Multiple sequence alignment - TraesCS6D01G049600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G049600 chr6D 100.000 2480 0 0 1 2480 24028269 24030748 0.000000e+00 4580.0
1 TraesCS6D01G049600 chr6D 98.148 54 1 0 1996 2049 362955525 362955472 7.300000e-16 95.3
2 TraesCS6D01G049600 chr6B 90.893 1669 100 33 378 2014 38970695 38972343 0.000000e+00 2193.0
3 TraesCS6D01G049600 chr6B 92.692 260 19 0 64 323 688594584 688594843 2.330000e-100 375.0
4 TraesCS6D01G049600 chr6B 92.337 261 20 0 63 323 309685670 309685930 3.010000e-99 372.0
5 TraesCS6D01G049600 chr6B 90.037 271 26 1 64 334 118047076 118047345 1.410000e-92 350.0
6 TraesCS6D01G049600 chr6B 94.828 58 2 1 1993 2049 578466192 578466249 3.400000e-14 89.8
7 TraesCS6D01G049600 chr6A 91.115 1587 85 29 501 2041 22554825 22556401 0.000000e+00 2098.0
8 TraesCS6D01G049600 chr6A 91.603 262 22 0 62 323 605860051 605860312 1.810000e-96 363.0
9 TraesCS6D01G049600 chr6A 86.697 218 27 2 2045 2261 454682895 454683111 8.860000e-60 241.0
10 TraesCS6D01G049600 chr6A 88.333 60 6 1 1993 2052 600809748 600809806 1.230000e-08 71.3
11 TraesCS6D01G049600 chr3D 96.622 444 5 3 2047 2480 28478518 28478961 0.000000e+00 728.0
12 TraesCS6D01G049600 chr3D 99.533 214 1 0 2267 2480 40718834 40718621 8.320000e-105 390.0
13 TraesCS6D01G049600 chr3D 97.727 44 1 0 1996 2039 441369145 441369102 2.640000e-10 76.8
14 TraesCS6D01G049600 chr7D 90.889 450 6 11 2047 2480 548208141 548208571 2.770000e-159 571.0
15 TraesCS6D01G049600 chr7D 86.230 443 29 7 2047 2474 463877200 463876775 3.760000e-123 451.0
16 TraesCS6D01G049600 chr7D 91.571 261 22 0 62 322 634817904 634818164 6.520000e-96 361.0
17 TraesCS6D01G049600 chr7D 78.990 495 89 13 1000 1483 490881688 490881198 8.550000e-85 324.0
18 TraesCS6D01G049600 chr7D 94.737 38 2 0 1861 1898 529381951 529381988 2.660000e-05 60.2
19 TraesCS6D01G049600 chr3B 88.966 435 33 8 2055 2474 782651446 782651012 7.860000e-145 523.0
20 TraesCS6D01G049600 chr3B 94.643 56 3 0 1993 2048 39596368 39596423 1.220000e-13 87.9
21 TraesCS6D01G049600 chr4A 88.356 438 35 6 2053 2475 343932908 343933344 1.700000e-141 512.0
22 TraesCS6D01G049600 chr4A 92.982 57 4 0 1993 2049 366539149 366539093 1.580000e-12 84.2
23 TraesCS6D01G049600 chr4D 86.667 435 27 7 2054 2474 134536826 134537243 1.050000e-123 453.0
24 TraesCS6D01G049600 chr4D 86.256 422 27 16 2054 2474 450714181 450714572 1.760000e-116 429.0
25 TraesCS6D01G049600 chr4D 92.593 54 4 0 1996 2049 457066793 457066740 7.350000e-11 78.7
26 TraesCS6D01G049600 chr2D 84.562 434 34 8 2054 2472 93808369 93808784 1.380000e-107 399.0
27 TraesCS6D01G049600 chr2D 81.618 136 19 3 997 1132 27062505 27062634 9.380000e-20 108.0
28 TraesCS6D01G049600 chr1A 83.255 424 53 10 2055 2471 55131564 55131976 8.380000e-100 374.0
29 TraesCS6D01G049600 chr1B 91.603 262 22 0 62 323 505094477 505094216 1.810000e-96 363.0
30 TraesCS6D01G049600 chr1B 91.221 262 23 0 62 323 252161658 252161919 8.430000e-95 357.0
31 TraesCS6D01G049600 chr2A 91.538 260 22 0 64 323 755472239 755472498 2.350000e-95 359.0
32 TraesCS6D01G049600 chr2A 84.691 307 41 3 1175 1481 29262266 29262566 4.010000e-78 302.0
33 TraesCS6D01G049600 chr5B 91.221 262 23 0 62 323 313073049 313073310 8.430000e-95 357.0
34 TraesCS6D01G049600 chr7A 80.041 491 84 12 1000 1480 556921314 556920828 3.920000e-93 351.0
35 TraesCS6D01G049600 chr7B 79.796 490 85 11 1000 1479 519524475 519523990 6.570000e-91 344.0
36 TraesCS6D01G049600 chr2B 86.084 309 33 7 1175 1481 42264520 42264820 8.550000e-85 324.0
37 TraesCS6D01G049600 chrUn 93.103 58 3 1 1993 2049 2874640 2874697 1.580000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G049600 chr6D 24028269 24030748 2479 False 4580 4580 100.000 1 2480 1 chr6D.!!$F1 2479
1 TraesCS6D01G049600 chr6B 38970695 38972343 1648 False 2193 2193 90.893 378 2014 1 chr6B.!!$F1 1636
2 TraesCS6D01G049600 chr6A 22554825 22556401 1576 False 2098 2098 91.115 501 2041 1 chr6A.!!$F1 1540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 328 0.039618 TTGAAAGATGGAGGGGGCAC 59.96 55.0 0.0 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2084 2150 0.035056 CTGTGTGGCTTTAGAGGGGG 60.035 60.0 0.0 0.0 0.0 5.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.865111 TTTCGACACATGCAGGTTCG 59.135 50.000 21.57 21.57 0.00 3.95
21 22 0.249699 TTCGACACATGCAGGTTCGT 60.250 50.000 24.32 13.24 0.00 3.85
22 23 0.249699 TCGACACATGCAGGTTCGTT 60.250 50.000 24.32 4.26 0.00 3.85
23 24 0.163788 CGACACATGCAGGTTCGTTC 59.836 55.000 20.22 8.00 0.00 3.95
24 25 1.225855 GACACATGCAGGTTCGTTCA 58.774 50.000 0.00 0.00 0.00 3.18
25 26 1.806542 GACACATGCAGGTTCGTTCAT 59.193 47.619 0.00 0.00 0.00 2.57
26 27 1.806542 ACACATGCAGGTTCGTTCATC 59.193 47.619 0.00 0.00 0.00 2.92
27 28 1.131126 CACATGCAGGTTCGTTCATCC 59.869 52.381 0.00 0.00 0.00 3.51
28 29 1.271325 ACATGCAGGTTCGTTCATCCA 60.271 47.619 0.00 0.00 0.00 3.41
29 30 1.399440 CATGCAGGTTCGTTCATCCAG 59.601 52.381 0.00 0.00 0.00 3.86
30 31 0.684535 TGCAGGTTCGTTCATCCAGA 59.315 50.000 0.00 0.00 0.00 3.86
31 32 1.071542 TGCAGGTTCGTTCATCCAGAA 59.928 47.619 0.00 0.00 0.00 3.02
40 41 2.559698 TTCATCCAGAACCGCTCAAA 57.440 45.000 0.00 0.00 0.00 2.69
41 42 2.559698 TCATCCAGAACCGCTCAAAA 57.440 45.000 0.00 0.00 0.00 2.44
42 43 3.071874 TCATCCAGAACCGCTCAAAAT 57.928 42.857 0.00 0.00 0.00 1.82
43 44 3.009723 TCATCCAGAACCGCTCAAAATC 58.990 45.455 0.00 0.00 0.00 2.17
44 45 1.438651 TCCAGAACCGCTCAAAATCG 58.561 50.000 0.00 0.00 0.00 3.34
45 46 1.156736 CCAGAACCGCTCAAAATCGT 58.843 50.000 0.00 0.00 0.00 3.73
46 47 2.028839 TCCAGAACCGCTCAAAATCGTA 60.029 45.455 0.00 0.00 0.00 3.43
47 48 2.739913 CCAGAACCGCTCAAAATCGTAA 59.260 45.455 0.00 0.00 0.00 3.18
48 49 3.187637 CCAGAACCGCTCAAAATCGTAAA 59.812 43.478 0.00 0.00 0.00 2.01
49 50 4.142687 CCAGAACCGCTCAAAATCGTAAAT 60.143 41.667 0.00 0.00 0.00 1.40
50 51 4.788100 CAGAACCGCTCAAAATCGTAAATG 59.212 41.667 0.00 0.00 0.00 2.32
51 52 4.454504 AGAACCGCTCAAAATCGTAAATGT 59.545 37.500 0.00 0.00 0.00 2.71
52 53 4.078363 ACCGCTCAAAATCGTAAATGTG 57.922 40.909 0.00 0.00 0.00 3.21
53 54 2.845967 CCGCTCAAAATCGTAAATGTGC 59.154 45.455 0.00 0.00 0.00 4.57
54 55 3.487536 CGCTCAAAATCGTAAATGTGCA 58.512 40.909 0.00 0.00 33.25 4.57
55 56 3.297979 CGCTCAAAATCGTAAATGTGCAC 59.702 43.478 10.75 10.75 33.25 4.57
56 57 4.475944 GCTCAAAATCGTAAATGTGCACT 58.524 39.130 19.41 0.00 33.72 4.40
57 58 4.554973 GCTCAAAATCGTAAATGTGCACTC 59.445 41.667 19.41 2.79 33.72 3.51
58 59 5.617751 GCTCAAAATCGTAAATGTGCACTCT 60.618 40.000 19.41 2.18 33.72 3.24
59 60 5.927030 TCAAAATCGTAAATGTGCACTCTC 58.073 37.500 19.41 3.48 0.00 3.20
60 61 5.700832 TCAAAATCGTAAATGTGCACTCTCT 59.299 36.000 19.41 2.52 0.00 3.10
61 62 6.204688 TCAAAATCGTAAATGTGCACTCTCTT 59.795 34.615 19.41 8.28 0.00 2.85
62 63 7.386573 TCAAAATCGTAAATGTGCACTCTCTTA 59.613 33.333 19.41 7.32 0.00 2.10
63 64 7.849804 AAATCGTAAATGTGCACTCTCTTAT 57.150 32.000 19.41 0.00 0.00 1.73
64 65 8.942338 AAATCGTAAATGTGCACTCTCTTATA 57.058 30.769 19.41 0.00 0.00 0.98
65 66 7.932120 ATCGTAAATGTGCACTCTCTTATAC 57.068 36.000 19.41 10.11 0.00 1.47
66 67 7.096884 TCGTAAATGTGCACTCTCTTATACT 57.903 36.000 19.41 0.00 0.00 2.12
67 68 7.194278 TCGTAAATGTGCACTCTCTTATACTC 58.806 38.462 19.41 0.00 0.00 2.59
68 69 6.418226 CGTAAATGTGCACTCTCTTATACTCC 59.582 42.308 19.41 0.00 0.00 3.85
69 70 4.946478 ATGTGCACTCTCTTATACTCCC 57.054 45.455 19.41 0.00 0.00 4.30
70 71 3.982516 TGTGCACTCTCTTATACTCCCT 58.017 45.455 19.41 0.00 0.00 4.20
71 72 3.954904 TGTGCACTCTCTTATACTCCCTC 59.045 47.826 19.41 0.00 0.00 4.30
72 73 3.319689 GTGCACTCTCTTATACTCCCTCC 59.680 52.174 10.32 0.00 0.00 4.30
73 74 2.554893 GCACTCTCTTATACTCCCTCCG 59.445 54.545 0.00 0.00 0.00 4.63
74 75 3.822940 CACTCTCTTATACTCCCTCCGT 58.177 50.000 0.00 0.00 0.00 4.69
75 76 3.816523 CACTCTCTTATACTCCCTCCGTC 59.183 52.174 0.00 0.00 0.00 4.79
76 77 3.181441 ACTCTCTTATACTCCCTCCGTCC 60.181 52.174 0.00 0.00 0.00 4.79
77 78 3.054576 TCTCTTATACTCCCTCCGTCCT 58.945 50.000 0.00 0.00 0.00 3.85
78 79 3.462579 TCTCTTATACTCCCTCCGTCCTT 59.537 47.826 0.00 0.00 0.00 3.36
79 80 4.079327 TCTCTTATACTCCCTCCGTCCTTT 60.079 45.833 0.00 0.00 0.00 3.11
80 81 5.133322 TCTCTTATACTCCCTCCGTCCTTTA 59.867 44.000 0.00 0.00 0.00 1.85
81 82 5.769835 TCTTATACTCCCTCCGTCCTTTAA 58.230 41.667 0.00 0.00 0.00 1.52
82 83 6.197168 TCTTATACTCCCTCCGTCCTTTAAA 58.803 40.000 0.00 0.00 0.00 1.52
83 84 6.669154 TCTTATACTCCCTCCGTCCTTTAAAA 59.331 38.462 0.00 0.00 0.00 1.52
84 85 5.767277 ATACTCCCTCCGTCCTTTAAAAA 57.233 39.130 0.00 0.00 0.00 1.94
85 86 4.017177 ACTCCCTCCGTCCTTTAAAAAG 57.983 45.455 0.00 0.00 35.79 2.27
86 87 3.393609 ACTCCCTCCGTCCTTTAAAAAGT 59.606 43.478 2.03 0.00 34.20 2.66
87 88 3.746940 TCCCTCCGTCCTTTAAAAAGTG 58.253 45.455 2.03 0.00 34.20 3.16
88 89 3.136992 TCCCTCCGTCCTTTAAAAAGTGT 59.863 43.478 2.03 0.00 34.20 3.55
89 90 4.347583 TCCCTCCGTCCTTTAAAAAGTGTA 59.652 41.667 2.03 0.00 34.20 2.90
90 91 4.453478 CCCTCCGTCCTTTAAAAAGTGTAC 59.547 45.833 2.03 0.00 34.20 2.90
91 92 5.303165 CCTCCGTCCTTTAAAAAGTGTACT 58.697 41.667 0.00 0.00 34.20 2.73
92 93 5.761726 CCTCCGTCCTTTAAAAAGTGTACTT 59.238 40.000 0.00 0.00 37.91 2.24
94 95 7.250445 TCCGTCCTTTAAAAAGTGTACTTTC 57.750 36.000 10.16 0.00 44.69 2.62
95 96 6.822676 TCCGTCCTTTAAAAAGTGTACTTTCA 59.177 34.615 10.16 0.11 44.69 2.69
96 97 7.336427 TCCGTCCTTTAAAAAGTGTACTTTCAA 59.664 33.333 10.16 5.67 44.69 2.69
97 98 8.132995 CCGTCCTTTAAAAAGTGTACTTTCAAT 58.867 33.333 10.16 3.80 44.69 2.57
98 99 9.511144 CGTCCTTTAAAAAGTGTACTTTCAATT 57.489 29.630 10.16 4.73 44.69 2.32
108 109 8.702163 AAGTGTACTTTCAATTTTGTTGAAGG 57.298 30.769 10.01 10.01 39.30 3.46
109 110 8.062065 AGTGTACTTTCAATTTTGTTGAAGGA 57.938 30.769 16.26 1.81 39.30 3.36
110 111 8.695456 AGTGTACTTTCAATTTTGTTGAAGGAT 58.305 29.630 16.26 6.40 39.30 3.24
111 112 8.968242 GTGTACTTTCAATTTTGTTGAAGGATC 58.032 33.333 16.26 10.24 39.30 3.36
112 113 8.690884 TGTACTTTCAATTTTGTTGAAGGATCA 58.309 29.630 16.26 11.98 39.30 2.92
113 114 9.528018 GTACTTTCAATTTTGTTGAAGGATCAA 57.472 29.630 16.26 0.00 43.18 2.57
115 116 8.882736 ACTTTCAATTTTGTTGAAGGATCAAAC 58.117 29.630 16.26 0.00 46.66 2.93
116 117 9.101655 CTTTCAATTTTGTTGAAGGATCAAACT 57.898 29.630 6.76 0.00 46.66 2.66
119 120 9.912634 TCAATTTTGTTGAAGGATCAAACTATC 57.087 29.630 0.00 0.00 46.66 2.08
120 121 9.918630 CAATTTTGTTGAAGGATCAAACTATCT 57.081 29.630 0.00 0.00 46.66 1.98
126 127 9.793259 TGTTGAAGGATCAAACTATCTTAAAGT 57.207 29.630 0.00 0.00 46.66 2.66
135 136 6.812879 AAACTATCTTAAAGTTTGACCGGG 57.187 37.500 6.32 0.00 43.66 5.73
136 137 5.494390 ACTATCTTAAAGTTTGACCGGGT 57.506 39.130 6.32 0.00 0.00 5.28
137 138 5.872963 ACTATCTTAAAGTTTGACCGGGTT 58.127 37.500 6.32 0.00 0.00 4.11
138 139 6.301486 ACTATCTTAAAGTTTGACCGGGTTT 58.699 36.000 6.32 0.00 0.00 3.27
139 140 4.904253 TCTTAAAGTTTGACCGGGTTTG 57.096 40.909 6.32 0.00 0.00 2.93
140 141 4.271661 TCTTAAAGTTTGACCGGGTTTGT 58.728 39.130 6.32 0.00 0.00 2.83
141 142 2.951457 AAAGTTTGACCGGGTTTGTG 57.049 45.000 6.32 0.00 0.00 3.33
142 143 0.458260 AAGTTTGACCGGGTTTGTGC 59.542 50.000 6.32 0.00 0.00 4.57
143 144 0.681564 AGTTTGACCGGGTTTGTGCA 60.682 50.000 6.32 0.00 0.00 4.57
144 145 0.173708 GTTTGACCGGGTTTGTGCAA 59.826 50.000 6.32 0.00 0.00 4.08
145 146 0.895530 TTTGACCGGGTTTGTGCAAA 59.104 45.000 6.32 3.94 0.00 3.68
146 147 0.895530 TTGACCGGGTTTGTGCAAAA 59.104 45.000 6.32 0.00 31.33 2.44
147 148 0.895530 TGACCGGGTTTGTGCAAAAA 59.104 45.000 6.32 0.00 31.33 1.94
148 149 1.482593 TGACCGGGTTTGTGCAAAAAT 59.517 42.857 6.32 0.00 31.33 1.82
149 150 2.693591 TGACCGGGTTTGTGCAAAAATA 59.306 40.909 6.32 0.00 31.33 1.40
150 151 3.322254 TGACCGGGTTTGTGCAAAAATAT 59.678 39.130 6.32 0.00 31.33 1.28
151 152 4.523173 TGACCGGGTTTGTGCAAAAATATA 59.477 37.500 6.32 0.00 31.33 0.86
152 153 5.186021 TGACCGGGTTTGTGCAAAAATATAT 59.814 36.000 6.32 0.00 31.33 0.86
153 154 6.043854 ACCGGGTTTGTGCAAAAATATATT 57.956 33.333 6.32 0.00 31.33 1.28
154 155 7.093902 TGACCGGGTTTGTGCAAAAATATATTA 60.094 33.333 6.32 0.00 31.33 0.98
155 156 7.612677 ACCGGGTTTGTGCAAAAATATATTAA 58.387 30.769 6.32 0.00 31.33 1.40
156 157 8.261522 ACCGGGTTTGTGCAAAAATATATTAAT 58.738 29.630 6.32 0.00 31.33 1.40
157 158 8.547069 CCGGGTTTGTGCAAAAATATATTAATG 58.453 33.333 5.11 2.59 31.33 1.90
158 159 9.092876 CGGGTTTGTGCAAAAATATATTAATGT 57.907 29.630 5.11 0.00 31.33 2.71
176 177 5.806654 AATGTTTGTGAAGCCAAATAGGT 57.193 34.783 0.00 0.00 40.61 3.08
177 178 6.909550 AATGTTTGTGAAGCCAAATAGGTA 57.090 33.333 0.00 0.00 40.61 3.08
178 179 7.480760 AATGTTTGTGAAGCCAAATAGGTAT 57.519 32.000 0.00 0.00 40.61 2.73
179 180 8.588290 AATGTTTGTGAAGCCAAATAGGTATA 57.412 30.769 0.00 0.00 40.61 1.47
180 181 8.766994 ATGTTTGTGAAGCCAAATAGGTATAT 57.233 30.769 0.00 0.00 40.61 0.86
181 182 7.995289 TGTTTGTGAAGCCAAATAGGTATATG 58.005 34.615 0.00 0.00 40.61 1.78
182 183 7.831690 TGTTTGTGAAGCCAAATAGGTATATGA 59.168 33.333 0.00 0.00 40.61 2.15
183 184 8.850156 GTTTGTGAAGCCAAATAGGTATATGAT 58.150 33.333 0.00 0.00 40.61 2.45
184 185 7.984422 TGTGAAGCCAAATAGGTATATGATG 57.016 36.000 0.00 0.00 40.61 3.07
185 186 7.744733 TGTGAAGCCAAATAGGTATATGATGA 58.255 34.615 0.00 0.00 40.61 2.92
186 187 8.217111 TGTGAAGCCAAATAGGTATATGATGAA 58.783 33.333 0.00 0.00 40.61 2.57
187 188 9.066892 GTGAAGCCAAATAGGTATATGATGAAA 57.933 33.333 0.00 0.00 40.61 2.69
188 189 9.639563 TGAAGCCAAATAGGTATATGATGAAAA 57.360 29.630 0.00 0.00 40.61 2.29
240 241 9.537192 ACTAATTTGATGGCATAAATGTTGATG 57.463 29.630 0.00 0.00 0.00 3.07
241 242 9.537192 CTAATTTGATGGCATAAATGTTGATGT 57.463 29.630 0.00 0.00 0.00 3.06
295 296 9.662545 AAAATGTTTGACTTTTCAACAAAGTTG 57.337 25.926 3.58 3.58 41.64 3.16
296 297 6.777526 TGTTTGACTTTTCAACAAAGTTGG 57.222 33.333 9.72 0.00 41.64 3.77
297 298 6.516718 TGTTTGACTTTTCAACAAAGTTGGA 58.483 32.000 9.72 0.00 41.64 3.53
298 299 6.422400 TGTTTGACTTTTCAACAAAGTTGGAC 59.578 34.615 9.72 2.61 41.64 4.02
299 300 4.728534 TGACTTTTCAACAAAGTTGGACG 58.271 39.130 9.72 0.00 40.27 4.79
300 301 4.216687 TGACTTTTCAACAAAGTTGGACGT 59.783 37.500 9.72 0.00 40.27 4.34
301 302 5.411977 TGACTTTTCAACAAAGTTGGACGTA 59.588 36.000 9.72 0.00 40.27 3.57
302 303 5.633927 ACTTTTCAACAAAGTTGGACGTAC 58.366 37.500 9.72 0.00 37.18 3.67
303 304 5.181622 ACTTTTCAACAAAGTTGGACGTACA 59.818 36.000 0.00 0.00 37.18 2.90
304 305 4.603231 TTCAACAAAGTTGGACGTACAC 57.397 40.909 0.00 0.00 0.00 2.90
305 306 3.864243 TCAACAAAGTTGGACGTACACT 58.136 40.909 0.00 0.00 0.00 3.55
306 307 3.866910 TCAACAAAGTTGGACGTACACTC 59.133 43.478 0.00 0.00 0.00 3.51
307 308 3.814005 ACAAAGTTGGACGTACACTCT 57.186 42.857 0.00 0.00 0.00 3.24
308 309 4.133013 ACAAAGTTGGACGTACACTCTT 57.867 40.909 0.00 5.73 0.00 2.85
309 310 4.510571 ACAAAGTTGGACGTACACTCTTT 58.489 39.130 18.66 18.66 0.00 2.52
310 311 4.331717 ACAAAGTTGGACGTACACTCTTTG 59.668 41.667 33.06 33.06 42.09 2.77
311 312 4.395959 AAGTTGGACGTACACTCTTTGA 57.604 40.909 0.00 0.00 0.00 2.69
312 313 4.395959 AGTTGGACGTACACTCTTTGAA 57.604 40.909 0.00 0.00 0.00 2.69
313 314 4.761975 AGTTGGACGTACACTCTTTGAAA 58.238 39.130 0.00 0.00 0.00 2.69
314 315 4.809426 AGTTGGACGTACACTCTTTGAAAG 59.191 41.667 0.00 0.00 0.00 2.62
315 316 4.659111 TGGACGTACACTCTTTGAAAGA 57.341 40.909 7.49 7.49 35.87 2.52
316 317 5.209818 TGGACGTACACTCTTTGAAAGAT 57.790 39.130 8.23 0.00 36.82 2.40
317 318 4.988540 TGGACGTACACTCTTTGAAAGATG 59.011 41.667 8.23 10.96 36.82 2.90
318 319 4.389077 GGACGTACACTCTTTGAAAGATGG 59.611 45.833 8.23 6.29 36.82 3.51
319 320 5.209818 ACGTACACTCTTTGAAAGATGGA 57.790 39.130 8.23 3.48 36.82 3.41
320 321 5.230942 ACGTACACTCTTTGAAAGATGGAG 58.769 41.667 8.23 0.00 36.82 3.86
321 322 4.627467 CGTACACTCTTTGAAAGATGGAGG 59.373 45.833 8.23 7.71 36.82 4.30
322 323 4.026356 ACACTCTTTGAAAGATGGAGGG 57.974 45.455 8.23 0.35 36.82 4.30
323 324 3.245052 ACACTCTTTGAAAGATGGAGGGG 60.245 47.826 8.23 0.00 36.82 4.79
324 325 2.310052 ACTCTTTGAAAGATGGAGGGGG 59.690 50.000 8.23 0.00 36.82 5.40
325 326 1.005924 TCTTTGAAAGATGGAGGGGGC 59.994 52.381 3.02 0.00 31.20 5.80
326 327 0.783206 TTTGAAAGATGGAGGGGGCA 59.217 50.000 0.00 0.00 0.00 5.36
327 328 0.039618 TTGAAAGATGGAGGGGGCAC 59.960 55.000 0.00 0.00 0.00 5.01
328 329 0.846427 TGAAAGATGGAGGGGGCACT 60.846 55.000 0.00 0.00 0.00 4.40
329 330 0.332972 GAAAGATGGAGGGGGCACTT 59.667 55.000 0.00 0.00 0.00 3.16
330 331 0.332972 AAAGATGGAGGGGGCACTTC 59.667 55.000 0.00 0.00 0.00 3.01
331 332 1.575447 AAGATGGAGGGGGCACTTCC 61.575 60.000 11.65 11.65 0.00 3.46
332 333 2.003548 GATGGAGGGGGCACTTCCT 61.004 63.158 19.59 4.50 35.07 3.36
333 334 1.544917 ATGGAGGGGGCACTTCCTT 60.545 57.895 19.59 10.13 32.90 3.36
334 335 1.575447 ATGGAGGGGGCACTTCCTTC 61.575 60.000 19.59 3.28 32.90 3.46
335 336 2.269241 GAGGGGGCACTTCCTTCG 59.731 66.667 0.00 0.00 32.90 3.79
336 337 3.978571 GAGGGGGCACTTCCTTCGC 62.979 68.421 0.00 0.00 32.90 4.70
340 341 4.344865 GGCACTTCCTTCGCCCCA 62.345 66.667 0.00 0.00 40.07 4.96
341 342 2.044946 GCACTTCCTTCGCCCCAT 60.045 61.111 0.00 0.00 0.00 4.00
342 343 1.223487 GCACTTCCTTCGCCCCATA 59.777 57.895 0.00 0.00 0.00 2.74
343 344 0.393808 GCACTTCCTTCGCCCCATAA 60.394 55.000 0.00 0.00 0.00 1.90
344 345 1.750682 GCACTTCCTTCGCCCCATAAT 60.751 52.381 0.00 0.00 0.00 1.28
345 346 2.486548 GCACTTCCTTCGCCCCATAATA 60.487 50.000 0.00 0.00 0.00 0.98
346 347 3.810743 GCACTTCCTTCGCCCCATAATAT 60.811 47.826 0.00 0.00 0.00 1.28
347 348 4.398319 CACTTCCTTCGCCCCATAATATT 58.602 43.478 0.00 0.00 0.00 1.28
348 349 4.216257 CACTTCCTTCGCCCCATAATATTG 59.784 45.833 0.00 0.00 0.00 1.90
349 350 2.790433 TCCTTCGCCCCATAATATTGC 58.210 47.619 0.00 0.00 0.00 3.56
350 351 2.375174 TCCTTCGCCCCATAATATTGCT 59.625 45.455 0.00 0.00 0.00 3.91
351 352 3.157087 CCTTCGCCCCATAATATTGCTT 58.843 45.455 0.00 0.00 0.00 3.91
352 353 3.057315 CCTTCGCCCCATAATATTGCTTG 60.057 47.826 0.00 0.00 0.00 4.01
353 354 3.500448 TCGCCCCATAATATTGCTTGA 57.500 42.857 0.00 0.00 0.00 3.02
354 355 3.826524 TCGCCCCATAATATTGCTTGAA 58.173 40.909 0.00 0.00 0.00 2.69
355 356 4.211125 TCGCCCCATAATATTGCTTGAAA 58.789 39.130 0.00 0.00 0.00 2.69
356 357 4.646945 TCGCCCCATAATATTGCTTGAAAA 59.353 37.500 0.00 0.00 0.00 2.29
357 358 5.127845 TCGCCCCATAATATTGCTTGAAAAA 59.872 36.000 0.00 0.00 0.00 1.94
358 359 5.990996 CGCCCCATAATATTGCTTGAAAAAT 59.009 36.000 0.00 0.00 0.00 1.82
359 360 7.014711 TCGCCCCATAATATTGCTTGAAAAATA 59.985 33.333 0.00 0.00 0.00 1.40
360 361 7.116233 CGCCCCATAATATTGCTTGAAAAATAC 59.884 37.037 0.00 0.00 0.00 1.89
361 362 8.150296 GCCCCATAATATTGCTTGAAAAATACT 58.850 33.333 0.00 0.00 0.00 2.12
444 445 7.337689 TGCACCATATATAATCTGAAATGGAGC 59.662 37.037 12.67 12.67 45.49 4.70
454 455 1.626321 TGAAATGGAGCGAGTACCCAA 59.374 47.619 0.00 0.00 33.15 4.12
531 532 1.140312 AGCTCAGTCCAACCTCCAAA 58.860 50.000 0.00 0.00 0.00 3.28
548 549 2.070654 AAAGCGCCAAACTCCAACCG 62.071 55.000 2.29 0.00 0.00 4.44
551 552 2.325082 CGCCAAACTCCAACCGAGG 61.325 63.158 0.00 0.00 43.57 4.63
556 557 0.328258 AAACTCCAACCGAGGATGGG 59.672 55.000 16.86 10.77 43.57 4.00
565 566 1.221840 CGAGGATGGGTGGGACAAG 59.778 63.158 0.00 0.00 44.16 3.16
572 573 2.298661 GGGTGGGACAAGGACGGAT 61.299 63.158 0.00 0.00 44.16 4.18
573 574 1.221021 GGTGGGACAAGGACGGATC 59.779 63.158 0.00 0.00 44.16 3.36
574 575 1.550130 GGTGGGACAAGGACGGATCA 61.550 60.000 0.00 0.00 44.16 2.92
640 642 9.313118 ACCAACAGAGAAATGTTTGTTAATTTC 57.687 29.630 0.00 0.00 41.41 2.17
647 649 7.145323 AGAAATGTTTGTTAATTTCCCGTCAG 58.855 34.615 4.88 0.00 41.62 3.51
989 1007 0.734889 CCTTGCTTGCCGATCGATTT 59.265 50.000 18.66 0.00 0.00 2.17
996 1023 1.651987 TGCCGATCGATTTTCAGGTC 58.348 50.000 18.66 0.00 0.00 3.85
1443 1470 0.251653 AGTACACCTCCGCCTTCTCA 60.252 55.000 0.00 0.00 0.00 3.27
1461 1488 2.207924 AGACGAGAACCCCAACGCT 61.208 57.895 0.00 0.00 0.00 5.07
1491 1518 0.170339 TCATGTAGTCGGTGCTCGTG 59.830 55.000 0.00 0.00 40.32 4.35
1522 1573 0.035439 TTTAGCCAGGCCTTCCTTCG 60.035 55.000 8.22 0.00 41.93 3.79
1541 1592 2.686915 TCGGCTAAGCTTGTAGTAGGTC 59.313 50.000 9.86 0.00 0.00 3.85
1542 1593 2.223758 CGGCTAAGCTTGTAGTAGGTCC 60.224 54.545 9.86 0.00 0.00 4.46
1590 1648 9.976255 TGTATAATTATTTTGCACGTTGTACTC 57.024 29.630 2.68 0.00 0.00 2.59
1653 1715 6.757897 TTGCCTTTACGTAGCTAGTAGTTA 57.242 37.500 0.00 0.00 0.00 2.24
1699 1761 1.636003 GAACCAGGGGATTCAGTTCCT 59.364 52.381 0.00 0.00 35.97 3.36
1706 1768 4.702131 CAGGGGATTCAGTTCCTTGTTTAG 59.298 45.833 0.00 0.00 35.97 1.85
1934 1996 3.181462 TGCTATCTTAGAGGTGCCACATG 60.181 47.826 0.00 0.00 0.00 3.21
1948 2010 5.395546 GGTGCCACATGGAATAAATGTTGAT 60.396 40.000 0.87 0.00 36.10 2.57
1950 2012 4.508861 GCCACATGGAATAAATGTTGATGC 59.491 41.667 0.87 0.00 36.10 3.91
1952 2014 5.450274 CCACATGGAATAAATGTTGATGCGA 60.450 40.000 0.00 0.00 36.10 5.10
1957 2019 5.066375 TGGAATAAATGTTGATGCGAAGGAG 59.934 40.000 0.00 0.00 0.00 3.69
1958 2020 5.296780 GGAATAAATGTTGATGCGAAGGAGA 59.703 40.000 0.00 0.00 0.00 3.71
1962 2024 1.895798 TGTTGATGCGAAGGAGAGAGT 59.104 47.619 0.00 0.00 0.00 3.24
1964 2026 3.129462 TGTTGATGCGAAGGAGAGAGTAG 59.871 47.826 0.00 0.00 0.00 2.57
1965 2027 1.678627 TGATGCGAAGGAGAGAGTAGC 59.321 52.381 0.00 0.00 0.00 3.58
1966 2028 1.678627 GATGCGAAGGAGAGAGTAGCA 59.321 52.381 0.00 0.00 37.54 3.49
1967 2029 1.769026 TGCGAAGGAGAGAGTAGCAT 58.231 50.000 0.00 0.00 0.00 3.79
1968 2030 2.932261 TGCGAAGGAGAGAGTAGCATA 58.068 47.619 0.00 0.00 0.00 3.14
1970 2032 3.891977 TGCGAAGGAGAGAGTAGCATAAT 59.108 43.478 0.00 0.00 0.00 1.28
1971 2033 5.070685 TGCGAAGGAGAGAGTAGCATAATA 58.929 41.667 0.00 0.00 0.00 0.98
1972 2034 5.712446 TGCGAAGGAGAGAGTAGCATAATAT 59.288 40.000 0.00 0.00 0.00 1.28
1974 2036 7.558081 TGCGAAGGAGAGAGTAGCATAATATAT 59.442 37.037 0.00 0.00 0.00 0.86
1975 2037 8.073768 GCGAAGGAGAGAGTAGCATAATATATC 58.926 40.741 0.00 0.00 0.00 1.63
1976 2038 9.337396 CGAAGGAGAGAGTAGCATAATATATCT 57.663 37.037 0.00 0.00 0.00 1.98
2041 2107 8.086851 TGTCTTACCACGTTTTTAGGAATAAC 57.913 34.615 0.00 0.00 0.00 1.89
2042 2108 7.933033 TGTCTTACCACGTTTTTAGGAATAACT 59.067 33.333 0.00 0.00 0.00 2.24
2043 2109 9.423061 GTCTTACCACGTTTTTAGGAATAACTA 57.577 33.333 0.00 0.00 0.00 2.24
2044 2110 9.643693 TCTTACCACGTTTTTAGGAATAACTAG 57.356 33.333 0.00 0.00 0.00 2.57
2045 2111 9.428097 CTTACCACGTTTTTAGGAATAACTAGT 57.572 33.333 0.00 0.00 0.00 2.57
2046 2112 9.777297 TTACCACGTTTTTAGGAATAACTAGTT 57.223 29.630 13.68 13.68 0.00 2.24
2048 2114 9.948964 ACCACGTTTTTAGGAATAACTAGTTAT 57.051 29.630 20.27 20.27 37.36 1.89
2087 2153 8.063200 ACTATTAAAAGAGCAAACATAACCCC 57.937 34.615 0.00 0.00 0.00 4.95
2088 2154 5.731957 TTAAAAGAGCAAACATAACCCCC 57.268 39.130 0.00 0.00 0.00 5.40
2089 2155 3.542969 AAAGAGCAAACATAACCCCCT 57.457 42.857 0.00 0.00 0.00 4.79
2090 2156 2.808906 AGAGCAAACATAACCCCCTC 57.191 50.000 0.00 0.00 0.00 4.30
2091 2157 2.279173 AGAGCAAACATAACCCCCTCT 58.721 47.619 0.00 0.00 0.00 3.69
2092 2158 3.460825 AGAGCAAACATAACCCCCTCTA 58.539 45.455 0.00 0.00 0.00 2.43
2093 2159 3.850173 AGAGCAAACATAACCCCCTCTAA 59.150 43.478 0.00 0.00 0.00 2.10
2094 2160 4.291249 AGAGCAAACATAACCCCCTCTAAA 59.709 41.667 0.00 0.00 0.00 1.85
2095 2161 4.600062 AGCAAACATAACCCCCTCTAAAG 58.400 43.478 0.00 0.00 0.00 1.85
2096 2162 3.130516 GCAAACATAACCCCCTCTAAAGC 59.869 47.826 0.00 0.00 0.00 3.51
2097 2163 3.664551 AACATAACCCCCTCTAAAGCC 57.335 47.619 0.00 0.00 0.00 4.35
2098 2164 2.568979 ACATAACCCCCTCTAAAGCCA 58.431 47.619 0.00 0.00 0.00 4.75
2099 2165 2.241430 ACATAACCCCCTCTAAAGCCAC 59.759 50.000 0.00 0.00 0.00 5.01
2100 2166 2.047769 TAACCCCCTCTAAAGCCACA 57.952 50.000 0.00 0.00 0.00 4.17
2101 2167 0.404426 AACCCCCTCTAAAGCCACAC 59.596 55.000 0.00 0.00 0.00 3.82
2102 2168 0.770557 ACCCCCTCTAAAGCCACACA 60.771 55.000 0.00 0.00 0.00 3.72
2103 2169 0.035056 CCCCCTCTAAAGCCACACAG 60.035 60.000 0.00 0.00 0.00 3.66
2104 2170 0.678048 CCCCTCTAAAGCCACACAGC 60.678 60.000 0.00 0.00 0.00 4.40
2105 2171 1.021390 CCCTCTAAAGCCACACAGCG 61.021 60.000 0.00 0.00 38.01 5.18
2106 2172 0.037326 CCTCTAAAGCCACACAGCGA 60.037 55.000 0.00 0.00 38.01 4.93
2107 2173 1.608025 CCTCTAAAGCCACACAGCGAA 60.608 52.381 0.00 0.00 38.01 4.70
2108 2174 1.728971 CTCTAAAGCCACACAGCGAAG 59.271 52.381 0.00 0.00 38.01 3.79
2109 2175 1.070134 TCTAAAGCCACACAGCGAAGT 59.930 47.619 0.00 0.00 38.01 3.01
2110 2176 1.195448 CTAAAGCCACACAGCGAAGTG 59.805 52.381 6.18 6.18 44.93 3.16
2118 2184 2.134201 CACAGCGAAGTGTACACAGA 57.866 50.000 27.06 0.00 34.83 3.41
2119 2185 2.469826 CACAGCGAAGTGTACACAGAA 58.530 47.619 27.06 0.00 34.83 3.02
2120 2186 2.472861 CACAGCGAAGTGTACACAGAAG 59.527 50.000 27.06 15.68 34.83 2.85
2121 2187 2.100916 ACAGCGAAGTGTACACAGAAGT 59.899 45.455 27.06 14.29 0.00 3.01
2122 2188 3.317149 ACAGCGAAGTGTACACAGAAGTA 59.683 43.478 27.06 0.00 0.00 2.24
2123 2189 3.669122 CAGCGAAGTGTACACAGAAGTAC 59.331 47.826 27.06 9.93 43.58 2.73
2124 2190 2.985139 GCGAAGTGTACACAGAAGTACC 59.015 50.000 27.06 6.38 42.84 3.34
2125 2191 3.231965 CGAAGTGTACACAGAAGTACCG 58.768 50.000 27.06 13.41 42.84 4.02
2126 2192 3.572584 GAAGTGTACACAGAAGTACCGG 58.427 50.000 27.06 0.00 42.84 5.28
2127 2193 2.867624 AGTGTACACAGAAGTACCGGA 58.132 47.619 27.06 0.00 42.84 5.14
2128 2194 2.818432 AGTGTACACAGAAGTACCGGAG 59.182 50.000 27.06 0.00 42.84 4.63
2129 2195 2.816087 GTGTACACAGAAGTACCGGAGA 59.184 50.000 21.14 0.00 42.84 3.71
2130 2196 2.816087 TGTACACAGAAGTACCGGAGAC 59.184 50.000 9.46 5.68 42.84 3.36
2150 2216 8.475331 GGAGACGTTAGATCAATCAAACTAAA 57.525 34.615 0.00 0.00 0.00 1.85
2151 2217 9.099454 GGAGACGTTAGATCAATCAAACTAAAT 57.901 33.333 0.00 0.00 0.00 1.40
2182 2248 9.253832 TCCAACAATCAATATTACATTCAAGGT 57.746 29.630 0.00 0.00 0.00 3.50
2183 2249 9.520204 CCAACAATCAATATTACATTCAAGGTC 57.480 33.333 0.00 0.00 0.00 3.85
2186 2252 8.408601 ACAATCAATATTACATTCAAGGTCTGC 58.591 33.333 0.00 0.00 0.00 4.26
2187 2253 6.942532 TCAATATTACATTCAAGGTCTGCC 57.057 37.500 0.00 0.00 0.00 4.85
2188 2254 6.422333 TCAATATTACATTCAAGGTCTGCCA 58.578 36.000 0.00 0.00 37.19 4.92
2189 2255 6.318648 TCAATATTACATTCAAGGTCTGCCAC 59.681 38.462 0.00 0.00 37.19 5.01
2190 2256 3.500448 TTACATTCAAGGTCTGCCACA 57.500 42.857 0.00 0.00 37.19 4.17
2191 2257 1.609208 ACATTCAAGGTCTGCCACAC 58.391 50.000 0.00 0.00 37.19 3.82
2192 2258 1.133823 ACATTCAAGGTCTGCCACACA 60.134 47.619 0.00 0.00 37.19 3.72
2193 2259 1.955778 CATTCAAGGTCTGCCACACAA 59.044 47.619 0.00 0.00 37.19 3.33
2194 2260 2.136298 TTCAAGGTCTGCCACACAAA 57.864 45.000 0.00 0.00 37.19 2.83
2195 2261 1.388547 TCAAGGTCTGCCACACAAAC 58.611 50.000 0.00 0.00 37.19 2.93
2196 2262 1.064758 TCAAGGTCTGCCACACAAACT 60.065 47.619 0.00 0.00 37.19 2.66
2197 2263 2.171659 TCAAGGTCTGCCACACAAACTA 59.828 45.455 0.00 0.00 37.19 2.24
2198 2264 2.948979 CAAGGTCTGCCACACAAACTAA 59.051 45.455 0.00 0.00 37.19 2.24
2199 2265 2.572290 AGGTCTGCCACACAAACTAAC 58.428 47.619 0.00 0.00 37.19 2.34
2200 2266 1.263217 GGTCTGCCACACAAACTAACG 59.737 52.381 0.00 0.00 34.09 3.18
2201 2267 0.941542 TCTGCCACACAAACTAACGC 59.058 50.000 0.00 0.00 0.00 4.84
2202 2268 0.944386 CTGCCACACAAACTAACGCT 59.056 50.000 0.00 0.00 0.00 5.07
2203 2269 0.941542 TGCCACACAAACTAACGCTC 59.058 50.000 0.00 0.00 0.00 5.03
2204 2270 0.237498 GCCACACAAACTAACGCTCC 59.763 55.000 0.00 0.00 0.00 4.70
2205 2271 1.588674 CCACACAAACTAACGCTCCA 58.411 50.000 0.00 0.00 0.00 3.86
2206 2272 1.531149 CCACACAAACTAACGCTCCAG 59.469 52.381 0.00 0.00 0.00 3.86
2207 2273 2.479837 CACACAAACTAACGCTCCAGA 58.520 47.619 0.00 0.00 0.00 3.86
2208 2274 3.067106 CACACAAACTAACGCTCCAGAT 58.933 45.455 0.00 0.00 0.00 2.90
2209 2275 3.498397 CACACAAACTAACGCTCCAGATT 59.502 43.478 0.00 0.00 0.00 2.40
2210 2276 4.688879 CACACAAACTAACGCTCCAGATTA 59.311 41.667 0.00 0.00 0.00 1.75
2211 2277 5.178623 CACACAAACTAACGCTCCAGATTAA 59.821 40.000 0.00 0.00 0.00 1.40
2212 2278 5.761234 ACACAAACTAACGCTCCAGATTAAA 59.239 36.000 0.00 0.00 0.00 1.52
2213 2279 6.430000 ACACAAACTAACGCTCCAGATTAAAT 59.570 34.615 0.00 0.00 0.00 1.40
2214 2280 6.742718 CACAAACTAACGCTCCAGATTAAATG 59.257 38.462 0.00 0.00 0.00 2.32
2215 2281 6.430000 ACAAACTAACGCTCCAGATTAAATGT 59.570 34.615 0.00 0.00 0.00 2.71
2216 2282 7.040686 ACAAACTAACGCTCCAGATTAAATGTT 60.041 33.333 0.00 0.00 0.00 2.71
2217 2283 6.663944 ACTAACGCTCCAGATTAAATGTTC 57.336 37.500 0.00 0.00 0.00 3.18
2218 2284 6.407202 ACTAACGCTCCAGATTAAATGTTCT 58.593 36.000 0.00 0.00 0.00 3.01
2219 2285 5.551760 AACGCTCCAGATTAAATGTTCTG 57.448 39.130 0.00 0.00 39.25 3.02
2220 2286 3.375299 ACGCTCCAGATTAAATGTTCTGC 59.625 43.478 0.00 0.00 38.41 4.26
2221 2287 3.242870 CGCTCCAGATTAAATGTTCTGCC 60.243 47.826 0.00 0.00 38.41 4.85
2222 2288 3.696051 GCTCCAGATTAAATGTTCTGCCA 59.304 43.478 0.00 0.00 38.41 4.92
2223 2289 4.201990 GCTCCAGATTAAATGTTCTGCCAG 60.202 45.833 0.00 0.00 38.41 4.85
2224 2290 4.272489 TCCAGATTAAATGTTCTGCCAGG 58.728 43.478 0.00 0.00 38.41 4.45
2225 2291 3.181483 CCAGATTAAATGTTCTGCCAGGC 60.181 47.826 3.66 3.66 38.41 4.85
2226 2292 3.444742 CAGATTAAATGTTCTGCCAGGCA 59.555 43.478 15.23 15.23 33.56 4.75
2237 2303 4.351054 CCAGGCAGACCACCCCAC 62.351 72.222 0.00 0.00 39.06 4.61
2238 2304 4.704833 CAGGCAGACCACCCCACG 62.705 72.222 0.00 0.00 39.06 4.94
2242 2308 3.941188 CAGACCACCCCACGCACT 61.941 66.667 0.00 0.00 0.00 4.40
2243 2309 3.168528 AGACCACCCCACGCACTT 61.169 61.111 0.00 0.00 0.00 3.16
2244 2310 2.668550 GACCACCCCACGCACTTC 60.669 66.667 0.00 0.00 0.00 3.01
2245 2311 4.265056 ACCACCCCACGCACTTCC 62.265 66.667 0.00 0.00 0.00 3.46
2246 2312 3.953775 CCACCCCACGCACTTCCT 61.954 66.667 0.00 0.00 0.00 3.36
2247 2313 2.669569 CACCCCACGCACTTCCTG 60.670 66.667 0.00 0.00 0.00 3.86
2248 2314 4.643387 ACCCCACGCACTTCCTGC 62.643 66.667 0.00 0.00 43.21 4.85
2252 2318 4.335647 CACGCACTTCCTGCCCCT 62.336 66.667 0.00 0.00 43.84 4.79
2253 2319 4.021925 ACGCACTTCCTGCCCCTC 62.022 66.667 0.00 0.00 43.84 4.30
2254 2320 4.785453 CGCACTTCCTGCCCCTCC 62.785 72.222 0.00 0.00 43.84 4.30
2255 2321 4.785453 GCACTTCCTGCCCCTCCG 62.785 72.222 0.00 0.00 40.42 4.63
2256 2322 4.785453 CACTTCCTGCCCCTCCGC 62.785 72.222 0.00 0.00 0.00 5.54
2258 2324 4.785453 CTTCCTGCCCCTCCGCAC 62.785 72.222 0.00 0.00 34.35 5.34
2265 2331 3.814268 CCCCTCCGCACGCATTTG 61.814 66.667 0.00 0.00 0.00 2.32
2266 2332 2.745884 CCCTCCGCACGCATTTGA 60.746 61.111 0.00 0.00 0.00 2.69
2267 2333 2.331893 CCCTCCGCACGCATTTGAA 61.332 57.895 0.00 0.00 0.00 2.69
2268 2334 1.154225 CCTCCGCACGCATTTGAAC 60.154 57.895 0.00 0.00 0.00 3.18
2269 2335 1.154225 CTCCGCACGCATTTGAACC 60.154 57.895 0.00 0.00 0.00 3.62
2270 2336 2.126502 CCGCACGCATTTGAACCC 60.127 61.111 0.00 0.00 0.00 4.11
2271 2337 2.642129 CGCACGCATTTGAACCCA 59.358 55.556 0.00 0.00 0.00 4.51
2272 2338 1.007964 CGCACGCATTTGAACCCAA 60.008 52.632 0.00 0.00 0.00 4.12
2273 2339 1.274798 CGCACGCATTTGAACCCAAC 61.275 55.000 0.00 0.00 30.88 3.77
2274 2340 0.249238 GCACGCATTTGAACCCAACA 60.249 50.000 0.00 0.00 30.88 3.33
2275 2341 1.804372 GCACGCATTTGAACCCAACAA 60.804 47.619 0.00 0.00 30.88 2.83
2276 2342 2.544685 CACGCATTTGAACCCAACAAA 58.455 42.857 0.00 0.00 40.62 2.83
2277 2343 3.129871 CACGCATTTGAACCCAACAAAT 58.870 40.909 0.00 0.00 45.05 2.32
2278 2344 3.559242 CACGCATTTGAACCCAACAAATT 59.441 39.130 0.00 0.00 43.22 1.82
2279 2345 4.747108 CACGCATTTGAACCCAACAAATTA 59.253 37.500 0.00 0.00 43.22 1.40
2280 2346 5.407995 CACGCATTTGAACCCAACAAATTAT 59.592 36.000 0.00 0.00 43.22 1.28
2281 2347 5.637387 ACGCATTTGAACCCAACAAATTATC 59.363 36.000 0.00 0.00 43.22 1.75
2282 2348 5.063312 CGCATTTGAACCCAACAAATTATCC 59.937 40.000 0.00 0.00 43.22 2.59
2283 2349 5.936956 GCATTTGAACCCAACAAATTATCCA 59.063 36.000 0.00 0.00 43.22 3.41
2284 2350 6.128309 GCATTTGAACCCAACAAATTATCCAC 60.128 38.462 0.00 0.00 43.22 4.02
2285 2351 6.739331 TTTGAACCCAACAAATTATCCACT 57.261 33.333 0.00 0.00 33.25 4.00
2286 2352 5.720371 TGAACCCAACAAATTATCCACTG 57.280 39.130 0.00 0.00 0.00 3.66
2287 2353 4.021544 TGAACCCAACAAATTATCCACTGC 60.022 41.667 0.00 0.00 0.00 4.40
2288 2354 2.831526 ACCCAACAAATTATCCACTGCC 59.168 45.455 0.00 0.00 0.00 4.85
2289 2355 2.168313 CCCAACAAATTATCCACTGCCC 59.832 50.000 0.00 0.00 0.00 5.36
2290 2356 2.168313 CCAACAAATTATCCACTGCCCC 59.832 50.000 0.00 0.00 0.00 5.80
2291 2357 2.830923 CAACAAATTATCCACTGCCCCA 59.169 45.455 0.00 0.00 0.00 4.96
2292 2358 3.182887 ACAAATTATCCACTGCCCCAA 57.817 42.857 0.00 0.00 0.00 4.12
2293 2359 3.723325 ACAAATTATCCACTGCCCCAAT 58.277 40.909 0.00 0.00 0.00 3.16
2294 2360 3.451902 ACAAATTATCCACTGCCCCAATG 59.548 43.478 0.00 0.00 0.00 2.82
2295 2361 2.386829 ATTATCCACTGCCCCAATGG 57.613 50.000 0.00 0.00 34.58 3.16
2312 2378 3.443925 GCGCCCCTGCCTTTCTTC 61.444 66.667 0.00 0.00 0.00 2.87
2313 2379 2.751837 CGCCCCTGCCTTTCTTCC 60.752 66.667 0.00 0.00 0.00 3.46
2314 2380 2.363018 GCCCCTGCCTTTCTTCCC 60.363 66.667 0.00 0.00 0.00 3.97
2315 2381 2.360585 CCCCTGCCTTTCTTCCCC 59.639 66.667 0.00 0.00 0.00 4.81
2316 2382 2.547595 CCCCTGCCTTTCTTCCCCA 61.548 63.158 0.00 0.00 0.00 4.96
2317 2383 1.304464 CCCTGCCTTTCTTCCCCAC 60.304 63.158 0.00 0.00 0.00 4.61
2318 2384 1.304464 CCTGCCTTTCTTCCCCACC 60.304 63.158 0.00 0.00 0.00 4.61
2319 2385 1.675641 CTGCCTTTCTTCCCCACCG 60.676 63.158 0.00 0.00 0.00 4.94
2320 2386 3.062466 GCCTTTCTTCCCCACCGC 61.062 66.667 0.00 0.00 0.00 5.68
2321 2387 2.757077 CCTTTCTTCCCCACCGCT 59.243 61.111 0.00 0.00 0.00 5.52
2322 2388 1.988015 CCTTTCTTCCCCACCGCTA 59.012 57.895 0.00 0.00 0.00 4.26
2323 2389 0.546598 CCTTTCTTCCCCACCGCTAT 59.453 55.000 0.00 0.00 0.00 2.97
2324 2390 1.668419 CTTTCTTCCCCACCGCTATG 58.332 55.000 0.00 0.00 0.00 2.23
2325 2391 0.393808 TTTCTTCCCCACCGCTATGC 60.394 55.000 0.00 0.00 0.00 3.14
2326 2392 1.271840 TTCTTCCCCACCGCTATGCT 61.272 55.000 0.00 0.00 0.00 3.79
2327 2393 1.227674 CTTCCCCACCGCTATGCTC 60.228 63.158 0.00 0.00 0.00 4.26
2328 2394 2.666596 CTTCCCCACCGCTATGCTCC 62.667 65.000 0.00 0.00 0.00 4.70
2329 2395 4.256180 CCCCACCGCTATGCTCCC 62.256 72.222 0.00 0.00 0.00 4.30
2330 2396 4.256180 CCCACCGCTATGCTCCCC 62.256 72.222 0.00 0.00 0.00 4.81
2331 2397 3.164269 CCACCGCTATGCTCCCCT 61.164 66.667 0.00 0.00 0.00 4.79
2332 2398 2.423446 CACCGCTATGCTCCCCTC 59.577 66.667 0.00 0.00 0.00 4.30
2333 2399 2.136878 CACCGCTATGCTCCCCTCT 61.137 63.158 0.00 0.00 0.00 3.69
2334 2400 1.834822 ACCGCTATGCTCCCCTCTC 60.835 63.158 0.00 0.00 0.00 3.20
2335 2401 2.578714 CCGCTATGCTCCCCTCTCC 61.579 68.421 0.00 0.00 0.00 3.71
2336 2402 2.578714 CGCTATGCTCCCCTCTCCC 61.579 68.421 0.00 0.00 0.00 4.30
2337 2403 2.220586 GCTATGCTCCCCTCTCCCC 61.221 68.421 0.00 0.00 0.00 4.81
2338 2404 1.237163 CTATGCTCCCCTCTCCCCA 59.763 63.158 0.00 0.00 0.00 4.96
2339 2405 1.074471 TATGCTCCCCTCTCCCCAC 60.074 63.158 0.00 0.00 0.00 4.61
2340 2406 2.946988 TATGCTCCCCTCTCCCCACG 62.947 65.000 0.00 0.00 0.00 4.94
2342 2408 4.075793 CTCCCCTCTCCCCACGGA 62.076 72.222 0.00 0.00 36.45 4.69
2343 2409 4.393778 TCCCCTCTCCCCACGGAC 62.394 72.222 0.00 0.00 33.32 4.79
2358 2424 4.154347 GACGCCTCCCAGCCTCTG 62.154 72.222 0.00 0.00 0.00 3.35
2389 2455 4.570663 CGACGGACGCCATCCCTC 62.571 72.222 0.00 0.00 46.04 4.30
2390 2456 4.222847 GACGGACGCCATCCCTCC 62.223 72.222 0.00 0.00 46.04 4.30
2394 2460 2.122989 GACGCCATCCCTCCCCTA 60.123 66.667 0.00 0.00 0.00 3.53
2395 2461 1.536662 GACGCCATCCCTCCCCTAT 60.537 63.158 0.00 0.00 0.00 2.57
2396 2462 1.073706 ACGCCATCCCTCCCCTATT 60.074 57.895 0.00 0.00 0.00 1.73
2397 2463 0.697854 ACGCCATCCCTCCCCTATTT 60.698 55.000 0.00 0.00 0.00 1.40
2398 2464 0.036875 CGCCATCCCTCCCCTATTTC 59.963 60.000 0.00 0.00 0.00 2.17
2399 2465 0.405973 GCCATCCCTCCCCTATTTCC 59.594 60.000 0.00 0.00 0.00 3.13
2400 2466 1.076438 CCATCCCTCCCCTATTTCCC 58.924 60.000 0.00 0.00 0.00 3.97
2401 2467 1.418109 CCATCCCTCCCCTATTTCCCT 60.418 57.143 0.00 0.00 0.00 4.20
2402 2468 1.988846 CATCCCTCCCCTATTTCCCTC 59.011 57.143 0.00 0.00 0.00 4.30
2403 2469 1.340502 TCCCTCCCCTATTTCCCTCT 58.659 55.000 0.00 0.00 0.00 3.69
2404 2470 1.662623 TCCCTCCCCTATTTCCCTCTT 59.337 52.381 0.00 0.00 0.00 2.85
2405 2471 2.058705 CCCTCCCCTATTTCCCTCTTC 58.941 57.143 0.00 0.00 0.00 2.87
2406 2472 2.632360 CCCTCCCCTATTTCCCTCTTCA 60.632 54.545 0.00 0.00 0.00 3.02
2407 2473 2.439880 CCTCCCCTATTTCCCTCTTCAC 59.560 54.545 0.00 0.00 0.00 3.18
2408 2474 2.439880 CTCCCCTATTTCCCTCTTCACC 59.560 54.545 0.00 0.00 0.00 4.02
2409 2475 2.047296 TCCCCTATTTCCCTCTTCACCT 59.953 50.000 0.00 0.00 0.00 4.00
2410 2476 2.439880 CCCCTATTTCCCTCTTCACCTC 59.560 54.545 0.00 0.00 0.00 3.85
2411 2477 2.439880 CCCTATTTCCCTCTTCACCTCC 59.560 54.545 0.00 0.00 0.00 4.30
2412 2478 3.115390 CCTATTTCCCTCTTCACCTCCA 58.885 50.000 0.00 0.00 0.00 3.86
2413 2479 3.118223 CCTATTTCCCTCTTCACCTCCAC 60.118 52.174 0.00 0.00 0.00 4.02
2414 2480 0.685097 TTTCCCTCTTCACCTCCACG 59.315 55.000 0.00 0.00 0.00 4.94
2415 2481 1.192146 TTCCCTCTTCACCTCCACGG 61.192 60.000 0.00 0.00 39.35 4.94
2416 2482 2.266055 CCTCTTCACCTCCACGGC 59.734 66.667 0.00 0.00 35.61 5.68
2417 2483 2.266055 CTCTTCACCTCCACGGCC 59.734 66.667 0.00 0.00 35.61 6.13
2418 2484 2.525629 TCTTCACCTCCACGGCCA 60.526 61.111 2.24 0.00 35.61 5.36
2419 2485 2.358737 CTTCACCTCCACGGCCAC 60.359 66.667 2.24 0.00 35.61 5.01
2455 2521 3.849951 CCCCACTGCGGTCGCTAT 61.850 66.667 16.36 1.73 42.51 2.97
2456 2522 2.586079 CCCACTGCGGTCGCTATG 60.586 66.667 16.36 13.18 42.51 2.23
2457 2523 2.494445 CCACTGCGGTCGCTATGA 59.506 61.111 16.36 0.00 42.51 2.15
2458 2524 1.068083 CCACTGCGGTCGCTATGAT 59.932 57.895 16.36 0.00 42.51 2.45
2459 2525 0.941463 CCACTGCGGTCGCTATGATC 60.941 60.000 16.36 0.00 42.51 2.92
2460 2526 0.941463 CACTGCGGTCGCTATGATCC 60.941 60.000 16.36 0.00 42.51 3.36
2461 2527 1.730902 CTGCGGTCGCTATGATCCG 60.731 63.158 16.36 0.00 41.34 4.18
2463 2529 2.430921 CGGTCGCTATGATCCGCC 60.431 66.667 0.00 0.00 35.53 6.13
2464 2530 2.430921 GGTCGCTATGATCCGCCG 60.431 66.667 0.00 0.00 0.00 6.46
2465 2531 3.106407 GTCGCTATGATCCGCCGC 61.106 66.667 0.00 0.00 0.00 6.53
2466 2532 4.700365 TCGCTATGATCCGCCGCG 62.700 66.667 5.59 5.59 44.63 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.262950 CGAACCTGCATGTGTCGAAAA 59.737 47.619 15.87 0.00 0.00 2.29
1 2 0.865111 CGAACCTGCATGTGTCGAAA 59.135 50.000 15.87 0.00 0.00 3.46
2 3 0.249699 ACGAACCTGCATGTGTCGAA 60.250 50.000 22.70 0.00 0.00 3.71
3 4 0.249699 AACGAACCTGCATGTGTCGA 60.250 50.000 22.70 0.00 0.00 4.20
4 5 0.163788 GAACGAACCTGCATGTGTCG 59.836 55.000 17.85 17.85 0.00 4.35
5 6 1.225855 TGAACGAACCTGCATGTGTC 58.774 50.000 0.00 0.00 0.00 3.67
6 7 1.806542 GATGAACGAACCTGCATGTGT 59.193 47.619 0.00 0.00 0.00 3.72
7 8 1.131126 GGATGAACGAACCTGCATGTG 59.869 52.381 0.00 0.00 0.00 3.21
8 9 1.271325 TGGATGAACGAACCTGCATGT 60.271 47.619 0.00 0.00 0.00 3.21
9 10 1.399440 CTGGATGAACGAACCTGCATG 59.601 52.381 0.00 0.00 0.00 4.06
10 11 1.278985 TCTGGATGAACGAACCTGCAT 59.721 47.619 0.00 0.00 0.00 3.96
11 12 0.684535 TCTGGATGAACGAACCTGCA 59.315 50.000 0.00 0.00 0.00 4.41
12 13 1.464997 GTTCTGGATGAACGAACCTGC 59.535 52.381 0.00 0.00 44.49 4.85
21 22 2.559698 TTTGAGCGGTTCTGGATGAA 57.440 45.000 0.00 0.00 0.00 2.57
22 23 2.559698 TTTTGAGCGGTTCTGGATGA 57.440 45.000 0.00 0.00 0.00 2.92
23 24 2.223112 CGATTTTGAGCGGTTCTGGATG 60.223 50.000 0.00 0.00 0.00 3.51
24 25 2.009774 CGATTTTGAGCGGTTCTGGAT 58.990 47.619 0.00 0.00 0.00 3.41
25 26 1.270625 ACGATTTTGAGCGGTTCTGGA 60.271 47.619 0.00 0.00 0.00 3.86
26 27 1.156736 ACGATTTTGAGCGGTTCTGG 58.843 50.000 0.00 0.00 0.00 3.86
27 28 4.398549 TTTACGATTTTGAGCGGTTCTG 57.601 40.909 0.00 0.00 0.00 3.02
28 29 4.454504 ACATTTACGATTTTGAGCGGTTCT 59.545 37.500 0.00 0.00 0.00 3.01
29 30 4.553429 CACATTTACGATTTTGAGCGGTTC 59.447 41.667 0.00 0.00 0.00 3.62
30 31 4.472286 CACATTTACGATTTTGAGCGGTT 58.528 39.130 0.00 0.00 0.00 4.44
31 32 3.669557 GCACATTTACGATTTTGAGCGGT 60.670 43.478 0.00 0.00 0.00 5.68
32 33 2.845967 GCACATTTACGATTTTGAGCGG 59.154 45.455 0.00 0.00 0.00 5.52
33 34 3.297979 GTGCACATTTACGATTTTGAGCG 59.702 43.478 13.17 0.00 0.00 5.03
34 35 4.475944 AGTGCACATTTACGATTTTGAGC 58.524 39.130 21.04 0.00 0.00 4.26
35 36 5.931532 AGAGTGCACATTTACGATTTTGAG 58.068 37.500 21.04 0.00 0.00 3.02
36 37 5.700832 AGAGAGTGCACATTTACGATTTTGA 59.299 36.000 21.04 0.00 0.00 2.69
37 38 5.931532 AGAGAGTGCACATTTACGATTTTG 58.068 37.500 21.04 0.00 0.00 2.44
38 39 6.560253 AAGAGAGTGCACATTTACGATTTT 57.440 33.333 21.04 0.00 0.00 1.82
39 40 7.849804 ATAAGAGAGTGCACATTTACGATTT 57.150 32.000 21.04 3.42 0.00 2.17
40 41 8.198109 AGTATAAGAGAGTGCACATTTACGATT 58.802 33.333 21.04 5.15 0.00 3.34
41 42 7.717568 AGTATAAGAGAGTGCACATTTACGAT 58.282 34.615 21.04 6.46 0.00 3.73
42 43 7.096884 AGTATAAGAGAGTGCACATTTACGA 57.903 36.000 21.04 0.00 0.00 3.43
43 44 6.418226 GGAGTATAAGAGAGTGCACATTTACG 59.582 42.308 21.04 0.00 0.00 3.18
44 45 6.702282 GGGAGTATAAGAGAGTGCACATTTAC 59.298 42.308 21.04 10.16 0.00 2.01
45 46 6.611642 AGGGAGTATAAGAGAGTGCACATTTA 59.388 38.462 21.04 11.55 0.00 1.40
46 47 5.426833 AGGGAGTATAAGAGAGTGCACATTT 59.573 40.000 21.04 9.71 0.00 2.32
47 48 4.965532 AGGGAGTATAAGAGAGTGCACATT 59.034 41.667 21.04 6.17 0.00 2.71
48 49 4.551671 AGGGAGTATAAGAGAGTGCACAT 58.448 43.478 21.04 7.00 0.00 3.21
49 50 3.954904 GAGGGAGTATAAGAGAGTGCACA 59.045 47.826 21.04 0.00 0.00 4.57
50 51 3.319689 GGAGGGAGTATAAGAGAGTGCAC 59.680 52.174 9.40 9.40 0.00 4.57
51 52 3.567397 GGAGGGAGTATAAGAGAGTGCA 58.433 50.000 0.00 0.00 0.00 4.57
52 53 2.554893 CGGAGGGAGTATAAGAGAGTGC 59.445 54.545 0.00 0.00 0.00 4.40
53 54 3.816523 GACGGAGGGAGTATAAGAGAGTG 59.183 52.174 0.00 0.00 0.00 3.51
54 55 3.181441 GGACGGAGGGAGTATAAGAGAGT 60.181 52.174 0.00 0.00 0.00 3.24
55 56 3.073356 AGGACGGAGGGAGTATAAGAGAG 59.927 52.174 0.00 0.00 0.00 3.20
56 57 3.054576 AGGACGGAGGGAGTATAAGAGA 58.945 50.000 0.00 0.00 0.00 3.10
57 58 3.512219 AGGACGGAGGGAGTATAAGAG 57.488 52.381 0.00 0.00 0.00 2.85
58 59 3.967467 AAGGACGGAGGGAGTATAAGA 57.033 47.619 0.00 0.00 0.00 2.10
59 60 6.475596 TTTAAAGGACGGAGGGAGTATAAG 57.524 41.667 0.00 0.00 0.00 1.73
60 61 6.872585 TTTTAAAGGACGGAGGGAGTATAA 57.127 37.500 0.00 0.00 0.00 0.98
61 62 6.441604 ACTTTTTAAAGGACGGAGGGAGTATA 59.558 38.462 7.12 0.00 40.31 1.47
62 63 5.250082 ACTTTTTAAAGGACGGAGGGAGTAT 59.750 40.000 7.12 0.00 40.31 2.12
63 64 4.594491 ACTTTTTAAAGGACGGAGGGAGTA 59.406 41.667 7.12 0.00 40.31 2.59
64 65 3.393609 ACTTTTTAAAGGACGGAGGGAGT 59.606 43.478 7.12 0.00 40.31 3.85
65 66 3.751698 CACTTTTTAAAGGACGGAGGGAG 59.248 47.826 7.12 0.00 40.31 4.30
66 67 3.136992 ACACTTTTTAAAGGACGGAGGGA 59.863 43.478 7.12 0.00 40.31 4.20
67 68 3.483421 ACACTTTTTAAAGGACGGAGGG 58.517 45.455 7.12 0.00 40.31 4.30
68 69 5.303165 AGTACACTTTTTAAAGGACGGAGG 58.697 41.667 7.12 0.00 40.31 4.30
69 70 6.856135 AAGTACACTTTTTAAAGGACGGAG 57.144 37.500 7.12 0.00 40.31 4.63
70 71 6.822676 TGAAAGTACACTTTTTAAAGGACGGA 59.177 34.615 8.66 0.00 45.37 4.69
71 72 7.018635 TGAAAGTACACTTTTTAAAGGACGG 57.981 36.000 8.66 0.00 45.37 4.79
72 73 9.511144 AATTGAAAGTACACTTTTTAAAGGACG 57.489 29.630 8.66 0.00 45.37 4.79
83 84 8.527810 TCCTTCAACAAAATTGAAAGTACACTT 58.472 29.630 0.00 0.00 37.89 3.16
84 85 8.062065 TCCTTCAACAAAATTGAAAGTACACT 57.938 30.769 0.00 0.00 37.89 3.55
85 86 8.871686 ATCCTTCAACAAAATTGAAAGTACAC 57.128 30.769 0.00 0.00 37.89 2.90
86 87 8.690884 TGATCCTTCAACAAAATTGAAAGTACA 58.309 29.630 0.00 1.58 37.89 2.90
87 88 9.528018 TTGATCCTTCAACAAAATTGAAAGTAC 57.472 29.630 0.00 0.00 36.94 2.73
89 90 8.882736 GTTTGATCCTTCAACAAAATTGAAAGT 58.117 29.630 0.00 0.00 41.50 2.66
90 91 9.101655 AGTTTGATCCTTCAACAAAATTGAAAG 57.898 29.630 0.00 0.00 41.50 2.62
93 94 9.912634 GATAGTTTGATCCTTCAACAAAATTGA 57.087 29.630 0.00 0.00 41.50 2.57
94 95 9.918630 AGATAGTTTGATCCTTCAACAAAATTG 57.081 29.630 0.00 0.00 41.50 2.32
100 101 9.793259 ACTTTAAGATAGTTTGATCCTTCAACA 57.207 29.630 0.00 0.00 41.50 3.33
112 113 6.301486 ACCCGGTCAAACTTTAAGATAGTTT 58.699 36.000 0.00 0.00 44.38 2.66
113 114 5.872963 ACCCGGTCAAACTTTAAGATAGTT 58.127 37.500 0.00 0.00 37.43 2.24
114 115 5.494390 ACCCGGTCAAACTTTAAGATAGT 57.506 39.130 0.00 0.00 0.00 2.12
115 116 6.206048 ACAAACCCGGTCAAACTTTAAGATAG 59.794 38.462 0.00 0.00 0.00 2.08
116 117 6.016943 CACAAACCCGGTCAAACTTTAAGATA 60.017 38.462 0.00 0.00 0.00 1.98
117 118 4.891168 ACAAACCCGGTCAAACTTTAAGAT 59.109 37.500 0.00 0.00 0.00 2.40
118 119 4.096682 CACAAACCCGGTCAAACTTTAAGA 59.903 41.667 0.00 0.00 0.00 2.10
119 120 4.356289 CACAAACCCGGTCAAACTTTAAG 58.644 43.478 0.00 0.00 0.00 1.85
120 121 3.429135 GCACAAACCCGGTCAAACTTTAA 60.429 43.478 0.00 0.00 0.00 1.52
121 122 2.099427 GCACAAACCCGGTCAAACTTTA 59.901 45.455 0.00 0.00 0.00 1.85
122 123 1.134936 GCACAAACCCGGTCAAACTTT 60.135 47.619 0.00 0.00 0.00 2.66
123 124 0.458260 GCACAAACCCGGTCAAACTT 59.542 50.000 0.00 0.00 0.00 2.66
124 125 0.681564 TGCACAAACCCGGTCAAACT 60.682 50.000 0.00 0.00 0.00 2.66
125 126 0.173708 TTGCACAAACCCGGTCAAAC 59.826 50.000 0.00 0.00 0.00 2.93
126 127 0.895530 TTTGCACAAACCCGGTCAAA 59.104 45.000 0.00 0.00 0.00 2.69
127 128 0.895530 TTTTGCACAAACCCGGTCAA 59.104 45.000 0.00 0.00 0.00 3.18
128 129 0.895530 TTTTTGCACAAACCCGGTCA 59.104 45.000 0.00 0.00 0.00 4.02
129 130 2.232756 ATTTTTGCACAAACCCGGTC 57.767 45.000 0.00 0.00 0.00 4.79
130 131 5.669164 ATATATTTTTGCACAAACCCGGT 57.331 34.783 0.00 0.00 0.00 5.28
131 132 8.547069 CATTAATATATTTTTGCACAAACCCGG 58.453 33.333 2.68 0.00 0.00 5.73
132 133 9.092876 ACATTAATATATTTTTGCACAAACCCG 57.907 29.630 2.68 0.00 0.00 5.28
150 151 9.030452 ACCTATTTGGCTTCACAAACATTAATA 57.970 29.630 0.00 0.00 42.51 0.98
151 152 7.906327 ACCTATTTGGCTTCACAAACATTAAT 58.094 30.769 0.00 0.00 42.51 1.40
152 153 7.296628 ACCTATTTGGCTTCACAAACATTAA 57.703 32.000 0.00 0.00 42.51 1.40
153 154 6.909550 ACCTATTTGGCTTCACAAACATTA 57.090 33.333 0.00 0.00 42.51 1.90
154 155 5.806654 ACCTATTTGGCTTCACAAACATT 57.193 34.783 0.00 0.00 42.51 2.71
155 156 8.632679 CATATACCTATTTGGCTTCACAAACAT 58.367 33.333 0.00 0.00 42.51 2.71
156 157 7.831690 TCATATACCTATTTGGCTTCACAAACA 59.168 33.333 0.00 0.00 42.51 2.83
157 158 8.220755 TCATATACCTATTTGGCTTCACAAAC 57.779 34.615 0.00 0.00 42.51 2.93
158 159 8.849168 CATCATATACCTATTTGGCTTCACAAA 58.151 33.333 0.00 0.00 43.69 2.83
159 160 8.217111 TCATCATATACCTATTTGGCTTCACAA 58.783 33.333 0.00 0.00 40.22 3.33
160 161 7.744733 TCATCATATACCTATTTGGCTTCACA 58.255 34.615 0.00 0.00 40.22 3.58
161 162 8.621532 TTCATCATATACCTATTTGGCTTCAC 57.378 34.615 0.00 0.00 40.22 3.18
162 163 9.639563 TTTTCATCATATACCTATTTGGCTTCA 57.360 29.630 0.00 0.00 40.22 3.02
214 215 9.537192 CATCAACATTTATGCCATCAAATTAGT 57.463 29.630 0.00 0.00 0.00 2.24
215 216 9.537192 ACATCAACATTTATGCCATCAAATTAG 57.463 29.630 0.00 0.00 0.00 1.73
269 270 9.662545 CAACTTTGTTGAAAAGTCAAACATTTT 57.337 25.926 4.60 0.00 45.29 1.82
270 271 8.288913 CCAACTTTGTTGAAAAGTCAAACATTT 58.711 29.630 11.47 0.00 45.29 2.32
271 272 7.659390 TCCAACTTTGTTGAAAAGTCAAACATT 59.341 29.630 11.47 0.00 45.29 2.71
272 273 7.117667 GTCCAACTTTGTTGAAAAGTCAAACAT 59.882 33.333 11.47 0.00 45.29 2.71
273 274 6.422400 GTCCAACTTTGTTGAAAAGTCAAACA 59.578 34.615 11.47 0.00 45.29 2.83
274 275 6.399564 CGTCCAACTTTGTTGAAAAGTCAAAC 60.400 38.462 11.47 2.94 45.29 2.93
275 276 5.631512 CGTCCAACTTTGTTGAAAAGTCAAA 59.368 36.000 11.47 0.00 45.29 2.69
276 277 5.157781 CGTCCAACTTTGTTGAAAAGTCAA 58.842 37.500 11.47 0.00 41.57 3.18
277 278 4.216687 ACGTCCAACTTTGTTGAAAAGTCA 59.783 37.500 11.47 0.00 39.36 3.41
278 279 4.729595 ACGTCCAACTTTGTTGAAAAGTC 58.270 39.130 11.47 0.00 39.36 3.01
279 280 4.776795 ACGTCCAACTTTGTTGAAAAGT 57.223 36.364 11.47 0.00 41.82 2.66
280 281 5.510323 GTGTACGTCCAACTTTGTTGAAAAG 59.490 40.000 11.47 0.00 0.00 2.27
281 282 5.181622 AGTGTACGTCCAACTTTGTTGAAAA 59.818 36.000 11.47 0.00 0.00 2.29
282 283 4.696402 AGTGTACGTCCAACTTTGTTGAAA 59.304 37.500 11.47 0.00 0.00 2.69
283 284 4.255301 AGTGTACGTCCAACTTTGTTGAA 58.745 39.130 11.47 0.00 0.00 2.69
284 285 3.864243 AGTGTACGTCCAACTTTGTTGA 58.136 40.909 11.47 0.00 0.00 3.18
285 286 3.869246 AGAGTGTACGTCCAACTTTGTTG 59.131 43.478 0.00 3.69 0.00 3.33
286 287 4.133013 AGAGTGTACGTCCAACTTTGTT 57.867 40.909 0.00 0.00 0.00 2.83
287 288 3.814005 AGAGTGTACGTCCAACTTTGT 57.186 42.857 0.00 0.00 0.00 2.83
288 289 4.569162 TCAAAGAGTGTACGTCCAACTTTG 59.431 41.667 23.11 23.11 39.53 2.77
289 290 4.761975 TCAAAGAGTGTACGTCCAACTTT 58.238 39.130 0.00 0.00 0.00 2.66
290 291 4.395959 TCAAAGAGTGTACGTCCAACTT 57.604 40.909 0.00 0.00 0.00 2.66
291 292 4.395959 TTCAAAGAGTGTACGTCCAACT 57.604 40.909 0.00 0.00 0.00 3.16
292 293 4.807304 TCTTTCAAAGAGTGTACGTCCAAC 59.193 41.667 0.00 0.00 32.71 3.77
293 294 5.013568 TCTTTCAAAGAGTGTACGTCCAA 57.986 39.130 0.00 0.00 32.71 3.53
294 295 4.659111 TCTTTCAAAGAGTGTACGTCCA 57.341 40.909 0.00 0.00 32.71 4.02
295 296 4.389077 CCATCTTTCAAAGAGTGTACGTCC 59.611 45.833 5.94 0.00 41.61 4.79
296 297 5.227908 TCCATCTTTCAAAGAGTGTACGTC 58.772 41.667 5.94 0.00 41.61 4.34
297 298 5.209818 TCCATCTTTCAAAGAGTGTACGT 57.790 39.130 5.94 0.00 41.61 3.57
298 299 4.627467 CCTCCATCTTTCAAAGAGTGTACG 59.373 45.833 5.94 0.00 41.61 3.67
299 300 4.938226 CCCTCCATCTTTCAAAGAGTGTAC 59.062 45.833 5.94 0.00 41.61 2.90
300 301 4.019321 CCCCTCCATCTTTCAAAGAGTGTA 60.019 45.833 5.94 0.00 41.61 2.90
301 302 3.245052 CCCCTCCATCTTTCAAAGAGTGT 60.245 47.826 5.94 0.00 41.61 3.55
302 303 3.350833 CCCCTCCATCTTTCAAAGAGTG 58.649 50.000 5.94 4.61 41.61 3.51
303 304 2.310052 CCCCCTCCATCTTTCAAAGAGT 59.690 50.000 5.94 0.00 41.61 3.24
304 305 2.947695 GCCCCCTCCATCTTTCAAAGAG 60.948 54.545 5.94 0.00 41.61 2.85
305 306 1.005924 GCCCCCTCCATCTTTCAAAGA 59.994 52.381 1.30 1.30 42.69 2.52
306 307 1.272648 TGCCCCCTCCATCTTTCAAAG 60.273 52.381 0.00 0.00 0.00 2.77
307 308 0.783206 TGCCCCCTCCATCTTTCAAA 59.217 50.000 0.00 0.00 0.00 2.69
308 309 0.039618 GTGCCCCCTCCATCTTTCAA 59.960 55.000 0.00 0.00 0.00 2.69
309 310 0.846427 AGTGCCCCCTCCATCTTTCA 60.846 55.000 0.00 0.00 0.00 2.69
310 311 0.332972 AAGTGCCCCCTCCATCTTTC 59.667 55.000 0.00 0.00 0.00 2.62
311 312 0.332972 GAAGTGCCCCCTCCATCTTT 59.667 55.000 0.00 0.00 0.00 2.52
312 313 1.575447 GGAAGTGCCCCCTCCATCTT 61.575 60.000 0.00 0.00 0.00 2.40
313 314 2.003548 GGAAGTGCCCCCTCCATCT 61.004 63.158 0.00 0.00 0.00 2.90
314 315 1.575447 AAGGAAGTGCCCCCTCCATC 61.575 60.000 0.00 0.00 37.37 3.51
315 316 1.544917 AAGGAAGTGCCCCCTCCAT 60.545 57.895 0.00 0.00 37.37 3.41
316 317 2.121506 AAGGAAGTGCCCCCTCCA 60.122 61.111 0.00 0.00 37.37 3.86
317 318 2.677848 GAAGGAAGTGCCCCCTCC 59.322 66.667 0.00 0.00 37.37 4.30
318 319 2.269241 CGAAGGAAGTGCCCCCTC 59.731 66.667 0.00 0.00 37.37 4.30
319 320 4.035102 GCGAAGGAAGTGCCCCCT 62.035 66.667 0.00 0.00 37.37 4.79
324 325 0.393808 TTATGGGGCGAAGGAAGTGC 60.394 55.000 0.00 0.00 0.00 4.40
325 326 2.348411 ATTATGGGGCGAAGGAAGTG 57.652 50.000 0.00 0.00 0.00 3.16
326 327 4.398319 CAATATTATGGGGCGAAGGAAGT 58.602 43.478 0.00 0.00 0.00 3.01
327 328 3.191371 GCAATATTATGGGGCGAAGGAAG 59.809 47.826 0.00 0.00 0.00 3.46
328 329 3.153919 GCAATATTATGGGGCGAAGGAA 58.846 45.455 0.00 0.00 0.00 3.36
329 330 2.375174 AGCAATATTATGGGGCGAAGGA 59.625 45.455 0.00 0.00 0.00 3.36
330 331 2.795329 AGCAATATTATGGGGCGAAGG 58.205 47.619 0.00 0.00 0.00 3.46
331 332 3.820467 TCAAGCAATATTATGGGGCGAAG 59.180 43.478 0.00 0.00 0.00 3.79
332 333 3.826524 TCAAGCAATATTATGGGGCGAA 58.173 40.909 0.00 0.00 0.00 4.70
333 334 3.500448 TCAAGCAATATTATGGGGCGA 57.500 42.857 0.00 0.00 0.00 5.54
334 335 4.582701 TTTCAAGCAATATTATGGGGCG 57.417 40.909 0.00 0.00 0.00 6.13
335 336 8.150296 AGTATTTTTCAAGCAATATTATGGGGC 58.850 33.333 0.00 0.00 0.00 5.80
370 371 9.287373 CTCTTATATACTACTTCCTTCGTCCTT 57.713 37.037 0.00 0.00 0.00 3.36
371 372 8.658619 TCTCTTATATACTACTTCCTTCGTCCT 58.341 37.037 0.00 0.00 0.00 3.85
372 373 8.845413 TCTCTTATATACTACTTCCTTCGTCC 57.155 38.462 0.00 0.00 0.00 4.79
531 532 2.978010 CGGTTGGAGTTTGGCGCT 60.978 61.111 7.64 0.00 0.00 5.92
548 549 0.914417 TCCTTGTCCCACCCATCCTC 60.914 60.000 0.00 0.00 0.00 3.71
551 552 1.078426 CGTCCTTGTCCCACCCATC 60.078 63.158 0.00 0.00 0.00 3.51
556 557 0.391263 GTGATCCGTCCTTGTCCCAC 60.391 60.000 0.00 0.00 0.00 4.61
565 566 4.203076 CGGGGTCGTGATCCGTCC 62.203 72.222 9.99 9.99 43.01 4.79
572 573 4.367023 CGGCTTTCGGGGTCGTGA 62.367 66.667 0.00 0.00 37.69 4.35
573 574 3.869473 TTCGGCTTTCGGGGTCGTG 62.869 63.158 0.00 0.00 39.77 4.35
574 575 3.167822 TTTCGGCTTTCGGGGTCGT 62.168 57.895 0.00 0.00 39.77 4.34
582 583 2.474712 CGTCGGCTTTCGGCTTTC 59.525 61.111 0.00 0.00 42.07 2.62
583 584 3.723348 GCGTCGGCTTTCGGCTTT 61.723 61.111 0.00 0.00 42.07 3.51
584 585 4.980805 TGCGTCGGCTTTCGGCTT 62.981 61.111 0.00 0.00 42.07 4.35
585 586 4.980805 TTGCGTCGGCTTTCGGCT 62.981 61.111 0.00 0.00 42.07 5.52
640 642 0.464452 GGGTTGATACTCCTGACGGG 59.536 60.000 0.00 0.00 0.00 5.28
844 853 2.599139 TATAGGTGGCTGGACGGGCT 62.599 60.000 6.26 0.00 0.00 5.19
845 854 1.481056 ATATAGGTGGCTGGACGGGC 61.481 60.000 0.00 0.00 0.00 6.13
955 973 0.035630 CAAGGCAGCTAGCTCAAGGT 60.036 55.000 16.15 0.00 44.79 3.50
989 1007 0.548031 GATGCCCATCCTGACCTGAA 59.452 55.000 0.00 0.00 31.76 3.02
1018 1045 3.188100 CGCGCACATGTCCGACAT 61.188 61.111 14.65 8.28 39.91 3.06
1188 1215 1.856265 CGGCCACCTTGTTCTGCTTC 61.856 60.000 2.24 0.00 0.00 3.86
1443 1470 2.207924 AGCGTTGGGGTTCTCGTCT 61.208 57.895 0.00 0.00 0.00 4.18
1491 1518 0.179056 TGGCTAAAGGATGGCTACGC 60.179 55.000 0.00 0.00 0.00 4.42
1502 1553 1.756430 GAAGGAAGGCCTGGCTAAAG 58.244 55.000 19.68 0.00 46.28 1.85
1522 1573 2.223758 CGGACCTACTACAAGCTTAGCC 60.224 54.545 0.00 0.00 0.00 3.93
1541 1592 2.809696 ACGACCTCCAAAAATTACACGG 59.190 45.455 0.00 0.00 0.00 4.94
1542 1593 3.744426 AGACGACCTCCAAAAATTACACG 59.256 43.478 0.00 0.00 0.00 4.49
1590 1648 7.784633 ATTTACAATTTCACTTTGTGGGTTG 57.215 32.000 0.00 4.21 37.81 3.77
1617 1675 9.357652 CTACGTAAAGGCAATAAACAAGTACTA 57.642 33.333 0.00 0.00 0.00 1.82
1618 1676 7.148523 GCTACGTAAAGGCAATAAACAAGTACT 60.149 37.037 0.00 0.00 0.00 2.73
1619 1677 6.957635 GCTACGTAAAGGCAATAAACAAGTAC 59.042 38.462 0.00 0.00 0.00 2.73
1620 1678 6.875195 AGCTACGTAAAGGCAATAAACAAGTA 59.125 34.615 7.88 0.00 0.00 2.24
1621 1679 5.704053 AGCTACGTAAAGGCAATAAACAAGT 59.296 36.000 7.88 0.00 0.00 3.16
1625 1683 6.898912 ACTAGCTACGTAAAGGCAATAAAC 57.101 37.500 7.88 0.00 0.00 2.01
1627 1689 7.338800 ACTACTAGCTACGTAAAGGCAATAA 57.661 36.000 7.88 0.00 0.00 1.40
1653 1715 7.568199 AAATCACAAACTACTGTAACAAGCT 57.432 32.000 0.00 0.00 0.00 3.74
1659 1721 8.282455 TGGTTCAAAATCACAAACTACTGTAA 57.718 30.769 0.00 0.00 0.00 2.41
1934 1996 5.296780 TCTCCTTCGCATCAACATTTATTCC 59.703 40.000 0.00 0.00 0.00 3.01
1948 2010 1.769026 ATGCTACTCTCTCCTTCGCA 58.231 50.000 0.00 0.00 0.00 5.10
1950 2012 9.337396 AGATATATTATGCTACTCTCTCCTTCG 57.663 37.037 0.00 0.00 0.00 3.79
2019 2085 9.428097 ACTAGTTATTCCTAAAAACGTGGTAAG 57.572 33.333 0.00 0.00 0.00 2.34
2061 2127 9.181061 GGGGTTATGTTTGCTCTTTTAATAGTA 57.819 33.333 0.00 0.00 0.00 1.82
2062 2128 7.123697 GGGGGTTATGTTTGCTCTTTTAATAGT 59.876 37.037 0.00 0.00 0.00 2.12
2063 2129 7.342026 AGGGGGTTATGTTTGCTCTTTTAATAG 59.658 37.037 0.00 0.00 0.00 1.73
2064 2130 7.186268 AGGGGGTTATGTTTGCTCTTTTAATA 58.814 34.615 0.00 0.00 0.00 0.98
2065 2131 6.022958 AGGGGGTTATGTTTGCTCTTTTAAT 58.977 36.000 0.00 0.00 0.00 1.40
2066 2132 5.399113 AGGGGGTTATGTTTGCTCTTTTAA 58.601 37.500 0.00 0.00 0.00 1.52
2067 2133 5.005628 AGGGGGTTATGTTTGCTCTTTTA 57.994 39.130 0.00 0.00 0.00 1.52
2068 2134 3.832490 GAGGGGGTTATGTTTGCTCTTTT 59.168 43.478 0.00 0.00 0.00 2.27
2069 2135 3.076032 AGAGGGGGTTATGTTTGCTCTTT 59.924 43.478 0.00 0.00 0.00 2.52
2070 2136 2.649816 AGAGGGGGTTATGTTTGCTCTT 59.350 45.455 0.00 0.00 0.00 2.85
2071 2137 2.279173 AGAGGGGGTTATGTTTGCTCT 58.721 47.619 0.00 0.00 0.00 4.09
2072 2138 2.808906 AGAGGGGGTTATGTTTGCTC 57.191 50.000 0.00 0.00 0.00 4.26
2073 2139 4.600062 CTTTAGAGGGGGTTATGTTTGCT 58.400 43.478 0.00 0.00 0.00 3.91
2074 2140 3.130516 GCTTTAGAGGGGGTTATGTTTGC 59.869 47.826 0.00 0.00 0.00 3.68
2075 2141 3.699538 GGCTTTAGAGGGGGTTATGTTTG 59.300 47.826 0.00 0.00 0.00 2.93
2076 2142 3.335484 TGGCTTTAGAGGGGGTTATGTTT 59.665 43.478 0.00 0.00 0.00 2.83
2077 2143 2.923629 TGGCTTTAGAGGGGGTTATGTT 59.076 45.455 0.00 0.00 0.00 2.71
2078 2144 2.241430 GTGGCTTTAGAGGGGGTTATGT 59.759 50.000 0.00 0.00 0.00 2.29
2079 2145 2.241176 TGTGGCTTTAGAGGGGGTTATG 59.759 50.000 0.00 0.00 0.00 1.90
2080 2146 2.241430 GTGTGGCTTTAGAGGGGGTTAT 59.759 50.000 0.00 0.00 0.00 1.89
2081 2147 1.631898 GTGTGGCTTTAGAGGGGGTTA 59.368 52.381 0.00 0.00 0.00 2.85
2082 2148 0.404426 GTGTGGCTTTAGAGGGGGTT 59.596 55.000 0.00 0.00 0.00 4.11
2083 2149 0.770557 TGTGTGGCTTTAGAGGGGGT 60.771 55.000 0.00 0.00 0.00 4.95
2084 2150 0.035056 CTGTGTGGCTTTAGAGGGGG 60.035 60.000 0.00 0.00 0.00 5.40
2085 2151 0.678048 GCTGTGTGGCTTTAGAGGGG 60.678 60.000 0.00 0.00 0.00 4.79
2086 2152 1.021390 CGCTGTGTGGCTTTAGAGGG 61.021 60.000 0.00 0.00 0.00 4.30
2087 2153 0.037326 TCGCTGTGTGGCTTTAGAGG 60.037 55.000 0.00 0.00 0.00 3.69
2088 2154 1.728971 CTTCGCTGTGTGGCTTTAGAG 59.271 52.381 0.00 0.00 0.00 2.43
2089 2155 1.070134 ACTTCGCTGTGTGGCTTTAGA 59.930 47.619 0.00 0.00 0.00 2.10
2090 2156 1.195448 CACTTCGCTGTGTGGCTTTAG 59.805 52.381 0.45 0.00 33.61 1.85
2091 2157 1.225855 CACTTCGCTGTGTGGCTTTA 58.774 50.000 0.45 0.00 33.61 1.85
2092 2158 2.024918 CACTTCGCTGTGTGGCTTT 58.975 52.632 0.45 0.00 33.61 3.51
2093 2159 3.736483 CACTTCGCTGTGTGGCTT 58.264 55.556 0.45 0.00 33.61 4.35
2099 2165 2.134201 TCTGTGTACACTTCGCTGTG 57.866 50.000 25.60 6.16 43.07 3.66
2100 2166 2.100916 ACTTCTGTGTACACTTCGCTGT 59.899 45.455 25.60 13.87 0.00 4.40
2101 2167 2.743938 ACTTCTGTGTACACTTCGCTG 58.256 47.619 25.60 13.31 0.00 5.18
2102 2168 3.305199 GGTACTTCTGTGTACACTTCGCT 60.305 47.826 25.60 9.00 43.17 4.93
2103 2169 2.985139 GGTACTTCTGTGTACACTTCGC 59.015 50.000 25.60 9.90 43.17 4.70
2104 2170 3.231965 CGGTACTTCTGTGTACACTTCG 58.768 50.000 25.60 14.30 43.17 3.79
2105 2171 3.254166 TCCGGTACTTCTGTGTACACTTC 59.746 47.826 25.60 4.14 43.17 3.01
2106 2172 3.225104 TCCGGTACTTCTGTGTACACTT 58.775 45.455 25.60 8.37 43.17 3.16
2107 2173 2.818432 CTCCGGTACTTCTGTGTACACT 59.182 50.000 25.60 8.63 43.17 3.55
2108 2174 2.816087 TCTCCGGTACTTCTGTGTACAC 59.184 50.000 19.36 19.36 43.17 2.90
2109 2175 2.816087 GTCTCCGGTACTTCTGTGTACA 59.184 50.000 0.00 0.00 43.17 2.90
2110 2176 2.159599 CGTCTCCGGTACTTCTGTGTAC 60.160 54.545 0.00 0.00 41.31 2.90
2111 2177 2.079158 CGTCTCCGGTACTTCTGTGTA 58.921 52.381 0.00 0.00 0.00 2.90
2112 2178 0.879765 CGTCTCCGGTACTTCTGTGT 59.120 55.000 0.00 0.00 0.00 3.72
2113 2179 0.879765 ACGTCTCCGGTACTTCTGTG 59.120 55.000 0.00 0.00 38.78 3.66
2114 2180 1.613836 AACGTCTCCGGTACTTCTGT 58.386 50.000 0.00 0.00 38.78 3.41
2115 2181 3.005554 TCTAACGTCTCCGGTACTTCTG 58.994 50.000 0.00 0.00 38.78 3.02
2116 2182 3.340814 TCTAACGTCTCCGGTACTTCT 57.659 47.619 0.00 0.00 38.78 2.85
2117 2183 3.624861 TGATCTAACGTCTCCGGTACTTC 59.375 47.826 0.00 0.00 38.78 3.01
2118 2184 3.614092 TGATCTAACGTCTCCGGTACTT 58.386 45.455 0.00 1.22 38.78 2.24
2119 2185 3.272574 TGATCTAACGTCTCCGGTACT 57.727 47.619 0.00 0.00 38.78 2.73
2120 2186 4.036027 TGATTGATCTAACGTCTCCGGTAC 59.964 45.833 0.00 0.00 38.78 3.34
2121 2187 4.201657 TGATTGATCTAACGTCTCCGGTA 58.798 43.478 0.00 0.00 38.78 4.02
2122 2188 3.021695 TGATTGATCTAACGTCTCCGGT 58.978 45.455 0.00 0.00 38.78 5.28
2123 2189 3.710326 TGATTGATCTAACGTCTCCGG 57.290 47.619 0.00 0.00 38.78 5.14
2124 2190 5.103000 AGTTTGATTGATCTAACGTCTCCG 58.897 41.667 10.93 0.00 43.82 4.63
2125 2191 8.475331 TTTAGTTTGATTGATCTAACGTCTCC 57.525 34.615 10.93 0.00 43.82 3.71
2156 2222 9.253832 ACCTTGAATGTAATATTGATTGTTGGA 57.746 29.630 0.00 0.00 0.00 3.53
2157 2223 9.520204 GACCTTGAATGTAATATTGATTGTTGG 57.480 33.333 0.00 1.74 0.00 3.77
2160 2226 8.408601 GCAGACCTTGAATGTAATATTGATTGT 58.591 33.333 0.00 0.00 0.00 2.71
2161 2227 7.864379 GGCAGACCTTGAATGTAATATTGATTG 59.136 37.037 0.00 0.00 0.00 2.67
2162 2228 7.560991 TGGCAGACCTTGAATGTAATATTGATT 59.439 33.333 0.00 0.00 36.63 2.57
2163 2229 7.013655 GTGGCAGACCTTGAATGTAATATTGAT 59.986 37.037 0.00 0.00 36.63 2.57
2164 2230 6.318648 GTGGCAGACCTTGAATGTAATATTGA 59.681 38.462 0.00 0.00 36.63 2.57
2165 2231 6.095300 TGTGGCAGACCTTGAATGTAATATTG 59.905 38.462 0.00 0.00 36.63 1.90
2166 2232 6.095440 GTGTGGCAGACCTTGAATGTAATATT 59.905 38.462 2.86 0.00 36.63 1.28
2167 2233 5.590259 GTGTGGCAGACCTTGAATGTAATAT 59.410 40.000 2.86 0.00 36.63 1.28
2168 2234 4.941263 GTGTGGCAGACCTTGAATGTAATA 59.059 41.667 2.86 0.00 36.63 0.98
2169 2235 3.758554 GTGTGGCAGACCTTGAATGTAAT 59.241 43.478 2.86 0.00 36.63 1.89
2170 2236 3.146066 GTGTGGCAGACCTTGAATGTAA 58.854 45.455 2.86 0.00 36.63 2.41
2171 2237 2.105649 TGTGTGGCAGACCTTGAATGTA 59.894 45.455 12.66 0.00 36.63 2.29
2172 2238 1.133823 TGTGTGGCAGACCTTGAATGT 60.134 47.619 12.66 0.00 36.63 2.71
2173 2239 1.608055 TGTGTGGCAGACCTTGAATG 58.392 50.000 12.66 0.00 36.63 2.67
2174 2240 2.362077 GTTTGTGTGGCAGACCTTGAAT 59.638 45.455 12.66 0.00 36.63 2.57
2175 2241 1.748493 GTTTGTGTGGCAGACCTTGAA 59.252 47.619 12.66 0.00 36.63 2.69
2176 2242 1.064758 AGTTTGTGTGGCAGACCTTGA 60.065 47.619 12.66 0.00 33.13 3.02
2177 2243 1.392589 AGTTTGTGTGGCAGACCTTG 58.607 50.000 12.66 0.00 33.13 3.61
2178 2244 2.949644 GTTAGTTTGTGTGGCAGACCTT 59.050 45.455 12.66 0.00 33.13 3.50
2179 2245 2.572290 GTTAGTTTGTGTGGCAGACCT 58.428 47.619 12.66 4.87 33.13 3.85
2180 2246 1.263217 CGTTAGTTTGTGTGGCAGACC 59.737 52.381 12.66 0.00 33.13 3.85
2181 2247 1.333791 GCGTTAGTTTGTGTGGCAGAC 60.334 52.381 8.00 8.00 32.89 3.51
2182 2248 0.941542 GCGTTAGTTTGTGTGGCAGA 59.058 50.000 0.00 0.00 0.00 4.26
2183 2249 0.944386 AGCGTTAGTTTGTGTGGCAG 59.056 50.000 0.00 0.00 0.00 4.85
2184 2250 0.941542 GAGCGTTAGTTTGTGTGGCA 59.058 50.000 0.00 0.00 0.00 4.92
2185 2251 0.237498 GGAGCGTTAGTTTGTGTGGC 59.763 55.000 0.00 0.00 0.00 5.01
2186 2252 1.531149 CTGGAGCGTTAGTTTGTGTGG 59.469 52.381 0.00 0.00 0.00 4.17
2187 2253 2.479837 TCTGGAGCGTTAGTTTGTGTG 58.520 47.619 0.00 0.00 0.00 3.82
2188 2254 2.902705 TCTGGAGCGTTAGTTTGTGT 57.097 45.000 0.00 0.00 0.00 3.72
2189 2255 5.856126 TTAATCTGGAGCGTTAGTTTGTG 57.144 39.130 0.00 0.00 0.00 3.33
2190 2256 6.430000 ACATTTAATCTGGAGCGTTAGTTTGT 59.570 34.615 0.00 0.00 0.00 2.83
2191 2257 6.842163 ACATTTAATCTGGAGCGTTAGTTTG 58.158 36.000 0.00 0.00 0.00 2.93
2192 2258 7.390718 AGAACATTTAATCTGGAGCGTTAGTTT 59.609 33.333 0.00 0.00 0.00 2.66
2193 2259 6.879458 AGAACATTTAATCTGGAGCGTTAGTT 59.121 34.615 0.00 0.00 0.00 2.24
2194 2260 6.313905 CAGAACATTTAATCTGGAGCGTTAGT 59.686 38.462 0.00 0.00 39.48 2.24
2195 2261 6.709643 CAGAACATTTAATCTGGAGCGTTAG 58.290 40.000 0.00 0.00 39.48 2.34
2196 2262 5.064707 GCAGAACATTTAATCTGGAGCGTTA 59.935 40.000 6.06 0.00 42.62 3.18
2197 2263 4.142600 GCAGAACATTTAATCTGGAGCGTT 60.143 41.667 6.06 0.00 42.62 4.84
2198 2264 3.375299 GCAGAACATTTAATCTGGAGCGT 59.625 43.478 6.06 0.00 42.62 5.07
2199 2265 3.242870 GGCAGAACATTTAATCTGGAGCG 60.243 47.826 6.06 0.00 42.62 5.03
2200 2266 3.696051 TGGCAGAACATTTAATCTGGAGC 59.304 43.478 6.06 0.00 42.62 4.70
2201 2267 4.337555 CCTGGCAGAACATTTAATCTGGAG 59.662 45.833 17.94 0.00 42.62 3.86
2202 2268 4.272489 CCTGGCAGAACATTTAATCTGGA 58.728 43.478 17.94 0.00 42.62 3.86
2203 2269 3.181483 GCCTGGCAGAACATTTAATCTGG 60.181 47.826 17.94 0.00 42.62 3.86
2204 2270 3.444742 TGCCTGGCAGAACATTTAATCTG 59.555 43.478 19.30 0.29 44.66 2.90
2205 2271 3.700538 TGCCTGGCAGAACATTTAATCT 58.299 40.909 19.30 0.00 33.32 2.40
2220 2286 4.351054 GTGGGGTGGTCTGCCTGG 62.351 72.222 0.00 0.00 35.27 4.45
2221 2287 4.704833 CGTGGGGTGGTCTGCCTG 62.705 72.222 0.00 0.00 35.27 4.85
2225 2291 3.476031 AAGTGCGTGGGGTGGTCTG 62.476 63.158 0.00 0.00 0.00 3.51
2226 2292 3.168528 AAGTGCGTGGGGTGGTCT 61.169 61.111 0.00 0.00 0.00 3.85
2227 2293 2.668550 GAAGTGCGTGGGGTGGTC 60.669 66.667 0.00 0.00 0.00 4.02
2228 2294 4.265056 GGAAGTGCGTGGGGTGGT 62.265 66.667 0.00 0.00 0.00 4.16
2229 2295 3.953775 AGGAAGTGCGTGGGGTGG 61.954 66.667 0.00 0.00 0.00 4.61
2230 2296 2.669569 CAGGAAGTGCGTGGGGTG 60.670 66.667 0.00 0.00 0.00 4.61
2231 2297 4.643387 GCAGGAAGTGCGTGGGGT 62.643 66.667 0.00 0.00 43.99 4.95
2239 2305 4.785453 GCGGAGGGGCAGGAAGTG 62.785 72.222 0.00 0.00 0.00 3.16
2241 2307 4.785453 GTGCGGAGGGGCAGGAAG 62.785 72.222 0.00 0.00 44.93 3.46
2248 2314 3.814268 CAAATGCGTGCGGAGGGG 61.814 66.667 0.00 0.00 0.00 4.79
2249 2315 2.331893 TTCAAATGCGTGCGGAGGG 61.332 57.895 0.00 0.00 0.00 4.30
2250 2316 1.154225 GTTCAAATGCGTGCGGAGG 60.154 57.895 0.00 0.00 0.00 4.30
2251 2317 1.154225 GGTTCAAATGCGTGCGGAG 60.154 57.895 0.00 0.00 0.00 4.63
2252 2318 2.622011 GGGTTCAAATGCGTGCGGA 61.622 57.895 0.00 0.00 0.00 5.54
2253 2319 2.126502 GGGTTCAAATGCGTGCGG 60.127 61.111 0.00 0.00 0.00 5.69
2254 2320 1.007964 TTGGGTTCAAATGCGTGCG 60.008 52.632 0.00 0.00 0.00 5.34
2255 2321 0.249238 TGTTGGGTTCAAATGCGTGC 60.249 50.000 0.00 0.00 34.28 5.34
2256 2322 2.215907 TTGTTGGGTTCAAATGCGTG 57.784 45.000 0.00 0.00 34.28 5.34
2257 2323 2.969628 TTTGTTGGGTTCAAATGCGT 57.030 40.000 0.00 0.00 34.28 5.24
2258 2324 5.063312 GGATAATTTGTTGGGTTCAAATGCG 59.937 40.000 4.96 0.00 42.31 4.73
2259 2325 5.936956 TGGATAATTTGTTGGGTTCAAATGC 59.063 36.000 4.96 0.00 42.31 3.56
2260 2326 7.118101 CAGTGGATAATTTGTTGGGTTCAAATG 59.882 37.037 4.96 0.00 42.31 2.32
2261 2327 7.160726 CAGTGGATAATTTGTTGGGTTCAAAT 58.839 34.615 0.00 0.00 44.14 2.32
2262 2328 6.520272 CAGTGGATAATTTGTTGGGTTCAAA 58.480 36.000 0.00 0.00 38.77 2.69
2263 2329 5.510520 GCAGTGGATAATTTGTTGGGTTCAA 60.511 40.000 0.00 0.00 0.00 2.69
2264 2330 4.021544 GCAGTGGATAATTTGTTGGGTTCA 60.022 41.667 0.00 0.00 0.00 3.18
2265 2331 4.494484 GCAGTGGATAATTTGTTGGGTTC 58.506 43.478 0.00 0.00 0.00 3.62
2266 2332 3.260632 GGCAGTGGATAATTTGTTGGGTT 59.739 43.478 0.00 0.00 0.00 4.11
2267 2333 2.831526 GGCAGTGGATAATTTGTTGGGT 59.168 45.455 0.00 0.00 0.00 4.51
2268 2334 2.168313 GGGCAGTGGATAATTTGTTGGG 59.832 50.000 0.00 0.00 0.00 4.12
2269 2335 2.168313 GGGGCAGTGGATAATTTGTTGG 59.832 50.000 0.00 0.00 0.00 3.77
2270 2336 2.830923 TGGGGCAGTGGATAATTTGTTG 59.169 45.455 0.00 0.00 0.00 3.33
2271 2337 3.182887 TGGGGCAGTGGATAATTTGTT 57.817 42.857 0.00 0.00 0.00 2.83
2272 2338 2.917713 TGGGGCAGTGGATAATTTGT 57.082 45.000 0.00 0.00 0.00 2.83
2273 2339 3.181463 CCATTGGGGCAGTGGATAATTTG 60.181 47.826 0.00 0.00 42.72 2.32
2274 2340 3.040477 CCATTGGGGCAGTGGATAATTT 58.960 45.455 0.00 0.00 42.72 1.82
2275 2341 2.681422 CCATTGGGGCAGTGGATAATT 58.319 47.619 0.00 0.00 42.72 1.40
2276 2342 2.386829 CCATTGGGGCAGTGGATAAT 57.613 50.000 0.00 0.00 42.72 1.28
2277 2343 3.922426 CCATTGGGGCAGTGGATAA 57.078 52.632 0.00 0.00 42.72 1.75
2295 2361 3.443925 GAAGAAAGGCAGGGGCGC 61.444 66.667 0.00 0.00 42.47 6.53
2296 2362 2.751837 GGAAGAAAGGCAGGGGCG 60.752 66.667 0.00 0.00 42.47 6.13
2297 2363 2.363018 GGGAAGAAAGGCAGGGGC 60.363 66.667 0.00 0.00 40.13 5.80
2298 2364 2.360585 GGGGAAGAAAGGCAGGGG 59.639 66.667 0.00 0.00 0.00 4.79
2299 2365 1.304464 GTGGGGAAGAAAGGCAGGG 60.304 63.158 0.00 0.00 0.00 4.45
2300 2366 1.304464 GGTGGGGAAGAAAGGCAGG 60.304 63.158 0.00 0.00 0.00 4.85
2301 2367 1.675641 CGGTGGGGAAGAAAGGCAG 60.676 63.158 0.00 0.00 0.00 4.85
2302 2368 2.434331 CGGTGGGGAAGAAAGGCA 59.566 61.111 0.00 0.00 0.00 4.75
2303 2369 2.193087 TAGCGGTGGGGAAGAAAGGC 62.193 60.000 0.00 0.00 0.00 4.35
2304 2370 0.546598 ATAGCGGTGGGGAAGAAAGG 59.453 55.000 0.00 0.00 0.00 3.11
2305 2371 1.668419 CATAGCGGTGGGGAAGAAAG 58.332 55.000 0.00 0.00 0.00 2.62
2306 2372 0.393808 GCATAGCGGTGGGGAAGAAA 60.394 55.000 0.00 0.00 0.00 2.52
2307 2373 1.223487 GCATAGCGGTGGGGAAGAA 59.777 57.895 0.00 0.00 0.00 2.52
2308 2374 1.686325 GAGCATAGCGGTGGGGAAGA 61.686 60.000 0.00 0.00 0.00 2.87
2309 2375 1.227674 GAGCATAGCGGTGGGGAAG 60.228 63.158 0.00 0.00 0.00 3.46
2310 2376 2.742116 GGAGCATAGCGGTGGGGAA 61.742 63.158 0.00 0.00 0.00 3.97
2311 2377 3.161450 GGAGCATAGCGGTGGGGA 61.161 66.667 0.00 0.00 0.00 4.81
2312 2378 4.256180 GGGAGCATAGCGGTGGGG 62.256 72.222 0.00 0.00 0.00 4.96
2313 2379 4.256180 GGGGAGCATAGCGGTGGG 62.256 72.222 0.00 0.00 0.00 4.61
2314 2380 3.164269 AGGGGAGCATAGCGGTGG 61.164 66.667 0.00 0.00 0.00 4.61
2315 2381 2.093537 GAGAGGGGAGCATAGCGGTG 62.094 65.000 0.00 0.00 0.00 4.94
2316 2382 1.834822 GAGAGGGGAGCATAGCGGT 60.835 63.158 0.00 0.00 0.00 5.68
2317 2383 2.578714 GGAGAGGGGAGCATAGCGG 61.579 68.421 0.00 0.00 0.00 5.52
2318 2384 2.578714 GGGAGAGGGGAGCATAGCG 61.579 68.421 0.00 0.00 0.00 4.26
2319 2385 2.220586 GGGGAGAGGGGAGCATAGC 61.221 68.421 0.00 0.00 0.00 2.97
2320 2386 1.124477 GTGGGGAGAGGGGAGCATAG 61.124 65.000 0.00 0.00 0.00 2.23
2321 2387 1.074471 GTGGGGAGAGGGGAGCATA 60.074 63.158 0.00 0.00 0.00 3.14
2322 2388 2.367512 GTGGGGAGAGGGGAGCAT 60.368 66.667 0.00 0.00 0.00 3.79
2325 2391 4.075793 TCCGTGGGGAGAGGGGAG 62.076 72.222 0.00 0.00 37.43 4.30
2326 2392 4.393778 GTCCGTGGGGAGAGGGGA 62.394 72.222 0.00 0.00 44.97 4.81
2341 2407 4.154347 CAGAGGCTGGGAGGCGTC 62.154 72.222 0.00 0.00 46.58 5.19
2377 2443 1.128188 AATAGGGGAGGGATGGCGTC 61.128 60.000 0.00 0.00 0.00 5.19
2378 2444 0.697854 AAATAGGGGAGGGATGGCGT 60.698 55.000 0.00 0.00 0.00 5.68
2379 2445 0.036875 GAAATAGGGGAGGGATGGCG 59.963 60.000 0.00 0.00 0.00 5.69
2380 2446 0.405973 GGAAATAGGGGAGGGATGGC 59.594 60.000 0.00 0.00 0.00 4.40
2381 2447 1.076438 GGGAAATAGGGGAGGGATGG 58.924 60.000 0.00 0.00 0.00 3.51
2382 2448 1.988846 GAGGGAAATAGGGGAGGGATG 59.011 57.143 0.00 0.00 0.00 3.51
2383 2449 1.883387 AGAGGGAAATAGGGGAGGGAT 59.117 52.381 0.00 0.00 0.00 3.85
2384 2450 1.340502 AGAGGGAAATAGGGGAGGGA 58.659 55.000 0.00 0.00 0.00 4.20
2385 2451 2.058705 GAAGAGGGAAATAGGGGAGGG 58.941 57.143 0.00 0.00 0.00 4.30
2386 2452 2.439880 GTGAAGAGGGAAATAGGGGAGG 59.560 54.545 0.00 0.00 0.00 4.30
2387 2453 2.439880 GGTGAAGAGGGAAATAGGGGAG 59.560 54.545 0.00 0.00 0.00 4.30
2388 2454 2.047296 AGGTGAAGAGGGAAATAGGGGA 59.953 50.000 0.00 0.00 0.00 4.81
2389 2455 2.439880 GAGGTGAAGAGGGAAATAGGGG 59.560 54.545 0.00 0.00 0.00 4.79
2390 2456 2.439880 GGAGGTGAAGAGGGAAATAGGG 59.560 54.545 0.00 0.00 0.00 3.53
2391 2457 3.115390 TGGAGGTGAAGAGGGAAATAGG 58.885 50.000 0.00 0.00 0.00 2.57
2392 2458 3.430929 CGTGGAGGTGAAGAGGGAAATAG 60.431 52.174 0.00 0.00 0.00 1.73
2393 2459 2.500098 CGTGGAGGTGAAGAGGGAAATA 59.500 50.000 0.00 0.00 0.00 1.40
2394 2460 1.279271 CGTGGAGGTGAAGAGGGAAAT 59.721 52.381 0.00 0.00 0.00 2.17
2395 2461 0.685097 CGTGGAGGTGAAGAGGGAAA 59.315 55.000 0.00 0.00 0.00 3.13
2396 2462 1.192146 CCGTGGAGGTGAAGAGGGAA 61.192 60.000 0.00 0.00 34.51 3.97
2397 2463 1.609501 CCGTGGAGGTGAAGAGGGA 60.610 63.158 0.00 0.00 34.51 4.20
2398 2464 2.982130 CCGTGGAGGTGAAGAGGG 59.018 66.667 0.00 0.00 34.51 4.30
2399 2465 2.266055 GCCGTGGAGGTGAAGAGG 59.734 66.667 0.00 0.00 43.70 3.69
2400 2466 2.266055 GGCCGTGGAGGTGAAGAG 59.734 66.667 0.00 0.00 43.70 2.85
2401 2467 2.525629 TGGCCGTGGAGGTGAAGA 60.526 61.111 0.00 0.00 43.70 2.87
2402 2468 2.358737 GTGGCCGTGGAGGTGAAG 60.359 66.667 0.00 0.00 43.70 3.02
2403 2469 4.308458 CGTGGCCGTGGAGGTGAA 62.308 66.667 0.00 0.00 43.70 3.18
2438 2504 3.849951 ATAGCGACCGCAGTGGGG 61.850 66.667 23.87 23.87 44.64 4.96
2439 2505 2.369257 ATCATAGCGACCGCAGTGGG 62.369 60.000 16.97 0.00 44.64 4.61
2440 2506 0.941463 GATCATAGCGACCGCAGTGG 60.941 60.000 16.97 0.00 44.88 4.00
2441 2507 0.941463 GGATCATAGCGACCGCAGTG 60.941 60.000 16.97 13.61 44.88 3.66
2442 2508 1.364171 GGATCATAGCGACCGCAGT 59.636 57.895 16.97 1.52 44.88 4.40
2443 2509 1.730902 CGGATCATAGCGACCGCAG 60.731 63.158 16.97 6.22 44.88 5.18
2444 2510 2.335011 CGGATCATAGCGACCGCA 59.665 61.111 16.97 3.29 44.88 5.69
2446 2512 2.430921 GGCGGATCATAGCGACCG 60.431 66.667 0.00 0.00 46.74 4.79
2447 2513 2.430921 CGGCGGATCATAGCGACC 60.431 66.667 0.00 0.00 0.00 4.79
2448 2514 3.106407 GCGGCGGATCATAGCGAC 61.106 66.667 9.78 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.