Multiple sequence alignment - TraesCS6D01G048900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G048900 chr6D 100.000 6020 0 0 1 6020 23735723 23741742 0.000000e+00 11117.0
1 TraesCS6D01G048900 chr6D 80.843 1352 170 48 2945 4251 389982492 389983799 0.000000e+00 979.0
2 TraesCS6D01G048900 chr6D 88.841 699 41 16 5344 6020 23443633 23442950 0.000000e+00 824.0
3 TraesCS6D01G048900 chr6D 95.349 215 9 1 675 889 421063987 421063774 2.080000e-89 340.0
4 TraesCS6D01G048900 chr6D 94.860 214 9 2 675 888 355877320 355877109 3.480000e-87 333.0
5 TraesCS6D01G048900 chr6D 93.333 210 14 0 675 884 94051391 94051600 1.630000e-80 311.0
6 TraesCS6D01G048900 chr6D 91.429 210 18 0 675 884 100482049 100481840 7.630000e-74 289.0
7 TraesCS6D01G048900 chr6D 90.952 210 19 0 675 884 38520446 38520655 3.550000e-72 283.0
8 TraesCS6D01G048900 chr6D 95.413 109 5 0 592 700 94051242 94051350 2.230000e-39 174.0
9 TraesCS6D01G048900 chr6D 81.448 221 27 9 1792 2001 460588021 460588238 1.040000e-37 169.0
10 TraesCS6D01G048900 chr6D 96.970 99 3 0 5922 6020 31778534 31778436 3.730000e-37 167.0
11 TraesCS6D01G048900 chr6D 96.970 99 3 0 5922 6020 458106499 458106401 3.730000e-37 167.0
12 TraesCS6D01G048900 chr6D 94.340 106 6 0 592 697 32632629 32632734 4.830000e-36 163.0
13 TraesCS6D01G048900 chr6D 92.174 115 8 1 587 700 461429130 461429016 1.740000e-35 161.0
14 TraesCS6D01G048900 chr6D 86.719 128 15 2 1792 1918 291144656 291144530 2.260000e-29 141.0
15 TraesCS6D01G048900 chr6A 94.055 2910 124 21 2450 5343 22347674 22350550 0.000000e+00 4370.0
16 TraesCS6D01G048900 chr6A 92.063 1134 74 6 3631 4751 22264719 22265849 0.000000e+00 1581.0
17 TraesCS6D01G048900 chr6A 79.974 1518 204 56 2778 4251 536435188 536436649 0.000000e+00 1027.0
18 TraesCS6D01G048900 chr6A 86.710 933 83 25 883 1794 22260167 22261079 0.000000e+00 998.0
19 TraesCS6D01G048900 chr6A 89.985 689 29 17 2453 3138 22261423 22262074 0.000000e+00 854.0
20 TraesCS6D01G048900 chr6A 93.776 482 24 5 1306 1786 22346714 22347190 0.000000e+00 719.0
21 TraesCS6D01G048900 chr6A 93.658 473 27 2 4744 5213 22270896 22271368 0.000000e+00 704.0
22 TraesCS6D01G048900 chr6A 91.196 443 27 6 3204 3643 22263295 22263728 5.200000e-165 592.0
23 TraesCS6D01G048900 chr6A 90.026 391 29 5 207 591 22345900 22346286 1.170000e-136 497.0
24 TraesCS6D01G048900 chr6A 88.728 346 26 3 883 1228 22346276 22346608 1.560000e-110 411.0
25 TraesCS6D01G048900 chr6A 89.007 282 18 2 2049 2330 22347236 22347504 2.690000e-88 337.0
26 TraesCS6D01G048900 chr6A 84.438 347 26 15 178 521 22254532 22254853 3.500000e-82 316.0
27 TraesCS6D01G048900 chr6A 86.245 269 35 2 1308 1575 536434468 536434735 2.120000e-74 291.0
28 TraesCS6D01G048900 chr6A 91.960 199 16 0 2049 2247 22261117 22261315 4.590000e-71 279.0
29 TraesCS6D01G048900 chr6A 96.970 99 3 0 5922 6020 218125884 218125786 3.730000e-37 167.0
30 TraesCS6D01G048900 chr6A 85.156 128 17 2 1792 1918 432523052 432523178 4.900000e-26 130.0
31 TraesCS6D01G048900 chr6A 100.000 34 0 0 558 591 22260144 22260177 5.040000e-06 63.9
32 TraesCS6D01G048900 chr6B 93.161 2939 134 29 2453 5343 38619733 38622652 0.000000e+00 4252.0
33 TraesCS6D01G048900 chr6B 93.328 1289 66 9 3058 4339 46649748 46648473 0.000000e+00 1886.0
34 TraesCS6D01G048900 chr6B 94.009 701 42 0 4469 5169 46626526 46625826 0.000000e+00 1062.0
35 TraesCS6D01G048900 chr6B 86.825 926 58 33 896 1784 46651850 46650952 0.000000e+00 976.0
36 TraesCS6D01G048900 chr6B 82.336 1036 133 24 3236 4251 584224584 584223579 0.000000e+00 854.0
37 TraesCS6D01G048900 chr6B 82.988 964 112 25 4276 5194 584223585 584222629 0.000000e+00 824.0
38 TraesCS6D01G048900 chr6B 89.223 631 42 13 2453 3061 46650449 46649823 0.000000e+00 765.0
39 TraesCS6D01G048900 chr6B 92.668 491 29 5 1308 1794 38618311 38618798 0.000000e+00 701.0
40 TraesCS6D01G048900 chr6B 86.290 620 44 22 1793 2384 38618912 38619518 2.370000e-178 636.0
41 TraesCS6D01G048900 chr6B 92.000 400 20 7 204 591 38617518 38617917 8.820000e-153 551.0
42 TraesCS6D01G048900 chr6B 80.330 727 84 24 5345 6020 158861002 158861720 4.190000e-136 496.0
43 TraesCS6D01G048900 chr6B 89.560 364 22 6 240 591 46652199 46651840 1.190000e-121 448.0
44 TraesCS6D01G048900 chr6B 86.265 415 29 11 2052 2441 46650933 46650522 5.580000e-115 425.0
45 TraesCS6D01G048900 chr6B 83.646 373 18 12 883 1255 38617907 38618236 1.630000e-80 311.0
46 TraesCS6D01G048900 chr6B 93.706 143 5 3 1 142 38596459 38596598 1.700000e-50 211.0
47 TraesCS6D01G048900 chr6B 94.915 118 6 0 1 118 46652569 46652452 1.030000e-42 185.0
48 TraesCS6D01G048900 chr6B 97.980 99 2 0 5922 6020 11761175 11761077 8.020000e-39 172.0
49 TraesCS6D01G048900 chr6B 97.917 96 1 1 5249 5344 46622322 46622228 1.340000e-36 165.0
50 TraesCS6D01G048900 chr6B 80.184 217 32 7 1795 2001 717636904 717637119 1.050000e-32 152.0
51 TraesCS6D01G048900 chr6B 83.951 162 10 7 4331 4480 46627172 46627015 2.260000e-29 141.0
52 TraesCS6D01G048900 chr6B 95.000 60 3 0 5163 5222 46622381 46622322 1.790000e-15 95.3
53 TraesCS6D01G048900 chr3B 93.103 1421 77 6 3572 4979 745006035 745007447 0.000000e+00 2061.0
54 TraesCS6D01G048900 chr3B 90.769 715 46 11 2454 3160 744977372 744978074 0.000000e+00 937.0
55 TraesCS6D01G048900 chr3B 89.320 309 25 7 1439 1743 744976314 744976618 1.220000e-101 381.0
56 TraesCS6D01G048900 chr3B 91.103 281 15 4 3310 3586 744978074 744978348 7.370000e-99 372.0
57 TraesCS6D01G048900 chr3B 82.517 286 30 14 1124 1391 744976032 744976315 3.630000e-57 233.0
58 TraesCS6D01G048900 chr3B 83.761 234 13 6 2196 2404 744976841 744977074 1.320000e-46 198.0
59 TraesCS6D01G048900 chr3B 100.000 38 0 0 2401 2438 744977288 744977325 3.010000e-08 71.3
60 TraesCS6D01G048900 chr7D 93.390 590 30 3 5343 5923 550655386 550654797 0.000000e+00 865.0
61 TraesCS6D01G048900 chr7D 93.051 590 31 3 5344 5923 550649935 550649346 0.000000e+00 854.0
62 TraesCS6D01G048900 chr7D 96.209 211 8 0 675 885 33043357 33043567 4.470000e-91 346.0
63 TraesCS6D01G048900 chr7D 94.884 215 9 2 675 888 585313792 585313579 9.670000e-88 335.0
64 TraesCS6D01G048900 chr7D 94.860 214 9 2 675 887 78505436 78505648 3.480000e-87 333.0
65 TraesCS6D01G048900 chr7D 83.828 303 40 4 591 884 588680478 588680176 4.590000e-71 279.0
66 TraesCS6D01G048900 chr7D 95.536 112 4 1 589 700 585744163 585744273 1.720000e-40 178.0
67 TraesCS6D01G048900 chr7D 80.214 187 26 9 1792 1968 602262463 602262278 4.900000e-26 130.0
68 TraesCS6D01G048900 chr7D 86.441 59 7 1 1994 2052 457180293 457180350 5.040000e-06 63.9
69 TraesCS6D01G048900 chr2D 93.277 595 24 3 5344 5923 451318416 451319009 0.000000e+00 863.0
70 TraesCS6D01G048900 chr2D 92.150 586 31 5 5344 5923 606940406 606939830 0.000000e+00 813.0
71 TraesCS6D01G048900 chr2D 96.244 213 8 0 675 887 311554519 311554307 3.450000e-92 350.0
72 TraesCS6D01G048900 chr2D 96.190 210 8 0 675 884 155167322 155167113 1.610000e-90 344.0
73 TraesCS6D01G048900 chr2D 95.714 210 9 0 675 884 338338711 338338502 7.470000e-89 339.0
74 TraesCS6D01G048900 chr1A 92.110 583 36 4 5344 5923 591732579 591732004 0.000000e+00 813.0
75 TraesCS6D01G048900 chr1A 91.938 583 37 8 5344 5923 591738027 591737452 0.000000e+00 808.0
76 TraesCS6D01G048900 chr1A 90.956 586 42 4 5342 5923 591779863 591779285 0.000000e+00 778.0
77 TraesCS6D01G048900 chr4A 91.400 593 31 11 5343 5923 726403203 726403787 0.000000e+00 795.0
78 TraesCS6D01G048900 chr5A 91.379 580 27 10 5344 5923 17361033 17360477 0.000000e+00 773.0
79 TraesCS6D01G048900 chr5A 90.339 590 38 10 5344 5923 305971398 305970818 0.000000e+00 756.0
80 TraesCS6D01G048900 chr5A 90.846 579 30 10 5345 5923 17366451 17365896 0.000000e+00 754.0
81 TraesCS6D01G048900 chr5A 79.638 221 32 8 1792 2001 286734764 286734982 4.860000e-31 147.0
82 TraesCS6D01G048900 chr5A 78.571 126 25 2 1794 1918 675961042 675961166 1.390000e-11 82.4
83 TraesCS6D01G048900 chr3A 90.816 588 38 7 5345 5923 724965627 724966207 0.000000e+00 773.0
84 TraesCS6D01G048900 chr2A 87.993 583 55 7 5345 5923 759741141 759740570 0.000000e+00 675.0
85 TraesCS6D01G048900 chr3D 96.190 210 8 0 675 884 4501966 4502175 1.610000e-90 344.0
86 TraesCS6D01G048900 chr3D 95.238 210 10 0 675 884 73714662 73714871 3.480000e-87 333.0
87 TraesCS6D01G048900 chr3D 96.396 111 4 0 590 700 4501815 4501925 3.710000e-42 183.0
88 TraesCS6D01G048900 chr3D 96.970 99 3 0 5922 6020 492123878 492123976 3.730000e-37 167.0
89 TraesCS6D01G048900 chr3D 96.970 99 3 0 5922 6020 568523092 568523190 3.730000e-37 167.0
90 TraesCS6D01G048900 chr3D 82.258 186 24 7 1792 1968 14349196 14349011 1.050000e-32 152.0
91 TraesCS6D01G048900 chr3D 84.507 71 11 0 1931 2001 37774814 37774744 3.010000e-08 71.3
92 TraesCS6D01G048900 chr5D 95.327 214 10 0 675 888 274568982 274568769 2.080000e-89 340.0
93 TraesCS6D01G048900 chr5D 95.714 210 9 0 675 884 417035090 417035299 7.470000e-89 339.0
94 TraesCS6D01G048900 chr5D 95.238 210 10 0 675 884 313368021 313367812 3.480000e-87 333.0
95 TraesCS6D01G048900 chr5D 94.762 210 11 0 675 884 44134509 44134300 1.620000e-85 327.0
96 TraesCS6D01G048900 chr5D 83.553 304 41 4 591 885 428835344 428835041 5.940000e-70 276.0
97 TraesCS6D01G048900 chr5D 85.876 177 23 1 1820 1994 289070926 289071102 2.860000e-43 187.0
98 TraesCS6D01G048900 chr5D 95.413 109 5 0 591 699 313368171 313368063 2.230000e-39 174.0
99 TraesCS6D01G048900 chr5D 88.406 138 14 2 565 700 268929549 268929686 1.340000e-36 165.0
100 TraesCS6D01G048900 chr5D 81.034 174 29 4 1792 1961 135660839 135661012 1.050000e-27 135.0
101 TraesCS6D01G048900 chr4D 96.585 205 6 1 690 894 418852936 418852733 7.470000e-89 339.0
102 TraesCS6D01G048900 chr4D 92.891 211 13 2 675 884 94599835 94600044 7.580000e-79 305.0
103 TraesCS6D01G048900 chr4D 92.381 210 16 0 675 884 482718618 482718409 3.530000e-77 300.0
104 TraesCS6D01G048900 chr4D 94.215 121 6 1 581 700 418853077 418852957 3.710000e-42 183.0
105 TraesCS6D01G048900 chr4D 95.413 109 5 0 592 700 308755630 308755738 2.230000e-39 174.0
106 TraesCS6D01G048900 chr4D 93.694 111 7 0 590 700 484620238 484620348 3.730000e-37 167.0
107 TraesCS6D01G048900 chr4D 82.286 175 26 5 1792 1963 215447455 215447283 4.860000e-31 147.0
108 TraesCS6D01G048900 chr1D 95.714 210 9 0 675 884 55033456 55033665 7.470000e-89 339.0
109 TraesCS6D01G048900 chr1D 94.762 210 9 2 675 884 300024339 300024546 5.820000e-85 326.0
110 TraesCS6D01G048900 chr1D 92.381 210 16 0 675 884 487347112 487347321 3.530000e-77 300.0
111 TraesCS6D01G048900 chr1D 91.905 210 17 0 675 884 385115564 385115773 1.640000e-75 294.0
112 TraesCS6D01G048900 chr1D 82.178 303 43 8 592 884 184302558 184302859 3.600000e-62 250.0
113 TraesCS6D01G048900 chr1D 83.936 249 35 4 1814 2059 114136507 114136261 3.630000e-57 233.0
114 TraesCS6D01G048900 chr1D 93.960 149 8 1 675 823 403943848 403943995 2.180000e-54 224.0
115 TraesCS6D01G048900 chr1D 93.985 133 8 0 753 885 347360992 347360860 1.020000e-47 202.0
116 TraesCS6D01G048900 chr1D 93.939 132 8 0 753 884 201296571 201296440 3.680000e-47 200.0
117 TraesCS6D01G048900 chr1D 93.939 132 8 0 753 884 442082650 442082781 3.680000e-47 200.0
118 TraesCS6D01G048900 chr1D 96.364 110 4 0 591 700 487346962 487347071 1.330000e-41 182.0
119 TraesCS6D01G048900 chr1D 85.799 169 24 0 719 887 260402755 260402923 4.790000e-41 180.0
120 TraesCS6D01G048900 chr1D 83.871 186 28 2 1849 2032 268952504 268952689 6.200000e-40 176.0
121 TraesCS6D01G048900 chr1D 95.413 109 5 0 592 700 55033276 55033384 2.230000e-39 174.0
122 TraesCS6D01G048900 chr1D 77.852 298 46 13 591 882 76951853 76951570 3.730000e-37 167.0
123 TraesCS6D01G048900 chr1D 93.636 110 7 0 591 700 433280866 433280757 1.340000e-36 165.0
124 TraesCS6D01G048900 chr1D 92.241 116 9 0 585 700 469540762 469540647 1.340000e-36 165.0
125 TraesCS6D01G048900 chr1D 92.727 110 6 2 592 700 469537019 469537127 2.250000e-34 158.0
126 TraesCS6D01G048900 chr1D 91.743 109 9 0 592 700 94047559 94047667 1.050000e-32 152.0
127 TraesCS6D01G048900 chrUn 90.476 210 20 0 675 884 29082995 29082786 1.650000e-70 278.0
128 TraesCS6D01G048900 chrUn 95.283 106 5 0 595 700 29083141 29083036 1.040000e-37 169.0
129 TraesCS6D01G048900 chrUn 81.364 220 30 10 1792 2001 461776072 461776290 1.040000e-37 169.0
130 TraesCS6D01G048900 chrUn 91.954 87 4 3 590 675 115110325 115110241 1.060000e-22 119.0
131 TraesCS6D01G048900 chrUn 90.588 85 5 3 592 675 115109769 115109851 6.380000e-20 110.0
132 TraesCS6D01G048900 chr1B 84.946 186 26 2 1849 2032 370029299 370029114 2.860000e-43 187.0
133 TraesCS6D01G048900 chr1B 97.980 99 2 0 5922 6020 8598172 8598270 8.020000e-39 172.0
134 TraesCS6D01G048900 chr1B 79.091 220 35 7 1792 2001 624979841 624980059 2.260000e-29 141.0
135 TraesCS6D01G048900 chr2B 80.909 220 31 7 1792 2001 423002473 423002255 4.830000e-36 163.0
136 TraesCS6D01G048900 chr7A 80.000 220 32 8 1792 2001 719410893 719410676 1.050000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G048900 chr6D 23735723 23741742 6019 False 11117.000000 11117 100.000000 1 6020 1 chr6D.!!$F1 6019
1 TraesCS6D01G048900 chr6D 389982492 389983799 1307 False 979.000000 979 80.843000 2945 4251 1 chr6D.!!$F4 1306
2 TraesCS6D01G048900 chr6D 23442950 23443633 683 True 824.000000 824 88.841000 5344 6020 1 chr6D.!!$R1 676
3 TraesCS6D01G048900 chr6A 22345900 22350550 4650 False 1266.800000 4370 91.118400 207 5343 5 chr6A.!!$F5 5136
4 TraesCS6D01G048900 chr6A 22260144 22265849 5705 False 727.983333 1581 91.985667 558 4751 6 chr6A.!!$F4 4193
5 TraesCS6D01G048900 chr6A 536434468 536436649 2181 False 659.000000 1027 83.109500 1308 4251 2 chr6A.!!$F6 2943
6 TraesCS6D01G048900 chr6B 38617518 38622652 5134 False 1290.200000 4252 89.553000 204 5343 5 chr6B.!!$F4 5139
7 TraesCS6D01G048900 chr6B 584222629 584224584 1955 True 839.000000 854 82.662000 3236 5194 2 chr6B.!!$R4 1958
8 TraesCS6D01G048900 chr6B 46648473 46652569 4096 True 780.833333 1886 90.019333 1 4339 6 chr6B.!!$R3 4338
9 TraesCS6D01G048900 chr6B 158861002 158861720 718 False 496.000000 496 80.330000 5345 6020 1 chr6B.!!$F2 675
10 TraesCS6D01G048900 chr6B 46622228 46627172 4944 True 365.825000 1062 92.719250 4331 5344 4 chr6B.!!$R2 1013
11 TraesCS6D01G048900 chr3B 745006035 745007447 1412 False 2061.000000 2061 93.103000 3572 4979 1 chr3B.!!$F1 1407
12 TraesCS6D01G048900 chr3B 744976032 744978348 2316 False 365.383333 937 89.578333 1124 3586 6 chr3B.!!$F2 2462
13 TraesCS6D01G048900 chr7D 550654797 550655386 589 True 865.000000 865 93.390000 5343 5923 1 chr7D.!!$R2 580
14 TraesCS6D01G048900 chr7D 550649346 550649935 589 True 854.000000 854 93.051000 5344 5923 1 chr7D.!!$R1 579
15 TraesCS6D01G048900 chr2D 451318416 451319009 593 False 863.000000 863 93.277000 5344 5923 1 chr2D.!!$F1 579
16 TraesCS6D01G048900 chr2D 606939830 606940406 576 True 813.000000 813 92.150000 5344 5923 1 chr2D.!!$R4 579
17 TraesCS6D01G048900 chr1A 591732004 591732579 575 True 813.000000 813 92.110000 5344 5923 1 chr1A.!!$R1 579
18 TraesCS6D01G048900 chr1A 591737452 591738027 575 True 808.000000 808 91.938000 5344 5923 1 chr1A.!!$R2 579
19 TraesCS6D01G048900 chr1A 591779285 591779863 578 True 778.000000 778 90.956000 5342 5923 1 chr1A.!!$R3 581
20 TraesCS6D01G048900 chr4A 726403203 726403787 584 False 795.000000 795 91.400000 5343 5923 1 chr4A.!!$F1 580
21 TraesCS6D01G048900 chr5A 17360477 17361033 556 True 773.000000 773 91.379000 5344 5923 1 chr5A.!!$R1 579
22 TraesCS6D01G048900 chr5A 305970818 305971398 580 True 756.000000 756 90.339000 5344 5923 1 chr5A.!!$R3 579
23 TraesCS6D01G048900 chr5A 17365896 17366451 555 True 754.000000 754 90.846000 5345 5923 1 chr5A.!!$R2 578
24 TraesCS6D01G048900 chr3A 724965627 724966207 580 False 773.000000 773 90.816000 5345 5923 1 chr3A.!!$F1 578
25 TraesCS6D01G048900 chr2A 759740570 759741141 571 True 675.000000 675 87.993000 5345 5923 1 chr2A.!!$R1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.108138 TTTTTGTTTGCGTGTGGGGG 60.108 50.000 0.00 0.00 0.00 5.40 F
936 1086 0.163788 CCGCTTCGCTATAATTGCCG 59.836 55.000 0.00 0.00 0.00 5.69 F
937 1087 0.859232 CGCTTCGCTATAATTGCCGT 59.141 50.000 0.00 0.00 0.00 5.68 F
1160 1315 1.000827 CTCCTTCTCGTGGATCATCGG 60.001 57.143 8.47 1.63 32.56 4.18 F
1882 2227 1.070821 CTTCAATGACGAGCGCTCAA 58.929 50.000 34.69 20.88 0.00 3.02 F
3276 5556 1.070786 GAATAAGATCGGCGCCCCA 59.929 57.895 23.46 8.29 0.00 4.96 F
4356 7670 2.048601 TCCTGGTAAGACAAACGGGAA 58.951 47.619 0.00 0.00 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 2205 0.742281 AGCGCTCGTCATTGAAGCAT 60.742 50.000 2.64 0.00 0.00 3.79 R
1877 2222 1.069296 TGCACGCTAAACATGTTGAGC 60.069 47.619 30.88 30.88 42.40 4.26 R
2086 2431 1.556911 GTGGATGTGTGGGTGAGATCT 59.443 52.381 0.00 0.00 0.00 2.75 R
2099 2444 2.552315 GTTGTTGGATTGACGTGGATGT 59.448 45.455 0.00 0.00 0.00 3.06 R
3381 5667 1.544691 AGAACCGAGTCGTGCATTACT 59.455 47.619 12.31 3.76 0.00 2.24 R
4358 7672 1.066645 TGCAGCCTCACTCTACATGTG 60.067 52.381 9.11 0.00 36.82 3.21 R
5971 13372 0.460811 CAAGCTCACTCCTATGCGCA 60.461 55.000 14.96 14.96 32.60 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 4.778213 ACTGGTATGTGAATGCCTATGT 57.222 40.909 0.00 0.00 0.00 2.29
96 97 8.850156 GGTATGTGAATGCCTATGTTTTTCTAT 58.150 33.333 0.00 0.00 0.00 1.98
123 124 8.798859 AAAAGTCAGAATTATCACACTATGCT 57.201 30.769 0.00 0.00 0.00 3.79
124 125 9.890629 AAAAGTCAGAATTATCACACTATGCTA 57.109 29.630 0.00 0.00 0.00 3.49
125 126 8.879342 AAGTCAGAATTATCACACTATGCTAC 57.121 34.615 0.00 0.00 0.00 3.58
126 127 8.011844 AGTCAGAATTATCACACTATGCTACA 57.988 34.615 0.00 0.00 0.00 2.74
127 128 8.478066 AGTCAGAATTATCACACTATGCTACAA 58.522 33.333 0.00 0.00 0.00 2.41
128 129 9.265901 GTCAGAATTATCACACTATGCTACAAT 57.734 33.333 0.00 0.00 0.00 2.71
131 132 9.712305 AGAATTATCACACTATGCTACAATACC 57.288 33.333 0.00 0.00 0.00 2.73
132 133 8.848474 AATTATCACACTATGCTACAATACCC 57.152 34.615 0.00 0.00 0.00 3.69
133 134 7.612065 TTATCACACTATGCTACAATACCCT 57.388 36.000 0.00 0.00 0.00 4.34
134 135 5.531122 TCACACTATGCTACAATACCCTC 57.469 43.478 0.00 0.00 0.00 4.30
135 136 5.208890 TCACACTATGCTACAATACCCTCT 58.791 41.667 0.00 0.00 0.00 3.69
136 137 5.302059 TCACACTATGCTACAATACCCTCTC 59.698 44.000 0.00 0.00 0.00 3.20
137 138 5.303078 CACACTATGCTACAATACCCTCTCT 59.697 44.000 0.00 0.00 0.00 3.10
138 139 5.900123 ACACTATGCTACAATACCCTCTCTT 59.100 40.000 0.00 0.00 0.00 2.85
139 140 6.384305 ACACTATGCTACAATACCCTCTCTTT 59.616 38.462 0.00 0.00 0.00 2.52
140 141 7.092846 ACACTATGCTACAATACCCTCTCTTTT 60.093 37.037 0.00 0.00 0.00 2.27
141 142 7.770897 CACTATGCTACAATACCCTCTCTTTTT 59.229 37.037 0.00 0.00 0.00 1.94
142 143 7.770897 ACTATGCTACAATACCCTCTCTTTTTG 59.229 37.037 0.00 0.00 0.00 2.44
143 144 5.876357 TGCTACAATACCCTCTCTTTTTGT 58.124 37.500 0.00 0.00 0.00 2.83
144 145 6.303839 TGCTACAATACCCTCTCTTTTTGTT 58.696 36.000 0.00 0.00 0.00 2.83
145 146 6.775629 TGCTACAATACCCTCTCTTTTTGTTT 59.224 34.615 0.00 0.00 0.00 2.83
146 147 7.084486 GCTACAATACCCTCTCTTTTTGTTTG 58.916 38.462 0.00 0.00 0.00 2.93
147 148 5.842907 ACAATACCCTCTCTTTTTGTTTGC 58.157 37.500 0.00 0.00 0.00 3.68
148 149 4.766404 ATACCCTCTCTTTTTGTTTGCG 57.234 40.909 0.00 0.00 0.00 4.85
149 150 2.375146 ACCCTCTCTTTTTGTTTGCGT 58.625 42.857 0.00 0.00 0.00 5.24
150 151 2.099098 ACCCTCTCTTTTTGTTTGCGTG 59.901 45.455 0.00 0.00 0.00 5.34
151 152 2.099098 CCCTCTCTTTTTGTTTGCGTGT 59.901 45.455 0.00 0.00 0.00 4.49
152 153 3.108144 CCTCTCTTTTTGTTTGCGTGTG 58.892 45.455 0.00 0.00 0.00 3.82
153 154 3.108144 CTCTCTTTTTGTTTGCGTGTGG 58.892 45.455 0.00 0.00 0.00 4.17
154 155 2.159310 TCTCTTTTTGTTTGCGTGTGGG 60.159 45.455 0.00 0.00 0.00 4.61
155 156 1.134965 TCTTTTTGTTTGCGTGTGGGG 60.135 47.619 0.00 0.00 0.00 4.96
156 157 0.108138 TTTTTGTTTGCGTGTGGGGG 60.108 50.000 0.00 0.00 0.00 5.40
181 182 1.054231 GGGGGTATGCTACAGGTACC 58.946 60.000 2.73 2.73 37.69 3.34
185 186 1.612463 GGTATGCTACAGGTACCCTCG 59.388 57.143 8.74 0.00 33.36 4.63
186 187 1.000496 GTATGCTACAGGTACCCTCGC 60.000 57.143 8.74 7.19 0.00 5.03
187 188 1.735376 ATGCTACAGGTACCCTCGCG 61.735 60.000 8.74 0.00 0.00 5.87
188 189 2.413142 GCTACAGGTACCCTCGCGT 61.413 63.158 8.74 1.00 0.00 6.01
189 190 1.432251 CTACAGGTACCCTCGCGTG 59.568 63.158 8.74 2.75 0.00 5.34
190 191 2.001361 CTACAGGTACCCTCGCGTGG 62.001 65.000 20.08 20.08 0.00 4.94
191 192 2.769652 TACAGGTACCCTCGCGTGGT 62.770 60.000 24.30 23.42 39.97 4.16
192 193 3.066814 AGGTACCCTCGCGTGGTC 61.067 66.667 24.30 14.25 37.31 4.02
193 194 3.376078 GGTACCCTCGCGTGGTCA 61.376 66.667 24.30 9.87 37.31 4.02
194 195 2.181021 GTACCCTCGCGTGGTCAG 59.819 66.667 24.30 12.64 37.31 3.51
195 196 3.066190 TACCCTCGCGTGGTCAGG 61.066 66.667 24.30 14.57 37.31 3.86
196 197 3.572447 TACCCTCGCGTGGTCAGGA 62.572 63.158 24.30 4.65 37.31 3.86
197 198 4.436998 CCCTCGCGTGGTCAGGAC 62.437 72.222 24.30 0.00 0.00 3.85
273 405 8.655935 AAATTCCACAATCTTTCTGTAATCCT 57.344 30.769 0.00 0.00 0.00 3.24
332 465 7.186570 AGAATGCAATTAAACCCTGCTAATT 57.813 32.000 0.00 0.00 36.07 1.40
436 585 5.634896 TGATGATGATACGATCACGAGATG 58.365 41.667 0.00 0.00 43.01 2.90
477 626 3.903282 GCCGGCCGTATCCACGTA 61.903 66.667 26.12 0.00 46.96 3.57
521 671 1.408822 GGATTCCAAATGGACTCGGCT 60.409 52.381 12.11 0.00 45.39 5.52
548 698 2.742372 CGTCCCTCCAAACCTGCG 60.742 66.667 0.00 0.00 0.00 5.18
591 741 1.729470 CCCGATCTCCACCTCACTCG 61.729 65.000 0.00 0.00 0.00 4.18
592 742 1.729470 CCGATCTCCACCTCACTCGG 61.729 65.000 0.00 0.00 39.58 4.63
593 743 1.032657 CGATCTCCACCTCACTCGGT 61.033 60.000 0.00 0.00 37.93 4.69
594 744 1.746171 CGATCTCCACCTCACTCGGTA 60.746 57.143 0.00 0.00 34.94 4.02
595 745 2.376109 GATCTCCACCTCACTCGGTAA 58.624 52.381 0.00 0.00 34.94 2.85
596 746 2.297698 TCTCCACCTCACTCGGTAAA 57.702 50.000 0.00 0.00 34.94 2.01
597 747 2.816411 TCTCCACCTCACTCGGTAAAT 58.184 47.619 0.00 0.00 34.94 1.40
598 748 3.170717 TCTCCACCTCACTCGGTAAATT 58.829 45.455 0.00 0.00 34.94 1.82
599 749 3.581332 TCTCCACCTCACTCGGTAAATTT 59.419 43.478 0.00 0.00 34.94 1.82
600 750 3.670625 TCCACCTCACTCGGTAAATTTG 58.329 45.455 0.00 0.00 34.94 2.32
601 751 3.325425 TCCACCTCACTCGGTAAATTTGA 59.675 43.478 0.00 0.00 34.94 2.69
602 752 3.435671 CCACCTCACTCGGTAAATTTGAC 59.564 47.826 0.00 0.00 34.94 3.18
603 753 4.062293 CACCTCACTCGGTAAATTTGACA 58.938 43.478 0.00 0.00 34.94 3.58
604 754 4.513692 CACCTCACTCGGTAAATTTGACAA 59.486 41.667 0.00 0.00 34.94 3.18
605 755 5.008217 CACCTCACTCGGTAAATTTGACAAA 59.992 40.000 2.48 2.48 34.94 2.83
606 756 5.768164 ACCTCACTCGGTAAATTTGACAAAT 59.232 36.000 7.62 7.62 34.94 2.32
607 757 6.264518 ACCTCACTCGGTAAATTTGACAAATT 59.735 34.615 18.41 18.41 42.62 1.82
643 793 9.778993 ATCGAAATCAAATTACAGAATGAACTG 57.221 29.630 0.00 0.00 39.69 3.16
645 795 9.055248 CGAAATCAAATTACAGAATGAACTGTC 57.945 33.333 4.63 0.00 46.36 3.51
646 796 9.346725 GAAATCAAATTACAGAATGAACTGTCC 57.653 33.333 4.63 0.00 46.36 4.02
647 797 6.480524 TCAAATTACAGAATGAACTGTCCG 57.519 37.500 4.63 0.00 46.36 4.79
648 798 5.995282 TCAAATTACAGAATGAACTGTCCGT 59.005 36.000 4.63 0.00 46.36 4.69
649 799 5.862924 AATTACAGAATGAACTGTCCGTG 57.137 39.130 4.63 0.00 46.36 4.94
650 800 4.594123 TTACAGAATGAACTGTCCGTGA 57.406 40.909 4.63 0.00 46.36 4.35
651 801 3.469008 ACAGAATGAACTGTCCGTGAA 57.531 42.857 0.00 0.00 46.36 3.18
652 802 3.804036 ACAGAATGAACTGTCCGTGAAA 58.196 40.909 0.00 0.00 46.36 2.69
653 803 3.560068 ACAGAATGAACTGTCCGTGAAAC 59.440 43.478 0.00 0.00 46.36 2.78
654 804 3.809832 CAGAATGAACTGTCCGTGAAACT 59.190 43.478 0.00 0.00 39.69 2.66
655 805 4.988540 CAGAATGAACTGTCCGTGAAACTA 59.011 41.667 0.00 0.00 39.69 2.24
656 806 5.639506 CAGAATGAACTGTCCGTGAAACTAT 59.360 40.000 0.00 0.00 39.69 2.12
657 807 6.147821 CAGAATGAACTGTCCGTGAAACTATT 59.852 38.462 0.00 0.00 39.69 1.73
658 808 6.710744 AGAATGAACTGTCCGTGAAACTATTT 59.289 34.615 0.00 0.00 31.75 1.40
659 809 5.917541 TGAACTGTCCGTGAAACTATTTC 57.082 39.130 0.00 0.00 40.08 2.17
660 810 5.361427 TGAACTGTCCGTGAAACTATTTCA 58.639 37.500 0.00 0.00 46.68 2.69
667 817 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
668 818 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
669 819 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
670 820 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
671 821 0.246635 ACTATTTCACGCGGCTGACT 59.753 50.000 12.47 0.00 0.00 3.41
672 822 0.924090 CTATTTCACGCGGCTGACTC 59.076 55.000 12.47 0.00 0.00 3.36
673 823 0.530744 TATTTCACGCGGCTGACTCT 59.469 50.000 12.47 0.00 0.00 3.24
674 824 0.320771 ATTTCACGCGGCTGACTCTT 60.321 50.000 12.47 0.00 0.00 2.85
675 825 1.221466 TTTCACGCGGCTGACTCTTG 61.221 55.000 12.47 0.00 0.00 3.02
676 826 3.114616 CACGCGGCTGACTCTTGG 61.115 66.667 12.47 0.00 0.00 3.61
679 829 3.426568 GCGGCTGACTCTTGGCAC 61.427 66.667 0.00 0.00 0.00 5.01
680 830 2.743928 CGGCTGACTCTTGGCACC 60.744 66.667 0.00 0.00 0.00 5.01
681 831 2.753029 GGCTGACTCTTGGCACCT 59.247 61.111 0.00 0.00 0.00 4.00
682 832 1.888436 CGGCTGACTCTTGGCACCTA 61.888 60.000 0.00 0.00 0.00 3.08
683 833 0.324943 GGCTGACTCTTGGCACCTAA 59.675 55.000 0.00 0.00 0.00 2.69
684 834 1.443802 GCTGACTCTTGGCACCTAAC 58.556 55.000 0.00 0.00 0.00 2.34
685 835 1.002544 GCTGACTCTTGGCACCTAACT 59.997 52.381 0.00 0.00 0.00 2.24
686 836 2.933056 GCTGACTCTTGGCACCTAACTC 60.933 54.545 0.00 0.00 0.00 3.01
687 837 2.564947 CTGACTCTTGGCACCTAACTCT 59.435 50.000 0.00 0.00 0.00 3.24
688 838 2.563179 TGACTCTTGGCACCTAACTCTC 59.437 50.000 0.00 0.00 0.00 3.20
689 839 2.563179 GACTCTTGGCACCTAACTCTCA 59.437 50.000 0.00 0.00 0.00 3.27
690 840 2.564947 ACTCTTGGCACCTAACTCTCAG 59.435 50.000 0.00 0.00 0.00 3.35
691 841 1.902508 TCTTGGCACCTAACTCTCAGG 59.097 52.381 0.00 0.00 39.25 3.86
692 842 0.324943 TTGGCACCTAACTCTCAGGC 59.675 55.000 0.00 0.00 36.57 4.85
693 843 1.153549 GGCACCTAACTCTCAGGCG 60.154 63.158 0.00 0.00 36.57 5.52
694 844 1.811679 GCACCTAACTCTCAGGCGC 60.812 63.158 0.00 0.00 36.57 6.53
695 845 1.893786 CACCTAACTCTCAGGCGCT 59.106 57.895 7.64 0.00 36.57 5.92
696 846 0.459237 CACCTAACTCTCAGGCGCTG 60.459 60.000 7.64 3.67 36.57 5.18
697 847 1.520342 CCTAACTCTCAGGCGCTGC 60.520 63.158 7.64 0.00 0.00 5.25
698 848 1.216444 CTAACTCTCAGGCGCTGCA 59.784 57.895 7.64 0.00 0.00 4.41
699 849 1.079819 TAACTCTCAGGCGCTGCAC 60.080 57.895 7.64 0.00 0.00 4.57
709 859 4.081030 CGCTGCACGCTGACTTGG 62.081 66.667 0.00 0.00 36.13 3.61
710 860 3.730761 GCTGCACGCTGACTTGGG 61.731 66.667 0.00 0.00 35.14 4.12
711 861 3.730761 CTGCACGCTGACTTGGGC 61.731 66.667 0.00 0.00 0.00 5.36
712 862 4.560743 TGCACGCTGACTTGGGCA 62.561 61.111 0.00 0.00 0.00 5.36
713 863 4.030452 GCACGCTGACTTGGGCAC 62.030 66.667 0.00 0.00 0.00 5.01
714 864 2.591429 CACGCTGACTTGGGCACA 60.591 61.111 0.00 0.00 0.00 4.57
715 865 1.968017 CACGCTGACTTGGGCACAT 60.968 57.895 0.00 0.00 0.00 3.21
716 866 0.673333 CACGCTGACTTGGGCACATA 60.673 55.000 0.00 0.00 0.00 2.29
717 867 0.253044 ACGCTGACTTGGGCACATAT 59.747 50.000 0.00 0.00 0.00 1.78
718 868 0.659427 CGCTGACTTGGGCACATATG 59.341 55.000 0.00 0.00 0.00 1.78
719 869 1.027357 GCTGACTTGGGCACATATGG 58.973 55.000 7.80 0.00 0.00 2.74
720 870 1.683943 CTGACTTGGGCACATATGGG 58.316 55.000 7.80 3.61 0.00 4.00
721 871 0.998928 TGACTTGGGCACATATGGGT 59.001 50.000 6.86 0.00 0.00 4.51
722 872 1.340893 TGACTTGGGCACATATGGGTG 60.341 52.381 6.86 0.00 41.72 4.61
728 878 3.014036 CACATATGGGTGCGACGC 58.986 61.111 14.19 14.19 31.10 5.19
729 879 1.521457 CACATATGGGTGCGACGCT 60.521 57.895 22.08 2.17 31.67 5.07
730 880 1.521457 ACATATGGGTGCGACGCTG 60.521 57.895 22.08 11.28 31.67 5.18
731 881 2.108976 ATATGGGTGCGACGCTGG 59.891 61.111 22.08 0.00 31.67 4.85
732 882 4.830765 TATGGGTGCGACGCTGGC 62.831 66.667 22.08 10.89 31.67 4.85
745 895 3.833645 CTGGCCGTGTAGCGCCTA 61.834 66.667 2.29 0.00 39.71 3.93
746 896 3.151710 TGGCCGTGTAGCGCCTAT 61.152 61.111 2.29 0.00 39.71 2.57
747 897 2.355956 GGCCGTGTAGCGCCTATC 60.356 66.667 2.29 0.00 39.71 2.08
748 898 2.728817 GCCGTGTAGCGCCTATCT 59.271 61.111 2.29 0.00 39.71 1.98
749 899 1.661821 GCCGTGTAGCGCCTATCTG 60.662 63.158 2.29 0.00 39.71 2.90
750 900 2.030551 CCGTGTAGCGCCTATCTGA 58.969 57.895 2.29 0.00 39.71 3.27
751 901 0.384309 CCGTGTAGCGCCTATCTGAA 59.616 55.000 2.29 0.00 39.71 3.02
752 902 1.202371 CCGTGTAGCGCCTATCTGAAA 60.202 52.381 2.29 0.00 39.71 2.69
753 903 2.120232 CGTGTAGCGCCTATCTGAAAG 58.880 52.381 2.29 0.00 0.00 2.62
754 904 2.474816 GTGTAGCGCCTATCTGAAAGG 58.525 52.381 2.29 0.00 37.17 3.11
761 911 1.737838 CCTATCTGAAAGGCGTTGCA 58.262 50.000 0.00 0.00 0.00 4.08
762 912 1.398390 CCTATCTGAAAGGCGTTGCAC 59.602 52.381 0.00 0.00 0.00 4.57
763 913 2.076100 CTATCTGAAAGGCGTTGCACA 58.924 47.619 0.00 0.00 0.00 4.57
764 914 0.877071 ATCTGAAAGGCGTTGCACAG 59.123 50.000 0.00 5.49 0.00 3.66
765 915 0.463654 TCTGAAAGGCGTTGCACAGT 60.464 50.000 15.48 0.00 0.00 3.55
766 916 1.202592 TCTGAAAGGCGTTGCACAGTA 60.203 47.619 15.48 5.77 0.00 2.74
767 917 1.195448 CTGAAAGGCGTTGCACAGTAG 59.805 52.381 0.00 0.00 0.00 2.57
768 918 0.517316 GAAAGGCGTTGCACAGTAGG 59.483 55.000 0.00 0.00 0.00 3.18
769 919 0.889186 AAAGGCGTTGCACAGTAGGG 60.889 55.000 0.00 0.00 0.00 3.53
770 920 2.032071 GGCGTTGCACAGTAGGGT 59.968 61.111 0.00 0.00 0.00 4.34
771 921 2.325082 GGCGTTGCACAGTAGGGTG 61.325 63.158 0.00 0.00 41.72 4.61
772 922 1.597027 GCGTTGCACAGTAGGGTGT 60.597 57.895 0.00 0.00 40.89 4.16
774 924 1.227999 CGTTGCACAGTAGGGTGTGG 61.228 60.000 6.16 0.00 46.73 4.17
775 925 1.228124 TTGCACAGTAGGGTGTGGC 60.228 57.895 6.16 0.03 46.73 5.01
776 926 1.988982 TTGCACAGTAGGGTGTGGCA 61.989 55.000 6.16 2.40 46.73 4.92
777 927 1.966451 GCACAGTAGGGTGTGGCAC 60.966 63.158 11.55 11.55 46.73 5.01
801 951 3.358707 GGCGGGCGCTACACAAAA 61.359 61.111 7.64 0.00 41.60 2.44
802 952 2.175811 GCGGGCGCTACACAAAAG 59.824 61.111 7.64 0.00 38.26 2.27
803 953 2.867472 CGGGCGCTACACAAAAGG 59.133 61.111 7.64 0.00 0.00 3.11
804 954 2.686816 CGGGCGCTACACAAAAGGG 61.687 63.158 7.64 0.00 0.00 3.95
805 955 1.602605 GGGCGCTACACAAAAGGGT 60.603 57.895 7.64 0.00 0.00 4.34
806 956 1.583495 GGGCGCTACACAAAAGGGTC 61.583 60.000 7.64 0.00 0.00 4.46
807 957 0.887387 GGCGCTACACAAAAGGGTCA 60.887 55.000 7.64 0.00 32.25 4.02
808 958 0.517316 GCGCTACACAAAAGGGTCAG 59.483 55.000 0.00 0.00 0.00 3.51
809 959 1.156736 CGCTACACAAAAGGGTCAGG 58.843 55.000 0.00 0.00 0.00 3.86
810 960 1.534729 GCTACACAAAAGGGTCAGGG 58.465 55.000 0.00 0.00 0.00 4.45
811 961 1.073284 GCTACACAAAAGGGTCAGGGA 59.927 52.381 0.00 0.00 0.00 4.20
812 962 2.488347 GCTACACAAAAGGGTCAGGGAA 60.488 50.000 0.00 0.00 0.00 3.97
813 963 2.364972 ACACAAAAGGGTCAGGGAAG 57.635 50.000 0.00 0.00 0.00 3.46
814 964 1.569072 ACACAAAAGGGTCAGGGAAGT 59.431 47.619 0.00 0.00 0.00 3.01
815 965 1.956477 CACAAAAGGGTCAGGGAAGTG 59.044 52.381 0.00 0.00 0.00 3.16
816 966 1.850345 ACAAAAGGGTCAGGGAAGTGA 59.150 47.619 0.00 0.00 0.00 3.41
817 967 2.243736 ACAAAAGGGTCAGGGAAGTGAA 59.756 45.455 0.00 0.00 0.00 3.18
818 968 3.295973 CAAAAGGGTCAGGGAAGTGAAA 58.704 45.455 0.00 0.00 0.00 2.69
819 969 3.897505 CAAAAGGGTCAGGGAAGTGAAAT 59.102 43.478 0.00 0.00 0.00 2.17
820 970 5.076873 CAAAAGGGTCAGGGAAGTGAAATA 58.923 41.667 0.00 0.00 0.00 1.40
821 971 4.576330 AAGGGTCAGGGAAGTGAAATAG 57.424 45.455 0.00 0.00 0.00 1.73
822 972 3.532102 AGGGTCAGGGAAGTGAAATAGT 58.468 45.455 0.00 0.00 0.00 2.12
823 973 3.916989 AGGGTCAGGGAAGTGAAATAGTT 59.083 43.478 0.00 0.00 0.00 2.24
824 974 4.354087 AGGGTCAGGGAAGTGAAATAGTTT 59.646 41.667 0.00 0.00 0.00 2.66
825 975 4.700692 GGGTCAGGGAAGTGAAATAGTTTC 59.299 45.833 0.00 0.00 40.08 2.78
826 976 4.392138 GGTCAGGGAAGTGAAATAGTTTCG 59.608 45.833 0.00 0.00 42.55 3.46
834 984 4.483476 GTGAAATAGTTTCGCAACCAGT 57.517 40.909 10.21 0.00 46.56 4.00
835 985 4.855531 GTGAAATAGTTTCGCAACCAGTT 58.144 39.130 10.21 0.00 46.56 3.16
836 986 4.909880 GTGAAATAGTTTCGCAACCAGTTC 59.090 41.667 10.21 0.41 46.56 3.01
837 987 4.576873 TGAAATAGTTTCGCAACCAGTTCA 59.423 37.500 5.34 5.34 42.55 3.18
838 988 5.240623 TGAAATAGTTTCGCAACCAGTTCAT 59.759 36.000 5.34 0.00 42.55 2.57
839 989 5.705609 AATAGTTTCGCAACCAGTTCATT 57.294 34.783 0.00 0.00 32.70 2.57
840 990 3.626028 AGTTTCGCAACCAGTTCATTC 57.374 42.857 0.00 0.00 32.70 2.67
841 991 3.214328 AGTTTCGCAACCAGTTCATTCT 58.786 40.909 0.00 0.00 32.70 2.40
842 992 3.003689 AGTTTCGCAACCAGTTCATTCTG 59.996 43.478 0.00 0.00 32.70 3.02
843 993 2.254546 TCGCAACCAGTTCATTCTGT 57.745 45.000 0.00 0.00 34.02 3.41
844 994 1.872952 TCGCAACCAGTTCATTCTGTG 59.127 47.619 0.00 0.00 34.02 3.66
845 995 1.872952 CGCAACCAGTTCATTCTGTGA 59.127 47.619 0.00 0.00 34.02 3.58
846 996 2.485426 CGCAACCAGTTCATTCTGTGAT 59.515 45.455 0.00 0.00 36.54 3.06
847 997 3.058016 CGCAACCAGTTCATTCTGTGATT 60.058 43.478 0.00 0.00 36.54 2.57
848 998 4.557296 CGCAACCAGTTCATTCTGTGATTT 60.557 41.667 0.00 0.00 36.54 2.17
849 999 4.682860 GCAACCAGTTCATTCTGTGATTTG 59.317 41.667 0.00 0.00 36.54 2.32
850 1000 5.507817 GCAACCAGTTCATTCTGTGATTTGA 60.508 40.000 0.00 0.00 36.54 2.69
851 1001 6.684686 CAACCAGTTCATTCTGTGATTTGAT 58.315 36.000 0.00 0.00 36.54 2.57
852 1002 6.906157 ACCAGTTCATTCTGTGATTTGATT 57.094 33.333 0.00 0.00 36.54 2.57
853 1003 7.294017 ACCAGTTCATTCTGTGATTTGATTT 57.706 32.000 0.00 0.00 36.54 2.17
854 1004 7.373493 ACCAGTTCATTCTGTGATTTGATTTC 58.627 34.615 0.00 0.00 36.54 2.17
855 1005 6.525628 CCAGTTCATTCTGTGATTTGATTTCG 59.474 38.462 0.00 0.00 36.54 3.46
856 1006 7.300320 CAGTTCATTCTGTGATTTGATTTCGA 58.700 34.615 0.00 0.00 36.54 3.71
857 1007 7.966753 CAGTTCATTCTGTGATTTGATTTCGAT 59.033 33.333 0.00 0.00 36.54 3.59
858 1008 8.517878 AGTTCATTCTGTGATTTGATTTCGATT 58.482 29.630 0.00 0.00 36.54 3.34
859 1009 9.773328 GTTCATTCTGTGATTTGATTTCGATTA 57.227 29.630 0.00 0.00 36.54 1.75
864 1014 9.613428 TTCTGTGATTTGATTTCGATTATAGGT 57.387 29.630 0.00 0.00 0.00 3.08
865 1015 9.261180 TCTGTGATTTGATTTCGATTATAGGTC 57.739 33.333 0.00 0.00 0.00 3.85
866 1016 8.956533 TGTGATTTGATTTCGATTATAGGTCA 57.043 30.769 0.00 0.00 0.00 4.02
867 1017 9.389755 TGTGATTTGATTTCGATTATAGGTCAA 57.610 29.630 0.00 0.00 0.00 3.18
883 1033 7.671495 ATAGGTCAAAATTGTCAAATTTGCC 57.329 32.000 17.69 19.32 43.63 4.52
884 1034 5.435291 AGGTCAAAATTGTCAAATTTGCCA 58.565 33.333 25.16 5.45 43.63 4.92
885 1035 5.296531 AGGTCAAAATTGTCAAATTTGCCAC 59.703 36.000 25.16 17.79 43.63 5.01
886 1036 5.505489 GGTCAAAATTGTCAAATTTGCCACC 60.505 40.000 21.86 19.01 43.63 4.61
887 1037 5.296531 GTCAAAATTGTCAAATTTGCCACCT 59.703 36.000 17.69 0.00 43.63 4.00
888 1038 5.526846 TCAAAATTGTCAAATTTGCCACCTC 59.473 36.000 17.69 0.97 43.63 3.85
889 1039 4.686191 AATTGTCAAATTTGCCACCTCA 57.314 36.364 13.54 0.00 31.76 3.86
890 1040 3.451141 TTGTCAAATTTGCCACCTCAC 57.549 42.857 13.54 5.26 0.00 3.51
891 1041 2.665165 TGTCAAATTTGCCACCTCACT 58.335 42.857 13.54 0.00 0.00 3.41
892 1042 2.622942 TGTCAAATTTGCCACCTCACTC 59.377 45.455 13.54 0.00 0.00 3.51
916 1066 2.759114 CACACTCCACAGCCCCAT 59.241 61.111 0.00 0.00 0.00 4.00
936 1086 0.163788 CCGCTTCGCTATAATTGCCG 59.836 55.000 0.00 0.00 0.00 5.69
937 1087 0.859232 CGCTTCGCTATAATTGCCGT 59.141 50.000 0.00 0.00 0.00 5.68
938 1088 1.260561 CGCTTCGCTATAATTGCCGTT 59.739 47.619 0.00 0.00 0.00 4.44
1160 1315 1.000827 CTCCTTCTCGTGGATCATCGG 60.001 57.143 8.47 1.63 32.56 4.18
1256 1414 1.931635 ACCCAGGTTCAGAGTCTCTC 58.068 55.000 0.00 0.00 0.00 3.20
1257 1415 1.148027 ACCCAGGTTCAGAGTCTCTCA 59.852 52.381 0.00 0.00 32.06 3.27
1258 1416 2.225496 ACCCAGGTTCAGAGTCTCTCAT 60.225 50.000 0.00 0.00 32.06 2.90
1259 1417 3.011821 ACCCAGGTTCAGAGTCTCTCATA 59.988 47.826 0.00 0.00 32.06 2.15
1260 1418 3.636300 CCCAGGTTCAGAGTCTCTCATAG 59.364 52.174 0.00 0.00 32.06 2.23
1261 1419 4.531854 CCAGGTTCAGAGTCTCTCATAGA 58.468 47.826 0.00 0.00 32.06 1.98
1304 1471 3.248363 TCATAATGCATTTCTCCGCTTCG 59.752 43.478 18.75 0.00 0.00 3.79
1768 1993 5.684184 GGTACAATCTTTCACGTCCAAAAAC 59.316 40.000 0.00 0.00 0.00 2.43
1806 2150 6.971602 TCATGTTGGTATAAAAAGACGCAAA 58.028 32.000 0.00 0.00 0.00 3.68
1809 2153 5.531659 TGTTGGTATAAAAAGACGCAAAGGA 59.468 36.000 0.00 0.00 0.00 3.36
1810 2154 5.616488 TGGTATAAAAAGACGCAAAGGAC 57.384 39.130 0.00 0.00 0.00 3.85
1837 2181 3.803778 CCAACAAATCTCAGCCAACAAAC 59.196 43.478 0.00 0.00 0.00 2.93
1840 2184 5.280654 ACAAATCTCAGCCAACAAACAAT 57.719 34.783 0.00 0.00 0.00 2.71
1841 2185 5.051816 ACAAATCTCAGCCAACAAACAATG 58.948 37.500 0.00 0.00 0.00 2.82
1842 2186 4.942761 AATCTCAGCCAACAAACAATGT 57.057 36.364 0.00 0.00 46.82 2.71
1852 2197 5.114780 CCAACAAACAATGTCAATCCAACA 58.885 37.500 0.00 0.00 42.99 3.33
1860 2205 8.415950 AACAATGTCAATCCAACAACCTATAA 57.584 30.769 0.00 0.00 0.00 0.98
1877 2222 3.867055 ATAATGCTTCAATGACGAGCG 57.133 42.857 2.91 0.00 39.23 5.03
1882 2227 1.070821 CTTCAATGACGAGCGCTCAA 58.929 50.000 34.69 20.88 0.00 3.02
1970 2315 9.865321 TTGATATCCTACCTAATATTAACGCAC 57.135 33.333 0.00 0.00 0.00 5.34
1975 2320 8.373048 TCCTACCTAATATTAACGCACAATTG 57.627 34.615 3.24 3.24 0.00 2.32
2047 2392 4.077063 TGCATTGCACGTACACATTTAG 57.923 40.909 7.38 0.00 31.71 1.85
2099 2444 1.728323 TCCAACAGATCTCACCCACA 58.272 50.000 0.00 0.00 0.00 4.17
2282 2805 9.672673 ATTACTATCCAATTATGTCCATGTAGC 57.327 33.333 0.00 0.00 0.00 3.58
2315 2838 8.159447 TGCTATCTAATTATCTCCAAACAGCAT 58.841 33.333 0.00 0.00 0.00 3.79
2438 3239 7.722795 TCGTCTTAAAAGTTGTCATCATGAA 57.277 32.000 0.00 0.00 0.00 2.57
2441 3242 8.282592 CGTCTTAAAAGTTGTCATCATGAAAGA 58.717 33.333 0.00 0.00 0.00 2.52
2445 3246 9.748708 TTAAAAGTTGTCATCATGAAAGAAAGG 57.251 29.630 0.00 0.00 0.00 3.11
2447 3248 5.634118 AGTTGTCATCATGAAAGAAAGGGA 58.366 37.500 0.00 0.00 0.00 4.20
2451 3381 5.884232 TGTCATCATGAAAGAAAGGGATCTG 59.116 40.000 0.00 0.00 0.00 2.90
2476 3407 3.512033 AGAAAGAGATCTTAGCGCGTT 57.488 42.857 8.43 3.54 34.61 4.84
2677 3610 1.292992 GGGCGTCGATTTCGGTAAAT 58.707 50.000 0.00 0.00 38.03 1.40
2791 3762 2.649190 TGCACCAAACTGTTCTGCTTA 58.351 42.857 14.88 0.00 0.00 3.09
2862 3833 2.303890 TGTGACCGTCTCAGAGGTACTA 59.696 50.000 0.00 0.00 41.55 1.82
3246 5526 7.535997 TCACCGCGCATATAATATATAGATCC 58.464 38.462 8.75 0.00 0.00 3.36
3276 5556 1.070786 GAATAAGATCGGCGCCCCA 59.929 57.895 23.46 8.29 0.00 4.96
3360 5644 5.163109 TGCAGGTGATCATCCATACCATAAA 60.163 40.000 1.24 0.00 35.66 1.40
3419 5710 4.091424 GTTCTACTTTTCATGTGCATCGC 58.909 43.478 0.00 0.00 0.00 4.58
3560 5857 7.993183 AGAAACTTCATCTCTGTTTCCAAGTTA 59.007 33.333 12.33 0.00 46.07 2.24
3561 5858 8.697507 AAACTTCATCTCTGTTTCCAAGTTAT 57.302 30.769 0.00 0.00 32.72 1.89
3562 5859 8.697507 AACTTCATCTCTGTTTCCAAGTTATT 57.302 30.769 0.00 0.00 32.25 1.40
3563 5860 8.697507 ACTTCATCTCTGTTTCCAAGTTATTT 57.302 30.769 0.00 0.00 0.00 1.40
3607 5913 3.992643 TGAACACATTTTTGCAGATGGG 58.007 40.909 7.30 7.30 32.93 4.00
3721 7030 5.982356 TCTCCTGAAGATAAATCACCACAG 58.018 41.667 0.00 0.00 0.00 3.66
3792 7104 3.313526 CCTGCTGCAACATATACTGAACC 59.686 47.826 3.02 0.00 0.00 3.62
4201 7515 4.464008 AGACCAAGCAAAGTTTCATCTGA 58.536 39.130 0.00 0.00 0.00 3.27
4347 7661 4.876107 CACACATTGGTATCCTGGTAAGAC 59.124 45.833 0.00 0.00 0.00 3.01
4356 7670 2.048601 TCCTGGTAAGACAAACGGGAA 58.951 47.619 0.00 0.00 0.00 3.97
4377 7691 1.649664 CACATGTAGAGTGAGGCTGC 58.350 55.000 0.00 0.00 39.30 5.25
4384 7698 0.034380 AGAGTGAGGCTGCAATGCAT 60.034 50.000 8.91 0.00 38.13 3.96
4467 7808 8.352201 TGATCATTTAACTTTGGAAGTGAACTG 58.648 33.333 0.00 3.20 41.91 3.16
4577 8416 0.250510 TGTGCTACAATGCGGTCCAA 60.251 50.000 0.00 0.00 35.36 3.53
4762 8602 2.259204 CCAATGCACACTTGGCGG 59.741 61.111 4.67 0.00 36.98 6.13
4789 8630 3.429960 GCATCCCTTTTCTTTGGCTGATC 60.430 47.826 0.00 0.00 0.00 2.92
5021 8871 5.184864 TGTTGTTTGAAATCCAGTGTTGAGT 59.815 36.000 0.00 0.00 0.00 3.41
5169 9024 1.034356 ATGTGTGTGTGCAGTGCATT 58.966 45.000 22.87 0.00 41.91 3.56
5175 12481 1.210870 GTGTGCAGTGCATTTGTTGG 58.789 50.000 22.87 0.00 41.91 3.77
5227 12533 0.041090 ATTCCAAAATCCGGGCAGGT 59.959 50.000 0.00 0.00 41.99 4.00
5229 12535 2.573340 CAAAATCCGGGCAGGTGC 59.427 61.111 0.00 0.00 41.99 5.01
5328 12635 8.082242 CCGTAAAATATCCATCCTTCAATTTCC 58.918 37.037 0.00 0.00 0.00 3.13
5453 12760 4.926244 ACGATCTAACAGAGCATGTACTG 58.074 43.478 15.84 15.84 43.00 2.74
5487 12794 5.154932 AGAAACATCTACGCATATCGCTAC 58.845 41.667 0.00 0.00 43.23 3.58
5732 13095 1.991339 TACAGGATCCGGAGAGGCGA 61.991 60.000 19.55 0.00 40.77 5.54
5919 13302 3.681835 GCGTGGAGAGACGTGGGT 61.682 66.667 0.00 0.00 41.54 4.51
5971 13372 1.886542 GTTCCTGACCGGCAAAAAGAT 59.113 47.619 0.00 0.00 0.00 2.40
5989 13390 0.467384 ATGCGCATAGGAGTGAGCTT 59.533 50.000 24.02 0.00 43.96 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 8.893727 GCATTCACATACCAGTAGACTAAAAAT 58.106 33.333 0.00 0.00 0.00 1.82
106 107 8.936864 GGGTATTGTAGCATAGTGTGATAATTC 58.063 37.037 0.00 0.00 29.08 2.17
118 119 7.630082 ACAAAAAGAGAGGGTATTGTAGCATA 58.370 34.615 0.00 0.00 29.89 3.14
119 120 6.485171 ACAAAAAGAGAGGGTATTGTAGCAT 58.515 36.000 0.00 0.00 29.89 3.79
120 121 5.876357 ACAAAAAGAGAGGGTATTGTAGCA 58.124 37.500 0.00 0.00 29.89 3.49
121 122 6.819397 AACAAAAAGAGAGGGTATTGTAGC 57.181 37.500 0.00 0.00 31.33 3.58
122 123 7.084486 GCAAACAAAAAGAGAGGGTATTGTAG 58.916 38.462 0.00 0.00 31.33 2.74
123 124 6.293735 CGCAAACAAAAAGAGAGGGTATTGTA 60.294 38.462 0.00 0.00 31.33 2.41
124 125 5.507315 CGCAAACAAAAAGAGAGGGTATTGT 60.507 40.000 0.00 0.00 32.78 2.71
125 126 4.917415 CGCAAACAAAAAGAGAGGGTATTG 59.083 41.667 0.00 0.00 0.00 1.90
126 127 4.583073 ACGCAAACAAAAAGAGAGGGTATT 59.417 37.500 0.00 0.00 0.00 1.89
127 128 4.023193 CACGCAAACAAAAAGAGAGGGTAT 60.023 41.667 0.00 0.00 0.00 2.73
128 129 3.314080 CACGCAAACAAAAAGAGAGGGTA 59.686 43.478 0.00 0.00 0.00 3.69
129 130 2.099098 CACGCAAACAAAAAGAGAGGGT 59.901 45.455 0.00 0.00 0.00 4.34
130 131 2.099098 ACACGCAAACAAAAAGAGAGGG 59.901 45.455 0.00 0.00 0.00 4.30
131 132 3.108144 CACACGCAAACAAAAAGAGAGG 58.892 45.455 0.00 0.00 0.00 3.69
132 133 3.108144 CCACACGCAAACAAAAAGAGAG 58.892 45.455 0.00 0.00 0.00 3.20
133 134 2.159310 CCCACACGCAAACAAAAAGAGA 60.159 45.455 0.00 0.00 0.00 3.10
134 135 2.192624 CCCACACGCAAACAAAAAGAG 58.807 47.619 0.00 0.00 0.00 2.85
135 136 1.134965 CCCCACACGCAAACAAAAAGA 60.135 47.619 0.00 0.00 0.00 2.52
136 137 1.285578 CCCCACACGCAAACAAAAAG 58.714 50.000 0.00 0.00 0.00 2.27
137 138 0.108138 CCCCCACACGCAAACAAAAA 60.108 50.000 0.00 0.00 0.00 1.94
138 139 1.517832 CCCCCACACGCAAACAAAA 59.482 52.632 0.00 0.00 0.00 2.44
139 140 3.211288 CCCCCACACGCAAACAAA 58.789 55.556 0.00 0.00 0.00 2.83
162 163 1.054231 GGTACCTGTAGCATACCCCC 58.946 60.000 4.06 0.00 42.12 5.40
177 178 2.181021 CTGACCACGCGAGGGTAC 59.819 66.667 26.38 16.63 39.19 3.34
178 179 3.066190 CCTGACCACGCGAGGGTA 61.066 66.667 26.38 13.45 39.19 3.69
179 180 4.988716 TCCTGACCACGCGAGGGT 62.989 66.667 26.38 24.73 42.61 4.34
180 181 4.436998 GTCCTGACCACGCGAGGG 62.437 72.222 26.38 21.74 0.00 4.30
190 191 2.617774 GGATACGACTAGTGGTCCTGAC 59.382 54.545 14.31 3.19 41.64 3.51
191 192 2.240414 TGGATACGACTAGTGGTCCTGA 59.760 50.000 14.31 0.00 41.64 3.86
192 193 2.651455 TGGATACGACTAGTGGTCCTG 58.349 52.381 14.31 0.00 41.64 3.86
193 194 3.223435 CATGGATACGACTAGTGGTCCT 58.777 50.000 14.31 3.34 41.64 3.85
194 195 2.957006 ACATGGATACGACTAGTGGTCC 59.043 50.000 14.31 10.88 41.64 4.46
195 196 4.360563 CAACATGGATACGACTAGTGGTC 58.639 47.826 14.31 1.00 41.28 4.02
196 197 3.132289 CCAACATGGATACGACTAGTGGT 59.868 47.826 15.24 15.24 40.96 4.16
197 198 3.717707 CCAACATGGATACGACTAGTGG 58.282 50.000 0.00 0.25 40.96 4.00
198 199 3.123804 GCCAACATGGATACGACTAGTG 58.876 50.000 0.00 0.00 40.96 2.74
199 200 2.223735 CGCCAACATGGATACGACTAGT 60.224 50.000 0.00 0.00 40.96 2.57
200 201 2.223735 ACGCCAACATGGATACGACTAG 60.224 50.000 0.00 0.00 40.96 2.57
201 202 1.752498 ACGCCAACATGGATACGACTA 59.248 47.619 0.00 0.00 40.96 2.59
202 203 0.535335 ACGCCAACATGGATACGACT 59.465 50.000 0.00 0.00 40.96 4.18
264 396 8.879342 ATTCGTCTCAATCTTTAGGATTACAG 57.121 34.615 0.00 0.00 42.20 2.74
436 585 2.129785 GTCCTTGCCATGGCCATCC 61.130 63.158 33.44 13.91 41.09 3.51
521 671 2.650116 GGAGGGACGCTGAGAAGCA 61.650 63.158 0.00 0.00 34.41 3.91
532 682 1.966451 CACGCAGGTTTGGAGGGAC 60.966 63.158 0.00 0.00 0.00 4.46
617 767 9.778993 CAGTTCATTCTGTAATTTGATTTCGAT 57.221 29.630 0.00 0.00 0.00 3.59
618 768 8.783093 ACAGTTCATTCTGTAATTTGATTTCGA 58.217 29.630 0.00 0.00 45.31 3.71
619 769 8.955061 ACAGTTCATTCTGTAATTTGATTTCG 57.045 30.769 0.00 0.00 45.31 3.46
620 770 9.346725 GGACAGTTCATTCTGTAATTTGATTTC 57.653 33.333 0.00 0.00 46.81 2.17
621 771 8.023128 CGGACAGTTCATTCTGTAATTTGATTT 58.977 33.333 0.00 0.00 46.81 2.17
622 772 7.174946 ACGGACAGTTCATTCTGTAATTTGATT 59.825 33.333 0.00 0.00 46.81 2.57
623 773 6.655003 ACGGACAGTTCATTCTGTAATTTGAT 59.345 34.615 0.00 0.00 46.81 2.57
624 774 5.995282 ACGGACAGTTCATTCTGTAATTTGA 59.005 36.000 0.00 0.00 46.81 2.69
625 775 6.073276 TCACGGACAGTTCATTCTGTAATTTG 60.073 38.462 0.00 0.00 46.81 2.32
626 776 5.995282 TCACGGACAGTTCATTCTGTAATTT 59.005 36.000 0.00 0.00 46.81 1.82
627 777 5.547465 TCACGGACAGTTCATTCTGTAATT 58.453 37.500 0.00 0.00 46.81 1.40
628 778 5.147330 TCACGGACAGTTCATTCTGTAAT 57.853 39.130 0.00 0.00 46.81 1.89
629 779 4.594123 TCACGGACAGTTCATTCTGTAA 57.406 40.909 0.00 0.00 46.81 2.41
630 780 4.594123 TTCACGGACAGTTCATTCTGTA 57.406 40.909 0.00 0.00 46.81 2.74
632 782 3.809832 AGTTTCACGGACAGTTCATTCTG 59.190 43.478 0.00 0.00 40.80 3.02
633 783 4.073293 AGTTTCACGGACAGTTCATTCT 57.927 40.909 0.00 0.00 0.00 2.40
634 784 6.481954 AATAGTTTCACGGACAGTTCATTC 57.518 37.500 0.00 0.00 0.00 2.67
635 785 6.485313 TGAAATAGTTTCACGGACAGTTCATT 59.515 34.615 1.24 0.00 44.21 2.57
636 786 5.995282 TGAAATAGTTTCACGGACAGTTCAT 59.005 36.000 1.24 0.00 44.21 2.57
637 787 5.361427 TGAAATAGTTTCACGGACAGTTCA 58.639 37.500 1.24 0.00 44.21 3.18
638 788 5.917541 TGAAATAGTTTCACGGACAGTTC 57.082 39.130 1.24 0.00 44.21 3.01
648 798 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
649 799 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
650 800 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
651 801 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
652 802 0.246635 AGTCAGCCGCGTGAAATAGT 59.753 50.000 4.92 0.00 0.00 2.12
653 803 0.924090 GAGTCAGCCGCGTGAAATAG 59.076 55.000 4.92 0.00 0.00 1.73
654 804 0.530744 AGAGTCAGCCGCGTGAAATA 59.469 50.000 4.92 0.00 0.00 1.40
655 805 0.320771 AAGAGTCAGCCGCGTGAAAT 60.321 50.000 4.92 0.00 0.00 2.17
656 806 1.069090 AAGAGTCAGCCGCGTGAAA 59.931 52.632 4.92 0.00 0.00 2.69
657 807 1.664649 CAAGAGTCAGCCGCGTGAA 60.665 57.895 4.92 0.00 0.00 3.18
658 808 2.049156 CAAGAGTCAGCCGCGTGA 60.049 61.111 4.92 0.00 0.00 4.35
659 809 3.114616 CCAAGAGTCAGCCGCGTG 61.115 66.667 4.92 0.00 0.00 5.34
662 812 3.426568 GTGCCAAGAGTCAGCCGC 61.427 66.667 0.00 0.00 0.00 6.53
663 813 1.888436 TAGGTGCCAAGAGTCAGCCG 61.888 60.000 0.00 0.00 0.00 5.52
664 814 0.324943 TTAGGTGCCAAGAGTCAGCC 59.675 55.000 0.00 0.00 0.00 4.85
665 815 1.002544 AGTTAGGTGCCAAGAGTCAGC 59.997 52.381 0.00 0.00 0.00 4.26
666 816 2.564947 AGAGTTAGGTGCCAAGAGTCAG 59.435 50.000 0.00 0.00 0.00 3.51
667 817 2.563179 GAGAGTTAGGTGCCAAGAGTCA 59.437 50.000 0.00 0.00 0.00 3.41
668 818 2.563179 TGAGAGTTAGGTGCCAAGAGTC 59.437 50.000 0.00 0.00 0.00 3.36
669 819 2.564947 CTGAGAGTTAGGTGCCAAGAGT 59.435 50.000 0.00 0.00 0.00 3.24
670 820 2.093764 CCTGAGAGTTAGGTGCCAAGAG 60.094 54.545 0.00 0.00 0.00 2.85
671 821 1.902508 CCTGAGAGTTAGGTGCCAAGA 59.097 52.381 0.00 0.00 0.00 3.02
672 822 1.677217 GCCTGAGAGTTAGGTGCCAAG 60.677 57.143 0.00 0.00 37.64 3.61
673 823 0.324943 GCCTGAGAGTTAGGTGCCAA 59.675 55.000 0.00 0.00 37.64 4.52
674 824 1.888436 CGCCTGAGAGTTAGGTGCCA 61.888 60.000 0.00 0.00 38.81 4.92
675 825 1.153549 CGCCTGAGAGTTAGGTGCC 60.154 63.158 0.00 0.00 38.81 5.01
676 826 4.504132 CGCCTGAGAGTTAGGTGC 57.496 61.111 0.00 0.00 38.81 5.01
677 827 0.459237 CAGCGCCTGAGAGTTAGGTG 60.459 60.000 2.29 0.00 46.21 4.00
678 828 1.893786 CAGCGCCTGAGAGTTAGGT 59.106 57.895 2.29 0.00 37.64 3.08
679 829 1.520342 GCAGCGCCTGAGAGTTAGG 60.520 63.158 2.29 0.00 38.39 2.69
680 830 1.080995 GTGCAGCGCCTGAGAGTTAG 61.081 60.000 2.29 0.00 32.44 2.34
681 831 1.079819 GTGCAGCGCCTGAGAGTTA 60.080 57.895 2.29 0.00 32.44 2.24
682 832 2.358003 GTGCAGCGCCTGAGAGTT 60.358 61.111 2.29 0.00 32.44 3.01
683 833 4.731612 CGTGCAGCGCCTGAGAGT 62.732 66.667 2.29 0.00 32.44 3.24
694 844 3.730761 GCCCAAGTCAGCGTGCAG 61.731 66.667 0.00 0.00 0.00 4.41
695 845 4.560743 TGCCCAAGTCAGCGTGCA 62.561 61.111 0.00 0.00 0.00 4.57
696 846 4.030452 GTGCCCAAGTCAGCGTGC 62.030 66.667 0.00 0.00 0.00 5.34
697 847 0.673333 TATGTGCCCAAGTCAGCGTG 60.673 55.000 0.00 0.00 0.00 5.34
698 848 0.253044 ATATGTGCCCAAGTCAGCGT 59.747 50.000 0.00 0.00 0.00 5.07
699 849 0.659427 CATATGTGCCCAAGTCAGCG 59.341 55.000 0.00 0.00 0.00 5.18
700 850 1.027357 CCATATGTGCCCAAGTCAGC 58.973 55.000 1.24 0.00 0.00 4.26
701 851 1.064463 ACCCATATGTGCCCAAGTCAG 60.064 52.381 1.24 0.00 0.00 3.51
702 852 0.998928 ACCCATATGTGCCCAAGTCA 59.001 50.000 1.24 0.00 0.00 3.41
703 853 1.392589 CACCCATATGTGCCCAAGTC 58.607 55.000 1.24 0.00 0.00 3.01
704 854 3.594453 CACCCATATGTGCCCAAGT 57.406 52.632 1.24 0.00 0.00 3.16
711 861 1.521457 AGCGTCGCACCCATATGTG 60.521 57.895 21.09 0.00 39.29 3.21
712 862 1.521457 CAGCGTCGCACCCATATGT 60.521 57.895 21.09 0.00 0.00 2.29
713 863 2.246739 CCAGCGTCGCACCCATATG 61.247 63.158 21.09 6.70 0.00 1.78
714 864 2.108976 CCAGCGTCGCACCCATAT 59.891 61.111 21.09 0.00 0.00 1.78
715 865 4.830765 GCCAGCGTCGCACCCATA 62.831 66.667 21.09 0.00 0.00 2.74
732 882 0.384309 TTCAGATAGGCGCTACACGG 59.616 55.000 7.64 0.00 43.93 4.94
734 884 2.474816 CCTTTCAGATAGGCGCTACAC 58.525 52.381 7.64 0.00 0.00 2.90
735 885 2.890808 CCTTTCAGATAGGCGCTACA 57.109 50.000 7.64 0.00 0.00 2.74
742 892 1.398390 GTGCAACGCCTTTCAGATAGG 59.602 52.381 2.53 2.53 35.80 2.57
743 893 2.076100 TGTGCAACGCCTTTCAGATAG 58.924 47.619 0.00 0.00 42.39 2.08
744 894 2.076100 CTGTGCAACGCCTTTCAGATA 58.924 47.619 0.00 0.00 42.39 1.98
745 895 0.877071 CTGTGCAACGCCTTTCAGAT 59.123 50.000 0.00 0.00 42.39 2.90
746 896 0.463654 ACTGTGCAACGCCTTTCAGA 60.464 50.000 3.95 0.00 42.39 3.27
747 897 1.195448 CTACTGTGCAACGCCTTTCAG 59.805 52.381 0.00 0.00 42.39 3.02
748 898 1.225855 CTACTGTGCAACGCCTTTCA 58.774 50.000 0.00 0.00 42.39 2.69
749 899 0.517316 CCTACTGTGCAACGCCTTTC 59.483 55.000 0.00 0.00 42.39 2.62
750 900 0.889186 CCCTACTGTGCAACGCCTTT 60.889 55.000 0.00 0.00 42.39 3.11
751 901 1.302511 CCCTACTGTGCAACGCCTT 60.303 57.895 0.00 0.00 42.39 4.35
752 902 2.347490 CCCTACTGTGCAACGCCT 59.653 61.111 0.00 0.00 42.39 5.52
753 903 2.032071 ACCCTACTGTGCAACGCC 59.968 61.111 0.00 0.00 42.39 5.68
754 904 1.597027 ACACCCTACTGTGCAACGC 60.597 57.895 0.00 0.00 42.39 4.84
755 905 1.227999 CCACACCCTACTGTGCAACG 61.228 60.000 0.00 0.00 42.39 4.10
756 906 1.515521 GCCACACCCTACTGTGCAAC 61.516 60.000 0.00 0.00 40.33 4.17
757 907 1.228124 GCCACACCCTACTGTGCAA 60.228 57.895 0.00 0.00 40.33 4.08
758 908 2.429930 GCCACACCCTACTGTGCA 59.570 61.111 0.00 0.00 40.33 4.57
759 909 1.966451 GTGCCACACCCTACTGTGC 60.966 63.158 0.00 0.00 40.33 4.57
760 910 4.379174 GTGCCACACCCTACTGTG 57.621 61.111 0.00 0.00 41.19 3.66
784 934 3.322706 CTTTTGTGTAGCGCCCGCC 62.323 63.158 2.29 0.00 43.17 6.13
785 935 2.175811 CTTTTGTGTAGCGCCCGC 59.824 61.111 2.29 4.20 42.33 6.13
786 936 2.686816 CCCTTTTGTGTAGCGCCCG 61.687 63.158 2.29 0.00 0.00 6.13
787 937 1.583495 GACCCTTTTGTGTAGCGCCC 61.583 60.000 2.29 0.00 0.00 6.13
788 938 0.887387 TGACCCTTTTGTGTAGCGCC 60.887 55.000 2.29 0.00 0.00 6.53
789 939 0.517316 CTGACCCTTTTGTGTAGCGC 59.483 55.000 0.00 0.00 0.00 5.92
790 940 1.156736 CCTGACCCTTTTGTGTAGCG 58.843 55.000 0.00 0.00 0.00 4.26
791 941 1.073284 TCCCTGACCCTTTTGTGTAGC 59.927 52.381 0.00 0.00 0.00 3.58
792 942 3.181443 ACTTCCCTGACCCTTTTGTGTAG 60.181 47.826 0.00 0.00 0.00 2.74
793 943 2.781174 ACTTCCCTGACCCTTTTGTGTA 59.219 45.455 0.00 0.00 0.00 2.90
794 944 1.569072 ACTTCCCTGACCCTTTTGTGT 59.431 47.619 0.00 0.00 0.00 3.72
795 945 1.956477 CACTTCCCTGACCCTTTTGTG 59.044 52.381 0.00 0.00 0.00 3.33
796 946 1.850345 TCACTTCCCTGACCCTTTTGT 59.150 47.619 0.00 0.00 0.00 2.83
797 947 2.656947 TCACTTCCCTGACCCTTTTG 57.343 50.000 0.00 0.00 0.00 2.44
798 948 3.680777 TTTCACTTCCCTGACCCTTTT 57.319 42.857 0.00 0.00 0.00 2.27
799 949 3.903530 ATTTCACTTCCCTGACCCTTT 57.096 42.857 0.00 0.00 0.00 3.11
800 950 3.916989 ACTATTTCACTTCCCTGACCCTT 59.083 43.478 0.00 0.00 0.00 3.95
801 951 3.532102 ACTATTTCACTTCCCTGACCCT 58.468 45.455 0.00 0.00 0.00 4.34
802 952 4.302559 AACTATTTCACTTCCCTGACCC 57.697 45.455 0.00 0.00 0.00 4.46
803 953 4.392138 CGAAACTATTTCACTTCCCTGACC 59.608 45.833 2.50 0.00 39.63 4.02
804 954 4.142881 GCGAAACTATTTCACTTCCCTGAC 60.143 45.833 2.50 0.00 39.63 3.51
805 955 4.000988 GCGAAACTATTTCACTTCCCTGA 58.999 43.478 2.50 0.00 39.63 3.86
806 956 3.751175 TGCGAAACTATTTCACTTCCCTG 59.249 43.478 2.50 0.00 39.63 4.45
807 957 4.015872 TGCGAAACTATTTCACTTCCCT 57.984 40.909 2.50 0.00 39.63 4.20
808 958 4.473199 GTTGCGAAACTATTTCACTTCCC 58.527 43.478 0.00 0.00 39.63 3.97
809 959 4.023536 TGGTTGCGAAACTATTTCACTTCC 60.024 41.667 6.17 1.11 39.63 3.46
810 960 5.103290 TGGTTGCGAAACTATTTCACTTC 57.897 39.130 6.17 0.00 39.63 3.01
811 961 4.578928 ACTGGTTGCGAAACTATTTCACTT 59.421 37.500 6.17 0.00 39.63 3.16
812 962 4.134563 ACTGGTTGCGAAACTATTTCACT 58.865 39.130 6.17 0.00 39.63 3.41
813 963 4.483476 ACTGGTTGCGAAACTATTTCAC 57.517 40.909 6.17 0.00 39.63 3.18
814 964 4.576873 TGAACTGGTTGCGAAACTATTTCA 59.423 37.500 17.86 17.86 39.63 2.69
815 965 5.103290 TGAACTGGTTGCGAAACTATTTC 57.897 39.130 13.74 13.74 36.32 2.17
816 966 5.705609 ATGAACTGGTTGCGAAACTATTT 57.294 34.783 6.17 0.00 0.00 1.40
817 967 5.473504 AGAATGAACTGGTTGCGAAACTATT 59.526 36.000 6.17 0.00 0.00 1.73
818 968 5.003804 AGAATGAACTGGTTGCGAAACTAT 58.996 37.500 6.17 0.00 0.00 2.12
819 969 4.213270 CAGAATGAACTGGTTGCGAAACTA 59.787 41.667 6.17 0.00 39.69 2.24
820 970 3.003689 CAGAATGAACTGGTTGCGAAACT 59.996 43.478 6.17 0.00 39.69 2.66
821 971 3.243068 ACAGAATGAACTGGTTGCGAAAC 60.243 43.478 0.00 0.00 39.69 2.78
822 972 2.948979 ACAGAATGAACTGGTTGCGAAA 59.051 40.909 0.00 0.00 39.69 3.46
823 973 2.290367 CACAGAATGAACTGGTTGCGAA 59.710 45.455 0.00 0.00 39.69 4.70
824 974 1.872952 CACAGAATGAACTGGTTGCGA 59.127 47.619 0.00 0.00 39.69 5.10
825 975 1.872952 TCACAGAATGAACTGGTTGCG 59.127 47.619 0.00 0.00 39.69 4.85
826 976 4.510038 AATCACAGAATGAACTGGTTGC 57.490 40.909 0.00 0.00 41.93 4.17
827 977 6.075762 TCAAATCACAGAATGAACTGGTTG 57.924 37.500 0.00 0.00 41.93 3.77
828 978 6.906157 ATCAAATCACAGAATGAACTGGTT 57.094 33.333 0.00 0.00 41.93 3.67
829 979 6.906157 AATCAAATCACAGAATGAACTGGT 57.094 33.333 0.00 0.00 41.93 4.00
830 980 6.525628 CGAAATCAAATCACAGAATGAACTGG 59.474 38.462 0.00 0.00 41.93 4.00
831 981 7.300320 TCGAAATCAAATCACAGAATGAACTG 58.700 34.615 0.00 0.00 41.93 3.16
832 982 7.439157 TCGAAATCAAATCACAGAATGAACT 57.561 32.000 0.00 0.00 41.93 3.01
833 983 8.679288 AATCGAAATCAAATCACAGAATGAAC 57.321 30.769 0.00 0.00 41.93 3.18
838 988 9.613428 ACCTATAATCGAAATCAAATCACAGAA 57.387 29.630 0.00 0.00 0.00 3.02
839 989 9.261180 GACCTATAATCGAAATCAAATCACAGA 57.739 33.333 0.00 0.00 0.00 3.41
840 990 9.045223 TGACCTATAATCGAAATCAAATCACAG 57.955 33.333 0.00 0.00 0.00 3.66
841 991 8.956533 TGACCTATAATCGAAATCAAATCACA 57.043 30.769 0.00 0.00 0.00 3.58
857 1007 9.213799 GGCAAATTTGACAATTTTGACCTATAA 57.786 29.630 27.56 0.00 40.09 0.98
858 1008 8.370940 TGGCAAATTTGACAATTTTGACCTATA 58.629 29.630 24.47 13.56 44.72 1.31
859 1009 7.222872 TGGCAAATTTGACAATTTTGACCTAT 58.777 30.769 24.47 0.00 44.72 2.57
860 1010 6.586344 TGGCAAATTTGACAATTTTGACCTA 58.414 32.000 24.47 14.34 44.72 3.08
861 1011 5.435291 TGGCAAATTTGACAATTTTGACCT 58.565 33.333 24.47 0.28 44.72 3.85
862 1012 5.747951 TGGCAAATTTGACAATTTTGACC 57.252 34.783 24.47 25.24 44.72 4.02
871 1021 2.622942 GAGTGAGGTGGCAAATTTGACA 59.377 45.455 22.97 22.97 45.70 3.58
872 1022 2.029918 GGAGTGAGGTGGCAAATTTGAC 60.030 50.000 22.31 19.99 36.50 3.18
873 1023 2.238521 GGAGTGAGGTGGCAAATTTGA 58.761 47.619 22.31 0.00 0.00 2.69
874 1024 1.962807 TGGAGTGAGGTGGCAAATTTG 59.037 47.619 14.03 14.03 0.00 2.32
875 1025 1.963515 GTGGAGTGAGGTGGCAAATTT 59.036 47.619 0.00 0.00 0.00 1.82
876 1026 1.620822 GTGGAGTGAGGTGGCAAATT 58.379 50.000 0.00 0.00 0.00 1.82
877 1027 0.251341 GGTGGAGTGAGGTGGCAAAT 60.251 55.000 0.00 0.00 0.00 2.32
878 1028 1.150536 GGTGGAGTGAGGTGGCAAA 59.849 57.895 0.00 0.00 0.00 3.68
879 1029 2.075566 TGGTGGAGTGAGGTGGCAA 61.076 57.895 0.00 0.00 0.00 4.52
880 1030 2.447572 TGGTGGAGTGAGGTGGCA 60.448 61.111 0.00 0.00 0.00 4.92
881 1031 2.032681 GTGGTGGAGTGAGGTGGC 59.967 66.667 0.00 0.00 0.00 5.01
882 1032 2.146724 TGGTGGTGGAGTGAGGTGG 61.147 63.158 0.00 0.00 0.00 4.61
883 1033 1.071471 GTGGTGGTGGAGTGAGGTG 59.929 63.158 0.00 0.00 0.00 4.00
884 1034 1.383943 TGTGGTGGTGGAGTGAGGT 60.384 57.895 0.00 0.00 0.00 3.85
885 1035 1.071471 GTGTGGTGGTGGAGTGAGG 59.929 63.158 0.00 0.00 0.00 3.86
886 1036 0.034059 GAGTGTGGTGGTGGAGTGAG 59.966 60.000 0.00 0.00 0.00 3.51
887 1037 1.407656 GGAGTGTGGTGGTGGAGTGA 61.408 60.000 0.00 0.00 0.00 3.41
888 1038 1.071471 GGAGTGTGGTGGTGGAGTG 59.929 63.158 0.00 0.00 0.00 3.51
889 1039 1.383943 TGGAGTGTGGTGGTGGAGT 60.384 57.895 0.00 0.00 0.00 3.85
890 1040 1.071471 GTGGAGTGTGGTGGTGGAG 59.929 63.158 0.00 0.00 0.00 3.86
891 1041 1.690985 TGTGGAGTGTGGTGGTGGA 60.691 57.895 0.00 0.00 0.00 4.02
892 1042 1.227943 CTGTGGAGTGTGGTGGTGG 60.228 63.158 0.00 0.00 0.00 4.61
979 1130 2.357517 GATGAGGTATGGGCGCCG 60.358 66.667 22.54 0.00 0.00 6.46
980 1131 1.004440 GAGATGAGGTATGGGCGCC 60.004 63.158 21.18 21.18 0.00 6.53
981 1132 1.004440 GGAGATGAGGTATGGGCGC 60.004 63.158 0.00 0.00 0.00 6.53
988 1139 1.121407 CCCGCCATGGAGATGAGGTA 61.121 60.000 18.40 0.00 42.00 3.08
1125 1280 2.125773 AGGAGTCGTACGAGTTCCAT 57.874 50.000 33.32 22.38 33.79 3.41
1256 1414 7.073342 CATCCATTCTATGCATGTGTCTATG 57.927 40.000 10.16 4.55 0.00 2.23
1268 1426 6.753107 TGCATTATGAGCATCCATTCTATG 57.247 37.500 0.00 0.00 37.02 2.23
1281 1439 4.610007 CGAAGCGGAGAAATGCATTATGAG 60.610 45.833 13.39 5.04 0.00 2.90
1287 1454 1.009829 GTCGAAGCGGAGAAATGCAT 58.990 50.000 0.00 0.00 0.00 3.96
1571 1779 3.451141 AGAATCAAGATGGAGACGAGC 57.549 47.619 0.00 0.00 0.00 5.03
1720 1944 8.153550 ACCAAAATACTGCAAAATGATACCAAA 58.846 29.630 0.00 0.00 0.00 3.28
1721 1945 7.675062 ACCAAAATACTGCAAAATGATACCAA 58.325 30.769 0.00 0.00 0.00 3.67
1723 1947 8.247562 TGTACCAAAATACTGCAAAATGATACC 58.752 33.333 0.00 0.00 0.00 2.73
1724 1948 9.632807 TTGTACCAAAATACTGCAAAATGATAC 57.367 29.630 0.00 0.00 0.00 2.24
1786 2011 5.854866 GTCCTTTGCGTCTTTTTATACCAAC 59.145 40.000 0.00 0.00 0.00 3.77
1794 2019 3.253432 GGATCTGTCCTTTGCGTCTTTTT 59.747 43.478 0.00 0.00 41.60 1.94
1795 2020 2.814336 GGATCTGTCCTTTGCGTCTTTT 59.186 45.455 0.00 0.00 41.60 2.27
1797 2022 1.347707 TGGATCTGTCCTTTGCGTCTT 59.652 47.619 0.00 0.00 45.32 3.01
1798 2023 0.976641 TGGATCTGTCCTTTGCGTCT 59.023 50.000 0.00 0.00 45.32 4.18
1799 2024 1.464997 GTTGGATCTGTCCTTTGCGTC 59.535 52.381 0.00 0.00 45.32 5.19
1801 2026 1.522668 TGTTGGATCTGTCCTTTGCG 58.477 50.000 0.00 0.00 45.32 4.85
1802 2027 4.219288 AGATTTGTTGGATCTGTCCTTTGC 59.781 41.667 0.00 0.00 45.32 3.68
1806 2150 4.841422 CTGAGATTTGTTGGATCTGTCCT 58.159 43.478 0.00 0.00 45.32 3.85
1809 2153 3.245016 TGGCTGAGATTTGTTGGATCTGT 60.245 43.478 0.00 0.00 34.13 3.41
1810 2154 3.349927 TGGCTGAGATTTGTTGGATCTG 58.650 45.455 0.00 0.00 34.13 2.90
1819 2163 5.051816 ACATTGTTTGTTGGCTGAGATTTG 58.948 37.500 0.00 0.00 33.74 2.32
1827 2171 3.387374 TGGATTGACATTGTTTGTTGGCT 59.613 39.130 0.00 0.00 39.18 4.75
1837 2181 7.436080 GCATTATAGGTTGTTGGATTGACATTG 59.564 37.037 0.00 0.00 0.00 2.82
1840 2184 6.186957 AGCATTATAGGTTGTTGGATTGACA 58.813 36.000 0.00 0.00 0.00 3.58
1841 2185 6.699575 AGCATTATAGGTTGTTGGATTGAC 57.300 37.500 0.00 0.00 0.00 3.18
1842 2186 6.889177 TGAAGCATTATAGGTTGTTGGATTGA 59.111 34.615 0.00 0.00 0.00 2.57
1852 2197 5.237344 GCTCGTCATTGAAGCATTATAGGTT 59.763 40.000 5.63 0.00 0.00 3.50
1860 2205 0.742281 AGCGCTCGTCATTGAAGCAT 60.742 50.000 2.64 0.00 0.00 3.79
1877 2222 1.069296 TGCACGCTAAACATGTTGAGC 60.069 47.619 30.88 30.88 42.40 4.26
1882 2227 7.309177 TGTTATTAATTGCACGCTAAACATGT 58.691 30.769 0.00 0.00 0.00 3.21
1944 2289 9.865321 GTGCGTTAATATTAGGTAGGATATCAA 57.135 33.333 4.83 0.00 0.00 2.57
1945 2290 9.027202 TGTGCGTTAATATTAGGTAGGATATCA 57.973 33.333 4.83 0.00 0.00 2.15
1946 2291 9.865321 TTGTGCGTTAATATTAGGTAGGATATC 57.135 33.333 0.00 0.00 0.00 1.63
1949 2294 8.999431 CAATTGTGCGTTAATATTAGGTAGGAT 58.001 33.333 0.00 0.00 0.00 3.24
1950 2295 8.205512 TCAATTGTGCGTTAATATTAGGTAGGA 58.794 33.333 5.13 0.00 0.00 2.94
1951 2296 8.373048 TCAATTGTGCGTTAATATTAGGTAGG 57.627 34.615 5.13 0.00 0.00 3.18
1989 2334 5.627367 GCACAAAATTAGTTGCACGTTGATA 59.373 36.000 0.00 0.00 31.29 2.15
1995 2340 2.725723 CAGGCACAAAATTAGTTGCACG 59.274 45.455 7.23 0.00 31.29 5.34
2086 2431 1.556911 GTGGATGTGTGGGTGAGATCT 59.443 52.381 0.00 0.00 0.00 2.75
2099 2444 2.552315 GTTGTTGGATTGACGTGGATGT 59.448 45.455 0.00 0.00 0.00 3.06
2250 2755 9.701098 TGGACATAATTGGATAGTAATAACGAC 57.299 33.333 0.00 0.00 0.00 4.34
2438 3239 8.440771 TCTCTTTCTTTTACAGATCCCTTTCTT 58.559 33.333 0.00 0.00 0.00 2.52
2441 3242 8.610369 AGATCTCTTTCTTTTACAGATCCCTTT 58.390 33.333 0.00 0.00 40.21 3.11
2443 3244 7.747809 AGATCTCTTTCTTTTACAGATCCCT 57.252 36.000 0.00 0.00 40.21 4.20
2444 3245 9.541143 CTAAGATCTCTTTCTTTTACAGATCCC 57.459 37.037 0.00 0.00 40.21 3.85
2445 3246 9.040939 GCTAAGATCTCTTTCTTTTACAGATCC 57.959 37.037 0.00 0.00 40.21 3.36
2447 3248 7.223777 GCGCTAAGATCTCTTTCTTTTACAGAT 59.776 37.037 0.00 0.00 37.20 2.90
2451 3381 5.288952 ACGCGCTAAGATCTCTTTCTTTTAC 59.711 40.000 5.73 0.00 37.20 2.01
2861 3832 6.558775 AGAATGGAGGGCTACATTAGTTCATA 59.441 38.462 0.00 0.00 43.77 2.15
2862 3833 5.370880 AGAATGGAGGGCTACATTAGTTCAT 59.629 40.000 0.00 0.00 43.77 2.57
3184 5450 6.503524 AGTAAATTGGTTGTACTGCAAACTG 58.496 36.000 0.00 0.00 44.80 3.16
3246 5526 3.615614 GATCTTATTCGCAGCAGCAAAG 58.384 45.455 0.82 0.00 42.27 2.77
3276 5556 1.985116 GGACCTTCCTCGCAGTCCT 60.985 63.158 0.80 0.00 44.46 3.85
3280 5560 2.581354 CCAGGACCTTCCTCGCAG 59.419 66.667 0.00 0.00 45.66 5.18
3360 5644 8.907222 TTACTAAAAAGGAAAGTACCACGAAT 57.093 30.769 0.00 0.00 0.00 3.34
3373 5657 4.624024 CGAGTCGTGCATTACTAAAAAGGA 59.376 41.667 3.82 0.00 0.00 3.36
3374 5658 4.201685 CCGAGTCGTGCATTACTAAAAAGG 60.202 45.833 12.31 1.24 0.00 3.11
3381 5667 1.544691 AGAACCGAGTCGTGCATTACT 59.455 47.619 12.31 3.76 0.00 2.24
3419 5710 5.824243 AGTTTTCGAACGATTAGTCACAG 57.176 39.130 0.00 0.00 0.00 3.66
3562 5859 3.028130 GGTTTCAGACTTTGGGTTCCAA 58.972 45.455 0.00 0.00 42.29 3.53
3563 5860 2.243736 AGGTTTCAGACTTTGGGTTCCA 59.756 45.455 0.00 0.00 0.00 3.53
3607 5913 5.402398 GTGATTTAGCCATTGACCAAAGTC 58.598 41.667 0.00 0.00 43.83 3.01
3721 7030 2.229792 TCACCTCCATGTTGTTTCTGC 58.770 47.619 0.00 0.00 0.00 4.26
3792 7104 4.598257 CCCACAGGTTAGCTCGTG 57.402 61.111 0.00 6.90 0.00 4.35
4201 7515 3.432186 CCATCATCGGTGTCAATACCTGT 60.432 47.826 0.00 0.00 38.62 4.00
4347 7661 2.742053 CTCTACATGTGGTTCCCGTTTG 59.258 50.000 9.11 0.00 0.00 2.93
4356 7670 1.552337 CAGCCTCACTCTACATGTGGT 59.448 52.381 9.11 1.78 36.21 4.16
4358 7672 1.066645 TGCAGCCTCACTCTACATGTG 60.067 52.381 9.11 0.00 36.82 3.21
4359 7673 1.269958 TGCAGCCTCACTCTACATGT 58.730 50.000 2.69 2.69 0.00 3.21
4577 8416 4.906060 AGTAACTTGTACCTCCTTCCTTGT 59.094 41.667 0.00 0.00 0.00 3.16
4762 8602 4.403752 AGCCAAAGAAAAGGGATGCTTATC 59.596 41.667 0.00 0.00 0.00 1.75
5021 8871 8.593679 TGAACAGGTGAACATTATTAGAGAGAA 58.406 33.333 0.00 0.00 0.00 2.87
5169 9024 7.500892 TCTTTCATTAGTCTACTTTGCCAACAA 59.499 33.333 0.00 0.00 0.00 2.83
5227 12533 4.661222 TCATGGGTAGATTTTCAACTGCA 58.339 39.130 0.00 0.00 0.00 4.41
5229 12535 5.887598 TCCATCATGGGTAGATTTTCAACTG 59.112 40.000 3.05 0.00 38.32 3.16
5328 12635 5.883661 ACTCATCAAATATTGCTTTGACCG 58.116 37.500 1.37 0.00 45.21 4.79
5487 12794 6.562270 CGTGTTTCTTTCTGTTGTAGCAGTAG 60.562 42.308 0.00 0.00 37.70 2.57
5732 13095 1.682257 GAGCAGGCCTCTGAAACCT 59.318 57.895 0.00 0.00 43.49 3.50
5919 13302 0.907704 ACAGGTAGGGCCACGATCAA 60.908 55.000 6.18 0.00 40.61 2.57
5971 13372 0.460811 CAAGCTCACTCCTATGCGCA 60.461 55.000 14.96 14.96 32.60 6.09
5989 13390 4.161295 CGGGATTGAGCCGAGCCA 62.161 66.667 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.