Multiple sequence alignment - TraesCS6D01G049000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G049000 chr6D 100.000 2831 0 0 1 2831 23749498 23746668 0.000000e+00 5228.0
1 TraesCS6D01G049000 chr6D 84.592 1006 125 17 900 1890 23641861 23640871 0.000000e+00 972.0
2 TraesCS6D01G049000 chr6D 85.455 935 113 18 902 1820 23631815 23630888 0.000000e+00 952.0
3 TraesCS6D01G049000 chr6D 87.598 508 45 8 2108 2613 389986562 389986071 8.800000e-160 573.0
4 TraesCS6D01G049000 chr6D 90.244 287 28 0 621 907 23642217 23641931 2.660000e-100 375.0
5 TraesCS6D01G049000 chr6D 90.780 282 17 6 626 907 23632159 23631887 4.460000e-98 368.0
6 TraesCS6D01G049000 chr6D 91.848 184 13 2 251 433 392896967 392897149 3.620000e-64 255.0
7 TraesCS6D01G049000 chr6D 92.222 180 12 2 251 429 406391351 406391529 1.300000e-63 254.0
8 TraesCS6D01G049000 chr6B 92.157 1938 121 15 900 2831 38625419 38623507 0.000000e+00 2708.0
9 TraesCS6D01G049000 chr6B 84.791 1006 123 17 900 1890 37652628 37651638 0.000000e+00 983.0
10 TraesCS6D01G049000 chr6B 85.348 935 114 17 900 1818 38541113 38540186 0.000000e+00 946.0
11 TraesCS6D01G049000 chr6B 92.095 506 16 8 425 907 38625993 38625489 0.000000e+00 691.0
12 TraesCS6D01G049000 chr6B 82.674 733 84 28 1191 1888 37326108 37326832 6.700000e-171 610.0
13 TraesCS6D01G049000 chr6B 87.891 479 38 9 2138 2613 584220794 584221255 1.920000e-151 545.0
14 TraesCS6D01G049000 chr6B 94.275 262 14 1 1 261 38626255 38625994 1.580000e-107 399.0
15 TraesCS6D01G049000 chr6B 89.895 287 29 0 621 907 37652984 37652698 1.240000e-98 370.0
16 TraesCS6D01G049000 chr6B 91.386 267 23 0 641 907 37644980 37644714 1.600000e-97 366.0
17 TraesCS6D01G049000 chr6B 89.547 287 30 0 621 907 46653942 46654228 5.760000e-97 364.0
18 TraesCS6D01G049000 chr6B 89.474 285 21 3 623 907 37035463 37035738 4.490000e-93 351.0
19 TraesCS6D01G049000 chr6A 93.790 789 46 3 1249 2036 22351508 22350722 0.000000e+00 1182.0
20 TraesCS6D01G049000 chr6A 85.855 1018 107 26 900 1888 22172145 22173154 0.000000e+00 1048.0
21 TraesCS6D01G049000 chr6A 85.699 937 114 16 900 1820 22200643 22199711 0.000000e+00 970.0
22 TraesCS6D01G049000 chr6A 85.363 936 116 15 900 1820 22193129 22192200 0.000000e+00 950.0
23 TraesCS6D01G049000 chr6A 87.474 487 42 9 2142 2625 536439504 536439034 6.900000e-151 544.0
24 TraesCS6D01G049000 chr6A 87.119 427 46 8 2064 2482 22275589 22275164 2.550000e-130 475.0
25 TraesCS6D01G049000 chr6A 89.761 293 30 0 621 913 22200999 22200707 2.660000e-100 375.0
26 TraesCS6D01G049000 chr3B 92.132 394 18 7 527 907 745192858 745192465 6.900000e-151 544.0
27 TraesCS6D01G049000 chr7D 84.073 383 44 13 1469 1837 59704580 59704959 1.250000e-93 353.0
28 TraesCS6D01G049000 chr7D 80.488 246 29 14 1605 1837 59707089 59707328 1.350000e-38 171.0
29 TraesCS6D01G049000 chr1B 95.210 167 7 1 260 425 340805182 340805348 2.160000e-66 263.0
30 TraesCS6D01G049000 chr1B 93.143 175 10 2 260 433 628050851 628050678 3.620000e-64 255.0
31 TraesCS6D01G049000 chr5D 93.642 173 10 1 259 430 420206042 420206214 1.010000e-64 257.0
32 TraesCS6D01G049000 chr1D 93.182 176 10 2 259 433 36612132 36612306 1.010000e-64 257.0
33 TraesCS6D01G049000 chr1D 91.803 183 13 2 242 423 238940397 238940216 1.300000e-63 254.0
34 TraesCS6D01G049000 chr2D 91.444 187 12 3 238 423 24312376 24312193 1.300000e-63 254.0
35 TraesCS6D01G049000 chr4B 90.957 188 13 4 260 446 113961281 113961097 1.680000e-62 250.0
36 TraesCS6D01G049000 chrUn 79.715 281 26 19 1581 1837 80173398 80173671 1.040000e-39 174.0
37 TraesCS6D01G049000 chr5B 100.000 28 0 0 1845 1872 149936784 149936811 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G049000 chr6D 23746668 23749498 2830 True 5228.0 5228 100.000000 1 2831 1 chr6D.!!$R1 2830
1 TraesCS6D01G049000 chr6D 23640871 23642217 1346 True 673.5 972 87.418000 621 1890 2 chr6D.!!$R4 1269
2 TraesCS6D01G049000 chr6D 23630888 23632159 1271 True 660.0 952 88.117500 626 1820 2 chr6D.!!$R3 1194
3 TraesCS6D01G049000 chr6B 38623507 38626255 2748 True 1266.0 2708 92.842333 1 2831 3 chr6B.!!$R4 2830
4 TraesCS6D01G049000 chr6B 38540186 38541113 927 True 946.0 946 85.348000 900 1818 1 chr6B.!!$R2 918
5 TraesCS6D01G049000 chr6B 37651638 37652984 1346 True 676.5 983 87.343000 621 1890 2 chr6B.!!$R3 1269
6 TraesCS6D01G049000 chr6B 37326108 37326832 724 False 610.0 610 82.674000 1191 1888 1 chr6B.!!$F2 697
7 TraesCS6D01G049000 chr6A 22350722 22351508 786 True 1182.0 1182 93.790000 1249 2036 1 chr6A.!!$R3 787
8 TraesCS6D01G049000 chr6A 22172145 22173154 1009 False 1048.0 1048 85.855000 900 1888 1 chr6A.!!$F1 988
9 TraesCS6D01G049000 chr6A 22192200 22193129 929 True 950.0 950 85.363000 900 1820 1 chr6A.!!$R1 920
10 TraesCS6D01G049000 chr6A 22199711 22200999 1288 True 672.5 970 87.730000 621 1820 2 chr6A.!!$R5 1199
11 TraesCS6D01G049000 chr7D 59704580 59707328 2748 False 262.0 353 82.280500 1469 1837 2 chr7D.!!$F1 368

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.660300 CGTCGCCTTGAAAACAAGCC 60.660 55.000 0.00 0.00 0.00 4.35 F
106 107 1.002315 AGGCATGAAAAACCATGTGCC 59.998 47.619 10.81 10.81 44.25 5.01 F
1197 1299 1.066787 GCGGTCTACTTCAAAGGAGCT 60.067 52.381 0.00 0.00 36.89 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1032 1134 0.108615 CGAAGTCCACAGATTCCGCT 60.109 55.0 0.00 0.00 0.0 5.52 R
1323 1425 1.079503 CGTTCTTGTAGGGCAGCTTC 58.920 55.0 0.00 0.00 0.0 3.86 R
2307 4821 0.395586 AAGTGTCTGGCTTGCAACCA 60.396 50.0 16.56 16.56 35.4 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 0.660300 CGTCGCCTTGAAAACAAGCC 60.660 55.000 0.00 0.00 0.00 4.35
66 67 2.095059 CCTTGAAAACAAGCCGAGATGG 60.095 50.000 0.00 0.00 42.50 3.51
69 70 2.552315 TGAAAACAAGCCGAGATGGTTC 59.448 45.455 0.00 0.00 41.21 3.62
96 97 8.593945 ACTATTGATTTTAGGAGGCATGAAAA 57.406 30.769 0.00 0.00 0.00 2.29
103 104 2.893424 AGGAGGCATGAAAAACCATGT 58.107 42.857 0.00 0.00 44.25 3.21
105 106 2.340337 GAGGCATGAAAAACCATGTGC 58.660 47.619 0.00 0.00 44.25 4.57
106 107 1.002315 AGGCATGAAAAACCATGTGCC 59.998 47.619 10.81 10.81 44.25 5.01
133 134 3.010250 ACAAGAAAAGGTAGGGTGGGATC 59.990 47.826 0.00 0.00 0.00 3.36
166 167 4.004982 GGCGGATACACTGAAAAGGTTTA 58.995 43.478 0.00 0.00 0.00 2.01
178 179 9.533253 CACTGAAAAGGTTTAAATTCATTGAGT 57.467 29.630 11.36 4.41 35.62 3.41
203 204 9.198837 GTTAGTTTTCCTTTGAACAAAACTGAA 57.801 29.630 15.84 6.73 45.55 3.02
261 263 5.352016 TGAATGTTACCCGCAAATGTACTAC 59.648 40.000 0.00 0.00 0.00 2.73
262 264 4.540359 TGTTACCCGCAAATGTACTACT 57.460 40.909 0.00 0.00 0.00 2.57
263 265 4.497300 TGTTACCCGCAAATGTACTACTC 58.503 43.478 0.00 0.00 0.00 2.59
264 266 2.685850 ACCCGCAAATGTACTACTCC 57.314 50.000 0.00 0.00 0.00 3.85
265 267 1.208776 ACCCGCAAATGTACTACTCCC 59.791 52.381 0.00 0.00 0.00 4.30
266 268 1.485066 CCCGCAAATGTACTACTCCCT 59.515 52.381 0.00 0.00 0.00 4.20
267 269 2.093128 CCCGCAAATGTACTACTCCCTT 60.093 50.000 0.00 0.00 0.00 3.95
268 270 3.195661 CCGCAAATGTACTACTCCCTTC 58.804 50.000 0.00 0.00 0.00 3.46
269 271 3.369052 CCGCAAATGTACTACTCCCTTCA 60.369 47.826 0.00 0.00 0.00 3.02
270 272 4.442706 CGCAAATGTACTACTCCCTTCAT 58.557 43.478 0.00 0.00 0.00 2.57
271 273 4.876107 CGCAAATGTACTACTCCCTTCATT 59.124 41.667 0.00 0.00 0.00 2.57
272 274 5.006746 CGCAAATGTACTACTCCCTTCATTC 59.993 44.000 0.00 0.00 0.00 2.67
273 275 5.297029 GCAAATGTACTACTCCCTTCATTCC 59.703 44.000 0.00 0.00 0.00 3.01
274 276 6.653989 CAAATGTACTACTCCCTTCATTCCT 58.346 40.000 0.00 0.00 0.00 3.36
275 277 7.635089 GCAAATGTACTACTCCCTTCATTCCTA 60.635 40.741 0.00 0.00 0.00 2.94
276 278 7.989947 AATGTACTACTCCCTTCATTCCTAA 57.010 36.000 0.00 0.00 0.00 2.69
277 279 7.989947 ATGTACTACTCCCTTCATTCCTAAA 57.010 36.000 0.00 0.00 0.00 1.85
278 280 7.989947 TGTACTACTCCCTTCATTCCTAAAT 57.010 36.000 0.00 0.00 0.00 1.40
279 281 9.670442 ATGTACTACTCCCTTCATTCCTAAATA 57.330 33.333 0.00 0.00 0.00 1.40
280 282 9.670442 TGTACTACTCCCTTCATTCCTAAATAT 57.330 33.333 0.00 0.00 0.00 1.28
310 312 9.832445 TCTTTCTACAGATTTAAACAAGTGACT 57.168 29.630 0.00 0.00 0.00 3.41
317 319 8.922676 ACAGATTTAAACAAGTGACTACATACG 58.077 33.333 0.00 0.00 0.00 3.06
318 320 8.380644 CAGATTTAAACAAGTGACTACATACGG 58.619 37.037 0.00 0.00 0.00 4.02
319 321 8.308931 AGATTTAAACAAGTGACTACATACGGA 58.691 33.333 0.00 0.00 0.00 4.69
320 322 7.878477 TTTAAACAAGTGACTACATACGGAG 57.122 36.000 0.00 0.00 0.00 4.63
321 323 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
322 324 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
323 325 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
324 326 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
325 327 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
326 328 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
327 329 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
328 330 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
329 331 5.350365 GTGACTACATACGGAGCAAAATGAA 59.650 40.000 0.00 0.00 0.00 2.57
330 332 6.037172 GTGACTACATACGGAGCAAAATGAAT 59.963 38.462 0.00 0.00 0.00 2.57
331 333 6.037062 TGACTACATACGGAGCAAAATGAATG 59.963 38.462 0.00 0.00 0.00 2.67
332 334 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
333 335 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
334 336 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
335 337 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
336 338 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
337 339 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
338 340 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
339 341 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
340 342 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
341 343 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
342 344 7.192232 GGAGCAAAATGAATGAATCTACACTC 58.808 38.462 0.00 0.00 0.00 3.51
343 345 7.066766 GGAGCAAAATGAATGAATCTACACTCT 59.933 37.037 0.00 0.00 0.00 3.24
344 346 9.102757 GAGCAAAATGAATGAATCTACACTCTA 57.897 33.333 0.00 0.00 0.00 2.43
345 347 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
373 375 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
375 377 9.642343 ATGTCTATATACATCCGTATGTGGTAT 57.358 33.333 3.56 5.25 45.99 2.73
376 378 9.470399 TGTCTATATACATCCGTATGTGGTATT 57.530 33.333 3.56 0.00 45.99 1.89
377 379 9.947669 GTCTATATACATCCGTATGTGGTATTC 57.052 37.037 3.56 0.00 45.99 1.75
378 380 9.689501 TCTATATACATCCGTATGTGGTATTCA 57.310 33.333 3.56 0.00 45.99 2.57
382 384 6.618287 ACATCCGTATGTGGTATTCATTTG 57.382 37.500 0.00 0.00 44.79 2.32
383 385 6.353323 ACATCCGTATGTGGTATTCATTTGA 58.647 36.000 0.00 0.00 44.79 2.69
384 386 6.826231 ACATCCGTATGTGGTATTCATTTGAA 59.174 34.615 0.00 0.00 44.79 2.69
385 387 7.338196 ACATCCGTATGTGGTATTCATTTGAAA 59.662 33.333 0.00 0.00 44.79 2.69
386 388 7.873719 TCCGTATGTGGTATTCATTTGAAAT 57.126 32.000 0.00 0.00 37.61 2.17
387 389 7.925993 TCCGTATGTGGTATTCATTTGAAATC 58.074 34.615 0.00 0.00 37.61 2.17
388 390 7.773224 TCCGTATGTGGTATTCATTTGAAATCT 59.227 33.333 0.00 0.00 37.61 2.40
389 391 8.070171 CCGTATGTGGTATTCATTTGAAATCTC 58.930 37.037 0.00 0.00 37.61 2.75
390 392 8.830580 CGTATGTGGTATTCATTTGAAATCTCT 58.169 33.333 0.00 0.00 37.61 3.10
421 423 9.453830 AGATAAATATTTAGGAACAGAGGGAGT 57.546 33.333 13.15 0.00 0.00 3.85
491 497 8.904834 TGCCACTGTACTAGTTTAATTGAAAAA 58.095 29.630 0.00 0.00 37.60 1.94
492 498 9.908152 GCCACTGTACTAGTTTAATTGAAAAAT 57.092 29.630 0.00 0.00 37.60 1.82
515 521 2.334977 TCAGCCCAAGAACAACTCCTA 58.665 47.619 0.00 0.00 0.00 2.94
547 553 2.301346 CTTGAAGCCCAGTCAAGTGTT 58.699 47.619 6.09 0.00 44.58 3.32
552 558 1.843421 CCCAGTCAAGTGTTCCCCA 59.157 57.895 0.00 0.00 0.00 4.96
578 590 1.373435 CCTAACCCACACGCTTCCA 59.627 57.895 0.00 0.00 0.00 3.53
707 732 2.827642 GCATGGCACCTCTGCTCC 60.828 66.667 3.63 0.00 43.66 4.70
1056 1158 2.737252 GGAATCTGTGGACTTCGTGTTC 59.263 50.000 0.00 0.00 0.00 3.18
1121 1223 1.880340 CGACGAAGCAGCTCATCCC 60.880 63.158 0.00 0.00 0.00 3.85
1125 1227 1.227497 GAAGCAGCTCATCCCCGAG 60.227 63.158 0.00 0.00 36.02 4.63
1197 1299 1.066787 GCGGTCTACTTCAAAGGAGCT 60.067 52.381 0.00 0.00 36.89 4.09
1447 1552 2.158959 GTGTCGATGCCGGAGTTCG 61.159 63.158 5.05 10.43 36.24 3.95
1462 1567 0.928229 GTTCGTCAAGAAGCACACGT 59.072 50.000 0.00 0.00 39.95 4.49
1574 1679 2.488153 GTGTCACCAGGGCTTTCAATAC 59.512 50.000 0.00 0.00 0.00 1.89
1809 4307 2.306847 GTGTTGTTCCTGGGTCATGTT 58.693 47.619 0.00 0.00 0.00 2.71
2021 4534 4.169826 GATTCATGCCCAGGAATCCCCT 62.170 54.545 19.46 0.00 46.80 4.79
2041 4554 1.705186 TGAGAAAGAAACTCCTGGGGG 59.295 52.381 0.00 0.00 33.95 5.40
2058 4571 2.924421 GGGGGCAACAATTGTTTCAAA 58.076 42.857 21.10 0.00 35.83 2.69
2109 4622 2.498481 CAGATGTCCCCATGTGCAATTT 59.502 45.455 0.00 0.00 35.80 1.82
2113 4626 3.706183 TGTCCCCATGTGCAATTTATGA 58.294 40.909 0.00 0.00 0.00 2.15
2152 4665 5.664294 TGGCAACATATTTCTGCTCATTT 57.336 34.783 0.00 0.00 46.17 2.32
2154 4667 5.419788 TGGCAACATATTTCTGCTCATTTCT 59.580 36.000 0.00 0.00 46.17 2.52
2158 4671 6.939132 ACATATTTCTGCTCATTTCTCTGG 57.061 37.500 0.00 0.00 0.00 3.86
2192 4705 3.314635 CAGCTAGATTTTCAGGTGGATGC 59.685 47.826 0.00 0.00 36.78 3.91
2193 4706 3.054139 AGCTAGATTTTCAGGTGGATGCA 60.054 43.478 0.00 0.00 0.00 3.96
2194 4707 3.314635 GCTAGATTTTCAGGTGGATGCAG 59.685 47.826 0.00 0.00 0.00 4.41
2195 4708 3.726557 AGATTTTCAGGTGGATGCAGA 57.273 42.857 0.00 0.00 0.00 4.26
2196 4709 4.038271 AGATTTTCAGGTGGATGCAGAA 57.962 40.909 0.00 0.00 0.00 3.02
2197 4710 4.015084 AGATTTTCAGGTGGATGCAGAAG 58.985 43.478 0.00 0.00 0.00 2.85
2198 4711 1.538047 TTTCAGGTGGATGCAGAAGC 58.462 50.000 0.00 0.00 42.57 3.86
2209 4722 2.391389 GCAGAAGCAGCGGTGGTAC 61.391 63.158 20.75 6.52 41.58 3.34
2220 4733 0.868602 CGGTGGTACGTTGCGGATAG 60.869 60.000 0.00 0.00 0.00 2.08
2233 4746 1.923204 GCGGATAGCAGCATCTATTCG 59.077 52.381 16.87 16.87 45.97 3.34
2238 4751 2.906691 AGCAGCATCTATTCGAAGCT 57.093 45.000 3.35 3.28 46.80 3.74
2248 4761 6.253298 GCATCTATTCGAAGCTGATATCTGTC 59.747 42.308 3.35 4.25 33.71 3.51
2253 4766 3.006217 TCGAAGCTGATATCTGTCATGGG 59.994 47.826 10.85 0.00 0.00 4.00
2258 4771 3.326006 GCTGATATCTGTCATGGGAAGGA 59.674 47.826 10.85 0.00 0.00 3.36
2260 4773 5.688500 GCTGATATCTGTCATGGGAAGGAAA 60.689 44.000 10.85 0.00 0.00 3.13
2261 4774 6.520021 TGATATCTGTCATGGGAAGGAAAT 57.480 37.500 3.98 0.00 0.00 2.17
2266 4779 1.753073 GTCATGGGAAGGAAATGGCAG 59.247 52.381 0.00 0.00 0.00 4.85
2268 4781 1.753073 CATGGGAAGGAAATGGCAGAC 59.247 52.381 0.00 0.00 0.00 3.51
2291 4805 3.119316 ACGGATGTCATGTGTCTCTTCTC 60.119 47.826 0.00 0.00 0.00 2.87
2295 4809 4.780275 TGTCATGTGTCTCTTCTCTGAG 57.220 45.455 0.00 0.00 35.52 3.35
2299 4813 3.865011 TGTGTCTCTTCTCTGAGATGC 57.135 47.619 8.42 0.00 43.84 3.91
2307 4821 0.605083 TCTCTGAGATGCGCAACAGT 59.395 50.000 28.13 11.04 0.00 3.55
2310 4824 0.952497 CTGAGATGCGCAACAGTGGT 60.952 55.000 17.11 0.00 0.00 4.16
2330 4844 1.598130 GCAAGCCAGACACTTCGGT 60.598 57.895 0.00 0.00 0.00 4.69
2344 4858 6.381994 AGACACTTCGGTATACAATTCCCTTA 59.618 38.462 5.01 0.00 0.00 2.69
2346 4860 7.215085 ACACTTCGGTATACAATTCCCTTATC 58.785 38.462 5.01 0.00 0.00 1.75
2349 4863 4.834496 TCGGTATACAATTCCCTTATCGGT 59.166 41.667 5.01 0.00 0.00 4.69
2363 4877 1.590932 ATCGGTGCTCATCTGCATTC 58.409 50.000 0.00 0.00 45.23 2.67
2369 4883 1.022735 GCTCATCTGCATTCACTGGG 58.977 55.000 0.00 0.00 0.00 4.45
2370 4884 1.676746 CTCATCTGCATTCACTGGGG 58.323 55.000 0.00 0.00 0.00 4.96
2371 4885 0.256752 TCATCTGCATTCACTGGGGG 59.743 55.000 0.00 0.00 0.00 5.40
2395 4909 4.557496 GCAAGAGTAAGGCTTTGGTGAAAG 60.557 45.833 4.45 0.00 41.49 2.62
2403 4917 2.428888 CTTTGGTGAAAGCTCTTGGC 57.571 50.000 0.00 0.00 42.19 4.52
2428 4942 2.133281 TGACAAGATGAAGGGCATGG 57.867 50.000 0.00 0.00 37.34 3.66
2491 5005 0.668706 CTCTTGAGGGTGTGTGCTCG 60.669 60.000 0.00 0.00 0.00 5.03
2498 5012 2.815647 GTGTGTGCTCGGGCTAGC 60.816 66.667 9.62 6.04 43.08 3.42
2515 5029 1.593209 GCGACACGAAACAGGTGGA 60.593 57.895 0.00 0.00 39.69 4.02
2524 5038 2.884639 CGAAACAGGTGGACATCCTTTT 59.115 45.455 0.00 0.00 36.82 2.27
2545 5059 2.092212 TCAAGGATCTGGATGAAAGCCC 60.092 50.000 0.00 0.00 46.54 5.19
2546 5060 1.600058 AGGATCTGGATGAAAGCCCA 58.400 50.000 0.00 0.00 46.54 5.36
2547 5061 1.493871 AGGATCTGGATGAAAGCCCAG 59.506 52.381 0.00 0.00 46.54 4.45
2548 5062 1.213926 GGATCTGGATGAAAGCCCAGT 59.786 52.381 0.00 0.00 46.54 4.00
2549 5063 2.570135 GATCTGGATGAAAGCCCAGTC 58.430 52.381 0.00 0.00 46.54 3.51
2550 5064 1.661463 TCTGGATGAAAGCCCAGTCT 58.339 50.000 0.00 0.00 46.54 3.24
2551 5065 1.556911 TCTGGATGAAAGCCCAGTCTC 59.443 52.381 0.00 0.00 46.54 3.36
2558 5072 2.225242 TGAAAGCCCAGTCTCTCTCTCT 60.225 50.000 0.00 0.00 0.00 3.10
2560 5074 3.297134 AAGCCCAGTCTCTCTCTCTAG 57.703 52.381 0.00 0.00 0.00 2.43
2568 5082 7.556844 CCCAGTCTCTCTCTCTAGATATCTAC 58.443 46.154 8.44 0.00 0.00 2.59
2603 5118 5.453339 GGAGTGATTGACGGATATGGAAGAA 60.453 44.000 0.00 0.00 0.00 2.52
2631 5146 4.339748 TGATCAAACGGATGGAATTTGGA 58.660 39.130 0.00 0.00 36.00 3.53
2637 5152 2.158608 ACGGATGGAATTTGGATCCTCC 60.159 50.000 14.23 11.97 37.85 4.30
2653 5168 1.557832 CCTCCGTCAATAAACCCAGGA 59.442 52.381 0.00 0.00 0.00 3.86
2666 5181 0.607489 CCCAGGAGAGTGCAAACCTG 60.607 60.000 17.27 17.27 46.37 4.00
2696 5211 6.606796 TCTGCAAGAGAGTCATCTAGAGATTT 59.393 38.462 0.00 0.00 38.67 2.17
2698 5213 7.040494 TGCAAGAGAGTCATCTAGAGATTTTG 58.960 38.462 0.00 0.00 35.30 2.44
2699 5214 6.018832 GCAAGAGAGTCATCTAGAGATTTTGC 60.019 42.308 0.00 3.25 35.30 3.68
2710 5225 8.618677 CATCTAGAGATTTTGCAAGCAATTCTA 58.381 33.333 16.07 14.54 32.56 2.10
2760 5275 3.670377 GCGTTGGGACCAGTTGGC 61.670 66.667 0.00 0.00 39.32 4.52
2770 5285 4.069232 CAGTTGGCGCCTCCGAGA 62.069 66.667 29.70 1.94 37.80 4.04
2811 5326 4.977347 CCCAATTCAAATTTTGCAAGCAAC 59.023 37.500 7.03 0.00 35.46 4.17
2818 5333 5.824624 TCAAATTTTGCAAGCAACCCAAATA 59.175 32.000 7.03 0.00 35.46 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.897969 GGAAGAGGTGTCCTAGTTGTCA 59.102 50.000 0.00 0.00 31.76 3.58
59 60 8.338259 CCTAAAATCAATAGTTGAACCATCTCG 58.662 37.037 0.00 0.00 43.95 4.04
66 67 7.391148 TGCCTCCTAAAATCAATAGTTGAAC 57.609 36.000 0.00 0.00 43.95 3.18
69 70 7.572523 TCATGCCTCCTAAAATCAATAGTTG 57.427 36.000 0.00 0.00 0.00 3.16
96 97 0.881118 CTTGTTAGCGGCACATGGTT 59.119 50.000 1.45 0.00 0.00 3.67
103 104 1.975660 ACCTTTTCTTGTTAGCGGCA 58.024 45.000 1.45 0.00 0.00 5.69
105 106 3.007635 CCCTACCTTTTCTTGTTAGCGG 58.992 50.000 0.00 0.00 0.00 5.52
106 107 3.435671 CACCCTACCTTTTCTTGTTAGCG 59.564 47.826 0.00 0.00 0.00 4.26
174 175 8.581578 AGTTTTGTTCAAAGGAAAACTAACTCA 58.418 29.630 0.00 0.00 44.30 3.41
178 179 9.936759 ATTCAGTTTTGTTCAAAGGAAAACTAA 57.063 25.926 0.00 0.00 44.31 2.24
227 229 5.527214 TGCGGGTAACATTCAATATTCTCAG 59.473 40.000 0.00 0.00 39.74 3.35
284 286 9.832445 AGTCACTTGTTTAAATCTGTAGAAAGA 57.168 29.630 0.00 0.00 0.00 2.52
291 293 8.922676 CGTATGTAGTCACTTGTTTAAATCTGT 58.077 33.333 0.00 0.00 0.00 3.41
292 294 8.380644 CCGTATGTAGTCACTTGTTTAAATCTG 58.619 37.037 0.00 0.00 0.00 2.90
293 295 8.308931 TCCGTATGTAGTCACTTGTTTAAATCT 58.691 33.333 0.00 0.00 0.00 2.40
294 296 8.470040 TCCGTATGTAGTCACTTGTTTAAATC 57.530 34.615 0.00 0.00 0.00 2.17
295 297 7.064253 GCTCCGTATGTAGTCACTTGTTTAAAT 59.936 37.037 0.00 0.00 0.00 1.40
296 298 6.366877 GCTCCGTATGTAGTCACTTGTTTAAA 59.633 38.462 0.00 0.00 0.00 1.52
297 299 5.865552 GCTCCGTATGTAGTCACTTGTTTAA 59.134 40.000 0.00 0.00 0.00 1.52
298 300 5.047872 TGCTCCGTATGTAGTCACTTGTTTA 60.048 40.000 0.00 0.00 0.00 2.01
299 301 4.243270 GCTCCGTATGTAGTCACTTGTTT 58.757 43.478 0.00 0.00 0.00 2.83
300 302 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
301 303 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
302 304 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
303 305 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
304 306 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
305 307 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
306 308 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
307 309 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
308 310 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
309 311 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
310 312 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
311 313 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
312 314 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
313 315 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
314 316 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
315 317 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
316 318 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
317 319 7.066766 AGAGTGTAGATTCATTCATTTTGCTCC 59.933 37.037 0.00 0.00 0.00 4.70
318 320 7.983307 AGAGTGTAGATTCATTCATTTTGCTC 58.017 34.615 0.00 0.00 0.00 4.26
319 321 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
347 349 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
349 351 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
350 352 9.470399 AATACCACATACGGATGTATATAGACA 57.530 33.333 14.23 2.07 44.82 3.41
351 353 9.947669 GAATACCACATACGGATGTATATAGAC 57.052 37.037 14.23 6.59 44.82 2.59
352 354 9.689501 TGAATACCACATACGGATGTATATAGA 57.310 33.333 14.23 2.64 44.82 1.98
356 358 9.430623 CAAATGAATACCACATACGGATGTATA 57.569 33.333 14.23 9.59 44.82 1.47
357 359 8.154203 TCAAATGAATACCACATACGGATGTAT 58.846 33.333 14.23 7.46 44.82 2.29
358 360 7.501844 TCAAATGAATACCACATACGGATGTA 58.498 34.615 14.23 0.00 44.82 2.29
359 361 7.338196 TTTCAAATGAATACCACATACGGATGT 59.662 33.333 7.68 7.68 39.20 3.06
360 362 6.859420 TCAAATGAATACCACATACGGATG 57.141 37.500 5.94 5.94 39.16 3.51
361 363 7.873719 TTTCAAATGAATACCACATACGGAT 57.126 32.000 0.00 0.00 33.54 4.18
362 364 7.773224 AGATTTCAAATGAATACCACATACGGA 59.227 33.333 0.00 0.00 33.54 4.69
363 365 7.930217 AGATTTCAAATGAATACCACATACGG 58.070 34.615 0.00 0.00 33.54 4.02
364 366 8.830580 AGAGATTTCAAATGAATACCACATACG 58.169 33.333 0.00 0.00 33.54 3.06
395 397 9.453830 ACTCCCTCTGTTCCTAAATATTTATCT 57.546 33.333 8.34 0.00 0.00 1.98
398 400 9.725206 ACTACTCCCTCTGTTCCTAAATATTTA 57.275 33.333 7.66 7.66 0.00 1.40
399 401 8.625467 ACTACTCCCTCTGTTCCTAAATATTT 57.375 34.615 5.89 5.89 0.00 1.40
400 402 8.625467 AACTACTCCCTCTGTTCCTAAATATT 57.375 34.615 0.00 0.00 0.00 1.28
401 403 8.625467 AAACTACTCCCTCTGTTCCTAAATAT 57.375 34.615 0.00 0.00 0.00 1.28
402 404 8.445361 AAAACTACTCCCTCTGTTCCTAAATA 57.555 34.615 0.00 0.00 0.00 1.40
403 405 6.954352 AAACTACTCCCTCTGTTCCTAAAT 57.046 37.500 0.00 0.00 0.00 1.40
404 406 6.758806 AAAACTACTCCCTCTGTTCCTAAA 57.241 37.500 0.00 0.00 0.00 1.85
405 407 6.758806 AAAAACTACTCCCTCTGTTCCTAA 57.241 37.500 0.00 0.00 0.00 2.69
459 465 8.904099 ATTAAACTAGTACAGTGGCATATTCC 57.096 34.615 0.00 0.00 37.63 3.01
491 497 4.018050 AGGAGTTGTTCTTGGGCTGAATAT 60.018 41.667 0.00 0.00 0.00 1.28
492 498 3.330701 AGGAGTTGTTCTTGGGCTGAATA 59.669 43.478 0.00 0.00 0.00 1.75
495 501 1.140312 AGGAGTTGTTCTTGGGCTGA 58.860 50.000 0.00 0.00 0.00 4.26
499 505 2.420129 CCGGATAGGAGTTGTTCTTGGG 60.420 54.545 0.00 0.00 45.00 4.12
500 506 2.420129 CCCGGATAGGAGTTGTTCTTGG 60.420 54.545 0.73 0.00 45.00 3.61
515 521 3.338250 TTCAAGCCCAGCCCGGAT 61.338 61.111 0.73 0.00 36.56 4.18
547 553 1.672529 GGTTAGGTAGGGTTTGGGGA 58.327 55.000 0.00 0.00 0.00 4.81
552 558 1.348696 CGTGTGGGTTAGGTAGGGTTT 59.651 52.381 0.00 0.00 0.00 3.27
578 590 3.322466 CGCCTCCCCTGGAACACT 61.322 66.667 0.00 0.00 0.00 3.55
583 595 4.804420 ATGAGCGCCTCCCCTGGA 62.804 66.667 2.29 0.00 0.00 3.86
584 596 4.247380 GATGAGCGCCTCCCCTGG 62.247 72.222 2.29 0.00 0.00 4.45
1032 1134 0.108615 CGAAGTCCACAGATTCCGCT 60.109 55.000 0.00 0.00 0.00 5.52
1098 1200 4.342987 AGCTGCTTCGTCGCGTCA 62.343 61.111 5.77 0.00 0.00 4.35
1152 1254 3.159858 AAGGACCACCACCGTGTCG 62.160 63.158 0.00 0.00 38.41 4.35
1153 1255 1.597027 CAAGGACCACCACCGTGTC 60.597 63.158 0.00 0.00 38.41 3.67
1154 1256 2.508928 CAAGGACCACCACCGTGT 59.491 61.111 0.00 0.00 38.41 4.49
1160 1262 2.203280 CGTTGGCAAGGACCACCA 60.203 61.111 14.44 0.00 40.19 4.17
1180 1282 3.997681 GACCAAGCTCCTTTGAAGTAGAC 59.002 47.826 0.00 0.00 0.00 2.59
1197 1299 3.235481 TCGAACGGCTGGGACCAA 61.235 61.111 0.00 0.00 0.00 3.67
1323 1425 1.079503 CGTTCTTGTAGGGCAGCTTC 58.920 55.000 0.00 0.00 0.00 3.86
1447 1552 1.853319 CGGACGTGTGCTTCTTGAC 59.147 57.895 0.00 0.00 0.00 3.18
1574 1679 1.377725 ATGCCTGAGAAGTTGCCGG 60.378 57.895 0.00 0.00 0.00 6.13
1696 1813 2.901839 GACCCACACTAGTAGTCCCAAA 59.098 50.000 0.00 0.00 0.00 3.28
1809 4307 4.288626 AGTTAGCCCAGTTGAGGATTAACA 59.711 41.667 0.00 0.00 33.48 2.41
2021 4534 1.705186 CCCCCAGGAGTTTCTTTCTCA 59.295 52.381 0.00 0.00 34.04 3.27
2041 4554 9.949174 ATTAGAAAATTTGAAACAATTGTTGCC 57.051 25.926 23.93 18.11 38.44 4.52
2109 4622 4.218200 CCAACAGCAACTCCACAAATCATA 59.782 41.667 0.00 0.00 0.00 2.15
2113 4626 1.069049 GCCAACAGCAACTCCACAAAT 59.931 47.619 0.00 0.00 42.97 2.32
2134 4647 6.888632 ACCAGAGAAATGAGCAGAAATATGTT 59.111 34.615 0.00 0.00 0.00 2.71
2139 4652 3.442977 GCACCAGAGAAATGAGCAGAAAT 59.557 43.478 0.00 0.00 0.00 2.17
2192 4705 2.094659 CGTACCACCGCTGCTTCTG 61.095 63.158 0.00 0.00 0.00 3.02
2193 4706 2.095978 AACGTACCACCGCTGCTTCT 62.096 55.000 0.00 0.00 0.00 2.85
2194 4707 1.666872 AACGTACCACCGCTGCTTC 60.667 57.895 0.00 0.00 0.00 3.86
2195 4708 1.959226 CAACGTACCACCGCTGCTT 60.959 57.895 0.00 0.00 0.00 3.91
2196 4709 2.357034 CAACGTACCACCGCTGCT 60.357 61.111 0.00 0.00 0.00 4.24
2197 4710 4.084888 GCAACGTACCACCGCTGC 62.085 66.667 0.00 0.00 41.86 5.25
2198 4711 3.773630 CGCAACGTACCACCGCTG 61.774 66.667 0.00 0.00 0.00 5.18
2200 4713 2.887463 TATCCGCAACGTACCACCGC 62.887 60.000 0.00 0.00 0.00 5.68
2201 4714 0.868602 CTATCCGCAACGTACCACCG 60.869 60.000 0.00 0.00 0.00 4.94
2202 4715 1.149964 GCTATCCGCAACGTACCACC 61.150 60.000 0.00 0.00 38.92 4.61
2203 4716 2.294728 GCTATCCGCAACGTACCAC 58.705 57.895 0.00 0.00 38.92 4.16
2204 4717 4.819082 GCTATCCGCAACGTACCA 57.181 55.556 0.00 0.00 38.92 3.25
2223 4736 6.098679 ACAGATATCAGCTTCGAATAGATGC 58.901 40.000 5.32 7.57 46.72 3.91
2233 4746 4.613925 TCCCATGACAGATATCAGCTTC 57.386 45.455 5.32 0.00 30.46 3.86
2238 4751 5.974156 TTTCCTTCCCATGACAGATATCA 57.026 39.130 5.32 0.00 0.00 2.15
2239 4752 5.709164 CCATTTCCTTCCCATGACAGATATC 59.291 44.000 0.00 0.00 0.00 1.63
2244 4757 1.753073 GCCATTTCCTTCCCATGACAG 59.247 52.381 0.00 0.00 0.00 3.51
2248 4761 1.753073 GTCTGCCATTTCCTTCCCATG 59.247 52.381 0.00 0.00 0.00 3.66
2253 4766 0.804989 CCGTGTCTGCCATTTCCTTC 59.195 55.000 0.00 0.00 0.00 3.46
2258 4771 3.650647 ACATCCGTGTCTGCCATTT 57.349 47.368 0.00 0.00 31.41 2.32
2268 4781 2.662006 AGAGACACATGACATCCGTG 57.338 50.000 0.00 4.74 37.78 4.94
2284 4798 1.925847 GTTGCGCATCTCAGAGAAGAG 59.074 52.381 12.75 2.87 36.97 2.85
2291 4805 0.952497 ACCACTGTTGCGCATCTCAG 60.952 55.000 25.26 25.26 0.00 3.35
2295 4809 4.539152 CAACCACTGTTGCGCATC 57.461 55.556 12.75 12.06 44.86 3.91
2307 4821 0.395586 AAGTGTCTGGCTTGCAACCA 60.396 50.000 16.56 16.56 35.40 3.67
2310 4824 1.165907 CCGAAGTGTCTGGCTTGCAA 61.166 55.000 0.00 0.00 0.00 4.08
2330 4844 5.305902 TGAGCACCGATAAGGGAATTGTATA 59.694 40.000 0.00 0.00 46.96 1.47
2369 4883 1.177401 CAAAGCCTTACTCTTGCCCC 58.823 55.000 0.00 0.00 0.00 5.80
2370 4884 1.177401 CCAAAGCCTTACTCTTGCCC 58.823 55.000 0.00 0.00 0.00 5.36
2371 4885 1.541588 CACCAAAGCCTTACTCTTGCC 59.458 52.381 0.00 0.00 0.00 4.52
2372 4886 2.504367 TCACCAAAGCCTTACTCTTGC 58.496 47.619 0.00 0.00 0.00 4.01
2395 4909 5.124457 TCATCTTGTCAAAATAGCCAAGAGC 59.876 40.000 7.00 0.00 44.49 4.09
2400 4914 4.706476 CCCTTCATCTTGTCAAAATAGCCA 59.294 41.667 0.00 0.00 0.00 4.75
2403 4917 5.902613 TGCCCTTCATCTTGTCAAAATAG 57.097 39.130 0.00 0.00 0.00 1.73
2412 4926 2.295885 GTCTCCATGCCCTTCATCTTG 58.704 52.381 0.00 0.00 31.79 3.02
2416 4930 1.133575 CCATGTCTCCATGCCCTTCAT 60.134 52.381 0.00 0.00 45.90 2.57
2428 4942 2.298729 GGCTGGTATCTCTCCATGTCTC 59.701 54.545 0.00 0.00 34.26 3.36
2433 4947 2.088104 TTCGGCTGGTATCTCTCCAT 57.912 50.000 0.00 0.00 34.26 3.41
2467 4981 0.987294 ACACACCCTCAAGAGGATGG 59.013 55.000 17.57 7.44 46.88 3.51
2482 4996 4.435436 CGCTAGCCCGAGCACACA 62.435 66.667 9.66 0.00 42.99 3.72
2491 5005 1.352156 CTGTTTCGTGTCGCTAGCCC 61.352 60.000 9.66 0.04 0.00 5.19
2498 5012 0.528901 TGTCCACCTGTTTCGTGTCG 60.529 55.000 0.00 0.00 0.00 4.35
2524 5038 2.092212 GGGCTTTCATCCAGATCCTTGA 60.092 50.000 0.00 0.00 0.00 3.02
2545 5059 7.258441 CGGTAGATATCTAGAGAGAGAGACTG 58.742 46.154 12.87 1.48 34.35 3.51
2546 5060 6.127423 GCGGTAGATATCTAGAGAGAGAGACT 60.127 46.154 12.87 0.00 34.35 3.24
2547 5061 6.040878 GCGGTAGATATCTAGAGAGAGAGAC 58.959 48.000 12.87 0.00 34.35 3.36
2548 5062 5.717654 TGCGGTAGATATCTAGAGAGAGAGA 59.282 44.000 12.87 0.00 34.35 3.10
2549 5063 5.972935 TGCGGTAGATATCTAGAGAGAGAG 58.027 45.833 12.87 0.80 34.35 3.20
2550 5064 6.553953 ATGCGGTAGATATCTAGAGAGAGA 57.446 41.667 12.87 0.00 34.35 3.10
2551 5065 9.990360 TTATATGCGGTAGATATCTAGAGAGAG 57.010 37.037 12.87 2.96 34.35 3.20
2558 5072 9.067986 CACTCCATTATATGCGGTAGATATCTA 57.932 37.037 8.44 8.44 0.00 1.98
2560 5074 7.941919 TCACTCCATTATATGCGGTAGATATC 58.058 38.462 0.00 0.00 0.00 1.63
2568 5082 4.091945 CGTCAATCACTCCATTATATGCGG 59.908 45.833 0.00 0.00 0.00 5.69
2603 5118 1.958579 CCATCCGTTTGATCATGCCAT 59.041 47.619 0.00 0.00 0.00 4.40
2631 5146 2.172717 CCTGGGTTTATTGACGGAGGAT 59.827 50.000 0.00 0.00 0.00 3.24
2637 5152 3.262420 CACTCTCCTGGGTTTATTGACG 58.738 50.000 0.00 0.00 0.00 4.35
2653 5168 3.209410 CAGAGTTTCAGGTTTGCACTCT 58.791 45.455 0.00 0.00 41.57 3.24
2696 5211 4.897140 AGCCATTTTAGAATTGCTTGCAA 58.103 34.783 10.57 10.57 40.27 4.08
2698 5213 5.654497 ACTAGCCATTTTAGAATTGCTTGC 58.346 37.500 9.47 0.00 40.27 4.01
2699 5214 7.315142 TGAACTAGCCATTTTAGAATTGCTTG 58.685 34.615 9.47 9.98 40.27 4.01
2710 5225 3.917988 GCTTGCTTGAACTAGCCATTTT 58.082 40.909 5.90 0.00 40.49 1.82
2719 5234 4.342092 ACTTAACATTGGCTTGCTTGAACT 59.658 37.500 0.00 0.00 0.00 3.01
2799 5314 4.142609 TGTATTTGGGTTGCTTGCAAAA 57.857 36.364 9.75 1.41 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.