Multiple sequence alignment - TraesCS6D01G045800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G045800 chr6D 100.000 3074 0 0 1 3074 20603529 20600456 0.000000e+00 5677.0
1 TraesCS6D01G045800 chr6D 84.318 1473 214 13 681 2147 16242667 16244128 0.000000e+00 1424.0
2 TraesCS6D01G045800 chr6D 79.792 1539 287 19 672 2195 20312487 20310958 0.000000e+00 1098.0
3 TraesCS6D01G045800 chr6A 92.131 2999 169 32 1 2979 20523254 20520303 0.000000e+00 4169.0
4 TraesCS6D01G045800 chr6A 80.535 1233 226 10 971 2194 20310450 20309223 0.000000e+00 935.0
5 TraesCS6D01G045800 chr6A 90.476 63 1 4 2970 3027 20519035 20518973 9.140000e-11 78.7
6 TraesCS6D01G045800 chr6B 93.903 2575 120 15 505 3074 35529740 35527198 0.000000e+00 3851.0
7 TraesCS6D01G045800 chr6B 84.054 1248 194 5 903 2147 27992461 27991216 0.000000e+00 1197.0
8 TraesCS6D01G045800 chr6B 80.207 1546 268 29 672 2195 34341696 34340167 0.000000e+00 1125.0
9 TraesCS6D01G045800 chr6B 80.169 1301 231 16 907 2194 34685373 34684087 0.000000e+00 948.0
10 TraesCS6D01G045800 chr6B 82.014 139 22 2 2441 2576 51336422 51336284 6.970000e-22 115.0
11 TraesCS6D01G045800 chrUn 80.337 1541 275 21 672 2195 273854545 273856074 0.000000e+00 1142.0
12 TraesCS6D01G045800 chr5D 84.314 204 27 4 2437 2638 539019600 539019800 8.700000e-46 195.0
13 TraesCS6D01G045800 chr5D 100.000 29 0 0 176 204 9338138 9338110 2.000000e-03 54.7
14 TraesCS6D01G045800 chr5B 82.383 193 28 4 2434 2620 8901203 8901395 2.450000e-36 163.0
15 TraesCS6D01G045800 chr4B 78.295 258 47 5 310 560 79261982 79261727 1.140000e-34 158.0
16 TraesCS6D01G045800 chr1B 84.106 151 23 1 2442 2591 553144909 553144759 8.880000e-31 145.0
17 TraesCS6D01G045800 chr1A 84.106 151 23 1 2442 2591 506545510 506545360 8.880000e-31 145.0
18 TraesCS6D01G045800 chr7A 81.215 181 23 8 2436 2611 439809154 439809328 5.350000e-28 135.0
19 TraesCS6D01G045800 chr7D 94.737 57 3 0 2429 2485 389190473 389190529 4.220000e-14 89.8
20 TraesCS6D01G045800 chr7D 100.000 30 0 0 175 204 479658382 479658353 4.280000e-04 56.5
21 TraesCS6D01G045800 chr4D 91.379 58 5 0 2588 2645 26525562 26525619 2.540000e-11 80.5
22 TraesCS6D01G045800 chr4D 92.857 42 0 3 164 204 53499641 53499680 1.190000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G045800 chr6D 20600456 20603529 3073 True 5677.00 5677 100.0000 1 3074 1 chr6D.!!$R2 3073
1 TraesCS6D01G045800 chr6D 16242667 16244128 1461 False 1424.00 1424 84.3180 681 2147 1 chr6D.!!$F1 1466
2 TraesCS6D01G045800 chr6D 20310958 20312487 1529 True 1098.00 1098 79.7920 672 2195 1 chr6D.!!$R1 1523
3 TraesCS6D01G045800 chr6A 20518973 20523254 4281 True 2123.85 4169 91.3035 1 3027 2 chr6A.!!$R2 3026
4 TraesCS6D01G045800 chr6A 20309223 20310450 1227 True 935.00 935 80.5350 971 2194 1 chr6A.!!$R1 1223
5 TraesCS6D01G045800 chr6B 35527198 35529740 2542 True 3851.00 3851 93.9030 505 3074 1 chr6B.!!$R4 2569
6 TraesCS6D01G045800 chr6B 27991216 27992461 1245 True 1197.00 1197 84.0540 903 2147 1 chr6B.!!$R1 1244
7 TraesCS6D01G045800 chr6B 34340167 34341696 1529 True 1125.00 1125 80.2070 672 2195 1 chr6B.!!$R2 1523
8 TraesCS6D01G045800 chr6B 34684087 34685373 1286 True 948.00 948 80.1690 907 2194 1 chr6B.!!$R3 1287
9 TraesCS6D01G045800 chrUn 273854545 273856074 1529 False 1142.00 1142 80.3370 672 2195 1 chrUn.!!$F1 1523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 194 0.030504 TGTTCCATTGCAACGCACAG 59.969 50.0 0.00 0.0 38.71 3.66 F
439 450 0.034198 TCTGATGGTTCGCGGTTGAA 59.966 50.0 6.13 0.0 0.00 2.69 F
1857 1888 0.250770 GAGGTGTCTTTGTGGGTCCC 60.251 60.0 0.00 0.0 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1647 1675 0.323629 GGTGGTTAGTAGCTGTGGCA 59.676 55.000 0.0 0.0 41.70 4.92 R
1870 1901 1.065782 CACCGTCATTGTATGGGTCCA 60.066 52.381 0.0 0.0 0.00 4.02 R
3031 4360 2.910199 GCACATAGCATCTCTTGGACA 58.090 47.619 0.0 0.0 44.79 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.443390 GCCGGTGGCTAGGGAGTA 60.443 66.667 1.90 0.00 46.69 2.59
26 27 2.499827 GCCGGTGGCTAGGGAGTAG 61.500 68.421 1.90 0.00 46.69 2.57
34 35 2.721945 CTAGGGAGTAGCCACGAGG 58.278 63.158 0.00 0.00 38.95 4.63
35 36 0.183014 CTAGGGAGTAGCCACGAGGA 59.817 60.000 1.86 0.00 38.95 3.71
39 43 3.412879 GAGTAGCCACGAGGACCGC 62.413 68.421 1.86 0.00 43.32 5.68
41 45 2.117156 GTAGCCACGAGGACCGCTA 61.117 63.158 1.86 0.00 43.32 4.26
44 48 2.782222 GCCACGAGGACCGCTATGA 61.782 63.158 1.86 0.00 43.32 2.15
57 61 1.604185 CGCTATGAAGGCCACTAGCTC 60.604 57.143 5.01 0.00 43.05 4.09
59 63 2.042464 CTATGAAGGCCACTAGCTCCA 58.958 52.381 5.01 0.00 43.05 3.86
72 76 0.326264 AGCTCCAAGGGCAGTAAGTG 59.674 55.000 0.00 0.00 0.00 3.16
74 78 1.946283 GCTCCAAGGGCAGTAAGTGAC 60.946 57.143 0.00 0.00 0.00 3.67
122 126 3.094498 GGGAGGGCGTGGGGTTAT 61.094 66.667 0.00 0.00 0.00 1.89
123 127 2.192175 GGAGGGCGTGGGGTTATG 59.808 66.667 0.00 0.00 0.00 1.90
124 128 2.192175 GAGGGCGTGGGGTTATGG 59.808 66.667 0.00 0.00 0.00 2.74
125 129 3.415650 GAGGGCGTGGGGTTATGGG 62.416 68.421 0.00 0.00 0.00 4.00
140 144 1.293062 ATGGGGTCTTGAGTCATGCT 58.707 50.000 0.00 0.00 0.00 3.79
141 145 1.067295 TGGGGTCTTGAGTCATGCTT 58.933 50.000 0.00 0.00 0.00 3.91
146 150 3.307059 GGGTCTTGAGTCATGCTTACTGT 60.307 47.826 0.00 0.00 0.00 3.55
190 194 0.030504 TGTTCCATTGCAACGCACAG 59.969 50.000 0.00 0.00 38.71 3.66
231 235 7.743749 AGATTAGCACAGATGATGAAGGTAAT 58.256 34.615 0.00 0.00 40.40 1.89
232 236 8.874156 AGATTAGCACAGATGATGAAGGTAATA 58.126 33.333 0.00 0.00 39.18 0.98
233 237 9.494271 GATTAGCACAGATGATGAAGGTAATAA 57.506 33.333 0.00 0.00 39.18 1.40
255 259 9.741647 AATAAACAAAAGCTTCAAAGAAGAGAG 57.258 29.630 10.72 0.00 0.00 3.20
268 272 7.837863 TCAAAGAAGAGAGTACGGTGAATTAT 58.162 34.615 0.00 0.00 0.00 1.28
269 273 8.963725 TCAAAGAAGAGAGTACGGTGAATTATA 58.036 33.333 0.00 0.00 0.00 0.98
270 274 9.751542 CAAAGAAGAGAGTACGGTGAATTATAT 57.248 33.333 0.00 0.00 0.00 0.86
293 297 2.216750 CTCCCTTTGCAATGCACGGG 62.217 60.000 26.91 26.91 45.35 5.28
294 298 2.432972 CCTTTGCAATGCACGGGC 60.433 61.111 7.72 0.34 38.71 6.13
383 394 3.187637 GGCTTGTGTAGACGTTGCAAATA 59.812 43.478 0.00 0.00 0.00 1.40
394 405 2.091899 CGTTGCAAATAATTTGGGTGCG 59.908 45.455 0.00 0.00 40.94 5.34
398 409 2.353208 GCAAATAATTTGGGTGCGTCCA 60.353 45.455 0.00 0.00 40.94 4.02
409 420 1.197721 GGTGCGTCCAAAATCTCACAG 59.802 52.381 0.00 0.00 35.97 3.66
422 433 4.592485 ATCTCACAGTGAAGTCGTTTCT 57.408 40.909 4.41 0.00 36.71 2.52
432 443 1.429463 AGTCGTTTCTGATGGTTCGC 58.571 50.000 0.00 0.00 0.00 4.70
437 448 0.871722 TTTCTGATGGTTCGCGGTTG 59.128 50.000 6.13 0.00 0.00 3.77
439 450 0.034198 TCTGATGGTTCGCGGTTGAA 59.966 50.000 6.13 0.00 0.00 2.69
461 472 4.844998 TCTCGATCCAGAATAGAGCAAG 57.155 45.455 0.00 0.00 37.12 4.01
621 632 5.425630 ACGGGAGTTGAGAATATTTGTACC 58.574 41.667 0.00 0.00 43.33 3.34
636 647 0.725117 GTACCCTTATGCGTGTGTGC 59.275 55.000 0.00 0.00 0.00 4.57
655 666 4.632458 TGCTCGCGTGCGTGTGTA 62.632 61.111 25.83 6.59 40.74 2.90
656 667 3.179265 GCTCGCGTGCGTGTGTAT 61.179 61.111 18.06 0.00 40.74 2.29
657 668 2.689183 CTCGCGTGCGTGTGTATG 59.311 61.111 14.47 0.00 40.74 2.39
828 848 4.022329 CCAAATTTTCTAGTGGCGACCTTT 60.022 41.667 0.00 0.00 0.00 3.11
882 904 4.441913 CCGAGTTAACCGGGTATACACAAT 60.442 45.833 21.12 0.00 43.05 2.71
966 990 2.030717 CCACACTAGCCTGATAGCTACG 60.031 54.545 0.00 0.00 42.70 3.51
1023 1047 4.052608 TGTCAAGAGCAATTGCAACAATG 58.947 39.130 30.89 22.87 45.16 2.82
1039 1063 3.966979 ACAATGTTACTCATGGCCATCA 58.033 40.909 17.61 10.38 36.81 3.07
1253 1277 4.002906 GTGACACACCCTACAAGATGAA 57.997 45.455 0.00 0.00 0.00 2.57
1459 1486 2.226437 GCGGTGACAAATGTGAAGATGT 59.774 45.455 0.00 0.00 0.00 3.06
1462 1489 5.391950 GCGGTGACAAATGTGAAGATGTAAT 60.392 40.000 0.00 0.00 0.00 1.89
1647 1675 1.240641 TGATCAAACACCGCGGCATT 61.241 50.000 28.58 17.60 0.00 3.56
1663 1691 1.401905 GCATTGCCACAGCTACTAACC 59.598 52.381 0.00 0.00 40.80 2.85
1857 1888 0.250770 GAGGTGTCTTTGTGGGTCCC 60.251 60.000 0.00 0.00 0.00 4.46
1956 1987 7.574404 CGCATGCAATACTGGATCATAAAGAAT 60.574 37.037 19.57 0.00 29.85 2.40
2023 2057 2.070639 GGAGCTGGTTCCTCCAAGT 58.929 57.895 0.00 0.00 46.51 3.16
2184 2227 9.399797 TGATTTACATTCAATGAACAGCTAGAT 57.600 29.630 3.79 0.00 0.00 1.98
2201 2244 8.200792 ACAGCTAGATTTACTATTGACCAGAAG 58.799 37.037 0.00 0.00 0.00 2.85
2222 2265 6.263168 AGAAGATAAGGTGCATAAATTTCCGG 59.737 38.462 0.00 0.00 0.00 5.14
2439 2484 4.680278 TTTGGACTAGGGGAGTACTACA 57.320 45.455 7.57 0.00 40.13 2.74
2655 2700 9.851686 TGCAGTTAATCTTGGATACTATCAAAT 57.148 29.630 0.00 0.00 37.61 2.32
2711 2756 9.291664 GTGAAGACATAATGTAGACTAGTGTTC 57.708 37.037 0.00 0.00 0.00 3.18
2723 2768 6.518208 AGACTAGTGTTCTTTGCTAGGTAG 57.482 41.667 0.00 0.00 37.20 3.18
2724 2769 6.011481 AGACTAGTGTTCTTTGCTAGGTAGT 58.989 40.000 0.00 0.00 37.20 2.73
2763 2810 7.667043 TGTACAGTTTGATCTATGTTTCCAC 57.333 36.000 0.00 0.00 0.00 4.02
2849 2896 6.741992 TTCGCTAATGAAATGAACATCTGT 57.258 33.333 0.00 0.00 0.00 3.41
2852 2899 6.816140 TCGCTAATGAAATGAACATCTGTGTA 59.184 34.615 0.00 0.00 37.67 2.90
2902 2949 3.173965 CTTGGGTCCCACTTCTAGAGAA 58.826 50.000 11.24 0.00 30.78 2.87
3031 4360 5.482878 AGGTGAATTTTGATGAAGCAGGAAT 59.517 36.000 0.00 0.00 0.00 3.01
3063 4392 1.391485 GCTATGTGCACTGACTTCGTG 59.609 52.381 19.41 0.00 42.31 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.799371 CGGTCCTCGTGGCTACTC 59.201 66.667 0.00 0.00 0.00 2.59
22 23 2.547640 TAGCGGTCCTCGTGGCTACT 62.548 60.000 0.00 0.00 41.72 2.57
23 24 1.453762 ATAGCGGTCCTCGTGGCTAC 61.454 60.000 0.00 0.00 40.44 3.58
24 25 1.152819 ATAGCGGTCCTCGTGGCTA 60.153 57.895 0.00 0.00 41.70 3.93
25 26 2.442272 ATAGCGGTCCTCGTGGCT 60.442 61.111 0.00 0.00 41.72 4.75
26 27 2.279517 CATAGCGGTCCTCGTGGC 60.280 66.667 0.00 0.00 41.72 5.01
28 29 0.249073 CCTTCATAGCGGTCCTCGTG 60.249 60.000 0.00 0.00 41.72 4.35
29 30 2.017559 GCCTTCATAGCGGTCCTCGT 62.018 60.000 0.00 0.00 41.72 4.18
30 31 1.300233 GCCTTCATAGCGGTCCTCG 60.300 63.158 0.00 0.00 42.76 4.63
31 32 1.069935 GGCCTTCATAGCGGTCCTC 59.930 63.158 0.00 0.00 0.00 3.71
32 33 1.689233 TGGCCTTCATAGCGGTCCT 60.689 57.895 3.32 0.00 0.00 3.85
33 34 1.523938 GTGGCCTTCATAGCGGTCC 60.524 63.158 3.32 0.00 0.00 4.46
34 35 0.750850 TAGTGGCCTTCATAGCGGTC 59.249 55.000 3.32 0.00 0.00 4.79
35 36 0.753262 CTAGTGGCCTTCATAGCGGT 59.247 55.000 3.32 0.00 0.00 5.68
39 43 2.042464 TGGAGCTAGTGGCCTTCATAG 58.958 52.381 3.32 1.98 43.05 2.23
41 45 1.211457 CTTGGAGCTAGTGGCCTTCAT 59.789 52.381 3.32 0.00 43.05 2.57
44 48 1.566298 CCCTTGGAGCTAGTGGCCTT 61.566 60.000 3.32 0.00 43.05 4.35
57 61 1.880027 GTTGTCACTTACTGCCCTTGG 59.120 52.381 0.00 0.00 0.00 3.61
59 63 2.572290 GTGTTGTCACTTACTGCCCTT 58.428 47.619 0.00 0.00 40.98 3.95
72 76 0.039527 GGTGCCCAAATCGTGTTGTC 60.040 55.000 1.28 0.00 0.00 3.18
74 78 0.602562 ATGGTGCCCAAATCGTGTTG 59.397 50.000 0.00 0.00 36.95 3.33
115 119 1.212195 GACTCAAGACCCCATAACCCC 59.788 57.143 0.00 0.00 0.00 4.95
120 124 2.481441 AGCATGACTCAAGACCCCATA 58.519 47.619 0.00 0.00 0.00 2.74
121 125 1.293062 AGCATGACTCAAGACCCCAT 58.707 50.000 0.00 0.00 0.00 4.00
122 126 1.067295 AAGCATGACTCAAGACCCCA 58.933 50.000 0.00 0.00 0.00 4.96
123 127 2.237392 AGTAAGCATGACTCAAGACCCC 59.763 50.000 0.00 0.00 0.00 4.95
124 128 3.265791 CAGTAAGCATGACTCAAGACCC 58.734 50.000 0.00 0.00 0.00 4.46
125 129 3.681897 CACAGTAAGCATGACTCAAGACC 59.318 47.826 0.00 0.00 0.00 3.85
174 178 2.918345 GCCTGTGCGTTGCAATGGA 61.918 57.895 19.93 14.92 41.47 3.41
175 179 2.431260 GCCTGTGCGTTGCAATGG 60.431 61.111 19.93 8.34 41.47 3.16
190 194 1.303309 ATCTCGCTAGCAAACATGCC 58.697 50.000 16.45 0.00 34.90 4.40
207 211 7.976135 ATTACCTTCATCATCTGTGCTAATC 57.024 36.000 0.00 0.00 0.00 1.75
231 235 8.281212 ACTCTCTTCTTTGAAGCTTTTGTTTA 57.719 30.769 0.00 0.00 0.00 2.01
232 236 7.163001 ACTCTCTTCTTTGAAGCTTTTGTTT 57.837 32.000 0.00 0.00 0.00 2.83
233 237 6.765915 ACTCTCTTCTTTGAAGCTTTTGTT 57.234 33.333 0.00 0.00 0.00 2.83
239 243 3.574826 ACCGTACTCTCTTCTTTGAAGCT 59.425 43.478 2.71 0.00 0.00 3.74
253 257 8.968969 AGGGAGAATATATAATTCACCGTACTC 58.031 37.037 7.37 0.00 38.92 2.59
255 259 9.939802 AAAGGGAGAATATATAATTCACCGTAC 57.060 33.333 8.95 0.00 38.92 3.67
268 272 4.275689 CGTGCATTGCAAAGGGAGAATATA 59.724 41.667 13.94 0.00 41.47 0.86
269 273 3.067180 CGTGCATTGCAAAGGGAGAATAT 59.933 43.478 13.94 0.00 41.47 1.28
270 274 2.423185 CGTGCATTGCAAAGGGAGAATA 59.577 45.455 13.94 0.00 41.47 1.75
271 275 1.203052 CGTGCATTGCAAAGGGAGAAT 59.797 47.619 13.94 0.00 41.47 2.40
272 276 0.597568 CGTGCATTGCAAAGGGAGAA 59.402 50.000 13.94 0.00 41.47 2.87
394 405 4.084328 CGACTTCACTGTGAGATTTTGGAC 60.084 45.833 10.77 0.00 0.00 4.02
398 409 5.817816 AGAAACGACTTCACTGTGAGATTTT 59.182 36.000 10.77 7.44 36.40 1.82
409 420 3.120991 CGAACCATCAGAAACGACTTCAC 60.121 47.826 0.00 0.00 36.40 3.18
422 433 1.083489 GATTCAACCGCGAACCATCA 58.917 50.000 8.23 0.00 0.00 3.07
432 443 2.871182 TCTGGATCGAGATTCAACCG 57.129 50.000 2.91 0.00 0.00 4.44
437 448 5.384063 TGCTCTATTCTGGATCGAGATTC 57.616 43.478 8.37 0.00 31.01 2.52
439 450 5.076182 TCTTGCTCTATTCTGGATCGAGAT 58.924 41.667 8.37 2.20 31.01 2.75
570 581 9.774742 CCTAAGAGTTGCAGAATAAATTGTAAC 57.225 33.333 0.00 0.00 39.30 2.50
621 632 1.132436 CACGCACACACGCATAAGG 59.868 57.895 0.00 0.00 36.19 2.69
828 848 2.040813 AGTAGTAGACCGAACCACAGGA 59.959 50.000 0.00 0.00 0.00 3.86
882 904 1.004862 TCGTGGTGCATGGGGAATTTA 59.995 47.619 0.00 0.00 0.00 1.40
966 990 5.438761 AATGGTTGCTTTGAGTGTCTTAC 57.561 39.130 0.00 0.00 0.00 2.34
1003 1027 4.325028 ACATTGTTGCAATTGCTCTTGA 57.675 36.364 29.37 13.08 42.66 3.02
1459 1486 2.305607 AAGCCCCGCACCCTCATTA 61.306 57.895 0.00 0.00 0.00 1.90
1647 1675 0.323629 GGTGGTTAGTAGCTGTGGCA 59.676 55.000 0.00 0.00 41.70 4.92
1663 1691 1.958579 CTCATGGGCAACATATGGGTG 59.041 52.381 7.80 6.01 37.84 4.61
1857 1888 1.256812 GGGTCCAATTTGTCCCACAG 58.743 55.000 16.89 0.00 39.68 3.66
1870 1901 1.065782 CACCGTCATTGTATGGGTCCA 60.066 52.381 0.00 0.00 0.00 4.02
2023 2057 1.207488 AGGATGCCACACAAGCCCTA 61.207 55.000 0.00 0.00 0.00 3.53
2184 2227 7.769044 GCACCTTATCTTCTGGTCAATAGTAAA 59.231 37.037 0.00 0.00 30.72 2.01
2201 2244 6.385649 TTCCGGAAATTTATGCACCTTATC 57.614 37.500 16.28 0.00 0.00 1.75
2366 2409 8.386606 GTCAAACTTGTGCATATTTGTCAAAAA 58.613 29.630 1.31 0.00 34.40 1.94
2367 2410 7.763528 AGTCAAACTTGTGCATATTTGTCAAAA 59.236 29.630 1.31 0.00 34.40 2.44
2368 2411 7.264221 AGTCAAACTTGTGCATATTTGTCAAA 58.736 30.769 0.00 0.00 34.40 2.69
2655 2700 1.141645 GTACGTGCACGAACATCCAA 58.858 50.000 42.94 15.51 43.02 3.53
2723 2768 3.686128 TGTACAAACAACGACATTGCAC 58.314 40.909 0.00 0.00 42.62 4.57
2724 2769 3.375610 ACTGTACAAACAACGACATTGCA 59.624 39.130 0.00 0.00 42.62 4.08
2849 2896 7.362056 GCTGCTTTTTCTTGAGGATAACATACA 60.362 37.037 0.00 0.00 0.00 2.29
2852 2899 5.713861 AGCTGCTTTTTCTTGAGGATAACAT 59.286 36.000 0.00 0.00 0.00 2.71
2902 2949 7.149202 ACATATGTGGGGTGTTGTTATATCT 57.851 36.000 7.78 0.00 0.00 1.98
3031 4360 2.910199 GCACATAGCATCTCTTGGACA 58.090 47.619 0.00 0.00 44.79 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.