 1 chr6D.!!$R1 1555
2 TraesCS6D01G049700 chr3D 28478518 28480852 2334 False 4204.000000 4204 99.229000 790 3114 1 chr3D.!!$F1 2324
3 TraesCS6D01G049700 chr3D 40716722 40718834 2112 True 3735.000000 3735 98.628000 1010 3114 1 chr3D.!!$R1 2104
4 TraesCS6D01G049700 chr7D 548208141 548210470 2329 False 3916.000000 3916 97.063000 790 3114 1 chr7D.!!$F2 2324
5 TraesCS6D01G049700 chr7D 463874654 463877200 2546 True 857.500000 1336 92.470500 790 3114 2 chr7D.!!$R1 2324
6 TraesCS6D01G049700 chr4D 450714181 450716933 2752 False 1730.000000 2161 94.462500 797 3114 2 chr4D.!!$F2 2317
7 TraesCS6D01G049700 chr4D 134536826 134537917 1091 False 1345.000000 1345 89.097000 797 1892 1 chr4D.!!$F1 1095
8 TraesCS6D01G049700 chr3B 782648644 782651446 2802 True 1648.000000 2145 92.629500 798 3112 2 chr3B.!!$R2 2314
9 TraesCS6D01G049700 chr3B 763474055 763474787 732 True 843.000000 843 87.619000 2334 3058 1 chr3B.!!$R1 724
10 TraesCS6D01G049700 chr4A 343932908 343936668 3760 False 1089.666667 2061 93.429333 796 3114 3 chr4A.!!$F1 2318
11 TraesCS6D01G049700 chr1A 55131564 55134103 2539 False 1300.500000 1786 90.715000 798 2888 2 chr1A.!!$F2 2090
12 TraesCS6D01G049700 chr1A 558022251 558022770 519 False 636.000000 636 88.762000 1738 2260 1 chr1A.!!$F1 522
13 TraesCS6D01G049700 chr2D 93808369 93810917 2548 False 826.000000 1273 92.039000 797 3114 2 chr2D.!!$F1 2317
14 TraesCS6D01G049700 chr2A 135276886 135278252 1366 False 552.500000 992 89.426500 2244 3112 2 chr2A.!!$F2 868
15 TraesCS6D01G049700 chr6B 38971588 38972343 755 False 981.000000 981 90.234000 1 757 1 chr6B.!!$F1 756
16 TraesCS6D01G049700 chr6A 22555592 22556401 809 False 935.000000 935 88.185000 1 784 1 chr6A.!!$F1 783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 266 0.035439 TTTAGCCAGGCCTTCCTTCG 60.035 55.0 8.22 0.00 41.93 3.79 F
274 275 0.393132 GCCTTCCTTCGGCTAAGCTT 60.393 55.0 3.48 3.48 44.17 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1666 1995 6.833342 AACTGAATTGTGCAAAATCAAGTC 57.167 33.333 14.41 11.35 0.00 3.01 R
3018 4895 2.490328 ACTTGTTGGTTGATGCAACG 57.510 45.000 0.00 0.00 44.36 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 174 0.963962 TCCACCGAGGTCAAGTACAC 59.036 55.000 0.00 0.00 39.02 2.90
174 175 0.037605 CCACCGAGGTCAAGTACACC 60.038 60.000 0.00 0.00 0.00 4.16
179 180 1.972978 AGGTCAAGTACACCTCCGC 59.027 57.895 0.00 0.00 40.54 5.54
180 181 1.079336 GGTCAAGTACACCTCCGCC 60.079 63.158 0.00 0.00 0.00 6.13
181 182 1.542187 GGTCAAGTACACCTCCGCCT 61.542 60.000 0.00 0.00 0.00 5.52
182 183 0.320697 GTCAAGTACACCTCCGCCTT 59.679 55.000 0.00 0.00 0.00 4.35
183 184 0.606604 TCAAGTACACCTCCGCCTTC 59.393 55.000 0.00 0.00 0.00 3.46
184 185 0.608640 CAAGTACACCTCCGCCTTCT 59.391 55.000 0.00 0.00 0.00 2.85
185 186 0.896226 AAGTACACCTCCGCCTTCTC 59.104 55.000 0.00 0.00 0.00 2.87
186 187 0.251653 AGTACACCTCCGCCTTCTCA 60.252 55.000 0.00 0.00 0.00 3.27
187 188 0.173708 GTACACCTCCGCCTTCTCAG 59.826 60.000 0.00 0.00 0.00 3.35
188 189 0.039180 TACACCTCCGCCTTCTCAGA 59.961 55.000 0.00 0.00 0.00 3.27
189 190 1.216710 CACCTCCGCCTTCTCAGAC 59.783 63.158 0.00 0.00 0.00 3.51
190 191 2.344203 ACCTCCGCCTTCTCAGACG 61.344 63.158 0.00 0.00 0.00 4.18
191 192 2.046864 CCTCCGCCTTCTCAGACGA 61.047 63.158 0.00 0.00 0.00 4.20
192 193 1.431440 CTCCGCCTTCTCAGACGAG 59.569 63.158 0.00 0.00 40.98 4.18
193 194 1.002502 TCCGCCTTCTCAGACGAGA 60.003 57.895 0.00 0.00 46.80 4.04
200 201 3.450282 TCTCAGACGAGAACCCCAA 57.550 52.632 0.00 0.00 45.47 4.12
201 202 0.966920 TCTCAGACGAGAACCCCAAC 59.033 55.000 0.00 0.00 45.47 3.77
202 203 0.388649 CTCAGACGAGAACCCCAACG 60.389 60.000 0.00 0.00 42.34 4.10
203 204 2.027625 CAGACGAGAACCCCAACGC 61.028 63.158 0.00 0.00 0.00 4.84
204 205 2.207924 AGACGAGAACCCCAACGCT 61.208 57.895 0.00 0.00 0.00 5.07
205 206 2.027625 GACGAGAACCCCAACGCTG 61.028 63.158 0.00 0.00 0.00 5.18
206 207 3.423154 CGAGAACCCCAACGCTGC 61.423 66.667 0.00 0.00 0.00 5.25
207 208 2.281484 GAGAACCCCAACGCTGCA 60.281 61.111 0.00 0.00 0.00 4.41
208 209 1.675641 GAGAACCCCAACGCTGCAT 60.676 57.895 0.00 0.00 0.00 3.96
209 210 1.926511 GAGAACCCCAACGCTGCATG 61.927 60.000 0.00 0.00 0.00 4.06
210 211 3.631487 GAACCCCAACGCTGCATGC 62.631 63.158 11.82 11.82 38.57 4.06
219 220 4.899687 GCTGCATGCGCCGTCATG 62.900 66.667 19.44 14.38 44.93 3.07
220 221 3.502455 CTGCATGCGCCGTCATGT 61.502 61.111 14.09 0.00 44.20 3.21
221 222 2.125350 TGCATGCGCCGTCATGTA 60.125 55.556 14.09 13.24 44.20 2.29
222 223 2.097661 CTGCATGCGCCGTCATGTAG 62.098 60.000 18.66 18.66 45.67 2.74
223 224 2.173669 GCATGCGCCGTCATGTAGT 61.174 57.895 18.04 0.00 44.20 2.73
224 225 1.927210 CATGCGCCGTCATGTAGTC 59.073 57.895 4.18 0.00 39.10 2.59
225 226 1.588932 ATGCGCCGTCATGTAGTCG 60.589 57.895 4.18 0.00 0.00 4.18
229 230 4.088421 CCGTCATGTAGTCGGTGC 57.912 61.111 11.07 0.00 42.79 5.01
230 231 1.511305 CCGTCATGTAGTCGGTGCT 59.489 57.895 11.07 0.00 42.79 4.40
231 232 0.525668 CCGTCATGTAGTCGGTGCTC 60.526 60.000 11.07 0.00 42.79 4.26
232 233 0.861866 CGTCATGTAGTCGGTGCTCG 60.862 60.000 0.00 0.00 40.90 5.03
233 234 0.170561 GTCATGTAGTCGGTGCTCGT 59.829 55.000 0.00 0.00 40.32 4.18
234 235 0.170339 TCATGTAGTCGGTGCTCGTG 59.830 55.000 0.00 0.00 40.32 4.35
235 236 1.153823 ATGTAGTCGGTGCTCGTGC 60.154 57.895 1.71 1.71 40.32 5.34
236 237 2.867333 ATGTAGTCGGTGCTCGTGCG 62.867 60.000 4.84 0.00 43.34 5.34
237 238 3.359523 TAGTCGGTGCTCGTGCGT 61.360 61.111 4.84 0.00 43.34 5.24
238 239 2.034317 TAGTCGGTGCTCGTGCGTA 61.034 57.895 4.84 0.00 43.34 4.42
239 240 1.974249 TAGTCGGTGCTCGTGCGTAG 61.974 60.000 4.84 0.00 43.34 3.51
254 255 1.871080 CGTAGCCATCCTTTAGCCAG 58.129 55.000 0.00 0.00 0.00 4.85
255 256 1.541233 CGTAGCCATCCTTTAGCCAGG 60.541 57.143 0.00 0.00 34.86 4.45
256 257 0.474184 TAGCCATCCTTTAGCCAGGC 59.526 55.000 1.84 1.84 42.31 4.85
257 258 1.829970 GCCATCCTTTAGCCAGGCC 60.830 63.158 8.22 0.00 36.17 5.19
258 259 1.925888 CCATCCTTTAGCCAGGCCT 59.074 57.895 8.22 0.00 33.35 5.19
259 260 0.259938 CCATCCTTTAGCCAGGCCTT 59.740 55.000 8.22 0.00 33.35 4.35
260 261 1.685148 CATCCTTTAGCCAGGCCTTC 58.315 55.000 8.22 0.00 33.35 3.46
261 262 0.553333 ATCCTTTAGCCAGGCCTTCC 59.447 55.000 8.22 0.00 33.35 3.46
262 263 0.550147 TCCTTTAGCCAGGCCTTCCT 60.550 55.000 8.22 4.57 45.66 3.36
263 264 0.332972 CCTTTAGCCAGGCCTTCCTT 59.667 55.000 8.22 0.00 41.93 3.36
264 265 1.683319 CCTTTAGCCAGGCCTTCCTTC 60.683 57.143 8.22 0.00 41.93 3.46
265 266 0.035439 TTTAGCCAGGCCTTCCTTCG 60.035 55.000 8.22 0.00 41.93 3.79
266 267 1.910580 TTAGCCAGGCCTTCCTTCGG 61.911 60.000 8.22 0.00 41.93 4.30
268 269 3.721706 CCAGGCCTTCCTTCGGCT 61.722 66.667 0.00 0.00 46.73 5.52
269 270 2.367202 CCAGGCCTTCCTTCGGCTA 61.367 63.158 0.00 0.00 46.73 3.93
270 271 1.602237 CAGGCCTTCCTTCGGCTAA 59.398 57.895 0.00 0.00 46.73 3.09
271 272 0.462759 CAGGCCTTCCTTCGGCTAAG 60.463 60.000 0.00 0.00 46.73 2.18
272 273 1.820056 GGCCTTCCTTCGGCTAAGC 60.820 63.158 0.00 0.00 46.73 3.09
273 274 1.222113 GCCTTCCTTCGGCTAAGCT 59.778 57.895 0.00 0.00 44.17 3.74
274 275 0.393132 GCCTTCCTTCGGCTAAGCTT 60.393 55.000 3.48 3.48 44.17 3.74
275 276 1.373570 CCTTCCTTCGGCTAAGCTTG 58.626 55.000 9.86 0.01 33.49 4.01
276 277 1.339151 CCTTCCTTCGGCTAAGCTTGT 60.339 52.381 9.86 0.00 33.49 3.16
277 278 2.093658 CCTTCCTTCGGCTAAGCTTGTA 60.094 50.000 9.86 0.00 33.49 2.41
278 279 2.961526 TCCTTCGGCTAAGCTTGTAG 57.038 50.000 9.86 0.00 33.49 2.74
279 280 2.176889 TCCTTCGGCTAAGCTTGTAGT 58.823 47.619 9.86 0.00 33.49 2.73
280 281 3.359033 TCCTTCGGCTAAGCTTGTAGTA 58.641 45.455 9.86 0.00 33.49 1.82
281 282 3.380637 TCCTTCGGCTAAGCTTGTAGTAG 59.619 47.826 9.86 0.00 33.49 2.57
282 283 3.491104 CCTTCGGCTAAGCTTGTAGTAGG 60.491 52.174 9.86 6.75 33.49 3.18
283 284 2.731572 TCGGCTAAGCTTGTAGTAGGT 58.268 47.619 9.86 0.00 0.00 3.08
284 285 2.686915 TCGGCTAAGCTTGTAGTAGGTC 59.313 50.000 9.86 0.00 0.00 3.85
285 286 2.223758 CGGCTAAGCTTGTAGTAGGTCC 60.224 54.545 9.86 0.00 0.00 4.46
286 287 2.223758 GGCTAAGCTTGTAGTAGGTCCG 60.224 54.545 9.86 0.00 0.00 4.79
287 288 2.426381 GCTAAGCTTGTAGTAGGTCCGT 59.574 50.000 9.86 0.00 0.00 4.69
288 289 3.734293 GCTAAGCTTGTAGTAGGTCCGTG 60.734 52.174 9.86 0.00 0.00 4.94
289 290 1.920610 AGCTTGTAGTAGGTCCGTGT 58.079 50.000 0.00 0.00 0.00 4.49
290 291 3.077484 AGCTTGTAGTAGGTCCGTGTA 57.923 47.619 0.00 0.00 0.00 2.90
291 292 3.424703 AGCTTGTAGTAGGTCCGTGTAA 58.575 45.455 0.00 0.00 0.00 2.41
292 293 4.021916 AGCTTGTAGTAGGTCCGTGTAAT 58.978 43.478 0.00 0.00 0.00 1.89
293 294 4.465305 AGCTTGTAGTAGGTCCGTGTAATT 59.535 41.667 0.00 0.00 0.00 1.40
294 295 5.046807 AGCTTGTAGTAGGTCCGTGTAATTT 60.047 40.000 0.00 0.00 0.00 1.82
295 296 5.640783 GCTTGTAGTAGGTCCGTGTAATTTT 59.359 40.000 0.00 0.00 0.00 1.82
296 297 6.148315 GCTTGTAGTAGGTCCGTGTAATTTTT 59.852 38.462 0.00 0.00 0.00 1.94
297 298 7.424227 TTGTAGTAGGTCCGTGTAATTTTTG 57.576 36.000 0.00 0.00 0.00 2.44
298 299 5.933463 TGTAGTAGGTCCGTGTAATTTTTGG 59.067 40.000 0.00 0.00 0.00 3.28
299 300 5.231702 AGTAGGTCCGTGTAATTTTTGGA 57.768 39.130 0.00 0.00 0.00 3.53
300 301 5.243207 AGTAGGTCCGTGTAATTTTTGGAG 58.757 41.667 0.00 0.00 0.00 3.86
301 302 3.418047 AGGTCCGTGTAATTTTTGGAGG 58.582 45.455 0.00 0.00 0.00 4.30
302 303 3.151554 GGTCCGTGTAATTTTTGGAGGT 58.848 45.455 0.00 0.00 0.00 3.85
303 304 3.189910 GGTCCGTGTAATTTTTGGAGGTC 59.810 47.826 0.00 0.00 0.00 3.85
304 305 3.068560 TCCGTGTAATTTTTGGAGGTCG 58.931 45.455 0.00 0.00 0.00 4.79
305 306 2.809696 CCGTGTAATTTTTGGAGGTCGT 59.190 45.455 0.00 0.00 0.00 4.34
306 307 3.120442 CCGTGTAATTTTTGGAGGTCGTC 60.120 47.826 0.00 0.00 0.00 4.20
307 308 3.744426 CGTGTAATTTTTGGAGGTCGTCT 59.256 43.478 0.00 0.00 0.00 4.18
308 309 4.377022 CGTGTAATTTTTGGAGGTCGTCTG 60.377 45.833 0.00 0.00 0.00 3.51
309 310 4.514066 GTGTAATTTTTGGAGGTCGTCTGT 59.486 41.667 0.00 0.00 0.00 3.41
310 311 5.697633 GTGTAATTTTTGGAGGTCGTCTGTA 59.302 40.000 0.00 0.00 0.00 2.74
311 312 6.370718 GTGTAATTTTTGGAGGTCGTCTGTAT 59.629 38.462 0.00 0.00 0.00 2.29
312 313 7.546667 GTGTAATTTTTGGAGGTCGTCTGTATA 59.453 37.037 0.00 0.00 0.00 1.47
313 314 8.095792 TGTAATTTTTGGAGGTCGTCTGTATAA 58.904 33.333 0.00 0.00 0.00 0.98
314 315 9.106070 GTAATTTTTGGAGGTCGTCTGTATAAT 57.894 33.333 0.00 0.00 0.00 1.28
315 316 8.575649 AATTTTTGGAGGTCGTCTGTATAATT 57.424 30.769 0.00 0.00 0.00 1.40
316 317 9.675464 AATTTTTGGAGGTCGTCTGTATAATTA 57.325 29.630 0.00 0.00 0.00 1.40
317 318 9.847224 ATTTTTGGAGGTCGTCTGTATAATTAT 57.153 29.630 2.97 2.97 0.00 1.28
318 319 9.675464 TTTTTGGAGGTCGTCTGTATAATTATT 57.325 29.630 2.68 0.00 0.00 1.40
319 320 9.675464 TTTTGGAGGTCGTCTGTATAATTATTT 57.325 29.630 2.68 0.00 0.00 1.40
320 321 9.675464 TTTGGAGGTCGTCTGTATAATTATTTT 57.325 29.630 2.68 0.00 0.00 1.82
321 322 8.657074 TGGAGGTCGTCTGTATAATTATTTTG 57.343 34.615 2.68 0.00 0.00 2.44
322 323 7.225931 TGGAGGTCGTCTGTATAATTATTTTGC 59.774 37.037 2.68 0.00 0.00 3.68
323 324 7.225931 GGAGGTCGTCTGTATAATTATTTTGCA 59.774 37.037 2.68 0.00 0.00 4.08
324 325 7.916552 AGGTCGTCTGTATAATTATTTTGCAC 58.083 34.615 2.68 0.00 0.00 4.57
325 326 6.844279 GGTCGTCTGTATAATTATTTTGCACG 59.156 38.462 2.68 6.76 0.00 5.34
326 327 7.396419 GTCGTCTGTATAATTATTTTGCACGT 58.604 34.615 2.68 0.00 0.00 4.49
327 328 7.901377 GTCGTCTGTATAATTATTTTGCACGTT 59.099 33.333 2.68 0.00 0.00 3.99
328 329 7.900864 TCGTCTGTATAATTATTTTGCACGTTG 59.099 33.333 2.68 0.00 0.00 4.10
329 330 7.690637 CGTCTGTATAATTATTTTGCACGTTGT 59.309 33.333 2.68 0.00 0.00 3.32
330 331 9.976255 GTCTGTATAATTATTTTGCACGTTGTA 57.024 29.630 2.68 0.00 0.00 2.41
331 332 9.976255 TCTGTATAATTATTTTGCACGTTGTAC 57.024 29.630 2.68 0.00 0.00 2.90
332 333 9.982291 CTGTATAATTATTTTGCACGTTGTACT 57.018 29.630 2.68 0.00 0.00 2.73
333 334 9.976255 TGTATAATTATTTTGCACGTTGTACTC 57.024 29.630 2.68 0.00 0.00 2.59
334 335 9.976255 GTATAATTATTTTGCACGTTGTACTCA 57.024 29.630 2.68 0.00 0.00 3.41
346 347 4.287238 GTTGTACTCAACCCACAAAGTG 57.713 45.455 0.00 0.00 45.60 3.16
347 348 3.916359 TGTACTCAACCCACAAAGTGA 57.084 42.857 0.00 0.00 35.23 3.41
348 349 4.223556 TGTACTCAACCCACAAAGTGAA 57.776 40.909 0.00 0.00 35.23 3.18
349 350 4.590918 TGTACTCAACCCACAAAGTGAAA 58.409 39.130 0.00 0.00 35.23 2.69
350 351 5.197451 TGTACTCAACCCACAAAGTGAAAT 58.803 37.500 0.00 0.00 35.23 2.17
351 352 5.654650 TGTACTCAACCCACAAAGTGAAATT 59.345 36.000 0.00 0.00 35.23 1.82
352 353 5.009854 ACTCAACCCACAAAGTGAAATTG 57.990 39.130 0.00 1.13 35.23 2.32
353 354 4.466015 ACTCAACCCACAAAGTGAAATTGT 59.534 37.500 0.00 0.00 41.50 2.71
354 355 5.654650 ACTCAACCCACAAAGTGAAATTGTA 59.345 36.000 0.00 0.00 38.90 2.41
355 356 6.153680 ACTCAACCCACAAAGTGAAATTGTAA 59.846 34.615 0.00 0.00 38.90 2.41
356 357 6.936279 TCAACCCACAAAGTGAAATTGTAAA 58.064 32.000 0.00 0.00 38.90 2.01
357 358 7.560368 TCAACCCACAAAGTGAAATTGTAAAT 58.440 30.769 0.00 0.00 38.90 1.40
358 359 8.043710 TCAACCCACAAAGTGAAATTGTAAATT 58.956 29.630 0.00 0.00 38.90 1.82
359 360 9.319143 CAACCCACAAAGTGAAATTGTAAATTA 57.681 29.630 0.00 0.00 38.90 1.40
384 385 8.782339 ATAGTACTTGTTTATTGCCTTTACGT 57.218 30.769 0.00 0.00 0.00 3.57
385 386 9.874205 ATAGTACTTGTTTATTGCCTTTACGTA 57.126 29.630 0.00 0.00 0.00 3.57
386 387 8.248117 AGTACTTGTTTATTGCCTTTACGTAG 57.752 34.615 0.00 0.00 0.00 3.51
387 388 5.934921 ACTTGTTTATTGCCTTTACGTAGC 58.065 37.500 0.00 0.00 0.00 3.58
388 389 5.704053 ACTTGTTTATTGCCTTTACGTAGCT 59.296 36.000 6.82 0.00 0.00 3.32
389 390 6.875195 ACTTGTTTATTGCCTTTACGTAGCTA 59.125 34.615 6.82 0.00 0.00 3.32
390 391 6.897259 TGTTTATTGCCTTTACGTAGCTAG 57.103 37.500 0.00 1.65 0.00 3.42
391 392 6.400568 TGTTTATTGCCTTTACGTAGCTAGT 58.599 36.000 0.00 0.00 0.00 2.57
392 393 7.546358 TGTTTATTGCCTTTACGTAGCTAGTA 58.454 34.615 0.00 0.00 0.00 1.82
393 394 7.703621 TGTTTATTGCCTTTACGTAGCTAGTAG 59.296 37.037 0.00 0.00 0.00 2.57
394 395 5.848833 ATTGCCTTTACGTAGCTAGTAGT 57.151 39.130 0.00 0.00 0.00 2.73
395 396 5.649782 TTGCCTTTACGTAGCTAGTAGTT 57.350 39.130 0.00 0.00 0.00 2.24
396 397 6.757897 TTGCCTTTACGTAGCTAGTAGTTA 57.242 37.500 0.00 0.00 0.00 2.24
397 398 6.369059 TGCCTTTACGTAGCTAGTAGTTAG 57.631 41.667 0.00 0.00 0.00 2.34
414 415 8.813643 AGTAGTTAGCTTGTTACAGTAGTTTG 57.186 34.615 0.00 0.00 0.00 2.93
415 416 8.419442 AGTAGTTAGCTTGTTACAGTAGTTTGT 58.581 33.333 0.00 0.00 35.09 2.83
416 417 7.478520 AGTTAGCTTGTTACAGTAGTTTGTG 57.521 36.000 0.00 0.00 32.56 3.33
417 418 7.270047 AGTTAGCTTGTTACAGTAGTTTGTGA 58.730 34.615 0.00 0.00 32.56 3.58
418 419 7.931948 AGTTAGCTTGTTACAGTAGTTTGTGAT 59.068 33.333 0.00 0.00 32.56 3.06
419 420 8.557029 GTTAGCTTGTTACAGTAGTTTGTGATT 58.443 33.333 0.00 0.00 32.56 2.57
420 421 7.568199 AGCTTGTTACAGTAGTTTGTGATTT 57.432 32.000 0.00 0.00 32.56 2.17
421 422 7.996385 AGCTTGTTACAGTAGTTTGTGATTTT 58.004 30.769 0.00 0.00 32.56 1.82
422 423 7.915397 AGCTTGTTACAGTAGTTTGTGATTTTG 59.085 33.333 0.00 0.00 32.56 2.44
423 424 7.913297 GCTTGTTACAGTAGTTTGTGATTTTGA 59.087 33.333 0.00 0.00 32.56 2.69
424 425 9.781834 CTTGTTACAGTAGTTTGTGATTTTGAA 57.218 29.630 0.00 0.00 32.56 2.69
425 426 9.562583 TTGTTACAGTAGTTTGTGATTTTGAAC 57.437 29.630 0.00 0.00 32.56 3.18
426 427 8.185505 TGTTACAGTAGTTTGTGATTTTGAACC 58.814 33.333 0.00 0.00 32.56 3.62
427 428 6.767524 ACAGTAGTTTGTGATTTTGAACCA 57.232 33.333 0.00 0.00 0.00 3.67
428 429 6.795399 ACAGTAGTTTGTGATTTTGAACCAG 58.205 36.000 0.00 0.00 0.00 4.00
429 430 6.183360 ACAGTAGTTTGTGATTTTGAACCAGG 60.183 38.462 0.00 0.00 0.00 4.45
430 431 4.670896 AGTTTGTGATTTTGAACCAGGG 57.329 40.909 0.00 0.00 0.00 4.45
431 432 3.387699 AGTTTGTGATTTTGAACCAGGGG 59.612 43.478 0.00 0.00 0.00 4.79
432 433 3.320610 TTGTGATTTTGAACCAGGGGA 57.679 42.857 0.00 0.00 0.00 4.81
433 434 3.541242 TGTGATTTTGAACCAGGGGAT 57.459 42.857 0.00 0.00 0.00 3.85
434 435 3.855668 TGTGATTTTGAACCAGGGGATT 58.144 40.909 0.00 0.00 0.00 3.01
435 436 3.831911 TGTGATTTTGAACCAGGGGATTC 59.168 43.478 0.00 0.00 0.00 2.52
436 437 3.831911 GTGATTTTGAACCAGGGGATTCA 59.168 43.478 0.00 0.00 33.03 2.57
437 438 4.082026 GTGATTTTGAACCAGGGGATTCAG 60.082 45.833 0.00 0.00 36.26 3.02
438 439 3.611025 TTTTGAACCAGGGGATTCAGT 57.389 42.857 0.00 0.00 36.26 3.41
439 440 3.611025 TTTGAACCAGGGGATTCAGTT 57.389 42.857 0.00 0.00 36.26 3.16
440 441 2.879103 TGAACCAGGGGATTCAGTTC 57.121 50.000 0.00 0.00 37.83 3.01
441 442 1.354368 TGAACCAGGGGATTCAGTTCC 59.646 52.381 0.00 0.00 36.78 3.62
442 443 1.636003 GAACCAGGGGATTCAGTTCCT 59.364 52.381 0.00 0.00 35.97 3.36
443 444 1.760405 ACCAGGGGATTCAGTTCCTT 58.240 50.000 0.00 0.00 35.97 3.36
444 445 1.355720 ACCAGGGGATTCAGTTCCTTG 59.644 52.381 0.00 0.00 35.97 3.61
445 446 1.355720 CCAGGGGATTCAGTTCCTTGT 59.644 52.381 0.00 0.00 35.97 3.16
446 447 2.225117 CCAGGGGATTCAGTTCCTTGTT 60.225 50.000 0.00 0.00 35.97 2.83
447 448 3.500343 CAGGGGATTCAGTTCCTTGTTT 58.500 45.455 0.00 0.00 35.97 2.83
448 449 4.508405 CCAGGGGATTCAGTTCCTTGTTTA 60.508 45.833 0.00 0.00 35.97 2.01
449 450 4.702131 CAGGGGATTCAGTTCCTTGTTTAG 59.298 45.833 0.00 0.00 35.97 1.85
450 451 4.354087 AGGGGATTCAGTTCCTTGTTTAGT 59.646 41.667 0.00 0.00 35.97 2.24
451 452 4.459337 GGGGATTCAGTTCCTTGTTTAGTG 59.541 45.833 0.00 0.00 35.97 2.74
452 453 5.070685 GGGATTCAGTTCCTTGTTTAGTGT 58.929 41.667 0.00 0.00 35.97 3.55
453 454 6.235664 GGGATTCAGTTCCTTGTTTAGTGTA 58.764 40.000 0.00 0.00 35.97 2.90
454 455 6.713450 GGGATTCAGTTCCTTGTTTAGTGTAA 59.287 38.462 0.00 0.00 35.97 2.41
455 456 7.094762 GGGATTCAGTTCCTTGTTTAGTGTAAG 60.095 40.741 0.00 0.00 35.97 2.34
456 457 7.660208 GGATTCAGTTCCTTGTTTAGTGTAAGA 59.340 37.037 0.00 0.00 32.68 2.10
457 458 9.220767 GATTCAGTTCCTTGTTTAGTGTAAGAT 57.779 33.333 0.00 0.00 0.00 2.40
459 460 9.485206 TTCAGTTCCTTGTTTAGTGTAAGATAC 57.515 33.333 0.00 0.00 0.00 2.24
460 461 8.867097 TCAGTTCCTTGTTTAGTGTAAGATACT 58.133 33.333 0.00 0.00 0.00 2.12
549 550 9.588096 AGAGTTACAATTCCATTTCTTACCTTT 57.412 29.630 0.00 0.00 0.00 3.11
565 566 9.733219 TTCTTACCTTTATTTTAACGTTTGTGG 57.267 29.630 5.91 0.98 0.00 4.17
566 567 7.861872 TCTTACCTTTATTTTAACGTTTGTGGC 59.138 33.333 5.91 0.00 0.00 5.01
567 568 5.903810 ACCTTTATTTTAACGTTTGTGGCA 58.096 33.333 5.91 0.00 0.00 4.92
568 569 6.338937 ACCTTTATTTTAACGTTTGTGGCAA 58.661 32.000 5.91 0.00 0.00 4.52
569 570 6.256104 ACCTTTATTTTAACGTTTGTGGCAAC 59.744 34.615 5.91 0.00 0.00 4.17
585 586 5.098218 TGGCAACAGTTACGTTATTTGAC 57.902 39.130 0.00 0.00 46.17 3.18
586 587 4.575236 TGGCAACAGTTACGTTATTTGACA 59.425 37.500 0.00 0.00 46.17 3.58
587 588 5.066117 TGGCAACAGTTACGTTATTTGACAA 59.934 36.000 0.00 0.00 46.17 3.18
588 589 5.972382 GGCAACAGTTACGTTATTTGACAAA 59.028 36.000 2.48 2.48 0.00 2.83
589 590 6.472808 GGCAACAGTTACGTTATTTGACAAAA 59.527 34.615 4.41 0.00 0.00 2.44
590 591 7.009357 GGCAACAGTTACGTTATTTGACAAAAA 59.991 33.333 4.41 0.00 0.00 1.94
631 632 8.220755 TCTAATTTAAGCAAACTTGTGTCACT 57.779 30.769 4.27 0.00 36.57 3.41
632 633 9.332502 TCTAATTTAAGCAAACTTGTGTCACTA 57.667 29.630 4.27 0.00 36.57 2.74
633 634 9.944663 CTAATTTAAGCAAACTTGTGTCACTAA 57.055 29.630 4.27 0.00 36.57 2.24
635 636 9.816354 AATTTAAGCAAACTTGTGTCACTAATT 57.184 25.926 4.27 0.00 36.57 1.40
637 638 9.944663 TTTAAGCAAACTTGTGTCACTAATTAG 57.055 29.630 11.05 11.05 36.57 1.73
638 639 6.560253 AGCAAACTTGTGTCACTAATTAGG 57.440 37.500 16.73 6.10 0.00 2.69
639 640 5.473504 AGCAAACTTGTGTCACTAATTAGGG 59.526 40.000 16.73 12.94 0.00 3.53
640 641 5.699839 CAAACTTGTGTCACTAATTAGGGC 58.300 41.667 16.73 9.36 0.00 5.19
641 642 4.634012 ACTTGTGTCACTAATTAGGGCA 57.366 40.909 16.73 11.68 0.00 5.36
642 643 5.179452 ACTTGTGTCACTAATTAGGGCAT 57.821 39.130 16.73 0.00 0.00 4.40
643 644 6.308015 ACTTGTGTCACTAATTAGGGCATA 57.692 37.500 16.73 10.17 0.00 3.14
644 645 6.900194 ACTTGTGTCACTAATTAGGGCATAT 58.100 36.000 16.73 0.00 0.00 1.78
645 646 7.346471 ACTTGTGTCACTAATTAGGGCATATT 58.654 34.615 16.73 2.38 0.00 1.28
646 647 7.499232 ACTTGTGTCACTAATTAGGGCATATTC 59.501 37.037 16.73 4.57 0.00 1.75
647 648 6.894682 TGTGTCACTAATTAGGGCATATTCA 58.105 36.000 16.73 6.73 0.00 2.57
648 649 7.342581 TGTGTCACTAATTAGGGCATATTCAA 58.657 34.615 16.73 0.00 0.00 2.69
649 650 7.998383 TGTGTCACTAATTAGGGCATATTCAAT 59.002 33.333 16.73 0.00 0.00 2.57
650 651 8.292448 GTGTCACTAATTAGGGCATATTCAATG 58.708 37.037 16.73 1.82 0.00 2.82
651 652 7.448161 TGTCACTAATTAGGGCATATTCAATGG 59.552 37.037 16.73 0.00 0.00 3.16
652 653 7.448469 GTCACTAATTAGGGCATATTCAATGGT 59.552 37.037 16.73 0.00 0.00 3.55
653 654 7.448161 TCACTAATTAGGGCATATTCAATGGTG 59.552 37.037 16.73 1.45 0.00 4.17
654 655 6.721208 ACTAATTAGGGCATATTCAATGGTGG 59.279 38.462 16.73 0.00 0.00 4.61
655 656 4.534647 TTAGGGCATATTCAATGGTGGT 57.465 40.909 0.00 0.00 0.00 4.16
656 657 2.669781 AGGGCATATTCAATGGTGGTG 58.330 47.619 0.00 0.00 0.00 4.17
657 658 1.069049 GGGCATATTCAATGGTGGTGC 59.931 52.381 0.00 0.00 0.00 5.01
658 659 2.034124 GGCATATTCAATGGTGGTGCT 58.966 47.619 0.00 0.00 0.00 4.40
659 660 3.221771 GGCATATTCAATGGTGGTGCTA 58.778 45.455 0.00 0.00 0.00 3.49
660 661 3.828451 GGCATATTCAATGGTGGTGCTAT 59.172 43.478 0.00 0.00 0.00 2.97
661 662 4.082571 GGCATATTCAATGGTGGTGCTATC 60.083 45.833 0.00 0.00 0.00 2.08
662 663 4.763793 GCATATTCAATGGTGGTGCTATCT 59.236 41.667 0.00 0.00 0.00 1.98
663 664 5.242393 GCATATTCAATGGTGGTGCTATCTT 59.758 40.000 0.00 0.00 0.00 2.40
664 665 6.430925 GCATATTCAATGGTGGTGCTATCTTA 59.569 38.462 0.00 0.00 0.00 2.10
665 666 7.361542 GCATATTCAATGGTGGTGCTATCTTAG 60.362 40.741 0.00 0.00 0.00 2.18
666 667 5.692115 TTCAATGGTGGTGCTATCTTAGA 57.308 39.130 0.00 0.00 0.00 2.10
667 668 5.282055 TCAATGGTGGTGCTATCTTAGAG 57.718 43.478 0.00 0.00 0.00 2.43
668 669 4.101585 TCAATGGTGGTGCTATCTTAGAGG 59.898 45.833 0.00 0.00 0.00 3.69
669 670 3.116096 TGGTGGTGCTATCTTAGAGGT 57.884 47.619 0.00 0.00 0.00 3.85
670 671 2.766263 TGGTGGTGCTATCTTAGAGGTG 59.234 50.000 0.00 0.00 0.00 4.00
671 672 2.483889 GGTGGTGCTATCTTAGAGGTGC 60.484 54.545 0.00 0.00 0.00 5.01
672 673 1.762957 TGGTGCTATCTTAGAGGTGCC 59.237 52.381 0.00 0.00 0.00 5.01
673 674 1.762957 GGTGCTATCTTAGAGGTGCCA 59.237 52.381 0.00 0.00 0.00 4.92
674 675 2.483889 GGTGCTATCTTAGAGGTGCCAC 60.484 54.545 0.00 0.00 0.00 5.01
675 676 2.168521 GTGCTATCTTAGAGGTGCCACA 59.831 50.000 0.00 0.00 0.00 4.17
676 677 3.041211 TGCTATCTTAGAGGTGCCACAT 58.959 45.455 0.00 0.00 0.00 3.21
677 678 3.181462 TGCTATCTTAGAGGTGCCACATG 60.181 47.826 0.00 0.00 0.00 3.21
678 679 3.805108 GCTATCTTAGAGGTGCCACATGG 60.805 52.174 0.00 0.00 38.53 3.66
679 680 1.951209 TCTTAGAGGTGCCACATGGA 58.049 50.000 0.87 0.00 37.39 3.41
680 681 2.265367 TCTTAGAGGTGCCACATGGAA 58.735 47.619 0.87 0.00 37.39 3.53
681 682 2.846206 TCTTAGAGGTGCCACATGGAAT 59.154 45.455 0.87 0.00 37.39 3.01
682 683 4.037222 TCTTAGAGGTGCCACATGGAATA 58.963 43.478 0.87 0.00 37.39 1.75
683 684 4.473196 TCTTAGAGGTGCCACATGGAATAA 59.527 41.667 0.87 0.00 37.39 1.40
684 685 3.737559 AGAGGTGCCACATGGAATAAA 57.262 42.857 0.87 0.00 37.39 1.40
685 686 4.255510 AGAGGTGCCACATGGAATAAAT 57.744 40.909 0.87 0.00 37.39 1.40
686 687 3.956199 AGAGGTGCCACATGGAATAAATG 59.044 43.478 0.87 0.00 37.39 2.32
687 688 3.701040 GAGGTGCCACATGGAATAAATGT 59.299 43.478 0.87 0.00 38.81 2.71
688 689 4.095946 AGGTGCCACATGGAATAAATGTT 58.904 39.130 0.87 0.00 36.10 2.71
689 690 4.081531 AGGTGCCACATGGAATAAATGTTG 60.082 41.667 0.87 0.00 36.10 3.33
690 691 4.081752 GGTGCCACATGGAATAAATGTTGA 60.082 41.667 0.87 0.00 36.10 3.18
691 692 5.395546 GGTGCCACATGGAATAAATGTTGAT 60.396 40.000 0.87 0.00 36.10 2.57
692 693 5.521010 GTGCCACATGGAATAAATGTTGATG 59.479 40.000 0.87 0.00 36.10 3.07
693 694 4.508861 GCCACATGGAATAAATGTTGATGC 59.491 41.667 0.87 0.00 36.10 3.91
694 695 4.741185 CCACATGGAATAAATGTTGATGCG 59.259 41.667 0.00 0.00 36.10 4.73
695 696 5.450274 CCACATGGAATAAATGTTGATGCGA 60.450 40.000 0.00 0.00 36.10 5.10
696 697 6.035217 CACATGGAATAAATGTTGATGCGAA 58.965 36.000 0.00 0.00 36.10 4.70
697 698 6.197655 CACATGGAATAAATGTTGATGCGAAG 59.802 38.462 0.00 0.00 36.10 3.79
698 699 5.247507 TGGAATAAATGTTGATGCGAAGG 57.752 39.130 0.00 0.00 0.00 3.46
699 700 4.946772 TGGAATAAATGTTGATGCGAAGGA 59.053 37.500 0.00 0.00 0.00 3.36
700 701 5.066375 TGGAATAAATGTTGATGCGAAGGAG 59.934 40.000 0.00 0.00 0.00 3.69
701 702 5.296780 GGAATAAATGTTGATGCGAAGGAGA 59.703 40.000 0.00 0.00 0.00 3.71
702 703 5.998454 ATAAATGTTGATGCGAAGGAGAG 57.002 39.130 0.00 0.00 0.00 3.20
703 704 3.616956 AATGTTGATGCGAAGGAGAGA 57.383 42.857 0.00 0.00 0.00 3.10
704 705 2.662006 TGTTGATGCGAAGGAGAGAG 57.338 50.000 0.00 0.00 0.00 3.20
705 706 1.895798 TGTTGATGCGAAGGAGAGAGT 59.104 47.619 0.00 0.00 0.00 3.24
706 707 3.089284 TGTTGATGCGAAGGAGAGAGTA 58.911 45.455 0.00 0.00 0.00 2.59
707 708 3.129462 TGTTGATGCGAAGGAGAGAGTAG 59.871 47.826 0.00 0.00 0.00 2.57
708 709 1.678627 TGATGCGAAGGAGAGAGTAGC 59.321 52.381 0.00 0.00 0.00 3.58
709 710 1.678627 GATGCGAAGGAGAGAGTAGCA 59.321 52.381 0.00 0.00 37.54 3.49
710 711 1.769026 TGCGAAGGAGAGAGTAGCAT 58.231 50.000 0.00 0.00 0.00 3.79
711 712 2.932261 TGCGAAGGAGAGAGTAGCATA 58.068 47.619 0.00 0.00 0.00 3.14
712 713 3.288092 TGCGAAGGAGAGAGTAGCATAA 58.712 45.455 0.00 0.00 0.00 1.90
713 714 3.891977 TGCGAAGGAGAGAGTAGCATAAT 59.108 43.478 0.00 0.00 0.00 1.28
714 715 5.070685 TGCGAAGGAGAGAGTAGCATAATA 58.929 41.667 0.00 0.00 0.00 0.98
715 716 5.712446 TGCGAAGGAGAGAGTAGCATAATAT 59.288 40.000 0.00 0.00 0.00 1.28
716 717 6.884836 TGCGAAGGAGAGAGTAGCATAATATA 59.115 38.462 0.00 0.00 0.00 0.86
717 718 7.558081 TGCGAAGGAGAGAGTAGCATAATATAT 59.442 37.037 0.00 0.00 0.00 0.86
718 719 8.073768 GCGAAGGAGAGAGTAGCATAATATATC 58.926 40.741 0.00 0.00 0.00 1.63
719 720 9.337396 CGAAGGAGAGAGTAGCATAATATATCT 57.663 37.037 0.00 0.00 0.00 1.98
767 768 9.817809 TGATCTCTTAACACAATATGTCTTACC 57.182 33.333 0.00 0.00 42.31 2.85
768 769 9.817809 GATCTCTTAACACAATATGTCTTACCA 57.182 33.333 0.00 0.00 42.31 3.25
769 770 8.997621 TCTCTTAACACAATATGTCTTACCAC 57.002 34.615 0.00 0.00 42.31 4.16
770 771 7.758076 TCTCTTAACACAATATGTCTTACCACG 59.242 37.037 0.00 0.00 42.31 4.94
771 772 7.380536 TCTTAACACAATATGTCTTACCACGT 58.619 34.615 0.00 0.00 42.31 4.49
772 773 7.874016 TCTTAACACAATATGTCTTACCACGTT 59.126 33.333 0.00 0.00 42.31 3.99
773 774 6.870971 AACACAATATGTCTTACCACGTTT 57.129 33.333 0.00 0.00 42.31 3.60
774 775 6.870971 ACACAATATGTCTTACCACGTTTT 57.129 33.333 0.00 0.00 36.54 2.43
775 776 7.266922 ACACAATATGTCTTACCACGTTTTT 57.733 32.000 0.00 0.00 36.54 1.94
776 777 8.380743 ACACAATATGTCTTACCACGTTTTTA 57.619 30.769 0.00 0.00 36.54 1.52
777 778 8.500773 ACACAATATGTCTTACCACGTTTTTAG 58.499 33.333 0.00 0.00 36.54 1.85
778 779 7.960738 CACAATATGTCTTACCACGTTTTTAGG 59.039 37.037 0.00 0.00 0.00 2.69
779 780 7.879160 ACAATATGTCTTACCACGTTTTTAGGA 59.121 33.333 0.00 0.00 0.00 2.94
780 781 8.723311 CAATATGTCTTACCACGTTTTTAGGAA 58.277 33.333 0.00 0.00 0.00 3.36
781 782 9.457436 AATATGTCTTACCACGTTTTTAGGAAT 57.543 29.630 0.00 0.00 0.00 3.01
783 784 8.851541 ATGTCTTACCACGTTTTTAGGAATAA 57.148 30.769 0.00 0.00 0.00 1.40
784 785 8.086851 TGTCTTACCACGTTTTTAGGAATAAC 57.913 34.615 0.00 0.00 0.00 1.89
785 786 7.933033 TGTCTTACCACGTTTTTAGGAATAACT 59.067 33.333 0.00 0.00 0.00 2.24
786 787 9.423061 GTCTTACCACGTTTTTAGGAATAACTA 57.577 33.333 0.00 0.00 0.00 2.24
787 788 9.643693 TCTTACCACGTTTTTAGGAATAACTAG 57.356 33.333 0.00 0.00 0.00 2.57
788 789 9.428097 CTTACCACGTTTTTAGGAATAACTAGT 57.572 33.333 0.00 0.00 0.00 2.57
985 988 3.941188 CAGACCACCCCACGCACT 61.941 66.667 0.00 0.00 0.00 4.40
3018 4895 7.201705 GGCTTAGGATGTATTGTAGTTGGTTTC 60.202 40.741 0.00 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 174 1.999071 CTCGTCTGAGAAGGCGGAGG 61.999 65.000 0.00 0.00 45.57 4.30
174 175 1.431440 CTCGTCTGAGAAGGCGGAG 59.569 63.158 0.00 0.00 45.57 4.63
175 176 3.592070 CTCGTCTGAGAAGGCGGA 58.408 61.111 0.00 0.00 45.57 5.54
183 184 0.388649 CGTTGGGGTTCTCGTCTGAG 60.389 60.000 0.00 0.00 43.99 3.35
184 185 1.663739 CGTTGGGGTTCTCGTCTGA 59.336 57.895 0.00 0.00 0.00 3.27
185 186 2.027625 GCGTTGGGGTTCTCGTCTG 61.028 63.158 0.00 0.00 0.00 3.51
186 187 2.207924 AGCGTTGGGGTTCTCGTCT 61.208 57.895 0.00 0.00 0.00 4.18
187 188 2.027625 CAGCGTTGGGGTTCTCGTC 61.028 63.158 0.00 0.00 0.00 4.20
188 189 2.030562 CAGCGTTGGGGTTCTCGT 59.969 61.111 0.00 0.00 0.00 4.18
189 190 3.423154 GCAGCGTTGGGGTTCTCG 61.423 66.667 0.16 0.00 0.00 4.04
190 191 1.675641 ATGCAGCGTTGGGGTTCTC 60.676 57.895 0.16 0.00 0.00 2.87
191 192 1.973281 CATGCAGCGTTGGGGTTCT 60.973 57.895 0.16 0.00 0.00 3.01
192 193 2.568090 CATGCAGCGTTGGGGTTC 59.432 61.111 0.16 0.00 0.00 3.62
193 194 3.683937 GCATGCAGCGTTGGGGTT 61.684 61.111 14.21 0.00 0.00 4.11
202 203 4.899687 CATGACGGCGCATGCAGC 62.900 66.667 23.72 20.53 45.35 5.25
207 208 1.588932 CGACTACATGACGGCGCAT 60.589 57.895 10.83 9.04 0.00 4.73
208 209 2.202557 CGACTACATGACGGCGCA 60.203 61.111 10.83 6.65 0.00 6.09
209 210 2.954868 CCGACTACATGACGGCGC 60.955 66.667 6.90 0.00 45.52 6.53
213 214 0.861866 CGAGCACCGACTACATGACG 60.862 60.000 0.00 0.00 41.76 4.35
214 215 0.170561 ACGAGCACCGACTACATGAC 59.829 55.000 0.00 0.00 41.76 3.06
215 216 0.170339 CACGAGCACCGACTACATGA 59.830 55.000 0.00 0.00 41.76 3.07
216 217 1.413767 GCACGAGCACCGACTACATG 61.414 60.000 0.00 0.00 41.76 3.21
217 218 1.153823 GCACGAGCACCGACTACAT 60.154 57.895 0.00 0.00 41.76 2.29
218 219 2.257371 GCACGAGCACCGACTACA 59.743 61.111 0.00 0.00 41.76 2.74
219 220 2.244436 TACGCACGAGCACCGACTAC 62.244 60.000 5.50 0.00 42.27 2.73
220 221 1.974249 CTACGCACGAGCACCGACTA 61.974 60.000 5.50 0.00 42.27 2.59
221 222 3.324099 CTACGCACGAGCACCGACT 62.324 63.158 5.50 0.00 42.27 4.18
222 223 2.874780 CTACGCACGAGCACCGAC 60.875 66.667 5.50 0.00 42.27 4.79
223 224 4.771356 GCTACGCACGAGCACCGA 62.771 66.667 5.50 0.00 42.27 4.69
225 226 4.735132 TGGCTACGCACGAGCACC 62.735 66.667 5.50 1.07 41.98 5.01
226 227 2.509336 ATGGCTACGCACGAGCAC 60.509 61.111 5.50 6.48 41.98 4.40
227 228 2.202743 GATGGCTACGCACGAGCA 60.203 61.111 5.50 0.00 41.98 4.26
228 229 2.907897 AAGGATGGCTACGCACGAGC 62.908 60.000 0.00 0.00 39.33 5.03
229 230 0.460284 AAAGGATGGCTACGCACGAG 60.460 55.000 0.00 0.00 0.00 4.18
230 231 0.818938 TAAAGGATGGCTACGCACGA 59.181 50.000 0.00 0.00 0.00 4.35
231 232 1.209128 CTAAAGGATGGCTACGCACG 58.791 55.000 0.00 0.00 0.00 5.34
232 233 0.938008 GCTAAAGGATGGCTACGCAC 59.062 55.000 0.00 0.00 0.00 5.34
233 234 0.179056 GGCTAAAGGATGGCTACGCA 60.179 55.000 0.00 0.00 0.00 5.24
234 235 0.179056 TGGCTAAAGGATGGCTACGC 60.179 55.000 0.00 0.00 0.00 4.42
235 236 1.541233 CCTGGCTAAAGGATGGCTACG 60.541 57.143 0.00 0.00 40.02 3.51
236 237 1.815795 GCCTGGCTAAAGGATGGCTAC 60.816 57.143 12.43 0.00 40.02 3.58
237 238 0.474184 GCCTGGCTAAAGGATGGCTA 59.526 55.000 12.43 0.00 40.02 3.93
238 239 1.228510 GCCTGGCTAAAGGATGGCT 59.771 57.895 12.43 0.00 40.02 4.75
239 240 1.829970 GGCCTGGCTAAAGGATGGC 60.830 63.158 19.68 0.00 40.02 4.40
240 241 0.259938 AAGGCCTGGCTAAAGGATGG 59.740 55.000 19.68 0.00 40.02 3.51
241 242 1.685148 GAAGGCCTGGCTAAAGGATG 58.315 55.000 19.68 0.00 40.02 3.51
242 243 0.553333 GGAAGGCCTGGCTAAAGGAT 59.447 55.000 19.68 0.00 40.02 3.24
243 244 0.550147 AGGAAGGCCTGGCTAAAGGA 60.550 55.000 19.68 0.00 44.90 3.36
244 245 0.332972 AAGGAAGGCCTGGCTAAAGG 59.667 55.000 19.68 0.00 46.28 3.11
245 246 1.756430 GAAGGAAGGCCTGGCTAAAG 58.244 55.000 19.68 0.00 46.28 1.85
246 247 0.035439 CGAAGGAAGGCCTGGCTAAA 60.035 55.000 19.68 0.00 46.28 1.85
247 248 1.602237 CGAAGGAAGGCCTGGCTAA 59.398 57.895 19.68 0.00 46.28 3.09
248 249 3.309582 CGAAGGAAGGCCTGGCTA 58.690 61.111 19.68 0.00 46.28 3.93
261 262 3.130693 ACCTACTACAAGCTTAGCCGAAG 59.869 47.826 0.00 0.00 38.30 3.79
262 263 3.094572 ACCTACTACAAGCTTAGCCGAA 58.905 45.455 0.00 0.00 0.00 4.30
263 264 2.686915 GACCTACTACAAGCTTAGCCGA 59.313 50.000 0.00 0.00 0.00 5.54
264 265 2.223758 GGACCTACTACAAGCTTAGCCG 60.224 54.545 0.00 0.00 0.00 5.52
265 266 2.223758 CGGACCTACTACAAGCTTAGCC 60.224 54.545 0.00 0.00 0.00 3.93
266 267 2.426381 ACGGACCTACTACAAGCTTAGC 59.574 50.000 0.00 0.00 0.00 3.09
267 268 3.442977 ACACGGACCTACTACAAGCTTAG 59.557 47.826 0.00 0.00 0.00 2.18
268 269 3.424703 ACACGGACCTACTACAAGCTTA 58.575 45.455 0.00 0.00 0.00 3.09
269 270 2.245582 ACACGGACCTACTACAAGCTT 58.754 47.619 0.00 0.00 0.00 3.74
270 271 1.920610 ACACGGACCTACTACAAGCT 58.079 50.000 0.00 0.00 0.00 3.74
271 272 3.855689 TTACACGGACCTACTACAAGC 57.144 47.619 0.00 0.00 0.00 4.01
272 273 7.360607 CCAAAAATTACACGGACCTACTACAAG 60.361 40.741 0.00 0.00 0.00 3.16
273 274 6.427547 CCAAAAATTACACGGACCTACTACAA 59.572 38.462 0.00 0.00 0.00 2.41
274 275 5.933463 CCAAAAATTACACGGACCTACTACA 59.067 40.000 0.00 0.00 0.00 2.74
275 276 6.165577 TCCAAAAATTACACGGACCTACTAC 58.834 40.000 0.00 0.00 0.00 2.73
276 277 6.357579 TCCAAAAATTACACGGACCTACTA 57.642 37.500 0.00 0.00 0.00 1.82
277 278 5.231702 TCCAAAAATTACACGGACCTACT 57.768 39.130 0.00 0.00 0.00 2.57
278 279 4.393990 CCTCCAAAAATTACACGGACCTAC 59.606 45.833 0.00 0.00 0.00 3.18
279 280 4.041938 ACCTCCAAAAATTACACGGACCTA 59.958 41.667 0.00 0.00 0.00 3.08
280 281 3.181437 ACCTCCAAAAATTACACGGACCT 60.181 43.478 0.00 0.00 0.00 3.85
281 282 3.151554 ACCTCCAAAAATTACACGGACC 58.848 45.455 0.00 0.00 0.00 4.46
282 283 3.120442 CGACCTCCAAAAATTACACGGAC 60.120 47.826 0.00 0.00 0.00 4.79
283 284 3.068560 CGACCTCCAAAAATTACACGGA 58.931 45.455 0.00 0.00 0.00 4.69
284 285 2.809696 ACGACCTCCAAAAATTACACGG 59.190 45.455 0.00 0.00 0.00 4.94
285 286 3.744426 AGACGACCTCCAAAAATTACACG 59.256 43.478 0.00 0.00 0.00 4.49
286 287 4.514066 ACAGACGACCTCCAAAAATTACAC 59.486 41.667 0.00 0.00 0.00 2.90
287 288 4.710324 ACAGACGACCTCCAAAAATTACA 58.290 39.130 0.00 0.00 0.00 2.41
288 289 6.980051 ATACAGACGACCTCCAAAAATTAC 57.020 37.500 0.00 0.00 0.00 1.89
289 290 9.675464 AATTATACAGACGACCTCCAAAAATTA 57.325 29.630 0.00 0.00 0.00 1.40
290 291 8.575649 AATTATACAGACGACCTCCAAAAATT 57.424 30.769 0.00 0.00 0.00 1.82
291 292 9.847224 ATAATTATACAGACGACCTCCAAAAAT 57.153 29.630 0.00 0.00 0.00 1.82
292 293 9.675464 AATAATTATACAGACGACCTCCAAAAA 57.325 29.630 0.00 0.00 0.00 1.94
293 294 9.675464 AAATAATTATACAGACGACCTCCAAAA 57.325 29.630 0.00 0.00 0.00 2.44
294 295 9.675464 AAAATAATTATACAGACGACCTCCAAA 57.325 29.630 0.00 0.00 0.00 3.28
295 296 9.104965 CAAAATAATTATACAGACGACCTCCAA 57.895 33.333 0.00 0.00 0.00 3.53
296 297 7.225931 GCAAAATAATTATACAGACGACCTCCA 59.774 37.037 0.00 0.00 0.00 3.86
297 298 7.225931 TGCAAAATAATTATACAGACGACCTCC 59.774 37.037 0.00 0.00 0.00 4.30
298 299 8.062448 GTGCAAAATAATTATACAGACGACCTC 58.938 37.037 0.00 0.00 0.00 3.85
299 300 7.254319 CGTGCAAAATAATTATACAGACGACCT 60.254 37.037 0.00 0.00 0.00 3.85
300 301 6.844279 CGTGCAAAATAATTATACAGACGACC 59.156 38.462 0.00 0.00 0.00 4.79
301 302 7.396419 ACGTGCAAAATAATTATACAGACGAC 58.604 34.615 17.07 0.00 0.00 4.34
302 303 7.528481 ACGTGCAAAATAATTATACAGACGA 57.472 32.000 17.07 0.00 0.00 4.20
303 304 7.690637 ACAACGTGCAAAATAATTATACAGACG 59.309 33.333 0.00 6.85 0.00 4.18
304 305 8.889849 ACAACGTGCAAAATAATTATACAGAC 57.110 30.769 0.00 0.00 0.00 3.51
305 306 9.976255 GTACAACGTGCAAAATAATTATACAGA 57.024 29.630 0.00 0.00 0.00 3.41
306 307 9.982291 AGTACAACGTGCAAAATAATTATACAG 57.018 29.630 0.00 0.00 0.00 2.74
307 308 9.976255 GAGTACAACGTGCAAAATAATTATACA 57.024 29.630 0.00 0.00 0.00 2.29
308 309 9.976255 TGAGTACAACGTGCAAAATAATTATAC 57.024 29.630 0.00 0.00 0.00 1.47
310 311 9.337091 GTTGAGTACAACGTGCAAAATAATTAT 57.663 29.630 0.00 0.00 45.06 1.28
311 312 8.716619 GTTGAGTACAACGTGCAAAATAATTA 57.283 30.769 0.00 0.00 45.06 1.40
312 313 7.617533 GTTGAGTACAACGTGCAAAATAATT 57.382 32.000 0.00 0.00 45.06 1.40
323 324 7.817593 TCACTTTGTGGGTTGAGTACAACGT 62.818 44.000 0.00 0.00 43.04 3.99
324 325 5.448459 TCACTTTGTGGGTTGAGTACAACG 61.448 45.833 0.00 0.00 43.04 4.10
325 326 3.942748 TCACTTTGTGGGTTGAGTACAAC 59.057 43.478 0.00 0.00 42.31 3.32
326 327 4.223556 TCACTTTGTGGGTTGAGTACAA 57.776 40.909 0.00 0.00 33.87 2.41
327 328 3.916359 TCACTTTGTGGGTTGAGTACA 57.084 42.857 0.00 0.00 33.87 2.90
328 329 5.767816 ATTTCACTTTGTGGGTTGAGTAC 57.232 39.130 0.00 0.00 33.87 2.73
329 330 5.654650 ACAATTTCACTTTGTGGGTTGAGTA 59.345 36.000 13.15 0.00 36.02 2.59
330 331 4.466015 ACAATTTCACTTTGTGGGTTGAGT 59.534 37.500 13.15 0.00 36.02 3.41
331 332 5.009854 ACAATTTCACTTTGTGGGTTGAG 57.990 39.130 13.15 0.00 36.02 3.02
332 333 6.531503 TTACAATTTCACTTTGTGGGTTGA 57.468 33.333 13.15 0.00 37.81 3.18
333 334 7.784633 ATTTACAATTTCACTTTGTGGGTTG 57.215 32.000 0.00 4.21 37.81 3.77
358 359 9.874205 ACGTAAAGGCAATAAACAAGTACTATA 57.126 29.630 0.00 0.00 0.00 1.31
359 360 8.782339 ACGTAAAGGCAATAAACAAGTACTAT 57.218 30.769 0.00 0.00 0.00 2.12
360 361 9.357652 CTACGTAAAGGCAATAAACAAGTACTA 57.642 33.333 0.00 0.00 0.00 1.82
361 362 7.148523 GCTACGTAAAGGCAATAAACAAGTACT 60.149 37.037 0.00 0.00 0.00 2.73
362 363 6.957635 GCTACGTAAAGGCAATAAACAAGTAC 59.042 38.462 0.00 0.00 0.00 2.73
363 364 6.875195 AGCTACGTAAAGGCAATAAACAAGTA 59.125 34.615 7.88 0.00 0.00 2.24
364 365 5.704053 AGCTACGTAAAGGCAATAAACAAGT 59.296 36.000 7.88 0.00 0.00 3.16
365 366 6.178239 AGCTACGTAAAGGCAATAAACAAG 57.822 37.500 7.88 0.00 0.00 3.16
366 367 6.875195 ACTAGCTACGTAAAGGCAATAAACAA 59.125 34.615 7.88 0.00 0.00 2.83
367 368 6.400568 ACTAGCTACGTAAAGGCAATAAACA 58.599 36.000 7.88 0.00 0.00 2.83
368 369 6.898912 ACTAGCTACGTAAAGGCAATAAAC 57.101 37.500 7.88 0.00 0.00 2.01
369 370 7.775120 ACTACTAGCTACGTAAAGGCAATAAA 58.225 34.615 7.88 0.00 0.00 1.40
370 371 7.338800 ACTACTAGCTACGTAAAGGCAATAA 57.661 36.000 7.88 0.00 0.00 1.40
371 372 6.949352 ACTACTAGCTACGTAAAGGCAATA 57.051 37.500 7.88 0.00 0.00 1.90
372 373 5.848833 ACTACTAGCTACGTAAAGGCAAT 57.151 39.130 7.88 0.00 0.00 3.56
373 374 5.649782 AACTACTAGCTACGTAAAGGCAA 57.350 39.130 7.88 0.00 0.00 4.52
374 375 6.369059 CTAACTACTAGCTACGTAAAGGCA 57.631 41.667 7.88 0.00 0.00 4.75
388 389 9.903682 CAAACTACTGTAACAAGCTAACTACTA 57.096 33.333 0.00 0.00 0.00 1.82
389 390 8.419442 ACAAACTACTGTAACAAGCTAACTACT 58.581 33.333 0.00 0.00 0.00 2.57
390 391 8.485591 CACAAACTACTGTAACAAGCTAACTAC 58.514 37.037 0.00 0.00 0.00 2.73
391 392 8.415553 TCACAAACTACTGTAACAAGCTAACTA 58.584 33.333 0.00 0.00 0.00 2.24
392 393 7.270047 TCACAAACTACTGTAACAAGCTAACT 58.730 34.615 0.00 0.00 0.00 2.24
393 394 7.473027 TCACAAACTACTGTAACAAGCTAAC 57.527 36.000 0.00 0.00 0.00 2.34
394 395 8.671384 AATCACAAACTACTGTAACAAGCTAA 57.329 30.769 0.00 0.00 0.00 3.09
395 396 8.671384 AAATCACAAACTACTGTAACAAGCTA 57.329 30.769 0.00 0.00 0.00 3.32
396 397 7.568199 AAATCACAAACTACTGTAACAAGCT 57.432 32.000 0.00 0.00 0.00 3.74
397 398 7.913297 TCAAAATCACAAACTACTGTAACAAGC 59.087 33.333 0.00 0.00 0.00 4.01
398 399 9.781834 TTCAAAATCACAAACTACTGTAACAAG 57.218 29.630 0.00 0.00 0.00 3.16
399 400 9.562583 GTTCAAAATCACAAACTACTGTAACAA 57.437 29.630 0.00 0.00 0.00 2.83
400 401 8.185505 GGTTCAAAATCACAAACTACTGTAACA 58.814 33.333 0.00 0.00 0.00 2.41
401 402 8.185505 TGGTTCAAAATCACAAACTACTGTAAC 58.814 33.333 0.00 0.00 0.00 2.50
402 403 8.282455 TGGTTCAAAATCACAAACTACTGTAA 57.718 30.769 0.00 0.00 0.00 2.41
403 404 7.012894 CCTGGTTCAAAATCACAAACTACTGTA 59.987 37.037 0.00 0.00 0.00 2.74
404 405 6.183360 CCTGGTTCAAAATCACAAACTACTGT 60.183 38.462 0.00 0.00 0.00 3.55
405 406 6.208644 CCTGGTTCAAAATCACAAACTACTG 58.791 40.000 0.00 0.00 0.00 2.74
406 407 5.301805 CCCTGGTTCAAAATCACAAACTACT 59.698 40.000 0.00 0.00 0.00 2.57
407 408 5.508994 CCCCTGGTTCAAAATCACAAACTAC 60.509 44.000 0.00 0.00 0.00 2.73
408 409 4.586841 CCCCTGGTTCAAAATCACAAACTA 59.413 41.667 0.00 0.00 0.00 2.24
409 410 3.387699 CCCCTGGTTCAAAATCACAAACT 59.612 43.478 0.00 0.00 0.00 2.66
410 411 3.386402 TCCCCTGGTTCAAAATCACAAAC 59.614 43.478 0.00 0.00 0.00 2.93
411 412 3.647636 TCCCCTGGTTCAAAATCACAAA 58.352 40.909 0.00 0.00 0.00 2.83
412 413 3.320610 TCCCCTGGTTCAAAATCACAA 57.679 42.857 0.00 0.00 0.00 3.33
413 414 3.541242 ATCCCCTGGTTCAAAATCACA 57.459 42.857 0.00 0.00 0.00 3.58
414 415 3.831911 TGAATCCCCTGGTTCAAAATCAC 59.168 43.478 0.00 0.00 31.85 3.06
415 416 4.088634 CTGAATCCCCTGGTTCAAAATCA 58.911 43.478 0.00 0.00 34.26 2.57
416 417 4.089361 ACTGAATCCCCTGGTTCAAAATC 58.911 43.478 0.00 0.00 34.26 2.17
417 418 4.132122 ACTGAATCCCCTGGTTCAAAAT 57.868 40.909 0.00 0.00 34.26 1.82
418 419 3.611025 ACTGAATCCCCTGGTTCAAAA 57.389 42.857 0.00 0.00 34.26 2.44
419 420 3.496331 GAACTGAATCCCCTGGTTCAAA 58.504 45.455 0.00 0.00 37.03 2.69
420 421 2.225017 GGAACTGAATCCCCTGGTTCAA 60.225 50.000 0.00 0.00 38.27 2.69
421 422 1.354368 GGAACTGAATCCCCTGGTTCA 59.646 52.381 0.00 0.00 38.27 3.18
422 423 1.636003 AGGAACTGAATCCCCTGGTTC 59.364 52.381 0.00 0.00 40.59 3.62
423 424 1.760405 AGGAACTGAATCCCCTGGTT 58.240 50.000 0.00 0.00 40.59 3.67
424 425 1.355720 CAAGGAACTGAATCCCCTGGT 59.644 52.381 0.00 0.00 40.86 4.00
425 426 1.355720 ACAAGGAACTGAATCCCCTGG 59.644 52.381 0.00 0.00 40.86 4.45
426 427 2.887151 ACAAGGAACTGAATCCCCTG 57.113 50.000 0.00 0.00 40.86 4.45
427 428 3.903530 AAACAAGGAACTGAATCCCCT 57.096 42.857 1.58 0.00 40.86 4.79
428 429 4.459337 CACTAAACAAGGAACTGAATCCCC 59.541 45.833 1.58 0.00 40.86 4.81
429 430 5.070685 ACACTAAACAAGGAACTGAATCCC 58.929 41.667 1.58 0.00 40.86 3.85
430 431 7.660208 TCTTACACTAAACAAGGAACTGAATCC 59.340 37.037 0.00 0.00 40.86 3.01
431 432 8.603242 TCTTACACTAAACAAGGAACTGAATC 57.397 34.615 0.00 0.00 40.86 2.52
433 434 9.485206 GTATCTTACACTAAACAAGGAACTGAA 57.515 33.333 0.00 0.00 40.86 3.02
434 435 8.867097 AGTATCTTACACTAAACAAGGAACTGA 58.133 33.333 0.00 0.00 40.86 3.41
523 524 9.588096 AAAGGTAAGAAATGGAATTGTAACTCT 57.412 29.630 0.00 0.00 36.10 3.24
539 540 9.733219 CCACAAACGTTAAAATAAAGGTAAGAA 57.267 29.630 0.00 0.00 0.00 2.52
540 541 7.861872 GCCACAAACGTTAAAATAAAGGTAAGA 59.138 33.333 0.00 0.00 0.00 2.10
541 542 7.648510 TGCCACAAACGTTAAAATAAAGGTAAG 59.351 33.333 0.00 0.00 0.00 2.34
542 543 7.486647 TGCCACAAACGTTAAAATAAAGGTAA 58.513 30.769 0.00 0.00 0.00 2.85
543 544 7.035840 TGCCACAAACGTTAAAATAAAGGTA 57.964 32.000 0.00 0.00 0.00 3.08
544 545 5.903810 TGCCACAAACGTTAAAATAAAGGT 58.096 33.333 0.00 0.00 0.00 3.50
545 546 6.255887 TGTTGCCACAAACGTTAAAATAAAGG 59.744 34.615 0.00 0.00 32.47 3.11
546 547 7.009723 ACTGTTGCCACAAACGTTAAAATAAAG 59.990 33.333 0.00 0.00 32.47 1.85
547 548 6.812160 ACTGTTGCCACAAACGTTAAAATAAA 59.188 30.769 0.00 0.00 32.47 1.40
548 549 6.331061 ACTGTTGCCACAAACGTTAAAATAA 58.669 32.000 0.00 0.00 32.47 1.40
549 550 5.892568 ACTGTTGCCACAAACGTTAAAATA 58.107 33.333 0.00 0.00 32.47 1.40
550 551 4.749976 ACTGTTGCCACAAACGTTAAAAT 58.250 34.783 0.00 0.00 32.47 1.82
551 552 4.175787 ACTGTTGCCACAAACGTTAAAA 57.824 36.364 0.00 0.00 32.47 1.52
552 553 3.851976 ACTGTTGCCACAAACGTTAAA 57.148 38.095 0.00 0.00 32.47 1.52
553 554 3.851976 AACTGTTGCCACAAACGTTAA 57.148 38.095 0.00 0.00 32.47 2.01
554 555 3.242349 CGTAACTGTTGCCACAAACGTTA 60.242 43.478 0.00 5.11 32.73 3.18
555 556 2.476519 CGTAACTGTTGCCACAAACGTT 60.477 45.455 2.69 0.00 32.73 3.99
556 557 1.062880 CGTAACTGTTGCCACAAACGT 59.937 47.619 2.69 0.00 32.73 3.99
557 558 1.062880 ACGTAACTGTTGCCACAAACG 59.937 47.619 14.60 14.60 38.57 3.60
558 559 2.836479 ACGTAACTGTTGCCACAAAC 57.164 45.000 2.69 0.00 30.36 2.93
559 560 5.502153 AATAACGTAACTGTTGCCACAAA 57.498 34.783 2.69 0.00 33.32 2.83
560 561 5.066117 TCAAATAACGTAACTGTTGCCACAA 59.934 36.000 2.69 0.00 33.32 3.33
561 562 4.575236 TCAAATAACGTAACTGTTGCCACA 59.425 37.500 2.69 0.00 33.32 4.17
562 563 4.907582 GTCAAATAACGTAACTGTTGCCAC 59.092 41.667 2.69 0.00 33.32 5.01
563 564 4.575236 TGTCAAATAACGTAACTGTTGCCA 59.425 37.500 2.69 0.00 33.32 4.92
564 565 5.098218 TGTCAAATAACGTAACTGTTGCC 57.902 39.130 2.69 0.00 33.32 4.52
565 566 7.439204 TTTTGTCAAATAACGTAACTGTTGC 57.561 32.000 2.69 0.20 33.32 4.17
605 606 8.850156 AGTGACACAAGTTTGCTTAAATTAGAT 58.150 29.630 8.59 0.00 32.87 1.98
606 607 8.220755 AGTGACACAAGTTTGCTTAAATTAGA 57.779 30.769 8.59 0.00 32.87 2.10
607 608 9.944663 TTAGTGACACAAGTTTGCTTAAATTAG 57.055 29.630 8.59 0.00 32.87 1.73
609 610 9.816354 AATTAGTGACACAAGTTTGCTTAAATT 57.184 25.926 8.59 0.00 32.87 1.82
611 612 9.944663 CTAATTAGTGACACAAGTTTGCTTAAA 57.055 29.630 8.59 0.00 32.87 1.52
612 613 8.564574 CCTAATTAGTGACACAAGTTTGCTTAA 58.435 33.333 11.50 0.00 32.87 1.85
613 614 7.174253 CCCTAATTAGTGACACAAGTTTGCTTA 59.826 37.037 11.50 0.00 32.87 3.09
614 615 6.016276 CCCTAATTAGTGACACAAGTTTGCTT 60.016 38.462 11.50 0.00 34.82 3.91
615 616 5.473504 CCCTAATTAGTGACACAAGTTTGCT 59.526 40.000 11.50 0.00 0.00 3.91
616 617 5.699839 CCCTAATTAGTGACACAAGTTTGC 58.300 41.667 11.50 0.00 0.00 3.68
617 618 5.240623 TGCCCTAATTAGTGACACAAGTTTG 59.759 40.000 11.50 0.69 0.00 2.93
618 619 5.381757 TGCCCTAATTAGTGACACAAGTTT 58.618 37.500 11.50 0.00 0.00 2.66
619 620 4.980573 TGCCCTAATTAGTGACACAAGTT 58.019 39.130 11.50 1.81 0.00 2.66
620 621 4.634012 TGCCCTAATTAGTGACACAAGT 57.366 40.909 11.50 2.55 0.00 3.16
621 622 7.498900 TGAATATGCCCTAATTAGTGACACAAG 59.501 37.037 11.50 0.00 0.00 3.16
622 623 7.342581 TGAATATGCCCTAATTAGTGACACAA 58.657 34.615 11.50 0.77 0.00 3.33
623 624 6.894682 TGAATATGCCCTAATTAGTGACACA 58.105 36.000 11.50 2.85 0.00 3.72
624 625 7.801716 TTGAATATGCCCTAATTAGTGACAC 57.198 36.000 11.50 0.00 0.00 3.67
625 626 7.448161 CCATTGAATATGCCCTAATTAGTGACA 59.552 37.037 11.50 6.74 0.00 3.58
626 627 7.448469 ACCATTGAATATGCCCTAATTAGTGAC 59.552 37.037 11.50 1.35 0.00 3.67
627 628 7.448161 CACCATTGAATATGCCCTAATTAGTGA 59.552 37.037 11.50 0.00 0.00 3.41
628 629 7.309377 CCACCATTGAATATGCCCTAATTAGTG 60.309 40.741 11.50 0.95 0.00 2.74
629 630 6.721208 CCACCATTGAATATGCCCTAATTAGT 59.279 38.462 11.50 0.00 0.00 2.24
630 631 6.721208 ACCACCATTGAATATGCCCTAATTAG 59.279 38.462 5.43 5.43 0.00 1.73
631 632 6.493115 CACCACCATTGAATATGCCCTAATTA 59.507 38.462 0.00 0.00 0.00 1.40
632 633 5.305128 CACCACCATTGAATATGCCCTAATT 59.695 40.000 0.00 0.00 0.00 1.40
633 634 4.834496 CACCACCATTGAATATGCCCTAAT 59.166 41.667 0.00 0.00 0.00 1.73
634 635 4.214310 CACCACCATTGAATATGCCCTAA 58.786 43.478 0.00 0.00 0.00 2.69
635 636 3.831323 CACCACCATTGAATATGCCCTA 58.169 45.455 0.00 0.00 0.00 3.53
636 637 2.669781 CACCACCATTGAATATGCCCT 58.330 47.619 0.00 0.00 0.00 5.19
637 638 1.069049 GCACCACCATTGAATATGCCC 59.931 52.381 0.00 0.00 0.00 5.36
638 639 2.034124 AGCACCACCATTGAATATGCC 58.966 47.619 0.00 0.00 31.94 4.40
639 640 4.763793 AGATAGCACCACCATTGAATATGC 59.236 41.667 0.00 0.00 0.00 3.14
640 641 6.889301 AAGATAGCACCACCATTGAATATG 57.111 37.500 0.00 0.00 0.00 1.78
641 642 7.977818 TCTAAGATAGCACCACCATTGAATAT 58.022 34.615 0.00 0.00 0.00 1.28
642 643 7.373617 TCTAAGATAGCACCACCATTGAATA 57.626 36.000 0.00 0.00 0.00 1.75
643 644 6.252599 TCTAAGATAGCACCACCATTGAAT 57.747 37.500 0.00 0.00 0.00 2.57
644 645 5.396772 CCTCTAAGATAGCACCACCATTGAA 60.397 44.000 0.00 0.00 0.00 2.69
645 646 4.101585 CCTCTAAGATAGCACCACCATTGA 59.898 45.833 0.00 0.00 0.00 2.57
646 647 4.141620 ACCTCTAAGATAGCACCACCATTG 60.142 45.833 0.00 0.00 0.00 2.82
647 648 4.040755 ACCTCTAAGATAGCACCACCATT 58.959 43.478 0.00 0.00 0.00 3.16
648 649 3.389329 CACCTCTAAGATAGCACCACCAT 59.611 47.826 0.00 0.00 0.00 3.55
649 650 2.766263 CACCTCTAAGATAGCACCACCA 59.234 50.000 0.00 0.00 0.00 4.17
650 651 2.483889 GCACCTCTAAGATAGCACCACC 60.484 54.545 0.00 0.00 0.00 4.61
651 652 2.483889 GGCACCTCTAAGATAGCACCAC 60.484 54.545 0.00 0.00 0.00 4.16
652 653 1.762957 GGCACCTCTAAGATAGCACCA 59.237 52.381 0.00 0.00 0.00 4.17
653 654 1.762957 TGGCACCTCTAAGATAGCACC 59.237 52.381 0.00 0.00 0.00 5.01
654 655 2.168521 TGTGGCACCTCTAAGATAGCAC 59.831 50.000 16.26 0.00 0.00 4.40
655 656 2.466846 TGTGGCACCTCTAAGATAGCA 58.533 47.619 16.26 0.00 0.00 3.49
656 657 3.397482 CATGTGGCACCTCTAAGATAGC 58.603 50.000 16.26 0.00 0.00 2.97
657 658 3.643320 TCCATGTGGCACCTCTAAGATAG 59.357 47.826 16.26 0.00 34.44 2.08
658 659 3.653164 TCCATGTGGCACCTCTAAGATA 58.347 45.455 16.26 0.00 34.44 1.98
659 660 2.481441 TCCATGTGGCACCTCTAAGAT 58.519 47.619 16.26 0.00 34.44 2.40
660 661 1.951209 TCCATGTGGCACCTCTAAGA 58.049 50.000 16.26 0.52 34.44 2.10
661 662 2.787473 TTCCATGTGGCACCTCTAAG 57.213 50.000 16.26 0.00 34.44 2.18
662 663 4.853468 TTATTCCATGTGGCACCTCTAA 57.147 40.909 16.26 5.14 34.44 2.10
663 664 4.853468 TTTATTCCATGTGGCACCTCTA 57.147 40.909 16.26 0.00 34.44 2.43
664 665 3.737559 TTTATTCCATGTGGCACCTCT 57.262 42.857 16.26 0.00 34.44 3.69
665 666 3.701040 ACATTTATTCCATGTGGCACCTC 59.299 43.478 16.26 0.00 33.42 3.85
666 667 3.711863 ACATTTATTCCATGTGGCACCT 58.288 40.909 16.26 1.43 33.42 4.00
667 668 4.081752 TCAACATTTATTCCATGTGGCACC 60.082 41.667 16.26 0.00 34.97 5.01
668 669 5.070770 TCAACATTTATTCCATGTGGCAC 57.929 39.130 11.55 11.55 34.97 5.01
669 670 5.662456 CATCAACATTTATTCCATGTGGCA 58.338 37.500 0.00 0.00 34.97 4.92
670 671 4.508861 GCATCAACATTTATTCCATGTGGC 59.491 41.667 0.00 0.00 34.97 5.01
671 672 4.741185 CGCATCAACATTTATTCCATGTGG 59.259 41.667 0.00 0.00 34.97 4.17
672 673 5.580661 TCGCATCAACATTTATTCCATGTG 58.419 37.500 0.00 0.00 34.97 3.21
673 674 5.833406 TCGCATCAACATTTATTCCATGT 57.167 34.783 0.00 0.00 36.36 3.21
674 675 5.688621 CCTTCGCATCAACATTTATTCCATG 59.311 40.000 0.00 0.00 0.00 3.66
675 676 5.593909 TCCTTCGCATCAACATTTATTCCAT 59.406 36.000 0.00 0.00 0.00 3.41
676 677 4.946772 TCCTTCGCATCAACATTTATTCCA 59.053 37.500 0.00 0.00 0.00 3.53
677 678 5.296780 TCTCCTTCGCATCAACATTTATTCC 59.703 40.000 0.00 0.00 0.00 3.01
678 679 6.258727 TCTCTCCTTCGCATCAACATTTATTC 59.741 38.462 0.00 0.00 0.00 1.75
679 680 6.115446 TCTCTCCTTCGCATCAACATTTATT 58.885 36.000 0.00 0.00 0.00 1.40
680 681 5.674525 TCTCTCCTTCGCATCAACATTTAT 58.325 37.500 0.00 0.00 0.00 1.40
681 682 5.084818 TCTCTCCTTCGCATCAACATTTA 57.915 39.130 0.00 0.00 0.00 1.40
682 683 3.937706 CTCTCTCCTTCGCATCAACATTT 59.062 43.478 0.00 0.00 0.00 2.32
683 684 3.055530 ACTCTCTCCTTCGCATCAACATT 60.056 43.478 0.00 0.00 0.00 2.71
684 685 2.499289 ACTCTCTCCTTCGCATCAACAT 59.501 45.455 0.00 0.00 0.00 2.71
685 686 1.895798 ACTCTCTCCTTCGCATCAACA 59.104 47.619 0.00 0.00 0.00 3.33
686 687 2.663826 ACTCTCTCCTTCGCATCAAC 57.336 50.000 0.00 0.00 0.00 3.18
687 688 2.099921 GCTACTCTCTCCTTCGCATCAA 59.900 50.000 0.00 0.00 0.00 2.57
688 689 1.678627 GCTACTCTCTCCTTCGCATCA 59.321 52.381 0.00 0.00 0.00 3.07
689 690 1.678627 TGCTACTCTCTCCTTCGCATC 59.321 52.381 0.00 0.00 0.00 3.91
690 691 1.769026 TGCTACTCTCTCCTTCGCAT 58.231 50.000 0.00 0.00 0.00 4.73
691 692 1.769026 ATGCTACTCTCTCCTTCGCA 58.231 50.000 0.00 0.00 0.00 5.10
692 693 3.992260 TTATGCTACTCTCTCCTTCGC 57.008 47.619 0.00 0.00 0.00 4.70
693 694 9.337396 AGATATATTATGCTACTCTCTCCTTCG 57.663 37.037 0.00 0.00 0.00 3.79
741 742 9.817809 GGTAAGACATATTGTGTTAAGAGATCA 57.182 33.333 0.00 0.00 42.36 2.92
742 743 9.817809 TGGTAAGACATATTGTGTTAAGAGATC 57.182 33.333 0.00 0.00 42.36 2.75
743 744 9.601217 GTGGTAAGACATATTGTGTTAAGAGAT 57.399 33.333 0.00 0.00 42.36 2.75
744 745 7.758076 CGTGGTAAGACATATTGTGTTAAGAGA 59.242 37.037 0.00 0.00 42.36 3.10
745 746 7.544566 ACGTGGTAAGACATATTGTGTTAAGAG 59.455 37.037 0.00 0.00 42.36 2.85
746 747 7.380536 ACGTGGTAAGACATATTGTGTTAAGA 58.619 34.615 0.00 0.00 42.36 2.10
747 748 7.591006 ACGTGGTAAGACATATTGTGTTAAG 57.409 36.000 0.00 0.00 42.36 1.85
748 749 7.966246 AACGTGGTAAGACATATTGTGTTAA 57.034 32.000 0.00 0.00 42.36 2.01
749 750 7.966246 AAACGTGGTAAGACATATTGTGTTA 57.034 32.000 0.00 0.00 42.36 2.41
750 751 6.870971 AAACGTGGTAAGACATATTGTGTT 57.129 33.333 0.00 0.00 42.36 3.32
751 752 6.870971 AAAACGTGGTAAGACATATTGTGT 57.129 33.333 0.00 0.00 45.83 3.72
752 753 7.960738 CCTAAAAACGTGGTAAGACATATTGTG 59.039 37.037 0.00 0.00 0.00 3.33
753 754 7.879160 TCCTAAAAACGTGGTAAGACATATTGT 59.121 33.333 0.00 0.00 0.00 2.71
754 755 8.259049 TCCTAAAAACGTGGTAAGACATATTG 57.741 34.615 0.00 0.00 0.00 1.90
755 756 8.851541 TTCCTAAAAACGTGGTAAGACATATT 57.148 30.769 0.00 0.00 0.00 1.28
757 758 9.941325 TTATTCCTAAAAACGTGGTAAGACATA 57.059 29.630 0.00 0.00 0.00 2.29
758 759 8.724229 GTTATTCCTAAAAACGTGGTAAGACAT 58.276 33.333 0.00 0.00 0.00 3.06
759 760 7.933033 AGTTATTCCTAAAAACGTGGTAAGACA 59.067 33.333 0.00 0.00 0.00 3.41
760 761 8.315391 AGTTATTCCTAAAAACGTGGTAAGAC 57.685 34.615 0.00 0.00 0.00 3.01
761 762 9.643693 CTAGTTATTCCTAAAAACGTGGTAAGA 57.356 33.333 0.00 0.00 0.00 2.10
762 763 9.428097 ACTAGTTATTCCTAAAAACGTGGTAAG 57.572 33.333 0.00 0.00 0.00 2.34
763 764 9.777297 AACTAGTTATTCCTAAAAACGTGGTAA 57.223 29.630 6.26 0.00 0.00 2.85
765 766 9.948964 ATAACTAGTTATTCCTAAAAACGTGGT 57.051 29.630 20.27 0.00 32.21 4.16
1666 1995 6.833342 AACTGAATTGTGCAAAATCAAGTC 57.167 33.333 14.41 11.35 0.00 3.01
3018 4895 2.490328 ACTTGTTGGTTGATGCAACG 57.510 45.000 0.00 0.00 44.36 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.