Multiple sequence alignment - TraesCS6D01G045900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G045900 chr6D 100.000 7015 0 0 1 7015 20727764 20720750 0.000000e+00 12955.0
1 TraesCS6D01G045900 chr6D 86.905 84 7 4 2221 2302 20725380 20725299 2.690000e-14 91.6
2 TraesCS6D01G045900 chr6D 86.905 84 7 4 2386 2466 20725545 20725463 2.690000e-14 91.6
3 TraesCS6D01G045900 chr6A 92.390 2431 142 20 3607 6007 20827239 20824822 0.000000e+00 3424.0
4 TraesCS6D01G045900 chr6A 93.420 1231 66 8 1238 2466 20863826 20862609 0.000000e+00 1810.0
5 TraesCS6D01G045900 chr6A 91.379 580 42 5 5626 6201 20835155 20834580 0.000000e+00 787.0
6 TraesCS6D01G045900 chr6A 90.345 580 48 5 5626 6201 20778761 20778186 0.000000e+00 754.0
7 TraesCS6D01G045900 chr6A 89.564 527 43 6 6234 6750 20778185 20777661 0.000000e+00 658.0
8 TraesCS6D01G045900 chr6A 89.374 527 43 8 6234 6750 20834579 20834056 0.000000e+00 651.0
9 TraesCS6D01G045900 chr6A 92.487 386 21 3 861 1243 20864234 20863854 4.780000e-151 545.0
10 TraesCS6D01G045900 chr6A 86.576 514 40 14 2630 3127 20828925 20828425 2.230000e-149 540.0
11 TraesCS6D01G045900 chr6A 86.576 514 40 14 2630 3127 20859840 20859340 2.230000e-149 540.0
12 TraesCS6D01G045900 chr6A 86.286 525 31 17 6023 6508 20824418 20823896 3.730000e-147 532.0
13 TraesCS6D01G045900 chr6A 75.629 874 182 18 1238 2093 35110740 35111600 8.470000e-109 405.0
14 TraesCS6D01G045900 chr6A 90.637 267 16 4 6749 7015 20777631 20777374 5.210000e-91 346.0
15 TraesCS6D01G045900 chr6A 90.602 266 16 4 6750 7015 20823755 20823499 1.870000e-90 344.0
16 TraesCS6D01G045900 chr6A 89.888 267 18 4 6749 7015 20834022 20833765 1.130000e-87 335.0
17 TraesCS6D01G045900 chr6A 94.681 188 6 2 3428 3614 20827450 20827266 8.900000e-74 289.0
18 TraesCS6D01G045900 chr6A 92.308 169 8 3 2244 2412 20862663 20862500 1.180000e-57 235.0
19 TraesCS6D01G045900 chr6A 89.431 123 7 3 3281 3397 20827558 20827436 4.380000e-32 150.0
20 TraesCS6D01G045900 chr6A 95.062 81 4 0 5781 5861 20748637 20748557 2.050000e-25 128.0
21 TraesCS6D01G045900 chr6A 85.185 108 9 3 3143 3250 20827659 20827559 3.460000e-18 104.0
22 TraesCS6D01G045900 chr6A 89.024 82 8 1 2386 2466 20862850 20862769 4.480000e-17 100.0
23 TraesCS6D01G045900 chr6B 89.979 1866 132 21 4416 6257 35592661 35590827 0.000000e+00 2359.0
24 TraesCS6D01G045900 chr6B 93.134 1238 49 12 1238 2464 35596294 35595082 0.000000e+00 1783.0
25 TraesCS6D01G045900 chr6B 84.764 932 59 33 3126 4028 35593602 35592725 0.000000e+00 857.0
26 TraesCS6D01G045900 chr6B 94.154 325 15 1 919 1243 35596642 35596322 6.320000e-135 492.0
27 TraesCS6D01G045900 chr6B 92.174 230 11 6 2244 2466 35595145 35594916 1.140000e-82 318.0
28 TraesCS6D01G045900 chr6B 89.804 255 16 5 6744 6998 39014366 39014122 1.140000e-82 318.0
29 TraesCS6D01G045900 chr6B 88.561 271 17 6 6749 7015 35590267 35590007 4.080000e-82 316.0
30 TraesCS6D01G045900 chr6B 92.262 168 11 1 2469 2636 35594513 35594348 3.270000e-58 237.0
31 TraesCS6D01G045900 chr6B 92.262 168 12 1 2244 2411 35594973 35594807 3.270000e-58 237.0
32 TraesCS6D01G045900 chr6B 91.489 94 7 1 3035 3127 35594349 35594256 2.050000e-25 128.0
33 TraesCS6D01G045900 chr6B 93.182 44 3 0 6307 6350 34056261 34056304 1.630000e-06 65.8
34 TraesCS6D01G045900 chr6B 97.222 36 1 0 2431 2466 35595286 35595251 2.110000e-05 62.1
35 TraesCS6D01G045900 chr7D 98.537 752 11 0 1 752 185742851 185743602 0.000000e+00 1328.0
36 TraesCS6D01G045900 chr7D 98.158 760 12 2 1 758 524890199 524890958 0.000000e+00 1325.0
37 TraesCS6D01G045900 chr7D 98.406 753 11 1 1 752 554555470 554556222 0.000000e+00 1323.0
38 TraesCS6D01G045900 chr7D 98.404 752 11 1 1 752 29101311 29102061 0.000000e+00 1321.0
39 TraesCS6D01G045900 chr4D 98.537 752 11 0 1 752 413680883 413680132 0.000000e+00 1328.0
40 TraesCS6D01G045900 chr2D 98.537 752 11 0 1 752 639996332 639997083 0.000000e+00 1328.0
41 TraesCS6D01G045900 chr1D 98.404 752 12 0 1 752 79058698 79057947 0.000000e+00 1323.0
42 TraesCS6D01G045900 chr3D 98.278 755 11 1 1 753 558549615 558550369 0.000000e+00 1321.0
43 TraesCS6D01G045900 chr5D 97.898 761 14 2 1 759 563412931 563412171 0.000000e+00 1315.0
44 TraesCS6D01G045900 chrUn 93.214 280 11 3 3607 3879 333738844 333739122 8.470000e-109 405.0
45 TraesCS6D01G045900 chrUn 93.214 280 11 3 3607 3879 365783388 365783666 8.470000e-109 405.0
46 TraesCS6D01G045900 chrUn 93.780 209 13 0 5420 5628 333739325 333739533 1.470000e-81 315.0
47 TraesCS6D01G045900 chrUn 93.780 209 13 0 5420 5628 365783869 365784077 1.470000e-81 315.0
48 TraesCS6D01G045900 chrUn 94.681 188 6 2 3428 3614 333738633 333738817 8.900000e-74 289.0
49 TraesCS6D01G045900 chrUn 94.681 188 6 2 3428 3614 365783177 365783361 8.900000e-74 289.0
50 TraesCS6D01G045900 chrUn 91.192 193 14 2 5127 5319 333739121 333739310 6.980000e-65 259.0
51 TraesCS6D01G045900 chrUn 91.192 193 14 2 5127 5319 365783665 365783854 6.980000e-65 259.0
52 TraesCS6D01G045900 chrUn 89.431 123 7 3 3281 3397 333738525 333738647 4.380000e-32 150.0
53 TraesCS6D01G045900 chrUn 89.431 123 7 3 3281 3397 365783069 365783191 4.380000e-32 150.0
54 TraesCS6D01G045900 chrUn 85.185 108 9 3 3143 3250 333738424 333738524 3.460000e-18 104.0
55 TraesCS6D01G045900 chrUn 85.185 108 9 3 3143 3250 365782968 365783068 3.460000e-18 104.0
56 TraesCS6D01G045900 chr5B 90.800 250 13 5 6749 6998 506238879 506238640 6.790000e-85 326.0
57 TraesCS6D01G045900 chr2B 90.196 255 14 6 6744 6998 222487190 222487433 8.780000e-84 322.0
58 TraesCS6D01G045900 chr2B 86.179 123 7 3 6876 6998 292869051 292868939 2.660000e-24 124.0
59 TraesCS6D01G045900 chr7B 90.400 250 14 5 6749 6998 743587113 743586874 3.160000e-83 320.0
60 TraesCS6D01G045900 chr1B 89.600 250 16 5 6749 6998 121892002 121891763 6.830000e-80 309.0
61 TraesCS6D01G045900 chr1B 88.755 249 17 7 6751 6998 14895356 14895594 1.910000e-75 294.0
62 TraesCS6D01G045900 chr1B 87.600 250 21 3 6749 6998 31371573 31371812 1.490000e-71 281.0
63 TraesCS6D01G045900 chr3B 88.000 250 20 5 6749 6998 767808887 767809126 3.200000e-73 287.0
64 TraesCS6D01G045900 chr3B 86.400 250 14 4 6749 6998 185513224 185512995 9.030000e-64 255.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G045900 chr6D 20720750 20727764 7014 True 4379.400000 12955 91.270000 1 7015 3 chr6D.!!$R1 7014
1 TraesCS6D01G045900 chr6A 20823499 20828925 5426 True 769.000000 3424 89.307286 2630 7015 7 chr6A.!!$R3 4385
2 TraesCS6D01G045900 chr6A 20859340 20864234 4894 True 646.000000 1810 90.763000 861 3127 5 chr6A.!!$R5 2266
3 TraesCS6D01G045900 chr6A 20833765 20835155 1390 True 591.000000 787 90.213667 5626 7015 3 chr6A.!!$R4 1389
4 TraesCS6D01G045900 chr6A 20777374 20778761 1387 True 586.000000 754 90.182000 5626 7015 3 chr6A.!!$R2 1389
5 TraesCS6D01G045900 chr6A 35110740 35111600 860 False 405.000000 405 75.629000 1238 2093 1 chr6A.!!$F1 855
6 TraesCS6D01G045900 chr6B 35590007 35596642 6635 True 678.910000 2359 91.600100 919 7015 10 chr6B.!!$R2 6096
7 TraesCS6D01G045900 chr7D 185742851 185743602 751 False 1328.000000 1328 98.537000 1 752 1 chr7D.!!$F2 751
8 TraesCS6D01G045900 chr7D 524890199 524890958 759 False 1325.000000 1325 98.158000 1 758 1 chr7D.!!$F3 757
9 TraesCS6D01G045900 chr7D 554555470 554556222 752 False 1323.000000 1323 98.406000 1 752 1 chr7D.!!$F4 751
10 TraesCS6D01G045900 chr7D 29101311 29102061 750 False 1321.000000 1321 98.404000 1 752 1 chr7D.!!$F1 751
11 TraesCS6D01G045900 chr4D 413680132 413680883 751 True 1328.000000 1328 98.537000 1 752 1 chr4D.!!$R1 751
12 TraesCS6D01G045900 chr2D 639996332 639997083 751 False 1328.000000 1328 98.537000 1 752 1 chr2D.!!$F1 751
13 TraesCS6D01G045900 chr1D 79057947 79058698 751 True 1323.000000 1323 98.404000 1 752 1 chr1D.!!$R1 751
14 TraesCS6D01G045900 chr3D 558549615 558550369 754 False 1321.000000 1321 98.278000 1 753 1 chr3D.!!$F1 752
15 TraesCS6D01G045900 chr5D 563412171 563412931 760 True 1315.000000 1315 97.898000 1 759 1 chr5D.!!$R1 758
16 TraesCS6D01G045900 chrUn 333738424 333739533 1109 False 253.666667 405 91.247167 3143 5628 6 chrUn.!!$F1 2485
17 TraesCS6D01G045900 chrUn 365782968 365784077 1109 False 253.666667 405 91.247167 3143 5628 6 chrUn.!!$F2 2485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
946 953 0.654160 CTAGCGTACGTCCACGATGA 59.346 55.0 17.90 0.00 44.69 2.92 F
2612 3348 0.180642 TGTTGTCTTTACCGGTGGCA 59.819 50.0 19.93 5.25 0.00 4.92 F
2941 5791 0.394488 TTTTGTGTGGAGGGCGTTGA 60.394 50.0 0.00 0.00 0.00 3.18 F
2942 5792 0.817634 TTTGTGTGGAGGGCGTTGAG 60.818 55.0 0.00 0.00 0.00 3.02 F
4647 8359 0.374758 CGAGCAATACAAGCACGCAT 59.625 50.0 0.00 0.00 39.02 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2664 5502 0.179129 GCGCTGCCACAATAGCATTT 60.179 50.000 0.0 0.0 40.04 2.32 R
3809 7478 0.033504 AGGTAGTCCTGCACGTTGTG 59.966 55.000 0.0 0.0 43.33 3.33 R
4040 7725 0.615544 ATTGGGGGTTGCTGTGATGG 60.616 55.000 0.0 0.0 0.00 3.51 R
4893 8605 1.065418 GGCTACCTGTTGCACCTATGT 60.065 52.381 6.1 0.0 33.06 2.29 R
6515 10741 0.036388 CAGGGTGCTTTCGGCTCTTA 60.036 55.000 0.0 0.0 42.39 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.380320 TCGTATGCGAGGAATTCAAGAGA 59.620 43.478 7.93 0.00 42.81 3.10
329 330 8.819845 TGTCTACTCCTCTCCATACGTATATAA 58.180 37.037 7.96 0.00 0.00 0.98
684 688 3.873361 GGGCATTAGTAACGACCCTTTAC 59.127 47.826 8.75 0.00 34.34 2.01
686 690 5.181009 GGCATTAGTAACGACCCTTTACTT 58.819 41.667 1.31 0.00 39.82 2.24
736 740 0.702316 ATGAACCGGGGTAAAAGCCT 59.298 50.000 6.32 0.00 35.71 4.58
746 750 4.627984 CGGGGTAAAAGCCTCTTTTCCTAT 60.628 45.833 7.70 0.00 35.71 2.57
758 762 8.603304 AGCCTCTTTTCCTATTAGTGTTCTTTA 58.397 33.333 0.00 0.00 0.00 1.85
759 763 9.397280 GCCTCTTTTCCTATTAGTGTTCTTTAT 57.603 33.333 0.00 0.00 0.00 1.40
774 778 9.751542 AGTGTTCTTTATTCCATAGACGATTAG 57.248 33.333 0.00 0.00 0.00 1.73
775 779 9.745880 GTGTTCTTTATTCCATAGACGATTAGA 57.254 33.333 0.00 0.00 0.00 2.10
794 798 8.459521 GATTAGAATCGGTGAAGATCTACATG 57.540 38.462 0.00 0.00 0.00 3.21
795 799 7.582667 TTAGAATCGGTGAAGATCTACATGA 57.417 36.000 0.00 0.00 0.00 3.07
796 800 6.471233 AGAATCGGTGAAGATCTACATGAA 57.529 37.500 0.00 0.00 0.00 2.57
797 801 6.878317 AGAATCGGTGAAGATCTACATGAAA 58.122 36.000 0.00 0.00 0.00 2.69
798 802 7.504403 AGAATCGGTGAAGATCTACATGAAAT 58.496 34.615 0.00 0.00 0.00 2.17
799 803 8.642432 AGAATCGGTGAAGATCTACATGAAATA 58.358 33.333 0.00 0.00 0.00 1.40
800 804 9.429359 GAATCGGTGAAGATCTACATGAAATAT 57.571 33.333 0.00 0.00 0.00 1.28
802 806 9.862371 ATCGGTGAAGATCTACATGAAATATAC 57.138 33.333 0.00 0.00 0.00 1.47
803 807 8.856103 TCGGTGAAGATCTACATGAAATATACA 58.144 33.333 0.00 0.00 0.00 2.29
804 808 9.476202 CGGTGAAGATCTACATGAAATATACAA 57.524 33.333 0.00 0.00 0.00 2.41
827 831 9.090692 ACAAGATTTAATATGCACAAGATTTGC 57.909 29.630 0.00 0.00 40.63 3.68
836 840 5.199024 TGCACAAGATTTGCACAATTACT 57.801 34.783 0.00 0.00 45.06 2.24
837 841 6.324561 TGCACAAGATTTGCACAATTACTA 57.675 33.333 0.00 0.00 45.06 1.82
838 842 6.148948 TGCACAAGATTTGCACAATTACTAC 58.851 36.000 0.00 0.00 45.06 2.73
839 843 5.572896 GCACAAGATTTGCACAATTACTACC 59.427 40.000 0.00 0.00 39.93 3.18
840 844 6.570378 GCACAAGATTTGCACAATTACTACCT 60.570 38.462 0.00 0.00 39.93 3.08
841 845 6.803320 CACAAGATTTGCACAATTACTACCTG 59.197 38.462 0.00 0.00 0.00 4.00
842 846 6.714810 ACAAGATTTGCACAATTACTACCTGA 59.285 34.615 0.00 0.00 0.00 3.86
843 847 7.394359 ACAAGATTTGCACAATTACTACCTGAT 59.606 33.333 0.00 0.00 0.00 2.90
844 848 7.944729 AGATTTGCACAATTACTACCTGATT 57.055 32.000 0.00 0.00 0.00 2.57
845 849 7.989826 AGATTTGCACAATTACTACCTGATTC 58.010 34.615 0.00 0.00 0.00 2.52
846 850 7.831193 AGATTTGCACAATTACTACCTGATTCT 59.169 33.333 0.00 0.00 0.00 2.40
847 851 7.759489 TTTGCACAATTACTACCTGATTCTT 57.241 32.000 0.00 0.00 0.00 2.52
848 852 7.759489 TTGCACAATTACTACCTGATTCTTT 57.241 32.000 0.00 0.00 0.00 2.52
849 853 7.759489 TGCACAATTACTACCTGATTCTTTT 57.241 32.000 0.00 0.00 0.00 2.27
850 854 8.177119 TGCACAATTACTACCTGATTCTTTTT 57.823 30.769 0.00 0.00 0.00 1.94
870 874 3.706600 TTTGCGGGTGAATTACTACCT 57.293 42.857 6.11 0.00 37.15 3.08
876 880 4.443034 GCGGGTGAATTACTACCTGATTCT 60.443 45.833 15.45 0.00 44.44 2.40
890 894 1.338960 TGATTCTCCATGCAGCACGAA 60.339 47.619 0.00 0.00 0.00 3.85
898 902 2.409378 CCATGCAGCACGAAATTTTCAC 59.591 45.455 0.00 0.00 0.00 3.18
946 953 0.654160 CTAGCGTACGTCCACGATGA 59.346 55.000 17.90 0.00 44.69 2.92
955 962 1.933853 CGTCCACGATGAGAATTTCCC 59.066 52.381 0.00 0.00 43.02 3.97
977 984 4.466370 CCATATAAGGAGGTCCATCGCTAA 59.534 45.833 0.00 0.00 38.89 3.09
994 1001 3.539604 GCTAAGTACCTAGGACACTCGA 58.460 50.000 17.98 8.79 0.00 4.04
1001 1008 4.031636 ACCTAGGACACTCGAAGTAACT 57.968 45.455 17.98 0.00 0.00 2.24
1131 1138 0.613777 GTCGGAGGATTCCTTGTGGT 59.386 55.000 6.68 0.00 41.67 4.16
1212 1219 1.262166 GCGCTTCAACGTGTTCAAGC 61.262 55.000 10.81 10.81 38.31 4.01
1252 1292 0.602905 AAGTTCAACCTCTTCGGCGG 60.603 55.000 7.21 0.00 35.61 6.13
1297 1337 1.226686 GCATATGGTCGCTGCTCCAG 61.227 60.000 15.96 6.77 37.14 3.86
1510 1565 2.297895 CCATCAGGACCCGGAACCA 61.298 63.158 0.73 0.00 36.89 3.67
1608 1663 7.393234 AGTTAGCCTTCAAGTACATAATGCAAA 59.607 33.333 0.00 0.00 0.00 3.68
1610 1665 5.102313 GCCTTCAAGTACATAATGCAAACC 58.898 41.667 0.00 0.00 0.00 3.27
1730 1785 1.599518 CTACAAACAGGTGGCGCCA 60.600 57.895 29.03 29.03 40.61 5.69
1737 1792 1.675310 CAGGTGGCGCCAAATGAGA 60.675 57.895 34.66 2.53 40.61 3.27
1740 1795 1.031571 GGTGGCGCCAAATGAGATGA 61.032 55.000 34.66 0.00 37.17 2.92
1839 1894 3.692406 GAGGCGTCTTCGTGGGGT 61.692 66.667 0.00 0.00 39.49 4.95
1941 1997 9.104965 CCATAAATACTGGATCGTGAAAAACTA 57.895 33.333 0.00 0.00 35.70 2.24
1943 1999 7.611213 AAATACTGGATCGTGAAAAACTAGG 57.389 36.000 0.00 0.00 0.00 3.02
1946 2002 2.026636 TGGATCGTGAAAAACTAGGGGG 60.027 50.000 0.00 0.00 0.00 5.40
1982 2038 1.092348 GGTGAAAACGGCTACATCCC 58.908 55.000 0.00 0.00 0.00 3.85
2027 2083 2.734755 CCCAAGGAAGGCATATGTGA 57.265 50.000 4.29 0.00 0.00 3.58
2036 2092 5.278577 GGAAGGCATATGTGACATCCTCAC 61.279 50.000 11.98 1.53 45.75 3.51
2344 2402 7.772332 ATTAACGTTGTCTCTATCATCCAAC 57.228 36.000 11.99 0.00 33.74 3.77
2526 3262 1.486211 ATTAGTAGTGGCTGGCGACT 58.514 50.000 14.03 14.03 38.50 4.18
2566 3302 3.418684 AAGTAAGGTACAAGTGGCAGG 57.581 47.619 0.00 0.00 0.00 4.85
2584 3320 2.954684 GCAGATCCGTCCACCCACA 61.955 63.158 0.00 0.00 0.00 4.17
2585 3321 1.079127 CAGATCCGTCCACCCACAC 60.079 63.158 0.00 0.00 0.00 3.82
2587 3323 2.528127 ATCCGTCCACCCACACCA 60.528 61.111 0.00 0.00 0.00 4.17
2588 3324 1.910580 GATCCGTCCACCCACACCAT 61.911 60.000 0.00 0.00 0.00 3.55
2612 3348 0.180642 TGTTGTCTTTACCGGTGGCA 59.819 50.000 19.93 5.25 0.00 4.92
2641 5479 1.152963 GATGCCCGCCACTGGTAAT 60.153 57.895 0.00 0.00 0.00 1.89
2738 5588 4.270392 TGCACATGCATTGCAAGC 57.730 50.000 24.65 18.93 46.90 4.01
2749 5599 4.991472 TGCATTGCAAGCGTTCATATAAA 58.009 34.783 9.33 0.00 34.76 1.40
2763 5613 7.484641 GCGTTCATATAAAGATTGAAAGTGCAA 59.515 33.333 0.00 0.00 33.32 4.08
2789 5639 4.219264 TGCATCACACTACATTGATGGA 57.781 40.909 12.27 7.53 46.26 3.41
2792 5642 5.297527 TGCATCACACTACATTGATGGAATC 59.702 40.000 12.27 0.00 44.62 2.52
2809 5659 6.479972 TGGAATCCATCGTTACATCTTACT 57.520 37.500 0.00 0.00 0.00 2.24
2810 5660 7.591421 TGGAATCCATCGTTACATCTTACTA 57.409 36.000 0.00 0.00 0.00 1.82
2822 5672 8.239314 CGTTACATCTTACTAAGACTACCAACA 58.761 37.037 0.33 0.00 41.01 3.33
2823 5673 9.918630 GTTACATCTTACTAAGACTACCAACAA 57.081 33.333 0.33 0.00 41.01 2.83
2837 5687 2.091333 ACCAACAAGAGGACCAACCAAT 60.091 45.455 0.00 0.00 42.04 3.16
2841 5691 2.091885 ACAAGAGGACCAACCAATGTGT 60.092 45.455 0.00 0.00 42.04 3.72
2847 5697 1.172180 ACCAACCAATGTGTCGCCTG 61.172 55.000 0.00 0.00 0.00 4.85
2853 5703 2.942796 AATGTGTCGCCTGCTCCGA 61.943 57.895 0.00 0.00 0.00 4.55
2880 5730 1.141858 AGCTCTGCCCTACCAAATAGC 59.858 52.381 0.00 0.00 0.00 2.97
2881 5731 1.141858 GCTCTGCCCTACCAAATAGCT 59.858 52.381 0.00 0.00 0.00 3.32
2886 5736 2.298610 GCCCTACCAAATAGCTCAACC 58.701 52.381 0.00 0.00 0.00 3.77
2890 5740 3.694566 CCTACCAAATAGCTCAACCAACC 59.305 47.826 0.00 0.00 0.00 3.77
2893 5743 3.157087 CCAAATAGCTCAACCAACCACT 58.843 45.455 0.00 0.00 0.00 4.00
2906 5756 6.493115 TCAACCAACCACTTCATGATAACAAT 59.507 34.615 0.00 0.00 0.00 2.71
2911 5761 7.754924 CCAACCACTTCATGATAACAATAACAC 59.245 37.037 0.00 0.00 0.00 3.32
2913 5763 6.377146 ACCACTTCATGATAACAATAACACCC 59.623 38.462 0.00 0.00 0.00 4.61
2941 5791 0.394488 TTTTGTGTGGAGGGCGTTGA 60.394 50.000 0.00 0.00 0.00 3.18
2942 5792 0.817634 TTTGTGTGGAGGGCGTTGAG 60.818 55.000 0.00 0.00 0.00 3.02
2962 5812 3.269520 GGATTTCGCCGGAGACTAC 57.730 57.895 7.66 1.66 0.00 2.73
2972 5822 1.516423 GGAGACTACGGTTGGAGGC 59.484 63.158 0.00 0.00 0.00 4.70
2976 5826 1.870055 GACTACGGTTGGAGGCGTCA 61.870 60.000 8.91 0.00 0.00 4.35
3201 6816 3.707102 GAGGAGCACTCAGTTACCCTAAT 59.293 47.826 0.00 0.00 45.85 1.73
3202 6817 4.104831 AGGAGCACTCAGTTACCCTAATT 58.895 43.478 0.00 0.00 0.00 1.40
3267 6890 7.834068 AAAAAGAAAAAGAAAAGAGGAGCAC 57.166 32.000 0.00 0.00 0.00 4.40
3268 6891 6.782082 AAAGAAAAAGAAAAGAGGAGCACT 57.218 33.333 0.00 0.00 0.00 4.40
3269 6892 6.384258 AAGAAAAAGAAAAGAGGAGCACTC 57.616 37.500 0.53 0.53 46.98 3.51
3303 6926 0.867753 GCTGACATCCGAGCTGTACG 60.868 60.000 0.00 0.00 32.12 3.67
3343 6966 2.358737 CGACTCGGCTTTGGGCTT 60.359 61.111 0.00 0.00 41.46 4.35
3344 6967 2.391389 CGACTCGGCTTTGGGCTTC 61.391 63.158 0.00 0.00 41.46 3.86
3345 6968 2.034221 ACTCGGCTTTGGGCTTCC 59.966 61.111 0.00 0.00 41.46 3.46
3348 6971 2.190488 CTCGGCTTTGGGCTTCCTCT 62.190 60.000 0.00 0.00 41.46 3.69
3386 7015 5.469479 CCCATAAATCACAAACAACTCCAC 58.531 41.667 0.00 0.00 0.00 4.02
3418 7047 0.890996 CCTTCCCTGCAACTCACCAC 60.891 60.000 0.00 0.00 0.00 4.16
3423 7052 1.021390 CCTGCAACTCACCACGATCC 61.021 60.000 0.00 0.00 0.00 3.36
3450 7079 1.228124 CCGCTTTCCCAACTCACCA 60.228 57.895 0.00 0.00 0.00 4.17
3451 7080 1.515521 CCGCTTTCCCAACTCACCAC 61.516 60.000 0.00 0.00 0.00 4.16
3452 7081 1.841663 CGCTTTCCCAACTCACCACG 61.842 60.000 0.00 0.00 0.00 4.94
3502 7131 2.124570 CTCCATGGCGGAAGGTGG 60.125 66.667 6.96 0.00 45.75 4.61
3631 7293 6.368516 GCTCATGCTTCTCCAAGATATTAGTC 59.631 42.308 0.00 0.00 36.03 2.59
3635 7297 5.359860 TGCTTCTCCAAGATATTAGTCGACA 59.640 40.000 19.50 0.00 0.00 4.35
3640 7302 6.039493 TCTCCAAGATATTAGTCGACAACCTC 59.961 42.308 19.50 7.61 0.00 3.85
3649 7311 2.159142 AGTCGACAACCTCGTTTTCTGT 60.159 45.455 19.50 0.00 43.45 3.41
3657 7319 3.804036 ACCTCGTTTTCTGTTGTGATCA 58.196 40.909 0.00 0.00 0.00 2.92
3660 7322 4.988540 CCTCGTTTTCTGTTGTGATCACTA 59.011 41.667 25.55 16.43 0.00 2.74
3661 7323 5.465390 CCTCGTTTTCTGTTGTGATCACTAA 59.535 40.000 25.55 15.30 0.00 2.24
3662 7324 6.147821 CCTCGTTTTCTGTTGTGATCACTAAT 59.852 38.462 25.55 0.00 0.00 1.73
3722 7391 6.721571 TGGTTCACTTCAGAACGAATAATC 57.278 37.500 0.00 0.00 46.81 1.75
3754 7423 2.363683 CAAGTCCAAGGGAATCAGCTC 58.636 52.381 0.00 0.00 31.38 4.09
3809 7478 0.951040 CAAGGTGTTCAGCGACTCCC 60.951 60.000 0.00 0.00 34.50 4.30
4040 7725 6.758149 CAAAACATGCAGCTCAATCATAAAC 58.242 36.000 0.00 0.00 0.00 2.01
4043 7728 4.647853 ACATGCAGCTCAATCATAAACCAT 59.352 37.500 0.00 0.00 0.00 3.55
4048 7733 5.732528 GCAGCTCAATCATAAACCATCACAG 60.733 44.000 0.00 0.00 0.00 3.66
4088 7773 2.034687 CCCAGCTCCACCCTTGTG 59.965 66.667 0.00 0.00 42.39 3.33
4109 7794 2.351244 CCTACCGTGGCAGCTCAGA 61.351 63.158 0.00 0.00 0.00 3.27
4296 7981 3.006110 ACAGATCAAGTGCAAAACATGGG 59.994 43.478 0.00 0.00 0.00 4.00
4462 8171 1.608025 CGGCAGAGTTACCAAGCTCAA 60.608 52.381 0.00 0.00 34.39 3.02
4647 8359 0.374758 CGAGCAATACAAGCACGCAT 59.625 50.000 0.00 0.00 39.02 4.73
4810 8522 4.022068 GCCATGAAGGATCAGTTTGACAAA 60.022 41.667 0.00 0.00 39.39 2.83
4818 8530 4.520492 GGATCAGTTTGACAAACACCAGAT 59.480 41.667 28.07 23.04 43.79 2.90
4820 8532 6.348540 GGATCAGTTTGACAAACACCAGATAC 60.349 42.308 28.07 21.01 43.79 2.24
4826 8538 4.180817 TGACAAACACCAGATACGCATAG 58.819 43.478 0.00 0.00 0.00 2.23
4851 8563 3.440173 CGTATTCTGCATTTTCACAGGGT 59.560 43.478 0.00 0.00 34.57 4.34
4897 8609 4.039973 CCTCCTCGGGCTGTAAATAACATA 59.960 45.833 0.00 0.00 37.50 2.29
4908 8620 6.677920 GCTGTAAATAACATAGGTGCAACAGG 60.678 42.308 3.64 0.00 36.36 4.00
4981 8693 0.237498 CTTCAGAAAACGTTCCGGCC 59.763 55.000 0.00 0.00 33.92 6.13
4989 8701 2.030562 CGTTCCGGCCACAAGTCT 59.969 61.111 2.24 0.00 0.00 3.24
5018 8730 0.654683 GCAGCAAGAGAATAGCCACG 59.345 55.000 0.00 0.00 0.00 4.94
5021 8733 0.924090 GCAAGAGAATAGCCACGACG 59.076 55.000 0.00 0.00 0.00 5.12
5023 8735 2.479049 GCAAGAGAATAGCCACGACGTA 60.479 50.000 0.00 0.00 0.00 3.57
5025 8737 1.334243 AGAGAATAGCCACGACGTAGC 59.666 52.381 10.55 10.55 0.00 3.58
5042 8754 2.970974 GCAGGTGAAGAAGCGGTGC 61.971 63.158 0.00 0.00 0.00 5.01
5096 8808 1.377987 GCCACCAATCTTACCGGCA 60.378 57.895 0.00 0.00 39.38 5.69
5113 8825 1.796151 CAGCAGTACGCCACCATTG 59.204 57.895 6.15 0.00 44.04 2.82
5117 8829 0.321210 CAGTACGCCACCATTGACCA 60.321 55.000 0.00 0.00 0.00 4.02
5150 8862 3.690460 ACATGTAGCCAGGAAAAAGAGG 58.310 45.455 0.00 0.00 0.00 3.69
5152 8864 3.418684 TGTAGCCAGGAAAAAGAGGAC 57.581 47.619 0.00 0.00 0.00 3.85
5155 8867 1.630878 AGCCAGGAAAAAGAGGACGAT 59.369 47.619 0.00 0.00 0.00 3.73
5185 8897 4.142116 CCAGCATATGAAGCAATTCCACAA 60.142 41.667 6.97 0.00 0.00 3.33
5227 8939 0.400213 TTGAAACTCCACCGGCTCAT 59.600 50.000 0.00 0.00 0.00 2.90
5392 9110 1.547372 AGGCGAAAAATGCATGCTCTT 59.453 42.857 20.33 9.70 0.00 2.85
5434 9152 0.174389 ACAGCATGCTAGTGGAGACG 59.826 55.000 22.19 7.14 42.53 4.18
5575 9293 1.004440 GACAAAGCTGCTCGTCCCT 60.004 57.895 17.03 0.00 0.00 4.20
5606 9324 2.825836 GAAGCTCCCCGGTGCATG 60.826 66.667 10.22 0.00 37.12 4.06
5629 9347 1.934220 GAGATGACGGCGGACACAGA 61.934 60.000 13.24 0.00 0.00 3.41
5678 9396 3.966026 GAGTTCCGACGTGCCCTCG 62.966 68.421 0.00 0.00 0.00 4.63
5717 9435 1.494721 GGTCAATCAAGGGGATAGCCA 59.505 52.381 0.00 0.00 34.28 4.75
5836 9565 0.762418 TCGGAGCCTGAAAGTGGAAA 59.238 50.000 0.00 0.00 0.00 3.13
5839 9568 2.306847 GGAGCCTGAAAGTGGAAACAA 58.693 47.619 0.00 0.00 46.06 2.83
5842 9571 3.096092 AGCCTGAAAGTGGAAACAACAA 58.904 40.909 0.00 0.00 46.06 2.83
5862 9591 6.596309 ACAAGTGATGTACTCTGATTCTCA 57.404 37.500 0.00 0.00 41.63 3.27
5863 9592 6.997655 ACAAGTGATGTACTCTGATTCTCAA 58.002 36.000 0.00 0.00 41.63 3.02
5864 9593 6.870965 ACAAGTGATGTACTCTGATTCTCAAC 59.129 38.462 0.00 0.00 41.63 3.18
5868 9597 7.394641 AGTGATGTACTCTGATTCTCAACTGTA 59.605 37.037 0.00 0.00 33.17 2.74
5973 9705 8.136165 TGTTGTTTGTTTTGTTACACTGTACTT 58.864 29.630 0.00 0.00 0.00 2.24
6008 9812 7.010023 GCGGCTCATTCGAATTAATTACTAAG 58.990 38.462 8.21 0.00 0.00 2.18
6034 10155 3.998913 TTGGTTGGTAGCATGATCTGA 57.001 42.857 0.00 0.00 0.00 3.27
6123 10256 5.457473 CCTTTTTCTACGCGTGAAAACAAAT 59.543 36.000 30.84 6.47 41.32 2.32
6128 10261 7.541743 TTCTACGCGTGAAAACAAATAATTG 57.458 32.000 24.59 0.00 42.46 2.32
6245 10379 9.798994 ACTAGATCATCAAATTCATTTTTGAGC 57.201 29.630 0.00 3.58 45.83 4.26
6437 10624 1.284657 CTCGCCATGACATCTGACAC 58.715 55.000 0.00 0.00 0.00 3.67
6440 10627 1.812235 GCCATGACATCTGACACACA 58.188 50.000 0.00 0.00 0.00 3.72
6468 10660 6.085573 CGCACATAACATTGTCAAATCAAGA 58.914 36.000 0.00 0.00 0.00 3.02
6508 10734 9.387397 TCCAGGTTAATAATAGATGACCATACA 57.613 33.333 0.00 0.00 0.00 2.29
6509 10735 9.658799 CCAGGTTAATAATAGATGACCATACAG 57.341 37.037 0.00 0.00 0.00 2.74
6512 10738 9.654663 GGTTAATAATAGATGACCATACAGACC 57.345 37.037 0.00 0.00 0.00 3.85
6519 10745 8.727100 ATAGATGACCATACAGACCAATAAGA 57.273 34.615 0.00 0.00 0.00 2.10
6520 10746 7.060383 AGATGACCATACAGACCAATAAGAG 57.940 40.000 0.00 0.00 0.00 2.85
6521 10747 5.023533 TGACCATACAGACCAATAAGAGC 57.976 43.478 0.00 0.00 0.00 4.09
6522 10748 4.141711 TGACCATACAGACCAATAAGAGCC 60.142 45.833 0.00 0.00 0.00 4.70
6523 10749 3.181465 ACCATACAGACCAATAAGAGCCG 60.181 47.826 0.00 0.00 0.00 5.52
6524 10750 3.069586 CCATACAGACCAATAAGAGCCGA 59.930 47.826 0.00 0.00 0.00 5.54
6525 10751 4.442893 CCATACAGACCAATAAGAGCCGAA 60.443 45.833 0.00 0.00 0.00 4.30
6526 10752 3.695830 ACAGACCAATAAGAGCCGAAA 57.304 42.857 0.00 0.00 0.00 3.46
6527 10753 3.600388 ACAGACCAATAAGAGCCGAAAG 58.400 45.455 0.00 0.00 0.00 2.62
6528 10754 2.352960 CAGACCAATAAGAGCCGAAAGC 59.647 50.000 0.00 0.00 44.25 3.51
6582 10808 0.536006 AGGAGCAGCACAACCTCAAC 60.536 55.000 0.00 0.00 0.00 3.18
6609 10835 3.509575 GCTATCTCCAATCCTCGACTCAT 59.490 47.826 0.00 0.00 0.00 2.90
6619 10845 3.822192 CGACTCATCGGCCCGACA 61.822 66.667 8.62 0.00 44.99 4.35
6651 10877 3.796764 GCTATGGGCTCTTCAGCTT 57.203 52.632 0.00 0.00 46.03 3.74
6652 10878 1.307097 GCTATGGGCTCTTCAGCTTG 58.693 55.000 0.00 0.00 46.03 4.01
6655 10881 0.251474 ATGGGCTCTTCAGCTTGCAA 60.251 50.000 0.00 0.00 46.03 4.08
6656 10882 0.467844 TGGGCTCTTCAGCTTGCAAA 60.468 50.000 0.00 0.00 46.03 3.68
6667 10893 2.032981 CTTGCAAAACCTCCACGCT 58.967 52.632 0.00 0.00 0.00 5.07
6682 10923 1.135859 CACGCTTTGTTCCAGCATCTC 60.136 52.381 0.00 0.00 37.07 2.75
6683 10924 0.449388 CGCTTTGTTCCAGCATCTCC 59.551 55.000 0.00 0.00 37.07 3.71
6684 10925 1.831580 GCTTTGTTCCAGCATCTCCT 58.168 50.000 0.00 0.00 37.22 3.69
6685 10926 1.742268 GCTTTGTTCCAGCATCTCCTC 59.258 52.381 0.00 0.00 37.22 3.71
6686 10927 2.005451 CTTTGTTCCAGCATCTCCTCG 58.995 52.381 0.00 0.00 0.00 4.63
6687 10928 0.250234 TTGTTCCAGCATCTCCTCGG 59.750 55.000 0.00 0.00 0.00 4.63
6688 10929 0.904865 TGTTCCAGCATCTCCTCGGT 60.905 55.000 0.00 0.00 0.00 4.69
6689 10930 1.112113 GTTCCAGCATCTCCTCGGTA 58.888 55.000 0.00 0.00 0.00 4.02
6690 10931 1.112113 TTCCAGCATCTCCTCGGTAC 58.888 55.000 0.00 0.00 0.00 3.34
6691 10932 0.755698 TCCAGCATCTCCTCGGTACC 60.756 60.000 0.16 0.16 0.00 3.34
6692 10933 0.757188 CCAGCATCTCCTCGGTACCT 60.757 60.000 10.90 0.00 0.00 3.08
6693 10934 1.115467 CAGCATCTCCTCGGTACCTT 58.885 55.000 10.90 0.00 0.00 3.50
6694 10935 1.067821 CAGCATCTCCTCGGTACCTTC 59.932 57.143 10.90 0.00 0.00 3.46
6695 10936 0.389757 GCATCTCCTCGGTACCTTCC 59.610 60.000 10.90 0.00 0.00 3.46
6696 10937 2.030045 GCATCTCCTCGGTACCTTCCT 61.030 57.143 10.90 0.00 0.00 3.36
6701 10942 1.918262 TCCTCGGTACCTTCCTGAGTA 59.082 52.381 10.90 0.00 31.43 2.59
6787 11063 8.863872 AAGACTTGGTAAACTGCTTATACAAT 57.136 30.769 0.00 0.00 0.00 2.71
6893 11173 8.204836 ACTCAGACTCAGTTTTATGTGTTTACT 58.795 33.333 0.00 0.00 0.00 2.24
6909 11189 7.690228 TGTGTTTACTAGTGTACTTTTGCAAG 58.310 34.615 5.39 0.00 35.92 4.01
6916 11196 5.485662 AGTGTACTTTTGCAAGACAAGTC 57.514 39.130 16.28 10.14 40.06 3.01
6935 11215 5.019785 AGTCGGAAACCTGGAATACATAC 57.980 43.478 0.00 0.00 0.00 2.39
6936 11216 4.715297 AGTCGGAAACCTGGAATACATACT 59.285 41.667 0.00 0.00 0.00 2.12
6937 11217 5.189145 AGTCGGAAACCTGGAATACATACTT 59.811 40.000 0.00 0.00 0.00 2.24
6938 11218 6.381994 AGTCGGAAACCTGGAATACATACTTA 59.618 38.462 0.00 0.00 0.00 2.24
6939 11219 6.478016 GTCGGAAACCTGGAATACATACTTAC 59.522 42.308 0.00 0.00 0.00 2.34
6940 11220 6.154877 TCGGAAACCTGGAATACATACTTACA 59.845 38.462 0.00 0.00 0.00 2.41
6941 11221 6.990349 CGGAAACCTGGAATACATACTTACAT 59.010 38.462 0.00 0.00 0.00 2.29
6942 11222 8.145767 CGGAAACCTGGAATACATACTTACATA 58.854 37.037 0.00 0.00 0.00 2.29
6943 11223 9.490379 GGAAACCTGGAATACATACTTACATAG 57.510 37.037 0.00 0.00 0.00 2.23
6944 11224 8.904099 AAACCTGGAATACATACTTACATAGC 57.096 34.615 0.00 0.00 0.00 2.97
6945 11225 6.688578 ACCTGGAATACATACTTACATAGCG 58.311 40.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.560505 AGGAAGAATGCCGCCAATTT 58.439 45.000 0.00 0.00 40.87 1.82
329 330 0.248377 GCTTGGTCGACGCTACGTAT 60.248 55.000 9.92 0.00 41.37 3.06
769 773 8.300286 TCATGTAGATCTTCACCGATTCTAATC 58.700 37.037 0.00 0.00 0.00 1.75
770 774 8.183104 TCATGTAGATCTTCACCGATTCTAAT 57.817 34.615 0.00 0.00 0.00 1.73
771 775 7.582667 TCATGTAGATCTTCACCGATTCTAA 57.417 36.000 0.00 0.00 0.00 2.10
772 776 7.582667 TTCATGTAGATCTTCACCGATTCTA 57.417 36.000 0.00 0.00 0.00 2.10
773 777 6.471233 TTCATGTAGATCTTCACCGATTCT 57.529 37.500 0.00 0.00 0.00 2.40
774 778 7.721286 ATTTCATGTAGATCTTCACCGATTC 57.279 36.000 0.00 0.00 0.00 2.52
776 780 9.862371 GTATATTTCATGTAGATCTTCACCGAT 57.138 33.333 0.00 0.00 0.00 4.18
777 781 8.856103 TGTATATTTCATGTAGATCTTCACCGA 58.144 33.333 0.00 0.00 0.00 4.69
778 782 9.476202 TTGTATATTTCATGTAGATCTTCACCG 57.524 33.333 0.00 0.00 0.00 4.94
801 805 9.090692 GCAAATCTTGTGCATATTAAATCTTGT 57.909 29.630 0.00 0.00 41.80 3.16
802 806 9.089601 TGCAAATCTTGTGCATATTAAATCTTG 57.910 29.630 0.00 0.00 46.76 3.02
815 819 5.572896 GGTAGTAATTGTGCAAATCTTGTGC 59.427 40.000 0.00 0.00 42.55 4.57
816 820 6.803320 CAGGTAGTAATTGTGCAAATCTTGTG 59.197 38.462 0.00 0.00 0.00 3.33
817 821 6.714810 TCAGGTAGTAATTGTGCAAATCTTGT 59.285 34.615 0.00 0.00 0.00 3.16
818 822 7.144722 TCAGGTAGTAATTGTGCAAATCTTG 57.855 36.000 0.00 0.00 0.00 3.02
819 823 7.944729 ATCAGGTAGTAATTGTGCAAATCTT 57.055 32.000 0.00 0.00 0.00 2.40
820 824 7.831193 AGAATCAGGTAGTAATTGTGCAAATCT 59.169 33.333 0.00 0.00 0.00 2.40
821 825 7.989826 AGAATCAGGTAGTAATTGTGCAAATC 58.010 34.615 0.00 0.00 0.00 2.17
822 826 7.944729 AGAATCAGGTAGTAATTGTGCAAAT 57.055 32.000 0.00 0.00 0.00 2.32
823 827 7.759489 AAGAATCAGGTAGTAATTGTGCAAA 57.241 32.000 0.00 0.00 0.00 3.68
824 828 7.759489 AAAGAATCAGGTAGTAATTGTGCAA 57.241 32.000 0.00 0.00 0.00 4.08
825 829 7.759489 AAAAGAATCAGGTAGTAATTGTGCA 57.241 32.000 0.00 0.00 0.00 4.57
848 852 4.216687 CAGGTAGTAATTCACCCGCAAAAA 59.783 41.667 1.26 0.00 35.25 1.94
849 853 3.754323 CAGGTAGTAATTCACCCGCAAAA 59.246 43.478 1.26 0.00 35.25 2.44
850 854 3.008157 TCAGGTAGTAATTCACCCGCAAA 59.992 43.478 1.26 0.00 35.25 3.68
851 855 2.568062 TCAGGTAGTAATTCACCCGCAA 59.432 45.455 1.26 0.00 35.25 4.85
852 856 2.181125 TCAGGTAGTAATTCACCCGCA 58.819 47.619 1.26 0.00 35.25 5.69
853 857 2.973694 TCAGGTAGTAATTCACCCGC 57.026 50.000 1.26 0.00 35.25 6.13
854 858 5.277857 AGAATCAGGTAGTAATTCACCCG 57.722 43.478 0.00 0.00 35.25 5.28
855 859 5.130477 TGGAGAATCAGGTAGTAATTCACCC 59.870 44.000 7.87 4.48 38.57 4.61
856 860 6.235231 TGGAGAATCAGGTAGTAATTCACC 57.765 41.667 0.00 0.00 39.30 4.02
857 861 6.203723 GCATGGAGAATCAGGTAGTAATTCAC 59.796 42.308 0.00 0.00 36.25 3.18
858 862 6.126796 TGCATGGAGAATCAGGTAGTAATTCA 60.127 38.462 0.00 0.00 36.25 2.57
859 863 6.291377 TGCATGGAGAATCAGGTAGTAATTC 58.709 40.000 0.00 0.00 36.25 2.17
868 872 1.022735 GTGCTGCATGGAGAATCAGG 58.977 55.000 19.59 0.00 36.25 3.86
870 874 0.249955 TCGTGCTGCATGGAGAATCA 59.750 50.000 19.59 3.51 36.25 2.57
876 880 2.295629 TGAAAATTTCGTGCTGCATGGA 59.704 40.909 20.78 10.60 0.00 3.41
890 894 3.706086 AGGCAAGGTTGTCAGTGAAAATT 59.294 39.130 0.00 0.00 34.61 1.82
898 902 3.157087 ACCATTTAGGCAAGGTTGTCAG 58.843 45.455 0.00 0.00 43.14 3.51
946 953 5.917087 TGGACCTCCTTATATGGGAAATTCT 59.083 40.000 4.90 0.00 36.82 2.40
955 962 5.186021 ACTTAGCGATGGACCTCCTTATATG 59.814 44.000 0.00 0.00 36.82 1.78
977 984 3.717452 ACTTCGAGTGTCCTAGGTACT 57.283 47.619 17.53 17.53 46.37 2.73
994 1001 7.255139 GCTCTTTCCATTGTTGTGTAGTTACTT 60.255 37.037 0.00 0.00 0.00 2.24
1001 1008 4.460263 AGTGCTCTTTCCATTGTTGTGTA 58.540 39.130 0.00 0.00 0.00 2.90
1157 1164 4.367023 TCGCGTGCCACCCTGTAC 62.367 66.667 5.77 0.00 0.00 2.90
1212 1219 1.018910 TGGATCATGCGTGCATTCTG 58.981 50.000 4.24 0.00 33.90 3.02
1252 1292 1.576356 GACCTCTTCATCGGTCATGC 58.424 55.000 3.72 0.00 46.98 4.06
1382 1422 2.642129 CGTTTGCGCCAATCCACA 59.358 55.556 4.18 0.00 0.00 4.17
1478 1533 0.178767 TGATGGAGTTGATGCCCTCG 59.821 55.000 0.00 0.00 0.00 4.63
1610 1665 4.812476 TCTGTTCCGATGCCGCCG 62.812 66.667 0.00 0.00 0.00 6.46
1621 1676 3.521947 ACGGGTACTTAGCATCTGTTC 57.478 47.619 0.00 0.00 0.00 3.18
1672 1727 2.199652 TTCTGGTTTGGCTTGGGCG 61.200 57.895 0.00 0.00 39.81 6.13
1687 1742 0.038526 GATGGTGACGACCGTGTTCT 60.039 55.000 0.00 0.00 46.62 3.01
1730 1785 2.947652 CTCCAACGCCATCATCTCATTT 59.052 45.455 0.00 0.00 0.00 2.32
1737 1792 1.452651 CCTGCTCCAACGCCATCAT 60.453 57.895 0.00 0.00 0.00 2.45
1803 1858 1.077716 GCCCATAGCGTTGGAAGGT 60.078 57.895 9.31 0.00 39.25 3.50
1839 1894 1.303236 CCAGGTTTGTCCCGCATGA 60.303 57.895 0.00 0.00 36.75 3.07
1949 2005 3.721706 CACCCCAGTCTGCCCCTC 61.722 72.222 0.00 0.00 0.00 4.30
1950 2006 3.810687 TTCACCCCAGTCTGCCCCT 62.811 63.158 0.00 0.00 0.00 4.79
1982 2038 4.569023 TCACCTCGCGCGCTATGG 62.569 66.667 30.48 27.16 0.00 2.74
2036 2092 2.278596 CTGGGTATGACGCGTCCG 60.279 66.667 34.34 12.94 41.14 4.79
2144 2201 2.337583 AGAACACATGAACGGTCGATG 58.662 47.619 0.00 10.21 0.00 3.84
2147 2204 6.693978 TGTATAATAGAACACATGAACGGTCG 59.306 38.462 0.00 0.00 0.00 4.79
2428 2486 9.549509 TGTTGTGTTTTAATAGCGATACAATTC 57.450 29.630 0.00 0.00 0.00 2.17
2526 3262 3.241493 CCAGTGGTTGGTGCGATAA 57.759 52.632 0.00 0.00 42.41 1.75
2536 3272 5.367644 ACTTGTACCTTACTTACCAGTGGTT 59.632 40.000 22.49 4.98 37.09 3.67
2537 3273 4.903649 ACTTGTACCTTACTTACCAGTGGT 59.096 41.667 20.91 20.91 40.16 4.16
2566 3302 2.125106 GTGGGTGGACGGATCTGC 60.125 66.667 0.00 0.00 0.00 4.26
2584 3320 4.758165 CCGGTAAAGACAACAAACTATGGT 59.242 41.667 0.00 0.00 0.00 3.55
2585 3321 4.758165 ACCGGTAAAGACAACAAACTATGG 59.242 41.667 4.49 0.00 0.00 2.74
2587 3323 4.758165 CCACCGGTAAAGACAACAAACTAT 59.242 41.667 6.87 0.00 0.00 2.12
2588 3324 4.128643 CCACCGGTAAAGACAACAAACTA 58.871 43.478 6.87 0.00 0.00 2.24
2612 3348 1.899617 CGGGCATCAAAAAGGGCAT 59.100 52.632 0.00 0.00 0.00 4.40
2641 5479 2.765689 TTTTTCTTGGGCCTGGAAGA 57.234 45.000 4.53 2.40 34.07 2.87
2663 5501 1.736696 GCGCTGCCACAATAGCATTTT 60.737 47.619 0.00 0.00 40.04 1.82
2664 5502 0.179129 GCGCTGCCACAATAGCATTT 60.179 50.000 0.00 0.00 40.04 2.32
2665 5503 1.314534 TGCGCTGCCACAATAGCATT 61.315 50.000 9.73 0.00 40.04 3.56
2666 5504 1.750018 TGCGCTGCCACAATAGCAT 60.750 52.632 9.73 0.00 40.04 3.79
2725 5563 1.635844 ATGAACGCTTGCAATGCATG 58.364 45.000 9.39 13.09 38.76 4.06
2728 5566 5.273170 TCTTTATATGAACGCTTGCAATGC 58.727 37.500 0.00 5.17 0.00 3.56
2738 5588 8.894409 TTGCACTTTCAATCTTTATATGAACG 57.106 30.769 0.00 0.00 33.13 3.95
2763 5613 6.206048 CCATCAATGTAGTGTGATGCATGTAT 59.794 38.462 2.46 0.00 46.45 2.29
2789 5639 8.915036 AGTCTTAGTAAGATGTAACGATGGATT 58.085 33.333 15.53 0.00 40.18 3.01
2792 5642 8.074972 GGTAGTCTTAGTAAGATGTAACGATGG 58.925 40.741 15.53 0.00 40.18 3.51
2805 5655 6.210185 GGTCCTCTTGTTGGTAGTCTTAGTAA 59.790 42.308 0.00 0.00 0.00 2.24
2807 5657 4.527427 GGTCCTCTTGTTGGTAGTCTTAGT 59.473 45.833 0.00 0.00 0.00 2.24
2808 5658 4.527038 TGGTCCTCTTGTTGGTAGTCTTAG 59.473 45.833 0.00 0.00 0.00 2.18
2809 5659 4.485875 TGGTCCTCTTGTTGGTAGTCTTA 58.514 43.478 0.00 0.00 0.00 2.10
2810 5660 3.314693 TGGTCCTCTTGTTGGTAGTCTT 58.685 45.455 0.00 0.00 0.00 3.01
2822 5672 2.810400 CGACACATTGGTTGGTCCTCTT 60.810 50.000 0.00 0.00 37.07 2.85
2823 5673 1.270839 CGACACATTGGTTGGTCCTCT 60.271 52.381 0.00 0.00 37.07 3.69
2837 5687 3.158537 TTTCGGAGCAGGCGACACA 62.159 57.895 0.00 0.00 0.00 3.72
2841 5691 4.735132 CGGTTTCGGAGCAGGCGA 62.735 66.667 0.00 0.00 0.00 5.54
2853 5703 1.612442 TAGGGCAGAGCTCCGGTTT 60.612 57.895 10.93 0.00 0.00 3.27
2862 5712 2.435805 TGAGCTATTTGGTAGGGCAGAG 59.564 50.000 0.00 0.00 0.00 3.35
2880 5730 5.473162 TGTTATCATGAAGTGGTTGGTTGAG 59.527 40.000 0.00 0.00 0.00 3.02
2881 5731 5.380900 TGTTATCATGAAGTGGTTGGTTGA 58.619 37.500 0.00 0.00 0.00 3.18
2886 5736 7.754924 GGTGTTATTGTTATCATGAAGTGGTTG 59.245 37.037 0.00 0.00 0.00 3.77
2890 5740 6.376864 TGGGGTGTTATTGTTATCATGAAGTG 59.623 38.462 0.00 0.00 0.00 3.16
2893 5743 7.617329 TCATTGGGGTGTTATTGTTATCATGAA 59.383 33.333 0.00 0.00 0.00 2.57
2926 5776 3.050275 GCTCAACGCCCTCCACAC 61.050 66.667 0.00 0.00 0.00 3.82
2944 5794 0.594284 CGTAGTCTCCGGCGAAATCC 60.594 60.000 9.30 0.00 0.00 3.01
2945 5795 0.594284 CCGTAGTCTCCGGCGAAATC 60.594 60.000 9.30 0.00 38.85 2.17
2946 5796 1.436336 CCGTAGTCTCCGGCGAAAT 59.564 57.895 9.30 0.00 38.85 2.17
2962 5812 2.819595 CCATGACGCCTCCAACCG 60.820 66.667 0.00 0.00 0.00 4.44
2972 5822 1.377202 CTTCCCCACCACCATGACG 60.377 63.158 0.00 0.00 0.00 4.35
2976 5826 2.863484 TGCCTTCCCCACCACCAT 60.863 61.111 0.00 0.00 0.00 3.55
2995 5845 1.745489 GTCCCGTGTGCTTGGATCC 60.745 63.158 4.20 4.20 0.00 3.36
3033 5883 1.102978 AACCATGCCCATTCGTAAGC 58.897 50.000 0.00 0.00 37.18 3.09
3067 5918 6.478512 TTTTGCAGTTTAAAGGAATCTGGT 57.521 33.333 5.28 0.00 35.98 4.00
3098 5950 1.878522 GGATCGAATCACGCACGCT 60.879 57.895 0.00 0.00 42.26 5.07
3245 6868 6.378280 TGAGTGCTCCTCTTTTCTTTTTCTTT 59.622 34.615 5.72 0.00 41.11 2.52
3248 6871 5.066505 TGTGAGTGCTCCTCTTTTCTTTTTC 59.933 40.000 5.72 0.00 41.11 2.29
3252 6875 3.135530 ACTGTGAGTGCTCCTCTTTTCTT 59.864 43.478 5.72 0.00 41.11 2.52
3253 6876 2.703007 ACTGTGAGTGCTCCTCTTTTCT 59.297 45.455 5.72 0.00 41.11 2.52
3254 6877 3.118905 ACTGTGAGTGCTCCTCTTTTC 57.881 47.619 5.72 0.00 41.11 2.29
3258 6881 3.093057 TCATACTGTGAGTGCTCCTCT 57.907 47.619 5.72 0.00 41.11 3.69
3268 6891 0.817654 CAGCGTCCCTCATACTGTGA 59.182 55.000 0.00 0.00 35.05 3.58
3269 6892 0.817654 TCAGCGTCCCTCATACTGTG 59.182 55.000 0.00 0.00 0.00 3.66
3271 6894 0.817654 TGTCAGCGTCCCTCATACTG 59.182 55.000 0.00 0.00 0.00 2.74
3272 6895 1.683917 GATGTCAGCGTCCCTCATACT 59.316 52.381 0.00 0.00 0.00 2.12
3273 6896 1.269831 GGATGTCAGCGTCCCTCATAC 60.270 57.143 0.00 0.00 43.40 2.39
3274 6897 1.040646 GGATGTCAGCGTCCCTCATA 58.959 55.000 0.00 0.00 43.40 2.15
3275 6898 1.826024 GGATGTCAGCGTCCCTCAT 59.174 57.895 0.00 0.00 43.40 2.90
3276 6899 2.710902 CGGATGTCAGCGTCCCTCA 61.711 63.158 0.79 0.00 45.77 3.86
3277 6900 2.105128 CGGATGTCAGCGTCCCTC 59.895 66.667 0.79 0.00 45.77 4.30
3278 6901 2.362503 TCGGATGTCAGCGTCCCT 60.363 61.111 0.79 0.00 45.77 4.20
3279 6902 2.105128 CTCGGATGTCAGCGTCCC 59.895 66.667 0.79 0.00 45.77 4.46
3303 6926 1.303317 AATCCACAACCGGCTCCAC 60.303 57.895 0.00 0.00 0.00 4.02
3386 7015 1.308783 GGGAAGGAAGGAAAGCAGCG 61.309 60.000 0.00 0.00 0.00 5.18
3418 7047 2.930385 AAGCGGCTGGATGTGGATCG 62.930 60.000 1.81 0.00 0.00 3.69
3423 7052 2.409870 GGGAAAGCGGCTGGATGTG 61.410 63.158 1.81 0.00 0.00 3.21
3452 7081 1.087501 GCAGGGAAACGAGTTGGATC 58.912 55.000 0.00 0.00 0.00 3.36
3502 7131 3.451894 CGGGATGGGCTTGTTGGC 61.452 66.667 0.00 0.00 40.96 4.52
3635 7297 4.035208 GTGATCACAACAGAAAACGAGGTT 59.965 41.667 21.07 0.00 0.00 3.50
3640 7302 9.478019 GATTATTAGTGATCACAACAGAAAACG 57.522 33.333 27.02 0.00 0.00 3.60
3661 7323 9.411848 AGGGAGGAAAATAGTTAGATGGATTAT 57.588 33.333 0.00 0.00 0.00 1.28
3662 7324 8.660435 CAGGGAGGAAAATAGTTAGATGGATTA 58.340 37.037 0.00 0.00 0.00 1.75
3809 7478 0.033504 AGGTAGTCCTGCACGTTGTG 59.966 55.000 0.00 0.00 43.33 3.33
3892 7573 4.704833 CCTCCGGTGTGTGCCTGG 62.705 72.222 0.00 0.00 0.00 4.45
3914 7595 2.747460 TGCATTGAGAGGCCGCAC 60.747 61.111 9.88 2.33 0.00 5.34
4028 7713 5.823209 TGCTGTGATGGTTTATGATTGAG 57.177 39.130 0.00 0.00 0.00 3.02
4040 7725 0.615544 ATTGGGGGTTGCTGTGATGG 60.616 55.000 0.00 0.00 0.00 3.51
4043 7728 1.228831 CCATTGGGGGTTGCTGTGA 60.229 57.895 0.00 0.00 0.00 3.58
4048 7733 3.705289 GGTGCCATTGGGGGTTGC 61.705 66.667 4.53 0.00 37.04 4.17
4088 7773 1.068250 GAGCTGCCACGGTAGGATC 59.932 63.158 0.00 0.00 0.00 3.36
4136 7821 1.968017 ACATGCCGCTGGAGTTGTG 60.968 57.895 0.00 0.00 0.00 3.33
4179 7864 1.815003 GTGGCTGATGGTTGAAAGGAG 59.185 52.381 0.00 0.00 0.00 3.69
4247 7932 3.128589 GGAAGCCGATTTGCTGATGTTAA 59.871 43.478 0.00 0.00 41.80 2.01
4248 7933 2.682856 GGAAGCCGATTTGCTGATGTTA 59.317 45.455 0.00 0.00 41.80 2.41
4296 7981 1.329913 GGGTGCCATTGGGTTGATCC 61.330 60.000 4.53 0.00 36.17 3.36
4409 8094 4.201990 CCTCAAATAATCTTGCTGTGGCTC 60.202 45.833 0.00 0.00 39.59 4.70
4647 8359 3.526899 TGGTTTGTTATCCTCTGAGGGA 58.473 45.455 23.00 10.63 39.95 4.20
4810 8522 2.885266 ACGATCTATGCGTATCTGGTGT 59.115 45.455 0.00 0.00 40.65 4.16
4818 8530 4.759516 TGCAGAATACGATCTATGCGTA 57.240 40.909 0.00 0.00 46.62 4.42
4820 8532 5.521516 AAATGCAGAATACGATCTATGCG 57.478 39.130 0.00 0.00 0.00 4.73
4826 8538 5.504665 CCCTGTGAAAATGCAGAATACGATC 60.505 44.000 0.00 0.00 34.87 3.69
4851 8563 1.554617 TCTGCAACCGATCCTTCATGA 59.445 47.619 0.00 0.00 0.00 3.07
4893 8605 1.065418 GGCTACCTGTTGCACCTATGT 60.065 52.381 6.10 0.00 33.06 2.29
4897 8609 1.376466 CTGGCTACCTGTTGCACCT 59.624 57.895 6.10 0.00 33.06 4.00
4908 8620 3.338249 TCTTGATGTTTCTGCTGGCTAC 58.662 45.455 0.00 0.00 0.00 3.58
5018 8730 1.351153 GCTTCTTCACCTGCTACGTC 58.649 55.000 0.00 0.00 0.00 4.34
5021 8733 0.037232 ACCGCTTCTTCACCTGCTAC 60.037 55.000 0.00 0.00 0.00 3.58
5023 8735 1.302033 CACCGCTTCTTCACCTGCT 60.302 57.895 0.00 0.00 0.00 4.24
5025 8737 1.597854 TGCACCGCTTCTTCACCTG 60.598 57.895 0.00 0.00 0.00 4.00
5096 8808 0.673644 GTCAATGGTGGCGTACTGCT 60.674 55.000 9.06 0.00 45.43 4.24
5113 8825 2.154462 CATGTTCCACTTCCACTGGTC 58.846 52.381 0.00 0.00 0.00 4.02
5117 8829 2.290323 GGCTACATGTTCCACTTCCACT 60.290 50.000 2.30 0.00 0.00 4.00
5150 8862 4.752146 TCATATGCTGGATGATGATCGTC 58.248 43.478 8.06 8.06 0.00 4.20
5152 8864 4.034163 GCTTCATATGCTGGATGATGATCG 59.966 45.833 0.00 0.00 33.41 3.69
5155 8867 4.360951 TGCTTCATATGCTGGATGATGA 57.639 40.909 0.00 0.00 33.41 2.92
5185 8897 2.563179 AGGATTAGCGTTCTGTGTCAGT 59.437 45.455 0.00 0.00 32.61 3.41
5359 9071 0.034756 TTCGCCTCTTGTTGCAGCTA 59.965 50.000 1.17 0.00 0.00 3.32
5392 9110 1.815840 AGCTCTGATCTCGTCGCGA 60.816 57.895 3.71 3.71 0.00 5.87
5434 9152 3.648009 GTCATCGGTGATTCTGATCTCC 58.352 50.000 0.00 0.00 39.87 3.71
5575 9293 2.967397 CTTCGTGGGTAGTCCGCA 59.033 61.111 0.00 0.00 46.14 5.69
5604 9322 2.413351 CGCCGTCATCTCCGACAT 59.587 61.111 0.00 0.00 35.54 3.06
5606 9324 3.515286 TCCGCCGTCATCTCCGAC 61.515 66.667 0.00 0.00 0.00 4.79
5629 9347 1.986210 GCCAGCTGCAATCCCCTTT 60.986 57.895 8.66 0.00 40.77 3.11
5836 9565 6.763355 AGAATCAGAGTACATCACTTGTTGT 58.237 36.000 0.00 0.00 39.87 3.32
5839 9568 6.596309 TGAGAATCAGAGTACATCACTTGT 57.404 37.500 0.00 0.00 42.56 3.16
5862 9591 0.884704 CTGTTGCGCCCAGTACAGTT 60.885 55.000 4.18 0.00 34.68 3.16
5863 9592 1.301716 CTGTTGCGCCCAGTACAGT 60.302 57.895 4.18 0.00 34.68 3.55
5864 9593 2.680913 GCTGTTGCGCCCAGTACAG 61.681 63.158 20.96 17.86 40.65 2.74
5884 9615 5.500234 TCTGCAGATAGCCAAATACAAGTT 58.500 37.500 13.74 0.00 44.83 2.66
5885 9616 5.102953 TCTGCAGATAGCCAAATACAAGT 57.897 39.130 13.74 0.00 44.83 3.16
6008 9812 6.974622 CAGATCATGCTACCAACCAAAATTAC 59.025 38.462 0.00 0.00 0.00 1.89
6034 10155 9.116067 TGTTTGCAGACTTTAACTACTGTATTT 57.884 29.630 9.02 0.00 33.57 1.40
6109 10242 5.401079 ACCTTCAATTATTTGTTTTCACGCG 59.599 36.000 3.53 3.53 34.32 6.01
6123 10256 6.539173 TGCTGGTTCTCTTTACCTTCAATTA 58.461 36.000 0.00 0.00 36.60 1.40
6128 10261 4.273148 TCTGCTGGTTCTCTTTACCTTC 57.727 45.455 0.00 0.00 36.60 3.46
6228 10362 8.890124 TTCTTCATGCTCAAAAATGAATTTGA 57.110 26.923 2.85 2.85 44.68 2.69
6245 10379 7.255491 TCTGAATCGAATGGATTTCTTCATG 57.745 36.000 0.00 0.00 45.33 3.07
6408 10595 1.798223 GTCATGGCGAGCGCATTAATA 59.202 47.619 17.16 0.00 44.11 0.98
6437 10624 4.145876 ACAATGTTATGTGCGTCTTGTG 57.854 40.909 0.00 0.00 30.82 3.33
6440 10627 5.431420 TTTGACAATGTTATGTGCGTCTT 57.569 34.783 0.00 0.00 32.57 3.01
6468 10660 6.540438 TTAACCTGGATTAATCTCGTCTGT 57.460 37.500 14.95 2.46 0.00 3.41
6508 10734 2.027192 TGCTTTCGGCTCTTATTGGTCT 60.027 45.455 0.00 0.00 42.39 3.85
6509 10735 2.096013 GTGCTTTCGGCTCTTATTGGTC 59.904 50.000 0.00 0.00 42.39 4.02
6510 10736 2.084546 GTGCTTTCGGCTCTTATTGGT 58.915 47.619 0.00 0.00 42.39 3.67
6511 10737 1.401905 GGTGCTTTCGGCTCTTATTGG 59.598 52.381 0.00 0.00 42.39 3.16
6512 10738 1.401905 GGGTGCTTTCGGCTCTTATTG 59.598 52.381 0.00 0.00 42.39 1.90
6513 10739 1.282157 AGGGTGCTTTCGGCTCTTATT 59.718 47.619 0.00 0.00 42.39 1.40
6514 10740 0.912486 AGGGTGCTTTCGGCTCTTAT 59.088 50.000 0.00 0.00 42.39 1.73
6515 10741 0.036388 CAGGGTGCTTTCGGCTCTTA 60.036 55.000 0.00 0.00 42.39 2.10
6516 10742 1.302832 CAGGGTGCTTTCGGCTCTT 60.303 57.895 0.00 0.00 42.39 2.85
6517 10743 2.348998 CAGGGTGCTTTCGGCTCT 59.651 61.111 0.00 0.00 42.39 4.09
6518 10744 3.435186 GCAGGGTGCTTTCGGCTC 61.435 66.667 0.00 0.00 40.96 4.70
6527 10753 3.248446 TTGGTCCGTAGCAGGGTGC 62.248 63.158 0.00 0.00 45.46 5.01
6528 10754 1.375523 GTTGGTCCGTAGCAGGGTG 60.376 63.158 0.00 0.00 33.93 4.61
6529 10755 2.590114 GGTTGGTCCGTAGCAGGGT 61.590 63.158 0.00 0.00 33.93 4.34
6530 10756 2.267961 GGTTGGTCCGTAGCAGGG 59.732 66.667 0.00 0.00 33.93 4.45
6531 10757 1.079127 CAGGTTGGTCCGTAGCAGG 60.079 63.158 0.00 0.00 41.99 4.85
6532 10758 0.670546 CACAGGTTGGTCCGTAGCAG 60.671 60.000 0.00 0.00 41.99 4.24
6533 10759 1.369692 CACAGGTTGGTCCGTAGCA 59.630 57.895 0.00 0.00 41.99 3.49
6534 10760 1.375523 CCACAGGTTGGTCCGTAGC 60.376 63.158 0.00 0.00 41.10 3.58
6562 10788 1.055849 TTGAGGTTGTGCTGCTCCTA 58.944 50.000 0.00 0.00 0.00 2.94
6582 10808 0.683973 AGGATTGGAGATAGCGCTGG 59.316 55.000 22.90 0.00 0.00 4.85
6619 10845 1.271434 CCATAGCTGCAGATGCTGGAT 60.271 52.381 23.64 4.14 41.32 3.41
6651 10877 4.251246 AAGCGTGGAGGTTTTGCA 57.749 50.000 0.00 0.00 37.23 4.08
6656 10882 0.106918 TGGAACAAAGCGTGGAGGTT 60.107 50.000 0.00 0.00 43.26 3.50
6667 10893 1.339055 CCGAGGAGATGCTGGAACAAA 60.339 52.381 0.00 0.00 38.70 2.83
6682 10923 2.431954 TACTCAGGAAGGTACCGAGG 57.568 55.000 15.55 3.04 36.07 4.63
6683 10924 3.566322 CAGATACTCAGGAAGGTACCGAG 59.434 52.174 6.18 9.14 36.98 4.63
6684 10925 3.552875 CAGATACTCAGGAAGGTACCGA 58.447 50.000 6.18 0.00 34.73 4.69
6685 10926 2.034812 GCAGATACTCAGGAAGGTACCG 59.965 54.545 6.18 0.00 34.73 4.02
6686 10927 2.365941 GGCAGATACTCAGGAAGGTACC 59.634 54.545 2.73 2.73 0.00 3.34
6687 10928 2.365941 GGGCAGATACTCAGGAAGGTAC 59.634 54.545 0.00 0.00 0.00 3.34
6688 10929 2.023404 TGGGCAGATACTCAGGAAGGTA 60.023 50.000 0.00 0.00 0.00 3.08
6689 10930 1.273838 TGGGCAGATACTCAGGAAGGT 60.274 52.381 0.00 0.00 0.00 3.50
6690 10931 1.500474 TGGGCAGATACTCAGGAAGG 58.500 55.000 0.00 0.00 0.00 3.46
6691 10932 3.853355 ATTGGGCAGATACTCAGGAAG 57.147 47.619 0.00 0.00 0.00 3.46
6692 10933 4.591321 AAATTGGGCAGATACTCAGGAA 57.409 40.909 0.00 0.00 0.00 3.36
6693 10934 5.369404 TGATAAATTGGGCAGATACTCAGGA 59.631 40.000 0.00 0.00 0.00 3.86
6694 10935 5.624159 TGATAAATTGGGCAGATACTCAGG 58.376 41.667 0.00 0.00 0.00 3.86
6695 10936 7.572523 TTTGATAAATTGGGCAGATACTCAG 57.427 36.000 0.00 0.00 0.00 3.35
6696 10937 7.953005 TTTTGATAAATTGGGCAGATACTCA 57.047 32.000 0.00 0.00 0.00 3.41
6701 10942 9.059260 GCATTAATTTTGATAAATTGGGCAGAT 57.941 29.630 6.20 0.00 42.43 2.90
6756 11032 3.251004 GCAGTTTACCAAGTCTTCACCAG 59.749 47.826 0.00 0.00 0.00 4.00
6760 11036 7.446769 TGTATAAGCAGTTTACCAAGTCTTCA 58.553 34.615 0.00 0.00 0.00 3.02
6787 11063 4.908601 TCTGCTTCTTCCTGTCCATTTA 57.091 40.909 0.00 0.00 0.00 1.40
6866 11142 9.472361 GTAAACACATAAAACTGAGTCTGAGTA 57.528 33.333 3.76 0.00 0.00 2.59
6893 11173 5.233476 CGACTTGTCTTGCAAAAGTACACTA 59.767 40.000 13.58 0.00 36.53 2.74
6901 11181 3.428316 GGTTTCCGACTTGTCTTGCAAAA 60.428 43.478 0.00 0.00 36.53 2.44
6909 11189 2.249844 TTCCAGGTTTCCGACTTGTC 57.750 50.000 0.00 0.00 33.75 3.18
6916 11196 6.342906 TGTAAGTATGTATTCCAGGTTTCCG 58.657 40.000 0.00 0.00 0.00 4.30
6935 11215 7.308782 ACCAATCTTTTTCTCGCTATGTAAG 57.691 36.000 0.00 0.00 0.00 2.34
6936 11216 7.820386 TGTACCAATCTTTTTCTCGCTATGTAA 59.180 33.333 0.00 0.00 0.00 2.41
6937 11217 7.277098 GTGTACCAATCTTTTTCTCGCTATGTA 59.723 37.037 0.00 0.00 0.00 2.29
6938 11218 6.092259 GTGTACCAATCTTTTTCTCGCTATGT 59.908 38.462 0.00 0.00 0.00 2.29
6939 11219 6.092122 TGTGTACCAATCTTTTTCTCGCTATG 59.908 38.462 0.00 0.00 0.00 2.23
6940 11220 6.170506 TGTGTACCAATCTTTTTCTCGCTAT 58.829 36.000 0.00 0.00 0.00 2.97
6941 11221 5.543714 TGTGTACCAATCTTTTTCTCGCTA 58.456 37.500 0.00 0.00 0.00 4.26
6942 11222 4.385825 TGTGTACCAATCTTTTTCTCGCT 58.614 39.130 0.00 0.00 0.00 4.93
6943 11223 4.742438 TGTGTACCAATCTTTTTCTCGC 57.258 40.909 0.00 0.00 0.00 5.03
6944 11224 8.251750 TCTTATGTGTACCAATCTTTTTCTCG 57.748 34.615 0.00 0.00 0.00 4.04
6985 11265 5.526846 CCATTTCTCTCATGGCTCTTAACTC 59.473 44.000 0.00 0.00 34.98 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.