Multiple sequence alignment - TraesCS6D01G046700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G046700 chr6D 100.000 4092 0 0 1 4092 20854694 20850603 0.000000e+00 7557.0
1 TraesCS6D01G046700 chr6D 90.299 134 11 2 3619 3752 20850983 20850852 1.510000e-39 174.0
2 TraesCS6D01G046700 chr6D 90.299 134 11 2 3712 3843 20851076 20850943 1.510000e-39 174.0
3 TraesCS6D01G046700 chr6A 92.402 2290 114 25 893 3148 21142800 21140537 0.000000e+00 3210.0
4 TraesCS6D01G046700 chr6A 89.339 741 46 17 1 719 21143524 21142795 0.000000e+00 900.0
5 TraesCS6D01G046700 chr6A 83.262 233 16 8 3156 3384 21140499 21140286 4.170000e-45 193.0
6 TraesCS6D01G046700 chr6A 93.878 49 0 2 3383 3428 21139962 21139914 2.040000e-08 71.3
7 TraesCS6D01G046700 chr6B 90.191 2141 124 33 1 2105 35824762 35822672 0.000000e+00 2712.0
8 TraesCS6D01G046700 chr6B 92.802 1042 46 12 2107 3143 35822379 35821362 0.000000e+00 1482.0
9 TraesCS6D01G046700 chr6B 85.663 279 13 7 3156 3428 35821305 35821048 6.740000e-68 268.0
10 TraesCS6D01G046700 chr6B 87.317 205 24 2 3521 3724 35820800 35820597 2.460000e-57 233.0
11 TraesCS6D01G046700 chr6B 91.241 137 12 0 792 928 272621108 272620972 1.940000e-43 187.0
12 TraesCS6D01G046700 chr2D 78.740 381 59 13 3712 4080 18195161 18195531 6.840000e-58 235.0
13 TraesCS6D01G046700 chr7A 94.040 151 9 0 778 928 668745986 668745836 3.180000e-56 230.0
14 TraesCS6D01G046700 chr7A 95.745 94 4 0 835 928 32211412 32211319 7.080000e-33 152.0
15 TraesCS6D01G046700 chr4A 94.040 151 9 0 778 928 638474527 638474677 3.180000e-56 230.0
16 TraesCS6D01G046700 chr5A 97.872 94 2 0 835 928 135147819 135147726 3.270000e-36 163.0
17 TraesCS6D01G046700 chrUn 76.667 180 32 5 3712 3882 42497088 42496910 1.570000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G046700 chr6D 20850603 20854694 4091 True 2635.000 7557 93.532667 1 4092 3 chr6D.!!$R1 4091
1 TraesCS6D01G046700 chr6A 21139914 21143524 3610 True 1093.575 3210 89.720250 1 3428 4 chr6A.!!$R1 3427
2 TraesCS6D01G046700 chr6B 35820597 35824762 4165 True 1173.750 2712 88.993250 1 3724 4 chr6B.!!$R2 3723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 573 0.178932 TGTAGTCAGAGCCCCAGTGT 60.179 55.0 0.00 0.0 0.00 3.55 F
591 628 0.240945 GCTGCTGCCGCTTTCTTTTA 59.759 50.0 8.89 0.0 36.97 1.52 F
1493 1539 0.889186 GGTTTGTCGTGCCAGGACAT 60.889 55.0 19.72 0.0 41.81 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1493 1539 0.036164 CGGTCAGTGGAATGAACCCA 59.964 55.0 0.00 0.0 33.06 4.51 R
2369 2722 0.251354 ATGTCCAGCTCAGCGACAAT 59.749 50.0 10.93 0.0 0.00 2.71 R
3239 3667 1.350071 AATGCCCCAAATGAACAGCA 58.650 45.0 0.00 0.0 34.28 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.082523 GGCGTGCAGGCTACTCCA 62.083 66.667 28.51 0.00 42.90 3.86
210 227 1.227556 CCGCCGGTGGGAAGATTAG 60.228 63.158 27.22 0.00 34.06 1.73
407 435 3.557577 TTTCAAGCATGATGTTCCACG 57.442 42.857 0.00 0.00 34.96 4.94
474 507 2.185494 GTAGGGATGCTGCTGCTGC 61.185 63.158 22.51 22.51 40.48 5.25
475 508 2.372890 TAGGGATGCTGCTGCTGCT 61.373 57.895 27.67 15.76 40.48 4.24
476 509 2.604299 TAGGGATGCTGCTGCTGCTG 62.604 60.000 27.67 16.73 40.48 4.41
522 555 5.563592 TCTGTTGATTGATGAACTGGATGT 58.436 37.500 1.75 0.00 0.00 3.06
528 561 6.343703 TGATTGATGAACTGGATGTAGTCAG 58.656 40.000 0.00 0.00 37.07 3.51
536 570 0.755686 GGATGTAGTCAGAGCCCCAG 59.244 60.000 0.00 0.00 0.00 4.45
539 573 0.178932 TGTAGTCAGAGCCCCAGTGT 60.179 55.000 0.00 0.00 0.00 3.55
540 574 0.977395 GTAGTCAGAGCCCCAGTGTT 59.023 55.000 0.00 0.00 0.00 3.32
541 575 1.066787 GTAGTCAGAGCCCCAGTGTTC 60.067 57.143 0.00 0.00 0.00 3.18
542 576 1.003233 GTCAGAGCCCCAGTGTTCC 60.003 63.158 0.00 0.00 0.00 3.62
561 596 7.488150 AGTGTTCCTTTCTTTTGTCGATTTTTC 59.512 33.333 0.00 0.00 0.00 2.29
580 617 0.881159 CTAGAGATGCTGCTGCTGCC 60.881 60.000 25.44 13.14 40.48 4.85
586 623 4.773117 GCTGCTGCTGCCGCTTTC 62.773 66.667 21.66 2.86 44.32 2.62
587 624 3.054503 CTGCTGCTGCCGCTTTCT 61.055 61.111 16.81 0.00 38.71 2.52
588 625 2.595463 TGCTGCTGCCGCTTTCTT 60.595 55.556 16.81 0.00 38.71 2.52
591 628 0.240945 GCTGCTGCCGCTTTCTTTTA 59.759 50.000 8.89 0.00 36.97 1.52
592 629 1.135286 GCTGCTGCCGCTTTCTTTTAT 60.135 47.619 8.89 0.00 36.97 1.40
593 630 2.523015 CTGCTGCCGCTTTCTTTTATG 58.477 47.619 0.70 0.00 36.97 1.90
684 721 3.309556 CCCACATATTTACAGGGGTGGTT 60.310 47.826 0.00 0.00 43.21 3.67
727 764 2.409870 GCCTTGTATGCTGGCGCTT 61.410 57.895 7.64 0.00 37.11 4.68
762 799 8.361139 AGAGTAGTTGACATATATGCAGTTACC 58.639 37.037 12.79 10.49 0.00 2.85
771 808 9.273016 GACATATATGCAGTTACCACATTTACT 57.727 33.333 12.79 0.00 0.00 2.24
784 821 5.643777 ACCACATTTACTCATTAGTGCAGTC 59.356 40.000 0.00 0.00 36.36 3.51
815 852 4.877282 TGGCTGGTACTTTTTGCATAAAC 58.123 39.130 0.00 0.00 0.00 2.01
828 865 4.617253 TGCATAAACCAGTAGTCTGTGT 57.383 40.909 0.00 0.00 39.82 3.72
855 892 3.292492 TCCATGCAAGCTCATTGAGAT 57.708 42.857 17.87 8.39 41.83 2.75
861 898 2.032204 GCAAGCTCATTGAGATAAGCCG 60.032 50.000 17.87 0.19 41.83 5.52
890 929 5.030936 GGCGCTGATTTTCTTTATCTTCAC 58.969 41.667 7.64 0.00 0.00 3.18
953 992 3.536917 TGGCCCTCTATCACGGCG 61.537 66.667 4.80 4.80 43.99 6.46
988 1028 6.716628 ACTCTCCATGTTTTAAAATGAGCAGA 59.283 34.615 3.52 3.41 0.00 4.26
990 1030 6.716628 TCTCCATGTTTTAAAATGAGCAGAGT 59.283 34.615 3.52 0.00 0.00 3.24
1024 1064 1.904990 AAGGAGGAAGAAGAGCCGGC 61.905 60.000 21.89 21.89 0.00 6.13
1120 1164 4.177165 TCACATTGCCAACATCATGTTC 57.823 40.909 0.00 0.00 38.77 3.18
1128 1172 3.813800 CCAACATCATGTTCTTCACGTG 58.186 45.455 9.94 9.94 38.77 4.49
1130 1174 3.126001 ACATCATGTTCTTCACGTGGT 57.874 42.857 17.00 0.00 42.13 4.16
1131 1175 3.067106 ACATCATGTTCTTCACGTGGTC 58.933 45.455 17.00 2.85 42.13 4.02
1132 1176 2.900716 TCATGTTCTTCACGTGGTCA 57.099 45.000 17.00 8.40 42.13 4.02
1133 1177 3.186702 TCATGTTCTTCACGTGGTCAA 57.813 42.857 17.00 1.44 42.13 3.18
1134 1178 3.536570 TCATGTTCTTCACGTGGTCAAA 58.463 40.909 17.00 1.04 42.13 2.69
1135 1179 4.133820 TCATGTTCTTCACGTGGTCAAAT 58.866 39.130 17.00 0.28 42.13 2.32
1136 1180 5.301555 TCATGTTCTTCACGTGGTCAAATA 58.698 37.500 17.00 4.45 42.13 1.40
1137 1181 5.937540 TCATGTTCTTCACGTGGTCAAATAT 59.062 36.000 17.00 6.52 42.13 1.28
1138 1182 5.856126 TGTTCTTCACGTGGTCAAATATC 57.144 39.130 17.00 0.00 0.00 1.63
1139 1183 4.693566 TGTTCTTCACGTGGTCAAATATCC 59.306 41.667 17.00 0.00 0.00 2.59
1140 1184 4.545208 TCTTCACGTGGTCAAATATCCA 57.455 40.909 17.00 0.00 0.00 3.41
1209 1253 6.740122 GCACACATAACCCTTTTTACCACATT 60.740 38.462 0.00 0.00 0.00 2.71
1261 1305 7.201644 CCAGTAGTACTTGCCAAAATCATACTG 60.202 40.741 0.00 3.68 37.31 2.74
1340 1386 3.623060 CACACGCCATTTGTAAGCTCTAT 59.377 43.478 0.00 0.00 0.00 1.98
1362 1408 2.744202 GAGCACATCAACGAAGGTCAAT 59.256 45.455 0.00 0.00 0.00 2.57
1391 1437 1.997311 CAGAGCCATGGGGACTGGA 60.997 63.158 15.13 0.00 36.86 3.86
1395 1441 3.009115 CCATGGGGACTGGACCGT 61.009 66.667 2.85 0.00 35.70 4.83
1434 1480 2.091588 GCATACTTACACAACACCGTCG 59.908 50.000 0.00 0.00 0.00 5.12
1492 1538 1.525077 GGTTTGTCGTGCCAGGACA 60.525 57.895 15.70 15.70 40.72 4.02
1493 1539 0.889186 GGTTTGTCGTGCCAGGACAT 60.889 55.000 19.72 0.00 41.81 3.06
1583 1629 5.509840 GGTCAAGTATGAAGCCGACTATGAT 60.510 44.000 0.00 0.00 37.30 2.45
1672 1718 5.354054 GCTACTGCAATCATCAACCATAG 57.646 43.478 0.00 0.00 39.41 2.23
1700 1746 6.766944 AGGCTGATGATAGATTCAAGAAGTTG 59.233 38.462 0.00 0.00 38.03 3.16
1714 1760 6.966021 TCAAGAAGTTGTGGCTTATTTACAC 58.034 36.000 0.00 0.00 34.98 2.90
1724 1770 5.701290 GTGGCTTATTTACACTGTCTCAACT 59.299 40.000 0.00 0.00 32.58 3.16
1725 1771 5.932303 TGGCTTATTTACACTGTCTCAACTC 59.068 40.000 0.00 0.00 0.00 3.01
1793 1839 2.543777 TGCTGGTAACACACTCTTCC 57.456 50.000 0.00 0.00 46.17 3.46
1857 1905 3.313526 TCTCTTGCTTGCTTTGACACTTC 59.686 43.478 0.00 0.00 0.00 3.01
1862 1920 4.819769 TGCTTGCTTTGACACTTCTTTTT 58.180 34.783 0.00 0.00 0.00 1.94
1877 1935 8.773645 ACACTTCTTTTTCCTTTTTGTTTTGAG 58.226 29.630 0.00 0.00 0.00 3.02
1955 2013 0.976641 TCCACGAGCACCTCTCAAAT 59.023 50.000 0.00 0.00 41.98 2.32
2033 2091 8.026026 TCCAAAATTTTCTTGGTTTTTCAAAGC 58.974 29.630 0.00 0.00 43.33 3.51
2043 2101 6.900568 TGGTTTTTCAAAGCAAACATACAG 57.099 33.333 0.00 0.00 35.01 2.74
2181 2531 1.064166 CCTCCATCTTGCCCAATCTGT 60.064 52.381 0.00 0.00 0.00 3.41
2200 2550 6.909550 TCTGTGTTTATTAGCCATTTTGGT 57.090 33.333 0.00 0.00 40.46 3.67
2242 2594 7.689446 TGTCCCACTCTCTTATTATATCTCG 57.311 40.000 0.00 0.00 0.00 4.04
2324 2677 3.263170 TGGCATGGAGCTTGAGTTAACTA 59.737 43.478 8.42 0.00 44.79 2.24
2369 2722 1.913419 GGTCCAAGACCCAGGTTGATA 59.087 52.381 2.14 0.00 46.19 2.15
2420 2773 1.799933 TCCACCCTGTTTTGGCAAAT 58.200 45.000 14.29 0.00 32.37 2.32
2438 2791 5.115480 GCAAATTTCAGGTTCTTTTCACCA 58.885 37.500 0.00 0.00 36.67 4.17
2611 2972 1.112315 AGGAGGCTGCTAGTGGATCG 61.112 60.000 6.79 0.00 0.00 3.69
2758 3122 3.812053 GGATGAGTTGATGTGCCATCTAC 59.188 47.826 16.19 16.19 35.31 2.59
2846 3211 5.590530 TTTTCTGCAGGACAAGCTTAAAA 57.409 34.783 15.13 6.96 0.00 1.52
3074 3439 1.300233 GCGTCGTCATCAGGATCCC 60.300 63.158 8.55 0.00 0.00 3.85
3083 3448 3.898123 GTCATCAGGATCCCTAGTGCTAA 59.102 47.826 8.55 0.00 29.64 3.09
3094 3459 5.488341 TCCCTAGTGCTAACAGAATGAAAC 58.512 41.667 0.00 0.00 39.69 2.78
3199 3612 6.491403 ACAATACTGGAGCATTTTCAGACTTT 59.509 34.615 0.00 0.00 33.19 2.66
3215 3628 6.353323 TCAGACTTTGTTTATCAACACAGGA 58.647 36.000 9.97 0.00 42.71 3.86
3216 3629 6.998074 TCAGACTTTGTTTATCAACACAGGAT 59.002 34.615 9.97 0.00 42.71 3.24
3217 3630 7.502226 TCAGACTTTGTTTATCAACACAGGATT 59.498 33.333 9.97 0.00 42.71 3.01
3218 3631 8.783093 CAGACTTTGTTTATCAACACAGGATTA 58.217 33.333 9.97 0.00 42.71 1.75
3219 3632 8.784043 AGACTTTGTTTATCAACACAGGATTAC 58.216 33.333 9.97 0.00 42.71 1.89
3220 3633 8.458573 ACTTTGTTTATCAACACAGGATTACA 57.541 30.769 9.97 0.00 42.71 2.41
3221 3634 8.908903 ACTTTGTTTATCAACACAGGATTACAA 58.091 29.630 9.97 0.00 42.71 2.41
3222 3635 9.912634 CTTTGTTTATCAACACAGGATTACAAT 57.087 29.630 0.00 0.00 42.87 2.71
3228 3641 9.607988 TTATCAACACAGGATTACAATAATCGT 57.392 29.630 3.19 1.26 0.00 3.73
3229 3642 7.534085 TCAACACAGGATTACAATAATCGTC 57.466 36.000 1.74 0.00 0.00 4.20
3234 3662 9.607988 ACACAGGATTACAATAATCGTCATTTA 57.392 29.630 1.74 0.00 0.00 1.40
3254 3682 3.405823 AACATTGCTGTTCATTTGGGG 57.594 42.857 0.00 0.00 41.86 4.96
3264 3692 6.552725 TGCTGTTCATTTGGGGCATTATAATA 59.447 34.615 0.00 0.00 0.00 0.98
3274 3702 9.440761 TTTGGGGCATTATAATACCTAATGTTT 57.559 29.630 13.39 0.00 38.35 2.83
3294 3722 5.823570 TGTTTGGTCGGAGTTATTTTCTCAA 59.176 36.000 0.00 0.00 34.04 3.02
3296 3724 3.991773 TGGTCGGAGTTATTTTCTCAACG 59.008 43.478 0.00 0.00 34.04 4.10
3298 3726 4.143179 GGTCGGAGTTATTTTCTCAACGTG 60.143 45.833 0.00 0.00 34.04 4.49
3303 3731 6.292703 CGGAGTTATTTTCTCAACGTGTCTTT 60.293 38.462 0.00 0.00 34.04 2.52
3304 3732 6.851330 GGAGTTATTTTCTCAACGTGTCTTTG 59.149 38.462 0.00 0.00 34.04 2.77
3305 3733 7.316544 AGTTATTTTCTCAACGTGTCTTTGT 57.683 32.000 0.00 0.00 0.00 2.83
3306 3734 7.407337 AGTTATTTTCTCAACGTGTCTTTGTC 58.593 34.615 0.00 0.00 0.00 3.18
3362 3790 3.118811 AGAGTTTCTAGATGCTGTCAGGC 60.119 47.826 1.14 0.00 0.00 4.85
3374 3802 0.249120 TGTCAGGCAGTTATGGGTCG 59.751 55.000 0.00 0.00 0.00 4.79
3433 4339 5.812642 ACCTCGTATGAGATTTTAACTGCAG 59.187 40.000 13.48 13.48 45.57 4.41
3437 4343 6.531594 TCGTATGAGATTTTAACTGCAGAGTG 59.468 38.462 23.35 0.00 30.61 3.51
3439 4345 7.063426 CGTATGAGATTTTAACTGCAGAGTGAA 59.937 37.037 23.35 10.06 30.61 3.18
3456 4362 9.713740 GCAGAGTGAAAATTGATTAGATTACTG 57.286 33.333 0.00 0.00 0.00 2.74
3489 4415 5.801350 AACAACGACCAATCATCATACAG 57.199 39.130 0.00 0.00 0.00 2.74
3493 4419 2.728318 CGACCAATCATCATACAGCTCG 59.272 50.000 0.00 0.00 0.00 5.03
3499 4425 3.866883 TCATCATACAGCTCGACACAA 57.133 42.857 0.00 0.00 0.00 3.33
3500 4426 3.511699 TCATCATACAGCTCGACACAAC 58.488 45.455 0.00 0.00 0.00 3.32
3501 4427 3.056891 TCATCATACAGCTCGACACAACA 60.057 43.478 0.00 0.00 0.00 3.33
3502 4428 3.378911 TCATACAGCTCGACACAACAA 57.621 42.857 0.00 0.00 0.00 2.83
3503 4429 3.057019 TCATACAGCTCGACACAACAAC 58.943 45.455 0.00 0.00 0.00 3.32
3504 4430 2.588027 TACAGCTCGACACAACAACA 57.412 45.000 0.00 0.00 0.00 3.33
3505 4431 1.006832 ACAGCTCGACACAACAACAC 58.993 50.000 0.00 0.00 0.00 3.32
3506 4432 1.006086 CAGCTCGACACAACAACACA 58.994 50.000 0.00 0.00 0.00 3.72
3507 4433 1.599071 CAGCTCGACACAACAACACAT 59.401 47.619 0.00 0.00 0.00 3.21
3508 4434 2.799978 CAGCTCGACACAACAACACATA 59.200 45.455 0.00 0.00 0.00 2.29
3509 4435 2.800544 AGCTCGACACAACAACACATAC 59.199 45.455 0.00 0.00 0.00 2.39
3510 4436 2.542178 GCTCGACACAACAACACATACA 59.458 45.455 0.00 0.00 0.00 2.29
3511 4437 3.603857 GCTCGACACAACAACACATACAC 60.604 47.826 0.00 0.00 0.00 2.90
3512 4438 3.787785 TCGACACAACAACACATACACT 58.212 40.909 0.00 0.00 0.00 3.55
3513 4439 3.799963 TCGACACAACAACACATACACTC 59.200 43.478 0.00 0.00 0.00 3.51
3514 4440 3.553917 CGACACAACAACACATACACTCA 59.446 43.478 0.00 0.00 0.00 3.41
3515 4441 4.033472 CGACACAACAACACATACACTCAA 59.967 41.667 0.00 0.00 0.00 3.02
3516 4442 5.484173 ACACAACAACACATACACTCAAG 57.516 39.130 0.00 0.00 0.00 3.02
3517 4443 4.335315 ACACAACAACACATACACTCAAGG 59.665 41.667 0.00 0.00 0.00 3.61
3518 4444 3.315191 ACAACAACACATACACTCAAGGC 59.685 43.478 0.00 0.00 0.00 4.35
3519 4445 2.143122 ACAACACATACACTCAAGGCG 58.857 47.619 0.00 0.00 0.00 5.52
3523 4449 0.458543 ACATACACTCAAGGCGCTCG 60.459 55.000 7.64 0.00 0.00 5.03
3547 4473 0.726827 CACAACGCACACACTCAAGT 59.273 50.000 0.00 0.00 0.00 3.16
3561 4487 3.562973 CACTCAAGTCATGATACATGGGC 59.437 47.826 0.00 5.78 37.44 5.36
3570 4496 5.877012 GTCATGATACATGGGCGATAAGAAT 59.123 40.000 0.00 0.00 0.00 2.40
3580 4506 4.038763 TGGGCGATAAGAATAGGTACACAG 59.961 45.833 0.00 0.00 0.00 3.66
3596 4522 2.497675 ACACAGAAGAGCCGTGTATGAT 59.502 45.455 0.00 0.00 41.90 2.45
3597 4523 2.862536 CACAGAAGAGCCGTGTATGATG 59.137 50.000 0.00 0.00 0.00 3.07
3602 4528 1.831106 AGAGCCGTGTATGATGAACCA 59.169 47.619 0.00 0.00 0.00 3.67
3605 4531 1.134521 GCCGTGTATGATGAACCAGGA 60.135 52.381 0.00 0.00 0.00 3.86
3612 4538 4.586421 TGTATGATGAACCAGGAGCTCTAG 59.414 45.833 14.64 6.33 0.00 2.43
3618 4544 2.494530 CCAGGAGCTCTAGGACGGC 61.495 68.421 14.64 0.00 0.00 5.68
3620 4546 4.273257 GGAGCTCTAGGACGGCGC 62.273 72.222 14.64 0.00 0.00 6.53
3624 4550 2.413765 CTCTAGGACGGCGCCTTC 59.586 66.667 26.68 25.24 39.50 3.46
3681 4607 2.584608 CAGCGATCGGGGTTTCCT 59.415 61.111 18.30 0.00 0.00 3.36
3705 4632 1.822371 AGGGAGAAGAAGAAGACTCGC 59.178 52.381 0.00 0.00 40.77 5.03
3707 4634 1.468395 GGAGAAGAAGAAGACTCGCGG 60.468 57.143 6.13 0.00 0.00 6.46
3708 4635 0.109039 AGAAGAAGAAGACTCGCGGC 60.109 55.000 6.13 0.00 0.00 6.53
3724 4651 1.374252 GGCGACGCCTTCAAGAAGA 60.374 57.895 31.30 0.00 46.69 2.87
3725 4652 0.949105 GGCGACGCCTTCAAGAAGAA 60.949 55.000 31.30 0.00 46.69 2.52
3726 4653 0.865769 GCGACGCCTTCAAGAAGAAA 59.134 50.000 9.14 0.00 40.79 2.52
3727 4654 1.263217 GCGACGCCTTCAAGAAGAAAA 59.737 47.619 9.14 0.00 40.79 2.29
3728 4655 2.904915 CGACGCCTTCAAGAAGAAAAC 58.095 47.619 11.25 0.59 40.79 2.43
3729 4656 2.286833 CGACGCCTTCAAGAAGAAAACA 59.713 45.455 11.25 0.00 40.79 2.83
3730 4657 3.242608 CGACGCCTTCAAGAAGAAAACAA 60.243 43.478 11.25 0.00 40.79 2.83
3731 4658 4.028852 ACGCCTTCAAGAAGAAAACAAC 57.971 40.909 11.25 0.00 40.79 3.32
3732 4659 3.442273 ACGCCTTCAAGAAGAAAACAACA 59.558 39.130 11.25 0.00 40.79 3.33
3733 4660 3.791353 CGCCTTCAAGAAGAAAACAACAC 59.209 43.478 11.25 0.00 40.79 3.32
3734 4661 4.112634 GCCTTCAAGAAGAAAACAACACC 58.887 43.478 11.25 0.00 40.79 4.16
3735 4662 4.142160 GCCTTCAAGAAGAAAACAACACCT 60.142 41.667 11.25 0.00 40.79 4.00
3736 4663 5.067283 GCCTTCAAGAAGAAAACAACACCTA 59.933 40.000 11.25 0.00 40.79 3.08
3737 4664 6.405397 GCCTTCAAGAAGAAAACAACACCTAA 60.405 38.462 11.25 0.00 40.79 2.69
3738 4665 7.543756 CCTTCAAGAAGAAAACAACACCTAAA 58.456 34.615 11.25 0.00 40.79 1.85
3739 4666 8.197439 CCTTCAAGAAGAAAACAACACCTAAAT 58.803 33.333 11.25 0.00 40.79 1.40
3740 4667 8.925161 TTCAAGAAGAAAACAACACCTAAATG 57.075 30.769 0.00 0.00 32.05 2.32
3741 4668 6.978080 TCAAGAAGAAAACAACACCTAAATGC 59.022 34.615 0.00 0.00 0.00 3.56
3742 4669 6.715347 AGAAGAAAACAACACCTAAATGCT 57.285 33.333 0.00 0.00 0.00 3.79
3743 4670 6.507023 AGAAGAAAACAACACCTAAATGCTG 58.493 36.000 0.00 0.00 0.00 4.41
3744 4671 4.620982 AGAAAACAACACCTAAATGCTGC 58.379 39.130 0.00 0.00 0.00 5.25
3745 4672 3.385193 AAACAACACCTAAATGCTGCC 57.615 42.857 0.00 0.00 0.00 4.85
3746 4673 1.993956 ACAACACCTAAATGCTGCCA 58.006 45.000 0.00 0.00 0.00 4.92
3747 4674 1.613437 ACAACACCTAAATGCTGCCAC 59.387 47.619 0.00 0.00 0.00 5.01
3748 4675 1.067635 CAACACCTAAATGCTGCCACC 60.068 52.381 0.00 0.00 0.00 4.61
3749 4676 0.960364 ACACCTAAATGCTGCCACCG 60.960 55.000 0.00 0.00 0.00 4.94
3750 4677 2.046285 ACCTAAATGCTGCCACCGC 61.046 57.895 0.00 0.00 0.00 5.68
3751 4678 2.774799 CCTAAATGCTGCCACCGCC 61.775 63.158 0.00 0.00 0.00 6.13
3752 4679 2.753849 TAAATGCTGCCACCGCCC 60.754 61.111 0.00 0.00 0.00 6.13
3770 4697 2.822399 GATCCAGCGATCGGGGTT 59.178 61.111 18.30 2.11 35.83 4.11
3771 4698 1.146263 GATCCAGCGATCGGGGTTT 59.854 57.895 18.30 0.00 35.83 3.27
3772 4699 0.880718 GATCCAGCGATCGGGGTTTC 60.881 60.000 18.30 5.42 35.83 2.78
3773 4700 2.325393 ATCCAGCGATCGGGGTTTCC 62.325 60.000 18.30 0.00 0.00 3.13
3774 4701 2.584608 CAGCGATCGGGGTTTCCT 59.415 61.111 18.30 0.00 0.00 3.36
3775 4702 1.521681 CAGCGATCGGGGTTTCCTC 60.522 63.158 18.30 0.00 0.00 3.71
3776 4703 1.987855 AGCGATCGGGGTTTCCTCA 60.988 57.895 18.30 0.00 0.00 3.86
3777 4704 1.521681 GCGATCGGGGTTTCCTCAG 60.522 63.158 18.30 0.00 0.00 3.35
3778 4705 1.956629 GCGATCGGGGTTTCCTCAGA 61.957 60.000 18.30 0.00 0.00 3.27
3779 4706 0.103208 CGATCGGGGTTTCCTCAGAG 59.897 60.000 7.38 0.00 0.00 3.35
3780 4707 0.466124 GATCGGGGTTTCCTCAGAGG 59.534 60.000 10.70 10.70 36.46 3.69
3781 4708 0.983378 ATCGGGGTTTCCTCAGAGGG 60.983 60.000 17.10 0.00 35.59 4.30
3782 4709 1.612442 CGGGGTTTCCTCAGAGGGA 60.612 63.158 17.10 4.62 35.59 4.20
3783 4710 1.617947 CGGGGTTTCCTCAGAGGGAG 61.618 65.000 17.10 0.00 43.65 4.30
3795 4722 4.396357 TCAGAGGGAGAAGAAGAAGAGT 57.604 45.455 0.00 0.00 0.00 3.24
3796 4723 4.746466 TCAGAGGGAGAAGAAGAAGAGTT 58.254 43.478 0.00 0.00 0.00 3.01
3797 4724 4.526262 TCAGAGGGAGAAGAAGAAGAGTTG 59.474 45.833 0.00 0.00 0.00 3.16
3798 4725 3.260632 AGAGGGAGAAGAAGAAGAGTTGC 59.739 47.826 0.00 0.00 0.00 4.17
3799 4726 2.028567 AGGGAGAAGAAGAAGAGTTGCG 60.029 50.000 0.00 0.00 0.00 4.85
3800 4727 2.342179 GGAGAAGAAGAAGAGTTGCGG 58.658 52.381 0.00 0.00 0.00 5.69
3801 4728 1.729517 GAGAAGAAGAAGAGTTGCGGC 59.270 52.381 0.00 0.00 0.00 6.53
3802 4729 0.440371 GAAGAAGAAGAGTTGCGGCG 59.560 55.000 0.51 0.51 0.00 6.46
3803 4730 0.033504 AAGAAGAAGAGTTGCGGCGA 59.966 50.000 12.98 0.00 0.00 5.54
3804 4731 0.667792 AGAAGAAGAGTTGCGGCGAC 60.668 55.000 12.98 12.54 0.00 5.19
3827 4754 2.696506 CTTTAAGAAGGGGACGACACC 58.303 52.381 0.00 0.00 40.50 4.16
3828 4755 1.719529 TTAAGAAGGGGACGACACCA 58.280 50.000 9.31 0.00 43.15 4.17
3829 4756 1.946984 TAAGAAGGGGACGACACCAT 58.053 50.000 9.31 0.00 43.15 3.55
3830 4757 1.946984 AAGAAGGGGACGACACCATA 58.053 50.000 9.31 0.00 43.15 2.74
3831 4758 1.486211 AGAAGGGGACGACACCATAG 58.514 55.000 9.31 0.00 43.15 2.23
3832 4759 0.464452 GAAGGGGACGACACCATAGG 59.536 60.000 9.31 0.00 43.15 2.57
3833 4760 1.623542 AAGGGGACGACACCATAGGC 61.624 60.000 9.31 0.00 43.15 3.93
3834 4761 2.106332 GGGACGACACCATAGGCG 59.894 66.667 0.00 0.00 0.00 5.52
3835 4762 2.585247 GGACGACACCATAGGCGC 60.585 66.667 0.00 0.00 0.00 6.53
3836 4763 2.585247 GACGACACCATAGGCGCC 60.585 66.667 21.89 21.89 0.00 6.53
3837 4764 3.365291 GACGACACCATAGGCGCCA 62.365 63.158 31.54 15.56 0.00 5.69
3838 4765 2.890474 CGACACCATAGGCGCCAC 60.890 66.667 31.54 1.27 0.00 5.01
3839 4766 2.584608 GACACCATAGGCGCCACT 59.415 61.111 31.54 12.06 0.00 4.00
3840 4767 1.815421 GACACCATAGGCGCCACTG 60.815 63.158 31.54 24.01 0.00 3.66
3841 4768 3.204827 CACCATAGGCGCCACTGC 61.205 66.667 31.54 0.00 0.00 4.40
3852 4779 4.742201 CCACTGCCGTCGACCTGG 62.742 72.222 10.58 7.59 0.00 4.45
3858 4785 2.279517 CCGTCGACCTGGCATAGC 60.280 66.667 10.58 0.00 0.00 2.97
3878 4805 1.463674 CAGAATGGGTTTTCTCCCCG 58.536 55.000 0.00 0.00 45.86 5.73
3879 4806 0.331616 AGAATGGGTTTTCTCCCCGG 59.668 55.000 0.00 0.00 45.86 5.73
3880 4807 1.304962 AATGGGTTTTCTCCCCGGC 60.305 57.895 0.00 0.00 45.86 6.13
3881 4808 2.087857 AATGGGTTTTCTCCCCGGCA 62.088 55.000 0.00 0.00 45.86 5.69
3882 4809 2.675423 GGGTTTTCTCCCCGGCAC 60.675 66.667 0.00 0.00 41.54 5.01
3883 4810 2.675423 GGTTTTCTCCCCGGCACC 60.675 66.667 0.00 0.00 0.00 5.01
3884 4811 2.114411 GTTTTCTCCCCGGCACCA 59.886 61.111 0.00 0.00 0.00 4.17
3885 4812 2.114411 TTTTCTCCCCGGCACCAC 59.886 61.111 0.00 0.00 0.00 4.16
3886 4813 3.835790 TTTTCTCCCCGGCACCACG 62.836 63.158 0.00 0.00 0.00 4.94
3897 4824 3.034569 GCACCACGCCATCATTTTC 57.965 52.632 0.00 0.00 32.94 2.29
3898 4825 0.243365 GCACCACGCCATCATTTTCA 59.757 50.000 0.00 0.00 32.94 2.69
3899 4826 1.336702 GCACCACGCCATCATTTTCAA 60.337 47.619 0.00 0.00 32.94 2.69
3900 4827 2.865670 GCACCACGCCATCATTTTCAAA 60.866 45.455 0.00 0.00 32.94 2.69
3901 4828 2.730928 CACCACGCCATCATTTTCAAAC 59.269 45.455 0.00 0.00 0.00 2.93
3902 4829 1.984990 CCACGCCATCATTTTCAAACG 59.015 47.619 0.00 0.00 0.00 3.60
3903 4830 1.984990 CACGCCATCATTTTCAAACGG 59.015 47.619 0.00 0.00 0.00 4.44
3904 4831 1.067915 ACGCCATCATTTTCAAACGGG 60.068 47.619 0.00 0.00 0.00 5.28
3905 4832 1.735369 CGCCATCATTTTCAAACGGGG 60.735 52.381 0.00 0.00 0.00 5.73
3906 4833 1.275010 GCCATCATTTTCAAACGGGGT 59.725 47.619 0.00 0.00 0.00 4.95
3907 4834 2.494073 GCCATCATTTTCAAACGGGGTA 59.506 45.455 0.00 0.00 0.00 3.69
3908 4835 3.132111 GCCATCATTTTCAAACGGGGTAT 59.868 43.478 0.00 0.00 0.00 2.73
3909 4836 4.339814 GCCATCATTTTCAAACGGGGTATA 59.660 41.667 0.00 0.00 0.00 1.47
3910 4837 5.735070 GCCATCATTTTCAAACGGGGTATAC 60.735 44.000 0.00 0.00 0.00 1.47
3911 4838 5.221165 CCATCATTTTCAAACGGGGTATACC 60.221 44.000 13.99 13.99 39.11 2.73
3912 4839 4.919793 TCATTTTCAAACGGGGTATACCA 58.080 39.130 23.33 0.00 42.91 3.25
3913 4840 5.322754 TCATTTTCAAACGGGGTATACCAA 58.677 37.500 23.33 6.15 42.91 3.67
3914 4841 5.416326 TCATTTTCAAACGGGGTATACCAAG 59.584 40.000 23.33 17.44 42.91 3.61
3915 4842 2.406596 TCAAACGGGGTATACCAAGC 57.593 50.000 23.33 6.18 42.91 4.01
3916 4843 1.065272 TCAAACGGGGTATACCAAGCC 60.065 52.381 23.33 14.03 42.91 4.35
3917 4844 0.993470 AAACGGGGTATACCAAGCCA 59.007 50.000 23.33 0.00 42.91 4.75
3918 4845 1.218844 AACGGGGTATACCAAGCCAT 58.781 50.000 23.33 1.16 42.91 4.40
3919 4846 1.218844 ACGGGGTATACCAAGCCATT 58.781 50.000 23.33 3.05 42.91 3.16
3920 4847 1.133915 ACGGGGTATACCAAGCCATTG 60.134 52.381 23.33 6.00 42.91 2.82
3921 4848 1.133915 CGGGGTATACCAAGCCATTGT 60.134 52.381 23.33 0.00 42.91 2.71
3922 4849 2.685522 CGGGGTATACCAAGCCATTGTT 60.686 50.000 23.33 0.00 42.91 2.83
3923 4850 3.371034 GGGGTATACCAAGCCATTGTTT 58.629 45.455 23.33 0.00 42.91 2.83
3924 4851 3.132111 GGGGTATACCAAGCCATTGTTTG 59.868 47.826 23.33 0.00 42.91 2.93
3925 4852 3.430236 GGGTATACCAAGCCATTGTTTGC 60.430 47.826 23.33 0.00 39.85 3.68
3926 4853 3.430236 GGTATACCAAGCCATTGTTTGCC 60.430 47.826 17.44 0.00 34.39 4.52
3927 4854 1.709578 TACCAAGCCATTGTTTGCCA 58.290 45.000 0.00 0.00 34.39 4.92
3928 4855 0.106521 ACCAAGCCATTGTTTGCCAC 59.893 50.000 0.00 0.00 34.39 5.01
3929 4856 0.106335 CCAAGCCATTGTTTGCCACA 59.894 50.000 0.00 0.00 34.39 4.17
3930 4857 1.219646 CAAGCCATTGTTTGCCACAC 58.780 50.000 0.00 0.00 33.98 3.82
3931 4858 0.106521 AAGCCATTGTTTGCCACACC 59.893 50.000 0.00 0.00 33.98 4.16
3932 4859 1.047596 AGCCATTGTTTGCCACACCA 61.048 50.000 0.00 0.00 33.98 4.17
3933 4860 0.879839 GCCATTGTTTGCCACACCAC 60.880 55.000 0.00 0.00 33.98 4.16
3934 4861 0.597118 CCATTGTTTGCCACACCACG 60.597 55.000 0.00 0.00 33.98 4.94
3935 4862 0.383590 CATTGTTTGCCACACCACGA 59.616 50.000 0.00 0.00 33.98 4.35
3936 4863 0.383949 ATTGTTTGCCACACCACGAC 59.616 50.000 0.00 0.00 33.98 4.34
3937 4864 1.658686 TTGTTTGCCACACCACGACC 61.659 55.000 0.00 0.00 33.98 4.79
3938 4865 2.897846 TTTGCCACACCACGACCG 60.898 61.111 0.00 0.00 0.00 4.79
3956 4883 2.668212 CCGCACACGAACCACCAT 60.668 61.111 0.00 0.00 43.93 3.55
3957 4884 2.555782 CGCACACGAACCACCATG 59.444 61.111 0.00 0.00 43.93 3.66
3958 4885 2.250939 CGCACACGAACCACCATGT 61.251 57.895 0.00 0.00 43.93 3.21
3959 4886 1.574428 GCACACGAACCACCATGTC 59.426 57.895 0.00 0.00 0.00 3.06
3960 4887 1.859398 CACACGAACCACCATGTCG 59.141 57.895 1.51 1.51 0.00 4.35
3961 4888 1.959226 ACACGAACCACCATGTCGC 60.959 57.895 2.87 0.00 0.00 5.19
3962 4889 2.358247 ACGAACCACCATGTCGCC 60.358 61.111 2.87 0.00 0.00 5.54
3963 4890 3.124921 CGAACCACCATGTCGCCC 61.125 66.667 0.00 0.00 0.00 6.13
3964 4891 3.124921 GAACCACCATGTCGCCCG 61.125 66.667 0.00 0.00 0.00 6.13
3979 4906 4.101790 CCGCACGACCATGGCAAC 62.102 66.667 13.04 2.68 0.00 4.17
3980 4907 4.101790 CGCACGACCATGGCAACC 62.102 66.667 13.04 0.00 0.00 3.77
3981 4908 2.983030 GCACGACCATGGCAACCA 60.983 61.111 13.04 0.00 38.19 3.67
3982 4909 2.981560 GCACGACCATGGCAACCAG 61.982 63.158 13.04 0.00 36.75 4.00
3983 4910 1.302431 CACGACCATGGCAACCAGA 60.302 57.895 13.04 0.00 36.75 3.86
3984 4911 1.302511 ACGACCATGGCAACCAGAC 60.303 57.895 13.04 0.00 36.75 3.51
3985 4912 2.040544 CGACCATGGCAACCAGACC 61.041 63.158 13.04 0.00 36.75 3.85
3986 4913 1.074775 GACCATGGCAACCAGACCA 59.925 57.895 13.04 0.00 36.75 4.02
3987 4914 1.228552 ACCATGGCAACCAGACCAC 60.229 57.895 13.04 0.00 39.19 4.16
3988 4915 1.228521 CCATGGCAACCAGACCACA 60.229 57.895 0.00 0.00 39.19 4.17
3989 4916 1.526575 CCATGGCAACCAGACCACAC 61.527 60.000 0.00 0.00 39.19 3.82
3990 4917 1.228552 ATGGCAACCAGACCACACC 60.229 57.895 0.00 0.00 39.19 4.16
3991 4918 1.719063 ATGGCAACCAGACCACACCT 61.719 55.000 0.00 0.00 39.19 4.00
3992 4919 1.057275 TGGCAACCAGACCACACCTA 61.057 55.000 0.00 0.00 0.00 3.08
3993 4920 0.109723 GGCAACCAGACCACACCTAA 59.890 55.000 0.00 0.00 0.00 2.69
3994 4921 1.235724 GCAACCAGACCACACCTAAC 58.764 55.000 0.00 0.00 0.00 2.34
3995 4922 1.892209 CAACCAGACCACACCTAACC 58.108 55.000 0.00 0.00 0.00 2.85
3996 4923 0.769247 AACCAGACCACACCTAACCC 59.231 55.000 0.00 0.00 0.00 4.11
3997 4924 1.131928 ACCAGACCACACCTAACCCC 61.132 60.000 0.00 0.00 0.00 4.95
3998 4925 1.295423 CAGACCACACCTAACCCCG 59.705 63.158 0.00 0.00 0.00 5.73
3999 4926 1.156803 AGACCACACCTAACCCCGA 59.843 57.895 0.00 0.00 0.00 5.14
4000 4927 0.903454 AGACCACACCTAACCCCGAG 60.903 60.000 0.00 0.00 0.00 4.63
4001 4928 2.267961 CCACACCTAACCCCGAGC 59.732 66.667 0.00 0.00 0.00 5.03
4002 4929 2.291043 CCACACCTAACCCCGAGCT 61.291 63.158 0.00 0.00 0.00 4.09
4003 4930 1.218316 CACACCTAACCCCGAGCTC 59.782 63.158 2.73 2.73 0.00 4.09
4004 4931 1.988406 ACACCTAACCCCGAGCTCC 60.988 63.158 8.47 0.00 0.00 4.70
4005 4932 2.758737 ACCTAACCCCGAGCTCCG 60.759 66.667 8.47 0.80 38.18 4.63
4006 4933 4.222847 CCTAACCCCGAGCTCCGC 62.223 72.222 8.47 0.00 36.84 5.54
4007 4934 4.222847 CTAACCCCGAGCTCCGCC 62.223 72.222 8.47 0.00 36.84 6.13
4015 4942 4.704833 GAGCTCCGCCCACAAGCA 62.705 66.667 0.87 0.00 38.51 3.91
4016 4943 4.269523 AGCTCCGCCCACAAGCAA 62.270 61.111 0.00 0.00 38.51 3.91
4017 4944 4.043200 GCTCCGCCCACAAGCAAC 62.043 66.667 0.00 0.00 36.06 4.17
4018 4945 3.726517 CTCCGCCCACAAGCAACG 61.727 66.667 0.00 0.00 0.00 4.10
4024 4951 3.047280 CCACAAGCAACGCGGCTA 61.047 61.111 12.47 0.00 45.07 3.93
4025 4952 2.173382 CACAAGCAACGCGGCTAC 59.827 61.111 12.47 0.00 45.07 3.58
4026 4953 3.047877 ACAAGCAACGCGGCTACC 61.048 61.111 12.47 0.00 45.07 3.18
4027 4954 3.047280 CAAGCAACGCGGCTACCA 61.047 61.111 12.47 0.00 45.07 3.25
4028 4955 3.047877 AAGCAACGCGGCTACCAC 61.048 61.111 12.47 0.00 45.07 4.16
4031 4958 3.419759 CAACGCGGCTACCACCAC 61.420 66.667 12.47 0.00 0.00 4.16
4034 4961 4.728102 CGCGGCTACCACCACGAA 62.728 66.667 0.00 0.00 37.44 3.85
4035 4962 2.813908 GCGGCTACCACCACGAAG 60.814 66.667 0.00 0.00 0.00 3.79
4036 4963 2.125673 CGGCTACCACCACGAAGG 60.126 66.667 0.00 0.00 45.67 3.46
4037 4964 2.436115 GGCTACCACCACGAAGGC 60.436 66.667 0.00 0.00 43.14 4.35
4038 4965 2.436115 GCTACCACCACGAAGGCC 60.436 66.667 0.00 0.00 43.14 5.19
4039 4966 2.125673 CTACCACCACGAAGGCCG 60.126 66.667 0.00 0.00 43.14 6.13
4040 4967 4.382320 TACCACCACGAAGGCCGC 62.382 66.667 0.00 0.00 43.14 6.53
4058 4985 4.452733 CGCCCCGGAGTCCAAGAC 62.453 72.222 10.49 0.00 0.00 3.01
4059 4986 4.097361 GCCCCGGAGTCCAAGACC 62.097 72.222 10.49 0.00 32.18 3.85
4060 4987 3.400054 CCCCGGAGTCCAAGACCC 61.400 72.222 10.49 0.00 32.18 4.46
4061 4988 3.400054 CCCGGAGTCCAAGACCCC 61.400 72.222 10.49 0.00 32.18 4.95
4064 4991 2.979649 GGAGTCCAAGACCCCGAC 59.020 66.667 3.60 0.00 32.18 4.79
4065 4992 1.911766 GGAGTCCAAGACCCCGACA 60.912 63.158 3.60 0.00 32.18 4.35
4066 4993 1.292541 GAGTCCAAGACCCCGACAC 59.707 63.158 0.00 0.00 32.18 3.67
4067 4994 2.168666 GAGTCCAAGACCCCGACACC 62.169 65.000 0.00 0.00 32.18 4.16
4068 4995 2.122769 TCCAAGACCCCGACACCA 60.123 61.111 0.00 0.00 0.00 4.17
4069 4996 2.032071 CCAAGACCCCGACACCAC 59.968 66.667 0.00 0.00 0.00 4.16
4070 4997 2.032071 CAAGACCCCGACACCACC 59.968 66.667 0.00 0.00 0.00 4.61
4071 4998 3.246880 AAGACCCCGACACCACCC 61.247 66.667 0.00 0.00 0.00 4.61
4077 5004 4.329545 CCGACACCACCCCACCTG 62.330 72.222 0.00 0.00 0.00 4.00
4078 5005 3.238497 CGACACCACCCCACCTGA 61.238 66.667 0.00 0.00 0.00 3.86
4079 5006 2.750350 GACACCACCCCACCTGAG 59.250 66.667 0.00 0.00 0.00 3.35
4080 5007 2.854032 ACACCACCCCACCTGAGG 60.854 66.667 0.00 0.00 0.00 3.86
4081 5008 4.351054 CACCACCCCACCTGAGGC 62.351 72.222 0.00 0.00 0.00 4.70
4086 5013 4.659172 CCCCACCTGAGGCGCAAA 62.659 66.667 10.83 0.00 0.00 3.68
4087 5014 2.597217 CCCACCTGAGGCGCAAAA 60.597 61.111 10.83 0.00 0.00 2.44
4088 5015 2.644992 CCACCTGAGGCGCAAAAC 59.355 61.111 10.83 0.00 0.00 2.43
4089 5016 1.898574 CCACCTGAGGCGCAAAACT 60.899 57.895 10.83 0.00 0.00 2.66
4090 5017 0.605319 CCACCTGAGGCGCAAAACTA 60.605 55.000 10.83 0.00 0.00 2.24
4091 5018 0.517316 CACCTGAGGCGCAAAACTAC 59.483 55.000 10.83 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 94 3.132139 CCGTCCCGCGAGAGAGAA 61.132 66.667 8.23 0.00 44.77 2.87
202 214 4.202070 CGTGGAGAGGAAGGACTAATCTTC 60.202 50.000 0.00 0.00 39.73 2.87
203 215 3.702045 CGTGGAGAGGAAGGACTAATCTT 59.298 47.826 0.00 0.00 0.00 2.40
204 216 3.292460 CGTGGAGAGGAAGGACTAATCT 58.708 50.000 0.00 0.00 0.00 2.40
210 227 2.579738 GCCGTGGAGAGGAAGGAC 59.420 66.667 0.00 0.00 0.00 3.85
407 435 7.442364 TCAATTTAAGCTGTATGCCACTAGATC 59.558 37.037 0.00 0.00 44.23 2.75
474 507 6.833342 AAAGAAAATAAAACACAGCAGCAG 57.167 33.333 0.00 0.00 0.00 4.24
475 508 7.548780 AGAAAAAGAAAATAAAACACAGCAGCA 59.451 29.630 0.00 0.00 0.00 4.41
476 509 7.847564 CAGAAAAAGAAAATAAAACACAGCAGC 59.152 33.333 0.00 0.00 0.00 5.25
477 510 8.872845 ACAGAAAAAGAAAATAAAACACAGCAG 58.127 29.630 0.00 0.00 0.00 4.24
478 511 8.770438 ACAGAAAAAGAAAATAAAACACAGCA 57.230 26.923 0.00 0.00 0.00 4.41
479 512 9.476761 CAACAGAAAAAGAAAATAAAACACAGC 57.523 29.630 0.00 0.00 0.00 4.40
522 555 1.267121 GAACACTGGGGCTCTGACTA 58.733 55.000 0.00 0.00 0.00 2.59
528 561 0.402121 AGAAAGGAACACTGGGGCTC 59.598 55.000 0.00 0.00 0.00 4.70
536 570 7.488150 AGAAAAATCGACAAAAGAAAGGAACAC 59.512 33.333 0.00 0.00 0.00 3.32
539 573 9.116067 TCTAGAAAAATCGACAAAAGAAAGGAA 57.884 29.630 0.00 0.00 0.00 3.36
540 574 8.671384 TCTAGAAAAATCGACAAAAGAAAGGA 57.329 30.769 0.00 0.00 0.00 3.36
541 575 8.774586 TCTCTAGAAAAATCGACAAAAGAAAGG 58.225 33.333 0.00 0.00 0.00 3.11
561 596 0.881159 GGCAGCAGCAGCATCTCTAG 60.881 60.000 12.41 0.00 45.49 2.43
580 617 7.812669 ACTTGGGATAAAACATAAAAGAAAGCG 59.187 33.333 0.00 0.00 0.00 4.68
584 621 8.293867 CGTCACTTGGGATAAAACATAAAAGAA 58.706 33.333 0.00 0.00 0.00 2.52
585 622 7.662258 TCGTCACTTGGGATAAAACATAAAAGA 59.338 33.333 0.00 0.00 0.00 2.52
586 623 7.812648 TCGTCACTTGGGATAAAACATAAAAG 58.187 34.615 0.00 0.00 0.00 2.27
587 624 7.747155 TCGTCACTTGGGATAAAACATAAAA 57.253 32.000 0.00 0.00 0.00 1.52
588 625 7.608376 TCATCGTCACTTGGGATAAAACATAAA 59.392 33.333 0.00 0.00 0.00 1.40
591 628 5.496556 TCATCGTCACTTGGGATAAAACAT 58.503 37.500 0.00 0.00 0.00 2.71
592 629 4.900684 TCATCGTCACTTGGGATAAAACA 58.099 39.130 0.00 0.00 0.00 2.83
593 630 5.411669 AGTTCATCGTCACTTGGGATAAAAC 59.588 40.000 0.00 0.00 0.00 2.43
608 645 5.410132 CGTAGGAGATCATCTAGTTCATCGT 59.590 44.000 0.00 0.00 0.00 3.73
670 707 1.931296 TGGCAACCACCCCTGTAAA 59.069 52.632 0.00 0.00 0.00 2.01
671 708 3.675644 TGGCAACCACCCCTGTAA 58.324 55.556 0.00 0.00 0.00 2.41
760 797 5.560724 ACTGCACTAATGAGTAAATGTGGT 58.439 37.500 0.00 0.00 33.32 4.16
762 799 5.725042 GCGACTGCACTAATGAGTAAATGTG 60.725 44.000 0.00 0.00 42.15 3.21
771 808 3.751479 ATATGGCGACTGCACTAATGA 57.249 42.857 0.00 0.00 45.35 2.57
799 836 8.015658 CAGACTACTGGTTTATGCAAAAAGTAC 58.984 37.037 0.00 0.00 40.14 2.73
801 838 6.970484 CAGACTACTGGTTTATGCAAAAAGT 58.030 36.000 0.00 0.00 40.14 2.66
845 882 3.103447 TCAGCGGCTTATCTCAATGAG 57.897 47.619 3.38 3.38 0.00 2.90
849 886 1.743772 GCCTTCAGCGGCTTATCTCAA 60.744 52.381 0.00 0.00 46.63 3.02
851 888 2.611012 GCCTTCAGCGGCTTATCTC 58.389 57.895 0.00 0.00 46.63 2.75
861 898 0.807496 AGAAAATCAGCGCCTTCAGC 59.193 50.000 2.29 0.00 38.52 4.26
890 929 6.009474 CGCGCTATAGTTTTGCACATATAAG 58.991 40.000 5.56 0.00 0.00 1.73
960 1000 8.514594 TGCTCATTTTAAAACATGGAGAGTAAG 58.485 33.333 17.83 3.78 0.00 2.34
1075 1115 9.742144 TGATAACAAAGGGCAGTAAATTAGTAA 57.258 29.630 0.00 0.00 0.00 2.24
1076 1116 9.169592 GTGATAACAAAGGGCAGTAAATTAGTA 57.830 33.333 0.00 0.00 0.00 1.82
1120 1164 5.050091 GCTATGGATATTTGACCACGTGAAG 60.050 44.000 19.30 3.27 39.06 3.02
1168 1212 5.268118 TGTGTGCCACAATTGATACAAAA 57.732 34.783 13.59 1.65 41.69 2.44
1279 1325 0.694771 ATCAACCTGAGCCTGAGCAA 59.305 50.000 0.00 0.00 43.56 3.91
1280 1326 0.035725 CATCAACCTGAGCCTGAGCA 60.036 55.000 0.00 0.00 43.56 4.26
1340 1386 1.069978 TGACCTTCGTTGATGTGCTCA 59.930 47.619 0.00 0.00 0.00 4.26
1391 1437 1.056660 ACTTGATGTCCAGGAACGGT 58.943 50.000 0.00 0.00 0.00 4.83
1395 1441 1.142667 TGCACACTTGATGTCCAGGAA 59.857 47.619 0.00 0.00 40.64 3.36
1434 1480 2.687935 ACAACCTTGTGAACCATGTCAC 59.312 45.455 9.04 9.04 46.74 3.67
1492 1538 1.340017 CGGTCAGTGGAATGAACCCAT 60.340 52.381 0.00 0.00 33.06 4.00
1493 1539 0.036164 CGGTCAGTGGAATGAACCCA 59.964 55.000 0.00 0.00 33.06 4.51
1664 1710 1.202568 TCATCAGCCTCGCTATGGTTG 60.203 52.381 0.00 0.00 36.40 3.77
1672 1718 3.309961 TGAATCTATCATCAGCCTCGC 57.690 47.619 0.00 0.00 31.50 5.03
1700 1746 5.701290 AGTTGAGACAGTGTAAATAAGCCAC 59.299 40.000 0.00 0.00 0.00 5.01
1714 1760 1.517242 GGCCAACAGAGTTGAGACAG 58.483 55.000 11.19 0.00 0.00 3.51
1724 1770 2.288025 GGTCGTAGGGGCCAACAGA 61.288 63.158 4.39 2.53 0.00 3.41
1725 1771 2.267961 GGTCGTAGGGGCCAACAG 59.732 66.667 4.39 0.07 0.00 3.16
1793 1839 5.411669 TGCTGCTGCTATATGAAATCTCATG 59.588 40.000 17.00 0.00 40.25 3.07
1857 1905 7.243487 GCCTTCTCAAAACAAAAAGGAAAAAG 58.757 34.615 3.71 0.00 39.05 2.27
1862 1920 3.181480 CCGCCTTCTCAAAACAAAAAGGA 60.181 43.478 3.71 0.00 39.05 3.36
1877 1935 0.602905 CCCGGTTGATATCCGCCTTC 60.603 60.000 0.00 0.00 45.71 3.46
1955 2013 2.870175 CACCCATTTGTGTACTTCCCA 58.130 47.619 0.00 0.00 0.00 4.37
2033 2091 8.418662 TGCCTAGTAAGTATACCTGTATGTTTG 58.581 37.037 0.00 0.00 32.08 2.93
2181 2531 6.459923 GGAACACCAAAATGGCTAATAAACA 58.540 36.000 0.00 0.00 42.67 2.83
2200 2550 1.537638 ACATGCAAAATACGCGGAACA 59.462 42.857 12.47 0.00 0.00 3.18
2258 2610 4.910458 ACCTTAGCTGTGGTACAAGATT 57.090 40.909 10.24 0.00 44.16 2.40
2324 2677 5.726397 TGCGTTTACTCTATATGGTGTGTT 58.274 37.500 4.24 0.00 0.00 3.32
2369 2722 0.251354 ATGTCCAGCTCAGCGACAAT 59.749 50.000 10.93 0.00 0.00 2.71
2420 2773 3.951680 GAGGTGGTGAAAAGAACCTGAAA 59.048 43.478 0.00 0.00 43.12 2.69
2457 2810 2.183478 TGTCAGTAATGCTGTGTGGG 57.817 50.000 0.00 0.00 45.23 4.61
2611 2972 2.158561 GACCCAATGTGCTTGTGCCC 62.159 60.000 0.00 0.00 38.71 5.36
2758 3122 3.610911 GGTGTGAGAAAAGGTGATAGGG 58.389 50.000 0.00 0.00 0.00 3.53
2834 3199 5.885912 TGATCCCCTGTATTTTAAGCTTGTC 59.114 40.000 9.86 0.00 0.00 3.18
2846 3211 3.397527 ACTTGTGGATGATCCCCTGTAT 58.602 45.455 9.36 0.00 35.03 2.29
3004 3369 4.343239 TCACCGTCAGATTCTGATGATGAT 59.657 41.667 29.36 13.87 42.95 2.45
3074 3439 9.334693 GAAAATGTTTCATTCTGTTAGCACTAG 57.665 33.333 0.00 0.00 0.00 2.57
3083 3448 8.695456 AGTAAACCAGAAAATGTTTCATTCTGT 58.305 29.630 12.24 0.00 45.39 3.41
3094 3459 7.712797 ACCAGTACAAAGTAAACCAGAAAATG 58.287 34.615 0.00 0.00 0.00 2.32
3135 3500 9.574458 GCATAGATCTGTAGCGAGAAAAATATA 57.426 33.333 5.18 0.00 0.00 0.86
3150 3515 8.864087 TGTTATCAATCACTAGCATAGATCTGT 58.136 33.333 5.18 0.00 42.77 3.41
3151 3516 9.702494 TTGTTATCAATCACTAGCATAGATCTG 57.298 33.333 5.18 0.00 42.77 2.90
3217 3630 9.715123 CAGCAATGTTAAATGACGATTATTGTA 57.285 29.630 0.00 0.00 0.00 2.41
3218 3631 8.243426 ACAGCAATGTTAAATGACGATTATTGT 58.757 29.630 0.00 0.00 0.00 2.71
3219 3632 8.619146 ACAGCAATGTTAAATGACGATTATTG 57.381 30.769 0.00 0.00 0.00 1.90
3220 3633 9.289303 GAACAGCAATGTTAAATGACGATTATT 57.711 29.630 0.00 0.00 31.35 1.40
3221 3634 8.458052 TGAACAGCAATGTTAAATGACGATTAT 58.542 29.630 0.00 0.00 31.35 1.28
3222 3635 7.811653 TGAACAGCAATGTTAAATGACGATTA 58.188 30.769 0.00 0.00 31.35 1.75
3223 3636 6.676950 TGAACAGCAATGTTAAATGACGATT 58.323 32.000 0.00 0.00 31.35 3.34
3224 3637 6.252967 TGAACAGCAATGTTAAATGACGAT 57.747 33.333 0.00 0.00 31.35 3.73
3225 3638 5.681337 TGAACAGCAATGTTAAATGACGA 57.319 34.783 0.00 0.00 31.35 4.20
3226 3639 6.932901 AATGAACAGCAATGTTAAATGACG 57.067 33.333 0.00 0.00 31.35 4.35
3227 3640 7.360269 CCCAAATGAACAGCAATGTTAAATGAC 60.360 37.037 0.00 0.00 31.35 3.06
3228 3641 6.649973 CCCAAATGAACAGCAATGTTAAATGA 59.350 34.615 0.00 0.00 31.35 2.57
3229 3642 6.128227 CCCCAAATGAACAGCAATGTTAAATG 60.128 38.462 0.00 0.00 31.35 2.32
3234 3662 2.550639 GCCCCAAATGAACAGCAATGTT 60.551 45.455 0.00 0.00 34.29 2.71
3239 3667 1.350071 AATGCCCCAAATGAACAGCA 58.650 45.000 0.00 0.00 34.28 4.41
3254 3682 8.234546 CCGACCAAACATTAGGTATTATAATGC 58.765 37.037 8.28 6.61 42.04 3.56
3264 3692 3.782656 AACTCCGACCAAACATTAGGT 57.217 42.857 0.00 0.00 41.83 3.08
3274 3702 3.991773 CGTTGAGAAAATAACTCCGACCA 59.008 43.478 0.00 0.00 33.95 4.02
3294 3722 2.165641 TGAGTGACAGACAAAGACACGT 59.834 45.455 0.00 0.00 36.89 4.49
3296 3724 5.928839 ACATATGAGTGACAGACAAAGACAC 59.071 40.000 10.38 0.00 33.02 3.67
3298 3726 8.709386 ATTACATATGAGTGACAGACAAAGAC 57.291 34.615 10.38 0.00 0.00 3.01
3303 3731 5.221244 CCCGATTACATATGAGTGACAGACA 60.221 44.000 10.38 0.00 0.00 3.41
3304 3732 5.223382 CCCGATTACATATGAGTGACAGAC 58.777 45.833 10.38 0.00 0.00 3.51
3305 3733 4.262036 GCCCGATTACATATGAGTGACAGA 60.262 45.833 10.38 0.00 0.00 3.41
3306 3734 3.990469 GCCCGATTACATATGAGTGACAG 59.010 47.826 10.38 0.00 0.00 3.51
3362 3790 2.955614 AGAAACGACGACCCATAACTG 58.044 47.619 0.00 0.00 0.00 3.16
3374 3802 6.864165 GTGGAATCTAGGATCATAGAAACGAC 59.136 42.308 20.07 17.83 35.48 4.34
3468 4394 3.623060 GCTGTATGATGATTGGTCGTTGT 59.377 43.478 0.00 0.00 0.00 3.32
3489 4415 2.542178 TGTATGTGTTGTTGTGTCGAGC 59.458 45.455 0.00 0.00 0.00 5.03
3493 4419 5.478233 TTGAGTGTATGTGTTGTTGTGTC 57.522 39.130 0.00 0.00 0.00 3.67
3499 4425 2.143122 CGCCTTGAGTGTATGTGTTGT 58.857 47.619 0.00 0.00 0.00 3.32
3500 4426 1.135972 GCGCCTTGAGTGTATGTGTTG 60.136 52.381 0.00 0.00 0.00 3.33
3501 4427 1.156736 GCGCCTTGAGTGTATGTGTT 58.843 50.000 0.00 0.00 0.00 3.32
3502 4428 0.321671 AGCGCCTTGAGTGTATGTGT 59.678 50.000 2.29 0.00 0.00 3.72
3503 4429 1.002366 GAGCGCCTTGAGTGTATGTG 58.998 55.000 2.29 0.00 0.00 3.21
3504 4430 0.458543 CGAGCGCCTTGAGTGTATGT 60.459 55.000 2.29 0.00 0.00 2.29
3505 4431 0.179137 TCGAGCGCCTTGAGTGTATG 60.179 55.000 2.29 0.00 0.00 2.39
3506 4432 0.179134 GTCGAGCGCCTTGAGTGTAT 60.179 55.000 2.29 0.00 0.00 2.29
3507 4433 1.211969 GTCGAGCGCCTTGAGTGTA 59.788 57.895 2.29 0.00 0.00 2.90
3508 4434 2.049063 GTCGAGCGCCTTGAGTGT 60.049 61.111 2.29 0.00 0.00 3.55
3509 4435 2.049156 TGTCGAGCGCCTTGAGTG 60.049 61.111 2.29 0.00 0.00 3.51
3510 4436 2.049063 GTGTCGAGCGCCTTGAGT 60.049 61.111 2.29 0.00 0.00 3.41
3511 4437 2.811317 GGTGTCGAGCGCCTTGAG 60.811 66.667 2.29 0.00 44.20 3.02
3517 4443 4.059459 CGTTGTGGTGTCGAGCGC 62.059 66.667 0.00 0.00 0.00 5.92
3518 4444 4.059459 GCGTTGTGGTGTCGAGCG 62.059 66.667 0.00 0.00 0.00 5.03
3519 4445 2.964925 TGCGTTGTGGTGTCGAGC 60.965 61.111 0.00 0.00 0.00 5.03
3523 4449 1.061887 GTGTGTGCGTTGTGGTGTC 59.938 57.895 0.00 0.00 0.00 3.67
3547 4473 5.482163 TTCTTATCGCCCATGTATCATGA 57.518 39.130 10.75 0.00 0.00 3.07
3561 4487 6.858993 GCTCTTCTGTGTACCTATTCTTATCG 59.141 42.308 0.00 0.00 0.00 2.92
3570 4496 1.816835 CACGGCTCTTCTGTGTACCTA 59.183 52.381 0.00 0.00 45.01 3.08
3580 4506 2.866762 GGTTCATCATACACGGCTCTTC 59.133 50.000 0.00 0.00 0.00 2.87
3596 4522 1.853963 GTCCTAGAGCTCCTGGTTCA 58.146 55.000 10.93 0.00 0.00 3.18
3597 4523 0.741915 CGTCCTAGAGCTCCTGGTTC 59.258 60.000 10.93 9.55 0.00 3.62
3602 4528 2.517402 CGCCGTCCTAGAGCTCCT 60.517 66.667 10.93 0.10 0.00 3.69
3605 4531 4.824515 AGGCGCCGTCCTAGAGCT 62.825 66.667 23.20 0.00 33.95 4.09
3612 4538 2.358247 TTCTTGAAGGCGCCGTCC 60.358 61.111 34.54 21.64 0.00 4.79
3618 4544 3.791353 GTGTTGTTTTCTTCTTGAAGGCG 59.209 43.478 10.08 0.00 35.89 5.52
3620 4546 5.582689 AGGTGTTGTTTTCTTCTTGAAGG 57.417 39.130 10.08 0.00 35.89 3.46
3624 4550 6.200854 GGCATTTAGGTGTTGTTTTCTTCTTG 59.799 38.462 0.00 0.00 0.00 3.02
3661 4587 1.146263 GAAACCCCGATCGCTGGAT 59.854 57.895 23.67 12.54 34.96 3.41
3662 4588 2.582436 GAAACCCCGATCGCTGGA 59.418 61.111 23.67 0.00 0.00 3.86
3663 4589 2.513897 GGAAACCCCGATCGCTGG 60.514 66.667 10.32 14.66 0.00 4.85
3672 4598 0.252742 TCTCCCTCTGAGGAAACCCC 60.253 60.000 25.18 0.00 41.76 4.95
3674 4600 2.541466 TCTTCTCCCTCTGAGGAAACC 58.459 52.381 25.18 0.00 41.76 3.27
3676 4602 4.133526 TCTTCTTCTCCCTCTGAGGAAA 57.866 45.455 25.18 14.08 41.76 3.13
3681 4607 4.340617 GAGTCTTCTTCTTCTCCCTCTGA 58.659 47.826 0.00 0.00 0.00 3.27
3693 4620 2.153322 GTCGCCGCGAGTCTTCTTC 61.153 63.158 17.42 0.00 36.23 2.87
3707 4634 0.865769 TTTCTTCTTGAAGGCGTCGC 59.134 50.000 9.22 9.22 35.89 5.19
3708 4635 2.286833 TGTTTTCTTCTTGAAGGCGTCG 59.713 45.455 10.08 0.00 35.89 5.12
3712 4639 4.112634 GGTGTTGTTTTCTTCTTGAAGGC 58.887 43.478 10.08 1.05 35.89 4.35
3732 4659 2.046285 GCGGTGGCAGCATTTAGGT 61.046 57.895 17.80 0.00 39.62 3.08
3733 4660 2.774799 GGCGGTGGCAGCATTTAGG 61.775 63.158 17.80 0.00 42.47 2.69
3734 4661 2.774799 GGGCGGTGGCAGCATTTAG 61.775 63.158 17.80 0.59 42.47 1.85
3735 4662 2.753849 GGGCGGTGGCAGCATTTA 60.754 61.111 17.80 0.00 42.47 1.40
3753 4680 0.880718 GAAACCCCGATCGCTGGATC 60.881 60.000 23.67 17.45 44.63 3.36
3754 4681 1.146263 GAAACCCCGATCGCTGGAT 59.854 57.895 23.67 12.54 34.96 3.41
3755 4682 2.582436 GAAACCCCGATCGCTGGA 59.418 61.111 23.67 0.00 0.00 3.86
3756 4683 2.513897 GGAAACCCCGATCGCTGG 60.514 66.667 10.32 14.66 0.00 4.85
3757 4684 1.521681 GAGGAAACCCCGATCGCTG 60.522 63.158 10.32 5.00 40.87 5.18
3758 4685 1.961180 CTGAGGAAACCCCGATCGCT 61.961 60.000 10.32 0.00 40.87 4.93
3759 4686 1.521681 CTGAGGAAACCCCGATCGC 60.522 63.158 10.32 0.00 40.87 4.58
3760 4687 0.103208 CTCTGAGGAAACCCCGATCG 59.897 60.000 8.51 8.51 40.87 3.69
3761 4688 0.466124 CCTCTGAGGAAACCCCGATC 59.534 60.000 19.13 0.00 37.67 3.69
3762 4689 0.983378 CCCTCTGAGGAAACCCCGAT 60.983 60.000 25.18 0.00 37.67 4.18
3763 4690 1.612442 CCCTCTGAGGAAACCCCGA 60.612 63.158 25.18 0.00 37.67 5.14
3764 4691 1.612442 TCCCTCTGAGGAAACCCCG 60.612 63.158 25.18 6.42 37.67 5.73
3765 4692 0.252742 TCTCCCTCTGAGGAAACCCC 60.253 60.000 25.18 0.00 41.76 4.95
3766 4693 1.557371 CTTCTCCCTCTGAGGAAACCC 59.443 57.143 25.18 0.00 41.76 4.11
3767 4694 2.541466 TCTTCTCCCTCTGAGGAAACC 58.459 52.381 25.18 0.00 41.76 3.27
3768 4695 3.835395 TCTTCTTCTCCCTCTGAGGAAAC 59.165 47.826 25.18 0.00 41.76 2.78
3769 4696 4.133526 TCTTCTTCTCCCTCTGAGGAAA 57.866 45.455 25.18 14.08 41.76 3.13
3770 4697 3.835478 TCTTCTTCTCCCTCTGAGGAA 57.165 47.619 25.18 3.27 41.76 3.36
3771 4698 3.335183 TCTTCTTCTTCTCCCTCTGAGGA 59.665 47.826 25.18 10.09 41.76 3.71
3772 4699 3.701040 CTCTTCTTCTTCTCCCTCTGAGG 59.299 52.174 17.02 17.02 41.76 3.86
3773 4700 4.344104 ACTCTTCTTCTTCTCCCTCTGAG 58.656 47.826 0.00 0.00 42.90 3.35
3774 4701 4.396357 ACTCTTCTTCTTCTCCCTCTGA 57.604 45.455 0.00 0.00 0.00 3.27
3775 4702 4.819769 CAACTCTTCTTCTTCTCCCTCTG 58.180 47.826 0.00 0.00 0.00 3.35
3776 4703 3.260632 GCAACTCTTCTTCTTCTCCCTCT 59.739 47.826 0.00 0.00 0.00 3.69
3777 4704 3.595173 GCAACTCTTCTTCTTCTCCCTC 58.405 50.000 0.00 0.00 0.00 4.30
3778 4705 2.028567 CGCAACTCTTCTTCTTCTCCCT 60.029 50.000 0.00 0.00 0.00 4.20
3779 4706 2.342179 CGCAACTCTTCTTCTTCTCCC 58.658 52.381 0.00 0.00 0.00 4.30
3780 4707 2.342179 CCGCAACTCTTCTTCTTCTCC 58.658 52.381 0.00 0.00 0.00 3.71
3781 4708 1.729517 GCCGCAACTCTTCTTCTTCTC 59.270 52.381 0.00 0.00 0.00 2.87
3782 4709 1.802069 GCCGCAACTCTTCTTCTTCT 58.198 50.000 0.00 0.00 0.00 2.85
3783 4710 0.440371 CGCCGCAACTCTTCTTCTTC 59.560 55.000 0.00 0.00 0.00 2.87
3784 4711 0.033504 TCGCCGCAACTCTTCTTCTT 59.966 50.000 0.00 0.00 0.00 2.52
3785 4712 0.667792 GTCGCCGCAACTCTTCTTCT 60.668 55.000 0.00 0.00 0.00 2.85
3786 4713 1.782181 GTCGCCGCAACTCTTCTTC 59.218 57.895 0.00 0.00 0.00 2.87
3787 4714 2.022129 CGTCGCCGCAACTCTTCTT 61.022 57.895 0.00 0.00 0.00 2.52
3788 4715 2.430921 CGTCGCCGCAACTCTTCT 60.431 61.111 0.00 0.00 0.00 2.85
3807 4734 2.038033 TGGTGTCGTCCCCTTCTTAAAG 59.962 50.000 0.00 0.00 0.00 1.85
3808 4735 2.048601 TGGTGTCGTCCCCTTCTTAAA 58.951 47.619 0.00 0.00 0.00 1.52
3809 4736 1.719529 TGGTGTCGTCCCCTTCTTAA 58.280 50.000 0.00 0.00 0.00 1.85
3810 4737 1.946984 ATGGTGTCGTCCCCTTCTTA 58.053 50.000 0.00 0.00 0.00 2.10
3811 4738 1.831736 CTATGGTGTCGTCCCCTTCTT 59.168 52.381 0.00 0.00 0.00 2.52
3812 4739 1.486211 CTATGGTGTCGTCCCCTTCT 58.514 55.000 0.00 0.00 0.00 2.85
3813 4740 0.464452 CCTATGGTGTCGTCCCCTTC 59.536 60.000 0.00 0.00 0.00 3.46
3814 4741 1.623542 GCCTATGGTGTCGTCCCCTT 61.624 60.000 0.00 0.00 0.00 3.95
3815 4742 2.064581 GCCTATGGTGTCGTCCCCT 61.065 63.158 0.00 0.00 0.00 4.79
3816 4743 2.504519 GCCTATGGTGTCGTCCCC 59.495 66.667 0.00 0.00 0.00 4.81
3817 4744 2.106332 CGCCTATGGTGTCGTCCC 59.894 66.667 0.00 0.00 0.00 4.46
3818 4745 2.585247 GCGCCTATGGTGTCGTCC 60.585 66.667 0.00 0.00 35.34 4.79
3819 4746 2.585247 GGCGCCTATGGTGTCGTC 60.585 66.667 22.15 0.00 35.34 4.20
3820 4747 3.387091 TGGCGCCTATGGTGTCGT 61.387 61.111 29.70 0.00 41.20 4.34
3821 4748 2.890474 GTGGCGCCTATGGTGTCG 60.890 66.667 29.70 0.00 41.20 4.35
3822 4749 1.815421 CAGTGGCGCCTATGGTGTC 60.815 63.158 29.70 7.57 38.44 3.67
3823 4750 2.268920 CAGTGGCGCCTATGGTGT 59.731 61.111 29.70 0.62 35.34 4.16
3824 4751 3.204827 GCAGTGGCGCCTATGGTG 61.205 66.667 29.70 17.53 36.10 4.17
3835 4762 4.742201 CCAGGTCGACGGCAGTGG 62.742 72.222 9.92 3.50 0.00 4.00
3841 4768 2.279517 GCTATGCCAGGTCGACGG 60.280 66.667 9.92 7.32 0.00 4.79
3852 4779 3.026694 AGAAAACCCATTCTGGCTATGC 58.973 45.455 0.00 0.00 38.22 3.14
3853 4780 3.633986 GGAGAAAACCCATTCTGGCTATG 59.366 47.826 0.00 0.00 39.70 2.23
3854 4781 3.903467 GGAGAAAACCCATTCTGGCTAT 58.097 45.455 0.00 0.00 39.70 2.97
3855 4782 3.366052 GGAGAAAACCCATTCTGGCTA 57.634 47.619 0.00 0.00 39.70 3.93
3856 4783 2.222227 GGAGAAAACCCATTCTGGCT 57.778 50.000 0.00 0.00 39.70 4.75
3866 4793 2.675423 GGTGCCGGGGAGAAAACC 60.675 66.667 2.18 0.00 0.00 3.27
3867 4794 2.114411 TGGTGCCGGGGAGAAAAC 59.886 61.111 2.18 0.00 0.00 2.43
3868 4795 2.114411 GTGGTGCCGGGGAGAAAA 59.886 61.111 2.18 0.00 0.00 2.29
3869 4796 4.323477 CGTGGTGCCGGGGAGAAA 62.323 66.667 2.18 0.00 0.00 2.52
3879 4806 0.243365 TGAAAATGATGGCGTGGTGC 59.757 50.000 0.00 0.00 45.38 5.01
3880 4807 2.721274 TTGAAAATGATGGCGTGGTG 57.279 45.000 0.00 0.00 0.00 4.17
3881 4808 2.606795 CGTTTGAAAATGATGGCGTGGT 60.607 45.455 0.00 0.00 0.00 4.16
3882 4809 1.984990 CGTTTGAAAATGATGGCGTGG 59.015 47.619 0.00 0.00 0.00 4.94
3883 4810 1.984990 CCGTTTGAAAATGATGGCGTG 59.015 47.619 0.00 0.00 0.00 5.34
3884 4811 1.067915 CCCGTTTGAAAATGATGGCGT 60.068 47.619 0.00 0.00 0.00 5.68
3885 4812 1.627879 CCCGTTTGAAAATGATGGCG 58.372 50.000 0.00 0.00 0.00 5.69
3886 4813 1.275010 ACCCCGTTTGAAAATGATGGC 59.725 47.619 0.00 0.00 0.00 4.40
3887 4814 5.221165 GGTATACCCCGTTTGAAAATGATGG 60.221 44.000 11.17 0.56 0.00 3.51
3888 4815 5.358442 TGGTATACCCCGTTTGAAAATGATG 59.642 40.000 19.42 0.00 34.29 3.07
3889 4816 5.511363 TGGTATACCCCGTTTGAAAATGAT 58.489 37.500 19.42 0.00 34.29 2.45
3890 4817 4.919793 TGGTATACCCCGTTTGAAAATGA 58.080 39.130 19.42 0.00 34.29 2.57
3891 4818 5.646577 TTGGTATACCCCGTTTGAAAATG 57.353 39.130 19.42 0.00 34.29 2.32
3892 4819 4.158949 GCTTGGTATACCCCGTTTGAAAAT 59.841 41.667 19.42 0.00 34.29 1.82
3893 4820 3.506844 GCTTGGTATACCCCGTTTGAAAA 59.493 43.478 19.42 2.66 34.29 2.29
3894 4821 3.083293 GCTTGGTATACCCCGTTTGAAA 58.917 45.455 19.42 3.36 34.29 2.69
3895 4822 2.618559 GGCTTGGTATACCCCGTTTGAA 60.619 50.000 19.42 4.08 34.29 2.69
3896 4823 1.065272 GGCTTGGTATACCCCGTTTGA 60.065 52.381 19.42 0.00 34.29 2.69
3897 4824 1.340211 TGGCTTGGTATACCCCGTTTG 60.340 52.381 19.42 4.36 34.29 2.93
3898 4825 0.993470 TGGCTTGGTATACCCCGTTT 59.007 50.000 19.42 0.00 34.29 3.60
3899 4826 1.218844 ATGGCTTGGTATACCCCGTT 58.781 50.000 19.42 2.79 34.29 4.44
3900 4827 1.133915 CAATGGCTTGGTATACCCCGT 60.134 52.381 19.42 11.51 34.29 5.28
3901 4828 1.133915 ACAATGGCTTGGTATACCCCG 60.134 52.381 19.42 10.88 36.64 5.73
3902 4829 2.748209 ACAATGGCTTGGTATACCCC 57.252 50.000 19.42 13.39 36.64 4.95
3903 4830 3.430236 GCAAACAATGGCTTGGTATACCC 60.430 47.826 19.42 4.24 36.64 3.69
3904 4831 3.780902 GCAAACAATGGCTTGGTATACC 58.219 45.455 15.50 15.50 36.64 2.73
3915 4842 0.597118 CGTGGTGTGGCAAACAATGG 60.597 55.000 10.52 0.00 41.57 3.16
3916 4843 0.383590 TCGTGGTGTGGCAAACAATG 59.616 50.000 10.52 3.83 41.57 2.82
3917 4844 0.383949 GTCGTGGTGTGGCAAACAAT 59.616 50.000 10.52 0.00 41.57 2.71
3918 4845 1.658686 GGTCGTGGTGTGGCAAACAA 61.659 55.000 10.52 0.00 41.57 2.83
3919 4846 2.115911 GGTCGTGGTGTGGCAAACA 61.116 57.895 10.52 0.00 36.04 2.83
3920 4847 2.719354 GGTCGTGGTGTGGCAAAC 59.281 61.111 0.00 0.00 0.00 2.93
3921 4848 2.897846 CGGTCGTGGTGTGGCAAA 60.898 61.111 0.00 0.00 0.00 3.68
3939 4866 2.668212 ATGGTGGTTCGTGTGCGG 60.668 61.111 0.00 0.00 38.89 5.69
3940 4867 2.170260 GACATGGTGGTTCGTGTGCG 62.170 60.000 0.00 0.00 37.05 5.34
3941 4868 1.574428 GACATGGTGGTTCGTGTGC 59.426 57.895 0.00 0.00 37.05 4.57
3942 4869 1.859398 CGACATGGTGGTTCGTGTG 59.141 57.895 0.00 0.00 37.05 3.82
3943 4870 1.959226 GCGACATGGTGGTTCGTGT 60.959 57.895 0.00 0.00 39.35 4.49
3944 4871 2.677003 GGCGACATGGTGGTTCGTG 61.677 63.158 0.00 0.00 0.00 4.35
3945 4872 2.358247 GGCGACATGGTGGTTCGT 60.358 61.111 0.00 0.00 0.00 3.85
3946 4873 3.124921 GGGCGACATGGTGGTTCG 61.125 66.667 0.00 0.00 0.00 3.95
3947 4874 3.124921 CGGGCGACATGGTGGTTC 61.125 66.667 0.00 0.00 0.00 3.62
3962 4889 4.101790 GTTGCCATGGTCGTGCGG 62.102 66.667 14.67 0.00 0.00 5.69
3963 4890 4.101790 GGTTGCCATGGTCGTGCG 62.102 66.667 14.67 0.00 0.00 5.34
3964 4891 2.981560 CTGGTTGCCATGGTCGTGC 61.982 63.158 14.67 0.00 30.82 5.34
3965 4892 1.302431 TCTGGTTGCCATGGTCGTG 60.302 57.895 14.67 0.00 30.82 4.35
3966 4893 1.302511 GTCTGGTTGCCATGGTCGT 60.303 57.895 14.67 0.00 30.82 4.34
3967 4894 2.040544 GGTCTGGTTGCCATGGTCG 61.041 63.158 14.67 0.00 30.82 4.79
3968 4895 1.074775 TGGTCTGGTTGCCATGGTC 59.925 57.895 14.67 6.41 30.82 4.02
3969 4896 1.228552 GTGGTCTGGTTGCCATGGT 60.229 57.895 14.67 0.00 37.09 3.55
3970 4897 1.228521 TGTGGTCTGGTTGCCATGG 60.229 57.895 7.63 7.63 37.09 3.66
3971 4898 1.526575 GGTGTGGTCTGGTTGCCATG 61.527 60.000 0.00 0.00 37.09 3.66
3972 4899 1.228552 GGTGTGGTCTGGTTGCCAT 60.229 57.895 0.00 0.00 37.09 4.40
3973 4900 1.057275 TAGGTGTGGTCTGGTTGCCA 61.057 55.000 0.00 0.00 0.00 4.92
3974 4901 0.109723 TTAGGTGTGGTCTGGTTGCC 59.890 55.000 0.00 0.00 0.00 4.52
3975 4902 1.235724 GTTAGGTGTGGTCTGGTTGC 58.764 55.000 0.00 0.00 0.00 4.17
3976 4903 1.544759 GGGTTAGGTGTGGTCTGGTTG 60.545 57.143 0.00 0.00 0.00 3.77
3977 4904 0.769247 GGGTTAGGTGTGGTCTGGTT 59.231 55.000 0.00 0.00 0.00 3.67
3978 4905 1.131928 GGGGTTAGGTGTGGTCTGGT 61.132 60.000 0.00 0.00 0.00 4.00
3979 4906 1.683441 GGGGTTAGGTGTGGTCTGG 59.317 63.158 0.00 0.00 0.00 3.86
3980 4907 1.189524 TCGGGGTTAGGTGTGGTCTG 61.190 60.000 0.00 0.00 0.00 3.51
3981 4908 0.903454 CTCGGGGTTAGGTGTGGTCT 60.903 60.000 0.00 0.00 0.00 3.85
3982 4909 1.595357 CTCGGGGTTAGGTGTGGTC 59.405 63.158 0.00 0.00 0.00 4.02
3983 4910 2.590114 GCTCGGGGTTAGGTGTGGT 61.590 63.158 0.00 0.00 0.00 4.16
3984 4911 2.240162 GAGCTCGGGGTTAGGTGTGG 62.240 65.000 0.00 0.00 0.00 4.17
3985 4912 1.218316 GAGCTCGGGGTTAGGTGTG 59.782 63.158 0.00 0.00 0.00 3.82
3986 4913 1.988406 GGAGCTCGGGGTTAGGTGT 60.988 63.158 7.83 0.00 0.00 4.16
3987 4914 2.901042 GGAGCTCGGGGTTAGGTG 59.099 66.667 7.83 0.00 0.00 4.00
3988 4915 2.758737 CGGAGCTCGGGGTTAGGT 60.759 66.667 13.25 0.00 34.75 3.08
4001 4928 3.726517 CGTTGCTTGTGGGCGGAG 61.727 66.667 0.00 0.00 34.52 4.63
4007 4934 3.047280 TAGCCGCGTTGCTTGTGG 61.047 61.111 14.99 0.00 42.75 4.17
4008 4935 2.173382 GTAGCCGCGTTGCTTGTG 59.827 61.111 14.99 0.00 42.75 3.33
4009 4936 3.047877 GGTAGCCGCGTTGCTTGT 61.048 61.111 14.99 0.00 42.75 3.16
4010 4937 3.047280 TGGTAGCCGCGTTGCTTG 61.047 61.111 14.99 0.00 42.75 4.01
4011 4938 3.047877 GTGGTAGCCGCGTTGCTT 61.048 61.111 14.99 0.60 42.75 3.91
4014 4941 3.419759 GTGGTGGTAGCCGCGTTG 61.420 66.667 4.92 0.00 34.37 4.10
4018 4945 2.813908 CTTCGTGGTGGTAGCCGC 60.814 66.667 0.00 0.00 35.78 6.53
4019 4946 2.125673 CCTTCGTGGTGGTAGCCG 60.126 66.667 0.00 0.00 0.00 5.52
4020 4947 2.436115 GCCTTCGTGGTGGTAGCC 60.436 66.667 0.00 0.00 38.35 3.93
4021 4948 2.436115 GGCCTTCGTGGTGGTAGC 60.436 66.667 0.00 0.00 38.35 3.58
4022 4949 2.125673 CGGCCTTCGTGGTGGTAG 60.126 66.667 0.00 0.00 38.35 3.18
4023 4950 4.382320 GCGGCCTTCGTGGTGGTA 62.382 66.667 0.00 0.00 41.72 3.25
4041 4968 4.452733 GTCTTGGACTCCGGGGCG 62.453 72.222 0.00 0.00 0.00 6.13
4042 4969 4.097361 GGTCTTGGACTCCGGGGC 62.097 72.222 0.00 0.00 32.47 5.80
4043 4970 3.400054 GGGTCTTGGACTCCGGGG 61.400 72.222 0.00 0.00 32.47 5.73
4044 4971 3.400054 GGGGTCTTGGACTCCGGG 61.400 72.222 0.00 0.00 43.78 5.73
4048 4975 1.292541 GTGTCGGGGTCTTGGACTC 59.707 63.158 0.00 0.00 32.47 3.36
4049 4976 2.214920 GGTGTCGGGGTCTTGGACT 61.215 63.158 0.00 0.00 32.47 3.85
4050 4977 2.346365 GGTGTCGGGGTCTTGGAC 59.654 66.667 0.00 0.00 0.00 4.02
4051 4978 2.122769 TGGTGTCGGGGTCTTGGA 60.123 61.111 0.00 0.00 0.00 3.53
4052 4979 2.032071 GTGGTGTCGGGGTCTTGG 59.968 66.667 0.00 0.00 0.00 3.61
4053 4980 2.032071 GGTGGTGTCGGGGTCTTG 59.968 66.667 0.00 0.00 0.00 3.02
4054 4981 3.246880 GGGTGGTGTCGGGGTCTT 61.247 66.667 0.00 0.00 0.00 3.01
4060 4987 4.329545 CAGGTGGGGTGGTGTCGG 62.330 72.222 0.00 0.00 0.00 4.79
4061 4988 3.238497 TCAGGTGGGGTGGTGTCG 61.238 66.667 0.00 0.00 0.00 4.35
4062 4989 2.750350 CTCAGGTGGGGTGGTGTC 59.250 66.667 0.00 0.00 0.00 3.67
4063 4990 2.854032 CCTCAGGTGGGGTGGTGT 60.854 66.667 0.00 0.00 0.00 4.16
4064 4991 4.351054 GCCTCAGGTGGGGTGGTG 62.351 72.222 0.00 0.00 0.00 4.17
4069 4996 4.659172 TTTGCGCCTCAGGTGGGG 62.659 66.667 6.34 0.00 42.18 4.96
4070 4997 2.597217 TTTTGCGCCTCAGGTGGG 60.597 61.111 6.34 0.00 33.18 4.61
4071 4998 0.605319 TAGTTTTGCGCCTCAGGTGG 60.605 55.000 6.34 0.00 33.18 4.61
4072 4999 0.517316 GTAGTTTTGCGCCTCAGGTG 59.483 55.000 4.18 0.00 36.10 4.00
4073 5000 2.928416 GTAGTTTTGCGCCTCAGGT 58.072 52.632 4.18 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.