Multiple sequence alignment - TraesCS6D01G043700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G043700 chr6D 100.000 3635 0 0 1 3635 18095187 18091553 0.000000e+00 6713.0
1 TraesCS6D01G043700 chr6D 89.375 160 16 1 3476 3635 367539820 367539662 2.210000e-47 200.0
2 TraesCS6D01G043700 chr6D 88.750 160 18 0 3476 3635 367319805 367319646 2.860000e-46 196.0
3 TraesCS6D01G043700 chr6D 91.339 127 7 2 3352 3478 18053568 18053446 1.740000e-38 171.0
4 TraesCS6D01G043700 chr6D 91.339 127 7 2 3352 3478 18165649 18165527 1.740000e-38 171.0
5 TraesCS6D01G043700 chr6D 85.535 159 14 5 717 870 18096861 18096707 1.350000e-34 158.0
6 TraesCS6D01G043700 chr6D 88.281 128 12 3 3348 3475 17887965 17888089 2.260000e-32 150.0
7 TraesCS6D01G043700 chr6D 88.732 71 5 3 2687 2757 18092200 18092133 2.330000e-12 84.2
8 TraesCS6D01G043700 chr6D 88.732 71 5 3 2988 3055 18092501 18092431 2.330000e-12 84.2
9 TraesCS6D01G043700 chr6D 87.143 70 7 2 10 77 91083952 91083883 1.080000e-10 78.7
10 TraesCS6D01G043700 chr2B 90.583 3090 252 22 1 3071 7774406 7771337 0.000000e+00 4058.0
11 TraesCS6D01G043700 chr2B 88.659 1693 144 17 1693 3357 7881704 7880032 0.000000e+00 2019.0
12 TraesCS6D01G043700 chr2B 90.800 250 20 2 3103 3349 7771340 7771091 7.520000e-87 331.0
13 TraesCS6D01G043700 chr2B 87.975 158 19 0 3478 3635 797730023 797729866 1.720000e-43 187.0
14 TraesCS6D01G043700 chr2B 82.723 191 19 7 685 870 7774819 7774638 1.350000e-34 158.0
15 TraesCS6D01G043700 chr2B 88.000 75 6 3 2687 2760 7880424 7880352 6.470000e-13 86.1
16 TraesCS6D01G043700 chr2B 88.732 71 5 3 2687 2757 7771417 7771350 2.330000e-12 84.2
17 TraesCS6D01G043700 chr2B 88.060 67 5 3 2992 3056 7880720 7880655 3.890000e-10 76.8
18 TraesCS6D01G043700 chr2B 86.957 69 6 3 2988 3054 7771717 7771650 1.400000e-09 75.0
19 TraesCS6D01G043700 chr2B 78.125 96 13 7 25 116 90570543 90570452 2.000000e-03 54.7
20 TraesCS6D01G043700 chr2D 90.215 1860 155 5 894 2751 2908795 2910629 0.000000e+00 2401.0
21 TraesCS6D01G043700 chr2D 85.027 1496 159 41 354 1814 2823285 2824750 0.000000e+00 1461.0
22 TraesCS6D01G043700 chr2D 85.714 882 76 23 1 865 2907984 2908832 0.000000e+00 885.0
23 TraesCS6D01G043700 chr2D 88.125 640 39 11 2744 3350 2911907 2912542 0.000000e+00 726.0
24 TraesCS6D01G043700 chr2D 83.158 190 26 6 682 870 2906242 2906426 6.240000e-38 169.0
25 TraesCS6D01G043700 chr2D 89.394 66 5 2 2989 3052 2910566 2910631 8.370000e-12 82.4
26 TraesCS6D01G043700 chr2D 87.324 71 6 3 2687 2757 2912156 2912223 1.080000e-10 78.7
27 TraesCS6D01G043700 chr2D 96.875 32 1 0 17 48 32175013 32175044 2.000000e-03 54.7
28 TraesCS6D01G043700 chr2A 91.160 1742 126 9 960 2680 2760512 2758778 0.000000e+00 2338.0
29 TraesCS6D01G043700 chr2A 93.800 629 30 7 2727 3349 2758800 2758175 0.000000e+00 937.0
30 TraesCS6D01G043700 chr7D 89.542 153 15 1 3483 3635 624777490 624777641 3.700000e-45 193.0
31 TraesCS6D01G043700 chr7D 88.535 157 18 0 3479 3635 575484433 575484277 1.330000e-44 191.0
32 TraesCS6D01G043700 chr7D 88.961 154 17 0 3481 3634 591864927 591864774 1.330000e-44 191.0
33 TraesCS6D01G043700 chr1D 88.272 162 18 1 3475 3635 456253043 456253204 3.700000e-45 193.0
34 TraesCS6D01G043700 chr1B 88.535 157 18 0 3479 3635 643936409 643936253 1.330000e-44 191.0
35 TraesCS6D01G043700 chr3D 88.462 156 18 0 3480 3635 479051469 479051624 4.790000e-44 189.0
36 TraesCS6D01G043700 chr6B 89.062 128 11 3 3348 3475 32165283 32165407 4.860000e-34 156.0
37 TraesCS6D01G043700 chrUn 87.121 132 10 2 3348 3475 385670124 385670252 3.780000e-30 143.0
38 TraesCS6D01G043700 chrUn 87.121 132 10 2 3348 3475 385671219 385671347 3.780000e-30 143.0
39 TraesCS6D01G043700 chrUn 86.364 132 11 2 3348 3475 385670672 385670800 1.760000e-28 137.0
40 TraesCS6D01G043700 chrUn 89.655 58 6 0 218 275 384176386 384176329 1.400000e-09 75.0
41 TraesCS6D01G043700 chrUn 89.655 58 6 0 215 272 475877303 475877360 1.400000e-09 75.0
42 TraesCS6D01G043700 chr6A 87.121 132 10 2 3348 3475 18650446 18650574 3.780000e-30 143.0
43 TraesCS6D01G043700 chr6A 87.121 132 10 2 3348 3475 18650995 18651123 3.780000e-30 143.0
44 TraesCS6D01G043700 chr1A 100.000 32 0 0 17 48 104429712 104429743 3.920000e-05 60.2
45 TraesCS6D01G043700 chr5D 100.000 29 0 0 2186 2214 549325062 549325090 2.000000e-03 54.7
46 TraesCS6D01G043700 chr4A 100.000 29 0 0 2186 2214 620952034 620952062 2.000000e-03 54.7
47 TraesCS6D01G043700 chr5A 82.812 64 5 5 21 80 653944393 653944332 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G043700 chr6D 18091553 18095187 3634 True 2293.800000 6713 92.488000 1 3635 3 chr6D.!!$R7 3634
1 TraesCS6D01G043700 chr2B 7771091 7774819 3728 True 941.240000 4058 87.959000 1 3349 5 chr2B.!!$R3 3348
2 TraesCS6D01G043700 chr2B 7880032 7881704 1672 True 727.300000 2019 88.239667 1693 3357 3 chr2B.!!$R4 1664
3 TraesCS6D01G043700 chr2D 2823285 2824750 1465 False 1461.000000 1461 85.027000 354 1814 1 chr2D.!!$F1 1460
4 TraesCS6D01G043700 chr2D 2906242 2912542 6300 False 723.683333 2401 87.321667 1 3350 6 chr2D.!!$F3 3349
5 TraesCS6D01G043700 chr2A 2758175 2760512 2337 True 1637.500000 2338 92.480000 960 3349 2 chr2A.!!$R1 2389

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
420 2168 0.322816 ACACCATGTAGCCCAAGCAG 60.323 55.0 0.0 0.0 43.56 4.24 F
897 2701 0.472471 AGAAAGGGAGTGGCGTGAAA 59.528 50.0 0.0 0.0 0.00 2.69 F
1616 3501 0.036732 GAGGATGTGGTGGACTTGCA 59.963 55.0 0.0 0.0 0.00 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1458 3343 0.111253 ATTCCAAGATGGGCCGGATC 59.889 55.0 5.05 0.00 38.32 3.36 R
1786 3671 1.148310 AACTGGCGTTGAACGATCTG 58.852 50.0 23.12 17.03 46.05 2.90 R
3372 6594 0.106708 TCAGTTTTGACCGCTCTGCT 59.893 50.0 0.00 0.00 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 1768 0.742505 TTGTCTCTCGAACCGTGTGT 59.257 50.000 0.00 0.00 0.00 3.72
48 1791 4.339530 TCCAAATCATGAACCGTTTTCACA 59.660 37.500 0.00 0.00 0.00 3.58
52 1795 7.383572 CCAAATCATGAACCGTTTTCACAATTA 59.616 33.333 0.00 0.00 0.00 1.40
83 1826 5.077424 CGCGTCCAGTTTTAAAACTACATC 58.923 41.667 28.43 17.75 46.89 3.06
95 1838 3.582998 AACTACATCCCCATGGTGATG 57.417 47.619 29.24 29.24 43.16 3.07
136 1880 4.098914 TGGGAAAATGTTGTAGTGCTCT 57.901 40.909 0.00 0.00 0.00 4.09
178 1922 3.673746 TCAAAACTGAACTGTGCTTCG 57.326 42.857 0.00 0.00 0.00 3.79
187 1932 1.286880 CTGTGCTTCGCTTTTGGGG 59.713 57.895 0.00 0.00 0.00 4.96
192 1937 1.586541 CTTCGCTTTTGGGGGAAGC 59.413 57.895 8.00 0.00 44.76 3.86
202 1947 1.204146 TGGGGGAAGCACAGATCTAC 58.796 55.000 0.00 0.00 0.00 2.59
210 1955 5.649831 GGGAAGCACAGATCTACTTTTTCAT 59.350 40.000 0.00 0.00 0.00 2.57
216 1961 5.349817 CACAGATCTACTTTTTCATGCGAGT 59.650 40.000 0.00 0.00 0.00 4.18
218 1963 6.754209 ACAGATCTACTTTTTCATGCGAGTAG 59.246 38.462 0.00 13.71 41.72 2.57
257 2002 4.722203 CGGAAGCACATCTATGATTCAC 57.278 45.455 6.15 0.00 44.91 3.18
264 2009 6.860080 AGCACATCTATGATTCACTTTTTGG 58.140 36.000 0.00 0.00 0.00 3.28
415 2163 2.969821 AAAAGACACCATGTAGCCCA 57.030 45.000 0.00 0.00 0.00 5.36
420 2168 0.322816 ACACCATGTAGCCCAAGCAG 60.323 55.000 0.00 0.00 43.56 4.24
469 2244 9.688091 TTGCACTAATATTTTCCTTATGTACCA 57.312 29.630 0.00 0.00 0.00 3.25
470 2245 9.860650 TGCACTAATATTTTCCTTATGTACCAT 57.139 29.630 0.00 0.00 0.00 3.55
482 2257 9.921637 TTCCTTATGTACCATTTTCATTGTTTC 57.078 29.630 0.00 0.00 0.00 2.78
483 2258 9.308000 TCCTTATGTACCATTTTCATTGTTTCT 57.692 29.630 0.00 0.00 0.00 2.52
487 2262 7.222000 TGTACCATTTTCATTGTTTCTACCC 57.778 36.000 0.00 0.00 0.00 3.69
506 2281 7.670364 TCTACCCACATATGTGTCATAATCTG 58.330 38.462 29.25 13.69 44.21 2.90
568 2344 2.662309 GGTACTGACCGGACTGGAA 58.338 57.895 9.46 0.00 42.00 3.53
592 2368 1.289830 TCAGGATTCCCCTCCTCGTTA 59.710 52.381 0.00 0.00 45.60 3.18
606 2382 4.752879 GTTAGCGGCCGCCAGACA 62.753 66.667 44.47 22.89 43.17 3.41
673 2461 2.103263 CCGACAAGAAATAGGGGAGGAG 59.897 54.545 0.00 0.00 0.00 3.69
679 2473 4.635558 AGAAATAGGGGAGGAGAAGACT 57.364 45.455 0.00 0.00 0.00 3.24
683 2477 6.384595 AGAAATAGGGGAGGAGAAGACTTAAC 59.615 42.308 0.00 0.00 0.00 2.01
733 2529 6.403200 CGTTTTCAATGTTCCTACCCACATAG 60.403 42.308 0.00 0.00 33.11 2.23
787 2583 6.625532 TTCCTAGCATGCATGGAGATATTA 57.374 37.500 27.34 11.44 0.00 0.98
793 2589 9.425577 CTAGCATGCATGGAGATATTAGATATG 57.574 37.037 27.34 0.00 0.00 1.78
794 2590 7.225011 AGCATGCATGGAGATATTAGATATGG 58.775 38.462 27.34 0.00 0.00 2.74
795 2591 6.996879 GCATGCATGGAGATATTAGATATGGT 59.003 38.462 27.34 0.00 0.00 3.55
796 2592 7.041303 GCATGCATGGAGATATTAGATATGGTG 60.041 40.741 27.34 0.00 0.00 4.17
797 2593 6.351711 TGCATGGAGATATTAGATATGGTGC 58.648 40.000 0.00 0.00 0.00 5.01
798 2594 6.157471 TGCATGGAGATATTAGATATGGTGCT 59.843 38.462 0.00 0.00 0.00 4.40
799 2595 7.345392 TGCATGGAGATATTAGATATGGTGCTA 59.655 37.037 0.00 0.00 0.00 3.49
837 2641 8.633075 ATGAAATTAAAATATGTGAAGCGTGG 57.367 30.769 0.00 0.00 0.00 4.94
863 2667 2.428544 TGGTGTGCCAACTTGTAAGT 57.571 45.000 0.00 0.00 42.83 2.24
864 2668 2.020720 TGGTGTGCCAACTTGTAAGTG 58.979 47.619 0.00 0.00 42.83 3.16
865 2669 2.021457 GGTGTGCCAACTTGTAAGTGT 58.979 47.619 0.00 0.00 39.66 3.55
866 2670 2.223479 GGTGTGCCAACTTGTAAGTGTG 60.223 50.000 0.00 0.21 39.66 3.82
867 2671 2.422127 GTGTGCCAACTTGTAAGTGTGT 59.578 45.455 0.00 0.00 39.66 3.72
875 2679 5.583061 CCAACTTGTAAGTGTGTGAGTGTTA 59.417 40.000 0.00 0.00 39.66 2.41
885 2689 4.452455 GTGTGTGAGTGTTATGAGAAAGGG 59.548 45.833 0.00 0.00 0.00 3.95
897 2701 0.472471 AGAAAGGGAGTGGCGTGAAA 59.528 50.000 0.00 0.00 0.00 2.69
1107 2992 5.337169 CCGAAAGAGAGTTTCTTCTCCTCAT 60.337 44.000 0.00 0.00 45.41 2.90
1110 2995 3.699038 AGAGAGTTTCTTCTCCTCATCCG 59.301 47.826 0.00 0.00 43.74 4.18
1186 3071 2.410687 CGCAACAACCCACACACCA 61.411 57.895 0.00 0.00 0.00 4.17
1188 3073 1.599606 GCAACAACCCACACACCACA 61.600 55.000 0.00 0.00 0.00 4.17
1306 3191 2.657297 GCCCTTGCCAAGAATGACA 58.343 52.632 5.89 0.00 0.00 3.58
1395 3280 1.065410 TCCTTCCAAGCTCCAACCCA 61.065 55.000 0.00 0.00 0.00 4.51
1415 3300 3.050275 GTGGAAGCAGGACCGTGC 61.050 66.667 6.59 6.59 44.35 5.34
1443 3328 1.599047 CGCCCACTTCTCATCCAGT 59.401 57.895 0.00 0.00 0.00 4.00
1458 3343 4.003788 AGTCGGGGCTTGGACACG 62.004 66.667 0.00 0.00 35.63 4.49
1485 3370 1.116308 CCATCTTGGAATGCCATGCA 58.884 50.000 0.00 0.00 45.46 3.96
1489 3374 0.974010 CTTGGAATGCCATGCAGGGT 60.974 55.000 20.22 0.00 45.46 4.34
1616 3501 0.036732 GAGGATGTGGTGGACTTGCA 59.963 55.000 0.00 0.00 0.00 4.08
1647 3532 0.482887 CCCAACCTTTCAGGGGACTT 59.517 55.000 0.00 0.00 43.57 3.01
1648 3533 1.620822 CCAACCTTTCAGGGGACTTG 58.379 55.000 0.00 0.00 40.58 3.16
1659 3544 1.373812 GGGACTTGTAGTGCCGGTT 59.626 57.895 1.90 0.00 46.68 4.44
1680 3565 4.720649 TCTAGAGGAGTGGTCAAAATCG 57.279 45.455 0.00 0.00 0.00 3.34
1703 3588 0.460987 GTCTCTGACGCCTTCCCATG 60.461 60.000 0.00 0.00 0.00 3.66
1704 3589 1.153289 CTCTGACGCCTTCCCATGG 60.153 63.158 4.14 4.14 0.00 3.66
1712 3597 2.046023 CTTCCCATGGCTCGCACA 60.046 61.111 6.09 0.00 0.00 4.57
1713 3598 2.046023 TTCCCATGGCTCGCACAG 60.046 61.111 6.09 0.00 0.00 3.66
1786 3671 5.310720 ACTGTTCAACTTCTTTGACCAAC 57.689 39.130 0.00 0.00 44.28 3.77
1802 3687 0.865111 CAACAGATCGTTCAACGCCA 59.135 50.000 4.63 0.00 42.21 5.69
1809 3694 0.249531 TCGTTCAACGCCAGTTAGCA 60.250 50.000 4.63 0.00 42.21 3.49
1814 3699 2.566913 TCAACGCCAGTTAGCAAGAAA 58.433 42.857 0.00 0.00 38.79 2.52
1827 3712 1.815003 GCAAGAAATGGCACTAGCACT 59.185 47.619 0.00 0.00 44.61 4.40
1828 3713 3.009723 GCAAGAAATGGCACTAGCACTA 58.990 45.455 0.00 0.00 44.61 2.74
1829 3714 3.440173 GCAAGAAATGGCACTAGCACTAA 59.560 43.478 0.00 0.00 44.61 2.24
1875 3760 4.456253 GACGTTCTCCTCGCGCGA 62.456 66.667 32.60 32.60 0.00 5.87
1933 3818 2.159627 ACGTTCCTAACAGTACGTACGG 59.840 50.000 21.95 21.95 44.44 4.02
1937 3822 2.742053 TCCTAACAGTACGTACGGTCAC 59.258 50.000 27.64 13.83 33.56 3.67
2094 3988 3.604582 CCACCCAGAGAAGATGAAGAAC 58.395 50.000 0.00 0.00 0.00 3.01
2130 4024 1.825090 CAGCATGCCTTGGAGTTACA 58.175 50.000 15.66 0.00 0.00 2.41
2289 4183 0.266453 TCCCCATCCCTATCGGAACA 59.734 55.000 0.00 0.00 46.47 3.18
2417 4311 1.073199 ACTTTCAGGGCAAGGACGG 59.927 57.895 0.00 0.00 0.00 4.79
2420 4314 2.748058 TTTCAGGGCAAGGACGGCTC 62.748 60.000 0.00 0.00 0.00 4.70
2436 4332 4.097418 ACGGCTCTATCTATAGGCCATTT 58.903 43.478 20.21 0.00 42.16 2.32
2520 4416 1.268539 GCCTCACTTGTCCACAAAACG 60.269 52.381 0.00 0.00 35.15 3.60
2607 4503 2.738643 GCTGAATCTTGCTACGCCACTA 60.739 50.000 0.00 0.00 0.00 2.74
2639 4535 2.660552 GTCCACCGTGTGACGTGG 60.661 66.667 0.00 2.22 40.58 4.94
2646 4542 1.565156 CCGTGTGACGTGGATGGTTG 61.565 60.000 0.00 0.00 40.58 3.77
2706 4604 9.823647 CCTATATATCAATAATCTTGCGGACTT 57.176 33.333 0.00 0.00 0.00 3.01
2745 4643 8.478066 AGATGCTATTATCTGCCGACATATTTA 58.522 33.333 0.00 0.00 36.12 1.40
2877 6067 3.677601 CTCAGCAATACAACAAGCGATG 58.322 45.455 0.00 0.00 0.00 3.84
2900 6090 3.535561 CACCAATTGTCTCCTCGCTAAT 58.464 45.455 4.43 0.00 0.00 1.73
3100 6290 8.779354 AGTTCAACTAGTCCAACAAGAATATC 57.221 34.615 15.69 0.00 0.00 1.63
3109 6299 5.463724 GTCCAACAAGAATATCGGCTTAGAG 59.536 44.000 0.00 0.00 0.00 2.43
3158 6373 8.579863 CAGGGAAATCACCTATTCCATAAATTC 58.420 37.037 6.85 0.00 45.64 2.17
3192 6414 9.973450 TTTAATCATTTCACCATCTTTTTCGAA 57.027 25.926 0.00 0.00 0.00 3.71
3195 6417 6.980593 TCATTTCACCATCTTTTTCGAACAT 58.019 32.000 0.00 0.00 0.00 2.71
3252 6474 9.139174 CCAGTTGGATTTTAACACAATGATTAC 57.861 33.333 0.00 0.00 37.39 1.89
3336 6558 2.223066 CGGTGCAAGTTTGTTTACGTCA 60.223 45.455 0.00 0.00 0.00 4.35
3350 6572 2.606961 CGTCATGTGCAACGCCACT 61.607 57.895 0.00 0.00 42.39 4.00
3351 6573 1.081906 GTCATGTGCAACGCCACTG 60.082 57.895 0.00 0.91 42.39 3.66
3352 6574 2.429571 CATGTGCAACGCCACTGC 60.430 61.111 0.00 0.00 42.39 4.40
3356 6578 4.317359 TGCAACGCCACTGCATAT 57.683 50.000 0.00 0.00 44.67 1.78
3357 6579 1.801983 TGCAACGCCACTGCATATG 59.198 52.632 0.00 0.00 44.67 1.78
3358 6580 0.959867 TGCAACGCCACTGCATATGT 60.960 50.000 4.29 0.00 44.67 2.29
3359 6581 0.171007 GCAACGCCACTGCATATGTT 59.829 50.000 4.29 0.00 39.69 2.71
3360 6582 1.795162 GCAACGCCACTGCATATGTTC 60.795 52.381 4.29 0.00 39.69 3.18
3361 6583 1.468127 CAACGCCACTGCATATGTTCA 59.532 47.619 4.29 0.00 37.32 3.18
3362 6584 2.042686 ACGCCACTGCATATGTTCAT 57.957 45.000 4.29 0.00 37.32 2.57
3363 6585 2.368439 ACGCCACTGCATATGTTCATT 58.632 42.857 4.29 0.00 37.32 2.57
3364 6586 2.754552 ACGCCACTGCATATGTTCATTT 59.245 40.909 4.29 0.00 37.32 2.32
3365 6587 3.944650 ACGCCACTGCATATGTTCATTTA 59.055 39.130 4.29 0.00 37.32 1.40
3366 6588 4.397730 ACGCCACTGCATATGTTCATTTAA 59.602 37.500 4.29 0.00 37.32 1.52
3367 6589 5.105957 ACGCCACTGCATATGTTCATTTAAA 60.106 36.000 4.29 0.00 37.32 1.52
3368 6590 5.978919 CGCCACTGCATATGTTCATTTAAAT 59.021 36.000 4.29 0.00 37.32 1.40
3369 6591 6.476380 CGCCACTGCATATGTTCATTTAAATT 59.524 34.615 4.29 0.00 37.32 1.82
3370 6592 7.306167 CGCCACTGCATATGTTCATTTAAATTC 60.306 37.037 4.29 0.00 37.32 2.17
3371 6593 7.492020 GCCACTGCATATGTTCATTTAAATTCA 59.508 33.333 4.29 0.00 37.47 2.57
3372 6594 9.368674 CCACTGCATATGTTCATTTAAATTCAA 57.631 29.630 4.29 0.00 0.00 2.69
3374 6596 9.090692 ACTGCATATGTTCATTTAAATTCAAGC 57.909 29.630 4.29 5.89 0.00 4.01
3375 6597 8.999220 TGCATATGTTCATTTAAATTCAAGCA 57.001 26.923 4.29 7.90 0.00 3.91
3376 6598 9.089601 TGCATATGTTCATTTAAATTCAAGCAG 57.910 29.630 4.29 0.00 0.00 4.24
3377 6599 9.304731 GCATATGTTCATTTAAATTCAAGCAGA 57.695 29.630 4.29 0.00 0.00 4.26
3379 6601 7.823149 ATGTTCATTTAAATTCAAGCAGAGC 57.177 32.000 0.00 0.00 0.00 4.09
3380 6602 5.858049 TGTTCATTTAAATTCAAGCAGAGCG 59.142 36.000 0.00 0.00 0.00 5.03
3381 6603 4.985413 TCATTTAAATTCAAGCAGAGCGG 58.015 39.130 0.00 0.00 0.00 5.52
3382 6604 4.458989 TCATTTAAATTCAAGCAGAGCGGT 59.541 37.500 0.00 0.00 0.00 5.68
3383 6605 4.419522 TTTAAATTCAAGCAGAGCGGTC 57.580 40.909 6.48 6.48 0.00 4.79
3384 6606 1.896220 AAATTCAAGCAGAGCGGTCA 58.104 45.000 18.15 0.00 0.00 4.02
3385 6607 1.896220 AATTCAAGCAGAGCGGTCAA 58.104 45.000 18.15 1.01 0.00 3.18
3386 6608 1.896220 ATTCAAGCAGAGCGGTCAAA 58.104 45.000 18.15 1.62 0.00 2.69
3387 6609 1.674359 TTCAAGCAGAGCGGTCAAAA 58.326 45.000 18.15 0.00 0.00 2.44
3388 6610 0.944386 TCAAGCAGAGCGGTCAAAAC 59.056 50.000 18.15 2.77 0.00 2.43
3389 6611 0.947244 CAAGCAGAGCGGTCAAAACT 59.053 50.000 18.15 5.18 0.00 2.66
3390 6612 0.947244 AAGCAGAGCGGTCAAAACTG 59.053 50.000 18.15 6.91 34.66 3.16
3391 6613 0.106708 AGCAGAGCGGTCAAAACTGA 59.893 50.000 18.15 0.00 33.20 3.41
3392 6614 1.160137 GCAGAGCGGTCAAAACTGAT 58.840 50.000 18.15 0.00 33.20 2.90
3393 6615 1.135859 GCAGAGCGGTCAAAACTGATG 60.136 52.381 18.15 4.64 33.20 3.07
3394 6616 2.146342 CAGAGCGGTCAAAACTGATGT 58.854 47.619 18.15 0.00 33.20 3.06
3395 6617 2.549754 CAGAGCGGTCAAAACTGATGTT 59.450 45.455 18.15 0.00 38.16 2.71
3396 6618 2.808543 AGAGCGGTCAAAACTGATGTTC 59.191 45.455 18.15 0.00 34.96 3.18
3397 6619 2.808543 GAGCGGTCAAAACTGATGTTCT 59.191 45.455 10.30 0.00 34.96 3.01
3398 6620 2.549754 AGCGGTCAAAACTGATGTTCTG 59.450 45.455 0.00 0.00 34.96 3.02
3399 6621 2.350772 GCGGTCAAAACTGATGTTCTGG 60.351 50.000 0.00 0.00 34.96 3.86
3400 6622 2.226437 CGGTCAAAACTGATGTTCTGGG 59.774 50.000 0.00 0.00 34.96 4.45
3401 6623 3.486383 GGTCAAAACTGATGTTCTGGGA 58.514 45.455 0.00 0.00 34.96 4.37
3402 6624 3.888930 GGTCAAAACTGATGTTCTGGGAA 59.111 43.478 0.00 0.00 34.96 3.97
3403 6625 4.340950 GGTCAAAACTGATGTTCTGGGAAA 59.659 41.667 0.00 0.00 34.96 3.13
3404 6626 5.163457 GGTCAAAACTGATGTTCTGGGAAAA 60.163 40.000 0.00 0.00 34.96 2.29
3405 6627 6.337356 GTCAAAACTGATGTTCTGGGAAAAA 58.663 36.000 0.00 0.00 34.96 1.94
3424 6646 4.623932 AAAACTCTAGTGATGGTGCTGA 57.376 40.909 0.00 0.00 0.00 4.26
3425 6647 4.623932 AAACTCTAGTGATGGTGCTGAA 57.376 40.909 0.00 0.00 0.00 3.02
3426 6648 3.883830 ACTCTAGTGATGGTGCTGAAG 57.116 47.619 0.00 0.00 0.00 3.02
3427 6649 2.499289 ACTCTAGTGATGGTGCTGAAGG 59.501 50.000 0.00 0.00 0.00 3.46
3428 6650 2.762887 CTCTAGTGATGGTGCTGAAGGA 59.237 50.000 0.00 0.00 0.00 3.36
3429 6651 3.378512 TCTAGTGATGGTGCTGAAGGAT 58.621 45.455 0.00 0.00 0.00 3.24
3430 6652 2.414994 AGTGATGGTGCTGAAGGATG 57.585 50.000 0.00 0.00 0.00 3.51
3431 6653 0.737219 GTGATGGTGCTGAAGGATGC 59.263 55.000 0.00 0.00 0.00 3.91
3432 6654 0.622136 TGATGGTGCTGAAGGATGCT 59.378 50.000 0.00 0.00 0.00 3.79
3433 6655 1.005097 TGATGGTGCTGAAGGATGCTT 59.995 47.619 0.00 0.00 0.00 3.91
3434 6656 1.404391 GATGGTGCTGAAGGATGCTTG 59.596 52.381 3.35 0.00 0.00 4.01
3435 6657 0.609957 TGGTGCTGAAGGATGCTTGG 60.610 55.000 3.35 0.00 0.00 3.61
3436 6658 0.322816 GGTGCTGAAGGATGCTTGGA 60.323 55.000 3.35 0.00 0.00 3.53
3437 6659 0.807496 GTGCTGAAGGATGCTTGGAC 59.193 55.000 3.35 0.00 0.00 4.02
3438 6660 0.694771 TGCTGAAGGATGCTTGGACT 59.305 50.000 3.35 0.00 0.00 3.85
3439 6661 1.093159 GCTGAAGGATGCTTGGACTG 58.907 55.000 3.35 0.00 0.00 3.51
3440 6662 1.339438 GCTGAAGGATGCTTGGACTGA 60.339 52.381 3.35 0.00 0.00 3.41
3441 6663 2.683152 GCTGAAGGATGCTTGGACTGAT 60.683 50.000 3.35 0.00 0.00 2.90
3442 6664 3.618351 CTGAAGGATGCTTGGACTGATT 58.382 45.455 3.35 0.00 0.00 2.57
3443 6665 4.015084 CTGAAGGATGCTTGGACTGATTT 58.985 43.478 3.35 0.00 0.00 2.17
3444 6666 5.178096 TGAAGGATGCTTGGACTGATTTA 57.822 39.130 3.35 0.00 0.00 1.40
3445 6667 5.569355 TGAAGGATGCTTGGACTGATTTAA 58.431 37.500 3.35 0.00 0.00 1.52
3446 6668 5.415701 TGAAGGATGCTTGGACTGATTTAAC 59.584 40.000 3.35 0.00 0.00 2.01
3447 6669 5.184892 AGGATGCTTGGACTGATTTAACT 57.815 39.130 0.00 0.00 0.00 2.24
3448 6670 4.946157 AGGATGCTTGGACTGATTTAACTG 59.054 41.667 0.00 0.00 0.00 3.16
3449 6671 4.096984 GGATGCTTGGACTGATTTAACTGG 59.903 45.833 0.00 0.00 0.00 4.00
3450 6672 3.420893 TGCTTGGACTGATTTAACTGGG 58.579 45.455 0.00 0.00 0.00 4.45
3451 6673 3.073798 TGCTTGGACTGATTTAACTGGGA 59.926 43.478 0.00 0.00 0.00 4.37
3452 6674 3.440522 GCTTGGACTGATTTAACTGGGAC 59.559 47.826 0.00 0.00 0.00 4.46
3453 6675 4.807643 GCTTGGACTGATTTAACTGGGACT 60.808 45.833 0.00 0.00 0.00 3.85
3454 6676 5.570844 GCTTGGACTGATTTAACTGGGACTA 60.571 44.000 0.00 0.00 0.00 2.59
3455 6677 5.416271 TGGACTGATTTAACTGGGACTAC 57.584 43.478 0.00 0.00 0.00 2.73
3456 6678 5.091552 TGGACTGATTTAACTGGGACTACT 58.908 41.667 0.00 0.00 0.00 2.57
3457 6679 5.046591 TGGACTGATTTAACTGGGACTACTG 60.047 44.000 0.00 0.00 0.00 2.74
3458 6680 5.046520 GGACTGATTTAACTGGGACTACTGT 60.047 44.000 0.00 0.00 0.00 3.55
3459 6681 6.154021 GGACTGATTTAACTGGGACTACTGTA 59.846 42.308 0.00 0.00 0.00 2.74
3460 6682 7.171630 ACTGATTTAACTGGGACTACTGTAG 57.828 40.000 13.13 13.13 0.00 2.74
3461 6683 6.154706 ACTGATTTAACTGGGACTACTGTAGG 59.845 42.308 18.38 3.51 0.00 3.18
3462 6684 6.021030 TGATTTAACTGGGACTACTGTAGGT 58.979 40.000 18.38 4.11 0.00 3.08
3463 6685 5.990120 TTTAACTGGGACTACTGTAGGTC 57.010 43.478 18.38 12.57 0.00 3.85
3464 6686 3.537795 AACTGGGACTACTGTAGGTCA 57.462 47.619 18.38 11.76 34.49 4.02
3465 6687 3.537795 ACTGGGACTACTGTAGGTCAA 57.462 47.619 18.38 3.69 34.49 3.18
3466 6688 3.163467 ACTGGGACTACTGTAGGTCAAC 58.837 50.000 18.38 10.40 34.49 3.18
3467 6689 3.162666 CTGGGACTACTGTAGGTCAACA 58.837 50.000 18.38 13.36 34.49 3.33
3468 6690 3.576982 CTGGGACTACTGTAGGTCAACAA 59.423 47.826 18.38 0.00 34.49 2.83
3469 6691 3.322828 TGGGACTACTGTAGGTCAACAAC 59.677 47.826 18.38 1.85 34.49 3.32
3470 6692 3.322828 GGGACTACTGTAGGTCAACAACA 59.677 47.826 18.38 0.00 34.49 3.33
3471 6693 4.020485 GGGACTACTGTAGGTCAACAACAT 60.020 45.833 18.38 0.00 34.49 2.71
3472 6694 4.929808 GGACTACTGTAGGTCAACAACATG 59.070 45.833 18.38 0.00 34.49 3.21
3473 6695 5.510861 GGACTACTGTAGGTCAACAACATGT 60.511 44.000 18.38 0.00 34.49 3.21
3474 6696 6.294899 GGACTACTGTAGGTCAACAACATGTA 60.295 42.308 18.38 0.00 34.49 2.29
3475 6697 7.058023 ACTACTGTAGGTCAACAACATGTAA 57.942 36.000 18.38 0.00 0.00 2.41
3476 6698 7.676947 ACTACTGTAGGTCAACAACATGTAAT 58.323 34.615 18.38 0.00 0.00 1.89
3477 6699 8.809066 ACTACTGTAGGTCAACAACATGTAATA 58.191 33.333 18.38 0.00 0.00 0.98
3478 6700 9.647797 CTACTGTAGGTCAACAACATGTAATAA 57.352 33.333 6.95 0.00 0.00 1.40
3479 6701 8.319143 ACTGTAGGTCAACAACATGTAATAAC 57.681 34.615 0.00 0.00 0.00 1.89
3480 6702 7.934665 ACTGTAGGTCAACAACATGTAATAACA 59.065 33.333 0.00 0.00 40.69 2.41
3482 6704 9.290988 TGTAGGTCAACAACATGTAATAACATT 57.709 29.630 0.00 0.00 44.07 2.71
3485 6707 9.515226 AGGTCAACAACATGTAATAACATTAGT 57.485 29.630 0.00 0.00 44.07 2.24
3511 6733 5.373981 AAAAACACCTTACGTGAAACACA 57.626 34.783 0.00 0.00 46.20 3.72
3512 6734 5.570234 AAAACACCTTACGTGAAACACAT 57.430 34.783 0.00 0.00 46.20 3.21
3513 6735 5.570234 AAACACCTTACGTGAAACACATT 57.430 34.783 0.00 0.00 46.20 2.71
3514 6736 6.680874 AAACACCTTACGTGAAACACATTA 57.319 33.333 0.00 0.00 46.20 1.90
3515 6737 5.917541 ACACCTTACGTGAAACACATTAG 57.082 39.130 0.00 0.00 46.20 1.73
3516 6738 5.362263 ACACCTTACGTGAAACACATTAGT 58.638 37.500 0.00 0.00 46.20 2.24
3517 6739 5.464389 ACACCTTACGTGAAACACATTAGTC 59.536 40.000 0.00 0.00 46.20 2.59
3518 6740 4.992951 ACCTTACGTGAAACACATTAGTCC 59.007 41.667 0.00 0.00 35.74 3.85
3519 6741 4.390909 CCTTACGTGAAACACATTAGTCCC 59.609 45.833 0.00 0.00 35.74 4.46
3520 6742 2.409975 ACGTGAAACACATTAGTCCCG 58.590 47.619 0.00 0.00 35.74 5.14
3521 6743 2.224113 ACGTGAAACACATTAGTCCCGT 60.224 45.455 0.00 0.00 35.74 5.28
3522 6744 2.803956 CGTGAAACACATTAGTCCCGTT 59.196 45.455 0.00 0.00 35.74 4.44
3523 6745 3.249080 CGTGAAACACATTAGTCCCGTTT 59.751 43.478 0.00 0.00 35.74 3.60
3524 6746 4.609783 CGTGAAACACATTAGTCCCGTTTC 60.610 45.833 0.00 0.00 43.55 2.78
3525 6747 3.495377 TGAAACACATTAGTCCCGTTTCG 59.505 43.478 0.00 0.00 45.27 3.46
3526 6748 3.389925 AACACATTAGTCCCGTTTCGA 57.610 42.857 0.00 0.00 0.00 3.71
3527 6749 3.604875 ACACATTAGTCCCGTTTCGAT 57.395 42.857 0.00 0.00 0.00 3.59
3528 6750 3.934068 ACACATTAGTCCCGTTTCGATT 58.066 40.909 0.00 0.00 0.00 3.34
3529 6751 4.320870 ACACATTAGTCCCGTTTCGATTT 58.679 39.130 0.00 0.00 0.00 2.17
3530 6752 4.758165 ACACATTAGTCCCGTTTCGATTTT 59.242 37.500 0.00 0.00 0.00 1.82
3531 6753 5.086058 CACATTAGTCCCGTTTCGATTTTG 58.914 41.667 0.00 0.00 0.00 2.44
3532 6754 4.155280 ACATTAGTCCCGTTTCGATTTTGG 59.845 41.667 0.00 0.00 0.00 3.28
3533 6755 0.879090 AGTCCCGTTTCGATTTTGGC 59.121 50.000 0.00 0.00 0.00 4.52
3534 6756 0.109458 GTCCCGTTTCGATTTTGGCC 60.109 55.000 0.00 0.00 0.00 5.36
3535 6757 0.250989 TCCCGTTTCGATTTTGGCCT 60.251 50.000 3.32 0.00 0.00 5.19
3536 6758 0.109319 CCCGTTTCGATTTTGGCCTG 60.109 55.000 3.32 0.00 0.00 4.85
3537 6759 0.109319 CCGTTTCGATTTTGGCCTGG 60.109 55.000 3.32 0.00 0.00 4.45
3538 6760 0.596082 CGTTTCGATTTTGGCCTGGT 59.404 50.000 3.32 0.00 0.00 4.00
3539 6761 1.807742 CGTTTCGATTTTGGCCTGGTA 59.192 47.619 3.32 0.00 0.00 3.25
3540 6762 2.413634 CGTTTCGATTTTGGCCTGGTAC 60.414 50.000 3.32 0.00 0.00 3.34
3541 6763 2.817844 GTTTCGATTTTGGCCTGGTACT 59.182 45.455 3.32 0.00 0.00 2.73
3542 6764 3.985019 TTCGATTTTGGCCTGGTACTA 57.015 42.857 3.32 0.00 0.00 1.82
3543 6765 3.985019 TCGATTTTGGCCTGGTACTAA 57.015 42.857 3.32 0.00 0.00 2.24
3544 6766 4.497291 TCGATTTTGGCCTGGTACTAAT 57.503 40.909 3.32 0.00 0.00 1.73
3545 6767 4.196193 TCGATTTTGGCCTGGTACTAATG 58.804 43.478 3.32 0.00 0.00 1.90
3546 6768 3.315191 CGATTTTGGCCTGGTACTAATGG 59.685 47.826 3.32 0.00 0.00 3.16
3547 6769 3.818295 TTTTGGCCTGGTACTAATGGT 57.182 42.857 3.32 0.00 0.00 3.55
3548 6770 4.931027 TTTTGGCCTGGTACTAATGGTA 57.069 40.909 3.32 0.00 0.00 3.25
3562 6784 2.185663 ATGGTACCATTAGTCCCGGT 57.814 50.000 22.23 0.00 36.79 5.28
3563 6785 1.955451 TGGTACCATTAGTCCCGGTT 58.045 50.000 11.60 0.00 34.12 4.44
3564 6786 1.832998 TGGTACCATTAGTCCCGGTTC 59.167 52.381 11.60 0.00 34.12 3.62
3565 6787 1.202452 GGTACCATTAGTCCCGGTTCG 60.202 57.143 7.15 0.00 34.12 3.95
3566 6788 1.750778 GTACCATTAGTCCCGGTTCGA 59.249 52.381 0.00 0.00 34.12 3.71
3567 6789 1.269012 ACCATTAGTCCCGGTTCGAA 58.731 50.000 0.00 0.00 0.00 3.71
3568 6790 1.066645 ACCATTAGTCCCGGTTCGAAC 60.067 52.381 20.14 20.14 0.00 3.95
3569 6791 1.274596 CATTAGTCCCGGTTCGAACG 58.725 55.000 21.34 15.88 0.00 3.95
3575 6797 3.700961 CCGGTTCGAACGGCTATG 58.299 61.111 25.58 11.66 45.34 2.23
3576 6798 2.522638 CCGGTTCGAACGGCTATGC 61.523 63.158 25.58 8.97 45.34 3.14
3577 6799 1.807981 CGGTTCGAACGGCTATGCA 60.808 57.895 21.34 0.00 0.00 3.96
3578 6800 1.151777 CGGTTCGAACGGCTATGCAT 61.152 55.000 21.34 3.79 0.00 3.96
3579 6801 1.014352 GGTTCGAACGGCTATGCATT 58.986 50.000 21.34 0.00 0.00 3.56
3580 6802 2.206750 GGTTCGAACGGCTATGCATTA 58.793 47.619 21.34 0.00 0.00 1.90
3581 6803 2.221055 GGTTCGAACGGCTATGCATTAG 59.779 50.000 21.34 1.51 0.00 1.73
3582 6804 2.864343 GTTCGAACGGCTATGCATTAGT 59.136 45.455 13.36 0.00 0.00 2.24
3583 6805 2.739292 TCGAACGGCTATGCATTAGTC 58.261 47.619 3.54 0.95 0.00 2.59
3584 6806 1.792949 CGAACGGCTATGCATTAGTCC 59.207 52.381 3.54 0.17 0.00 3.85
3585 6807 2.545952 CGAACGGCTATGCATTAGTCCT 60.546 50.000 3.54 0.00 0.00 3.85
3586 6808 2.533266 ACGGCTATGCATTAGTCCTG 57.467 50.000 3.54 0.00 0.00 3.86
3587 6809 1.070758 ACGGCTATGCATTAGTCCTGG 59.929 52.381 3.54 0.00 0.00 4.45
3588 6810 1.070758 CGGCTATGCATTAGTCCTGGT 59.929 52.381 3.54 0.00 0.00 4.00
3589 6811 2.485479 CGGCTATGCATTAGTCCTGGTT 60.485 50.000 3.54 0.00 0.00 3.67
3590 6812 3.142174 GGCTATGCATTAGTCCTGGTTC 58.858 50.000 3.54 0.00 0.00 3.62
3591 6813 3.433598 GGCTATGCATTAGTCCTGGTTCA 60.434 47.826 3.54 0.00 0.00 3.18
3592 6814 4.392940 GCTATGCATTAGTCCTGGTTCAT 58.607 43.478 3.54 0.00 0.00 2.57
3593 6815 4.823989 GCTATGCATTAGTCCTGGTTCATT 59.176 41.667 3.54 0.00 0.00 2.57
3594 6816 5.300286 GCTATGCATTAGTCCTGGTTCATTT 59.700 40.000 3.54 0.00 0.00 2.32
3595 6817 5.587388 ATGCATTAGTCCTGGTTCATTTG 57.413 39.130 0.00 0.00 0.00 2.32
3596 6818 4.406456 TGCATTAGTCCTGGTTCATTTGT 58.594 39.130 0.00 0.00 0.00 2.83
3597 6819 4.218200 TGCATTAGTCCTGGTTCATTTGTG 59.782 41.667 0.00 0.00 0.00 3.33
3598 6820 4.458989 GCATTAGTCCTGGTTCATTTGTGA 59.541 41.667 0.00 0.00 0.00 3.58
3599 6821 5.619981 GCATTAGTCCTGGTTCATTTGTGAC 60.620 44.000 0.00 0.00 0.00 3.67
3600 6822 2.863809 AGTCCTGGTTCATTTGTGACC 58.136 47.619 0.00 0.00 0.00 4.02
3601 6823 2.443255 AGTCCTGGTTCATTTGTGACCT 59.557 45.455 0.00 0.00 0.00 3.85
3602 6824 3.650942 AGTCCTGGTTCATTTGTGACCTA 59.349 43.478 0.00 0.00 0.00 3.08
3603 6825 3.751698 GTCCTGGTTCATTTGTGACCTAC 59.248 47.826 0.00 0.00 0.00 3.18
3604 6826 3.392947 TCCTGGTTCATTTGTGACCTACA 59.607 43.478 0.00 0.00 37.56 2.74
3605 6827 3.753272 CCTGGTTCATTTGTGACCTACAG 59.247 47.826 0.00 0.00 41.10 2.74
3606 6828 4.389374 CTGGTTCATTTGTGACCTACAGT 58.611 43.478 0.00 0.00 41.10 3.55
3607 6829 4.385825 TGGTTCATTTGTGACCTACAGTC 58.614 43.478 0.00 0.00 46.51 3.51
3608 6830 3.751698 GGTTCATTTGTGACCTACAGTCC 59.248 47.826 0.00 0.00 45.68 3.85
3609 6831 3.695830 TCATTTGTGACCTACAGTCCC 57.304 47.619 0.00 0.00 45.68 4.46
3610 6832 2.028476 TCATTTGTGACCTACAGTCCCG 60.028 50.000 0.00 0.00 45.68 5.14
3611 6833 0.682852 TTTGTGACCTACAGTCCCGG 59.317 55.000 0.00 0.00 45.68 5.73
3612 6834 0.470456 TTGTGACCTACAGTCCCGGT 60.470 55.000 0.00 0.00 45.68 5.28
3613 6835 0.470456 TGTGACCTACAGTCCCGGTT 60.470 55.000 0.00 0.00 45.68 4.44
3614 6836 0.683412 GTGACCTACAGTCCCGGTTT 59.317 55.000 0.00 0.00 45.68 3.27
3615 6837 0.682852 TGACCTACAGTCCCGGTTTG 59.317 55.000 0.00 0.00 45.68 2.93
3616 6838 0.683412 GACCTACAGTCCCGGTTTGT 59.317 55.000 0.00 4.24 39.84 2.83
3617 6839 0.395312 ACCTACAGTCCCGGTTTGTG 59.605 55.000 0.00 0.00 0.00 3.33
3618 6840 0.395312 CCTACAGTCCCGGTTTGTGT 59.605 55.000 0.00 0.62 0.00 3.72
3619 6841 1.607251 CCTACAGTCCCGGTTTGTGTC 60.607 57.143 0.00 0.00 0.00 3.67
3620 6842 1.069513 CTACAGTCCCGGTTTGTGTCA 59.930 52.381 0.00 0.00 0.00 3.58
3621 6843 0.463116 ACAGTCCCGGTTTGTGTCAC 60.463 55.000 0.00 0.00 0.00 3.67
3622 6844 0.462937 CAGTCCCGGTTTGTGTCACA 60.463 55.000 0.18 0.18 0.00 3.58
3623 6845 0.253610 AGTCCCGGTTTGTGTCACAA 59.746 50.000 14.48 14.48 36.11 3.33
3624 6846 1.096416 GTCCCGGTTTGTGTCACAAA 58.904 50.000 24.05 24.05 44.91 2.83
3632 6854 2.684001 TTGTGTCACAAACCGAGACT 57.316 45.000 16.05 0.00 34.76 3.24
3633 6855 3.804786 TTGTGTCACAAACCGAGACTA 57.195 42.857 16.05 0.00 34.76 2.59
3634 6856 3.804786 TGTGTCACAAACCGAGACTAA 57.195 42.857 2.31 0.00 36.30 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.223971 ACACACGGTTCGAGAGACAAAT 60.224 45.455 0.00 0.00 41.84 2.32
8 1751 0.386985 GGACACACGGTTCGAGAGAC 60.387 60.000 0.00 0.00 41.84 3.36
14 1757 1.222300 TGATTTGGACACACGGTTCG 58.778 50.000 0.00 0.00 0.00 3.95
25 1768 4.339530 TGTGAAAACGGTTCATGATTTGGA 59.660 37.500 0.00 0.00 0.00 3.53
48 1791 2.093658 ACTGGACGCGAGGAACATAATT 60.094 45.455 15.93 0.00 0.00 1.40
52 1795 0.034896 AAACTGGACGCGAGGAACAT 59.965 50.000 15.93 0.00 0.00 2.71
95 1838 5.184287 TCCCAATAAAGATTCGTTGAAACCC 59.816 40.000 0.00 0.00 0.00 4.11
136 1880 4.605640 AGCACGGGTTACTACTGTTTTA 57.394 40.909 0.00 0.00 0.00 1.52
146 1890 2.614983 TCAGTTTTGAAGCACGGGTTAC 59.385 45.455 0.00 0.00 0.00 2.50
187 1932 6.549952 CATGAAAAAGTAGATCTGTGCTTCC 58.450 40.000 5.18 2.26 0.00 3.46
192 1937 5.349817 ACTCGCATGAAAAAGTAGATCTGTG 59.650 40.000 5.18 0.00 0.00 3.66
216 1961 1.288419 CGTGACGCATGGTTGTGCTA 61.288 55.000 0.00 0.00 42.88 3.49
218 1963 2.127270 CGTGACGCATGGTTGTGC 60.127 61.111 0.00 0.00 41.65 4.57
230 1975 0.457853 TAGATGTGCTTCCGCGTGAC 60.458 55.000 4.92 0.00 39.65 3.67
237 1982 6.690194 AAAGTGAATCATAGATGTGCTTCC 57.310 37.500 0.00 0.00 0.00 3.46
272 2017 2.698274 TCCTCGCATGGAAGCATAACTA 59.302 45.455 0.00 0.00 32.39 2.24
296 2041 8.865793 CTTTCCTAAAAGTGGAGCACAGTTGC 62.866 46.154 2.73 0.00 41.82 4.17
464 2239 7.088272 GTGGGTAGAAACAATGAAAATGGTAC 58.912 38.462 0.00 0.00 0.00 3.34
465 2240 6.778069 TGTGGGTAGAAACAATGAAAATGGTA 59.222 34.615 0.00 0.00 0.00 3.25
466 2241 5.600484 TGTGGGTAGAAACAATGAAAATGGT 59.400 36.000 0.00 0.00 0.00 3.55
467 2242 6.095432 TGTGGGTAGAAACAATGAAAATGG 57.905 37.500 0.00 0.00 0.00 3.16
468 2243 9.304731 CATATGTGGGTAGAAACAATGAAAATG 57.695 33.333 0.00 0.00 0.00 2.32
469 2244 9.034800 ACATATGTGGGTAGAAACAATGAAAAT 57.965 29.630 7.78 0.00 0.00 1.82
470 2245 8.303156 CACATATGTGGGTAGAAACAATGAAAA 58.697 33.333 25.41 0.00 42.10 2.29
471 2246 7.825681 CACATATGTGGGTAGAAACAATGAAA 58.174 34.615 25.41 0.00 42.10 2.69
472 2247 7.389803 CACATATGTGGGTAGAAACAATGAA 57.610 36.000 25.41 0.00 42.10 2.57
506 2281 2.061773 CGCGGGTATGATCATCACTTC 58.938 52.381 12.53 0.00 0.00 3.01
535 2311 6.111382 GGTCAGTACCTTAGGTTATGGTTTC 58.889 44.000 10.01 1.95 43.08 2.78
563 2339 0.462759 GGGAATCCTGACGCTTCCAG 60.463 60.000 0.00 0.00 40.20 3.86
606 2382 2.443016 CCTCCGCTCTACCTGCCT 60.443 66.667 0.00 0.00 0.00 4.75
635 2411 1.559682 TCGGCTAGGGCAAATTCTCTT 59.440 47.619 0.00 0.00 40.87 2.85
673 2461 9.989869 GGAAAATATTAGTGCAGTTAAGTCTTC 57.010 33.333 0.00 0.00 0.00 2.87
679 2473 8.832521 CGGTATGGAAAATATTAGTGCAGTTAA 58.167 33.333 0.00 0.00 0.00 2.01
683 2477 5.334879 GCCGGTATGGAAAATATTAGTGCAG 60.335 44.000 1.90 0.00 42.00 4.41
733 2529 5.904080 GTCATTGCTTTAGATTATGACACGC 59.096 40.000 0.00 0.00 42.75 5.34
787 2583 3.947834 GGCAACAAGTTAGCACCATATCT 59.052 43.478 8.73 0.00 0.00 1.98
793 2589 3.756434 TCATTAGGCAACAAGTTAGCACC 59.244 43.478 8.73 0.00 41.41 5.01
794 2590 5.371115 TTCATTAGGCAACAAGTTAGCAC 57.629 39.130 8.73 0.00 41.41 4.40
795 2591 6.588719 ATTTCATTAGGCAACAAGTTAGCA 57.411 33.333 8.73 0.00 41.41 3.49
796 2592 8.980143 TTAATTTCATTAGGCAACAAGTTAGC 57.020 30.769 0.00 0.00 41.41 3.09
860 2664 5.760253 CCTTTCTCATAACACTCACACACTT 59.240 40.000 0.00 0.00 0.00 3.16
862 2666 4.452455 CCCTTTCTCATAACACTCACACAC 59.548 45.833 0.00 0.00 0.00 3.82
863 2667 4.346709 TCCCTTTCTCATAACACTCACACA 59.653 41.667 0.00 0.00 0.00 3.72
864 2668 4.894784 TCCCTTTCTCATAACACTCACAC 58.105 43.478 0.00 0.00 0.00 3.82
865 2669 4.593206 ACTCCCTTTCTCATAACACTCACA 59.407 41.667 0.00 0.00 0.00 3.58
866 2670 4.932200 CACTCCCTTTCTCATAACACTCAC 59.068 45.833 0.00 0.00 0.00 3.51
867 2671 4.020218 CCACTCCCTTTCTCATAACACTCA 60.020 45.833 0.00 0.00 0.00 3.41
875 2679 0.036010 CACGCCACTCCCTTTCTCAT 60.036 55.000 0.00 0.00 0.00 2.90
885 2689 3.047877 CCCCGTTTCACGCCACTC 61.048 66.667 0.00 0.00 40.91 3.51
897 2701 4.265056 GCACCAGGTGAACCCCGT 62.265 66.667 24.96 0.00 35.23 5.28
908 2712 3.414700 GACAAGTCGGCGCACCAG 61.415 66.667 10.83 0.00 34.57 4.00
963 2839 2.611292 GCTGTATGGAGAGTGCAATCAC 59.389 50.000 17.53 10.20 43.44 3.06
1038 2923 3.817084 CCATATGAATGGTGATCAGCGTT 59.183 43.478 27.78 27.78 46.68 4.84
1188 3073 4.742649 TGAGCGAGGGAGGCGAGT 62.743 66.667 0.00 0.00 35.00 4.18
1395 3280 2.140792 ACGGTCCTGCTTCCACAGT 61.141 57.895 0.00 0.00 35.83 3.55
1430 3315 1.617947 GCCCCGACTGGATGAGAAGT 61.618 60.000 0.00 0.00 37.49 3.01
1437 3322 2.285368 TCCAAGCCCCGACTGGAT 60.285 61.111 0.00 0.00 37.49 3.41
1443 3328 3.000819 ATCGTGTCCAAGCCCCGA 61.001 61.111 0.00 0.00 0.00 5.14
1458 3343 0.111253 ATTCCAAGATGGGCCGGATC 59.889 55.000 5.05 0.00 38.32 3.36
1489 3374 2.160205 CCTCAAGTACTCGGTGAGACA 58.840 52.381 20.08 0.00 41.08 3.41
1566 3451 5.628130 AGGATGTTGGATATGACATTGAGG 58.372 41.667 0.00 0.00 36.67 3.86
1647 3532 1.005097 TCCTCTAGAACCGGCACTACA 59.995 52.381 0.00 0.00 0.00 2.74
1648 3533 1.677052 CTCCTCTAGAACCGGCACTAC 59.323 57.143 0.00 0.00 0.00 2.73
1659 3544 4.341487 TCGATTTTGACCACTCCTCTAGA 58.659 43.478 0.00 0.00 0.00 2.43
1703 3588 1.375908 TGGTCAATCTGTGCGAGCC 60.376 57.895 0.00 0.00 0.00 4.70
1704 3589 1.639298 GGTGGTCAATCTGTGCGAGC 61.639 60.000 0.00 0.00 0.00 5.03
1712 3597 1.617947 GCCGAGGAGGTGGTCAATCT 61.618 60.000 0.00 0.00 43.70 2.40
1713 3598 1.153349 GCCGAGGAGGTGGTCAATC 60.153 63.158 0.00 0.00 43.70 2.67
1786 3671 1.148310 AACTGGCGTTGAACGATCTG 58.852 50.000 23.12 17.03 46.05 2.90
1802 3687 3.691609 GCTAGTGCCATTTCTTGCTAACT 59.308 43.478 0.00 0.00 31.84 2.24
1809 3694 4.641989 CCATTAGTGCTAGTGCCATTTCTT 59.358 41.667 0.00 0.00 38.71 2.52
1814 3699 1.212688 TGCCATTAGTGCTAGTGCCAT 59.787 47.619 0.00 0.00 38.71 4.40
1827 3712 4.576873 TCGTTGTTTTTCTCACTGCCATTA 59.423 37.500 0.00 0.00 0.00 1.90
1828 3713 3.380004 TCGTTGTTTTTCTCACTGCCATT 59.620 39.130 0.00 0.00 0.00 3.16
1829 3714 2.948979 TCGTTGTTTTTCTCACTGCCAT 59.051 40.909 0.00 0.00 0.00 4.40
1842 3727 1.758319 CGTCCAGCACGTCGTTGTTT 61.758 55.000 0.00 0.00 44.07 2.83
1875 3760 1.672356 GAGCTTGGACATGGCGTGT 60.672 57.895 13.11 13.11 45.83 4.49
1933 3818 5.485662 AAGCAAAACAAGTACTCAGTGAC 57.514 39.130 0.00 0.00 0.00 3.67
2002 3887 1.616374 TGCGGCGATGAACATATCCTA 59.384 47.619 12.98 0.00 0.00 2.94
2130 4024 3.648067 TCTCCTTGACAAAGTCACTGGAT 59.352 43.478 16.30 0.00 42.60 3.41
2280 4174 1.324740 CCACGACCCCTGTTCCGATA 61.325 60.000 0.00 0.00 0.00 2.92
2289 4183 1.342672 ACAAGTTGACCACGACCCCT 61.343 55.000 10.54 0.00 0.00 4.79
2292 4186 1.164041 CCCACAAGTTGACCACGACC 61.164 60.000 10.54 0.00 0.00 4.79
2392 4286 2.594592 GCCCTGAAAGTGCACGGT 60.595 61.111 12.01 2.62 0.00 4.83
2520 4416 2.224402 GCCATCAGGTAGTCTCCATTCC 60.224 54.545 0.00 0.00 37.19 3.01
2646 4542 2.223340 CGGCAGATAATGTTGTTGGAGC 60.223 50.000 0.00 0.00 0.00 4.70
2745 4643 9.525826 AGGAGAGATTACATGTTTTCTCAAAAT 57.474 29.630 26.66 14.30 37.63 1.82
2877 6067 1.648467 GCGAGGAGACAATTGGTGGC 61.648 60.000 10.83 0.00 34.17 5.01
3057 6247 9.350951 AGTTGAACTTTACAAGCCTTATAAGTT 57.649 29.630 11.50 9.26 38.22 2.66
3058 6248 8.919777 AGTTGAACTTTACAAGCCTTATAAGT 57.080 30.769 11.50 0.00 0.00 2.24
3100 6290 7.736447 AATATTCAATTTCTCCTCTAAGCCG 57.264 36.000 0.00 0.00 0.00 5.52
3109 6299 5.363580 TGCCTGGGAAATATTCAATTTCTCC 59.636 40.000 7.65 8.60 37.63 3.71
3192 6414 1.686587 TCTCTCGTTGTCACCACATGT 59.313 47.619 0.00 0.00 30.55 3.21
3195 6417 1.000843 CCATCTCTCGTTGTCACCACA 59.999 52.381 0.00 0.00 0.00 4.17
3226 6448 9.139174 GTAATCATTGTGTTAAAATCCAACTGG 57.861 33.333 0.00 0.00 0.00 4.00
3246 6468 9.793259 ACCAAGAATCTCTTACTTTTGTAATCA 57.207 29.630 0.00 0.00 43.16 2.57
3252 6474 7.496529 TGTCACCAAGAATCTCTTACTTTTG 57.503 36.000 0.00 0.00 33.78 2.44
3336 6558 2.906388 TGCAGTGGCGTTGCACAT 60.906 55.556 11.10 0.00 45.89 3.21
3350 6572 8.999220 TGCTTGAATTTAAATGAACATATGCA 57.001 26.923 1.58 10.16 0.00 3.96
3351 6573 9.304731 TCTGCTTGAATTTAAATGAACATATGC 57.695 29.630 1.58 8.26 0.00 3.14
3355 6577 6.529125 CGCTCTGCTTGAATTTAAATGAACAT 59.471 34.615 0.39 0.00 0.00 2.71
3356 6578 5.858049 CGCTCTGCTTGAATTTAAATGAACA 59.142 36.000 0.39 0.66 0.00 3.18
3357 6579 5.287035 CCGCTCTGCTTGAATTTAAATGAAC 59.713 40.000 0.39 0.00 0.00 3.18
3358 6580 5.048083 ACCGCTCTGCTTGAATTTAAATGAA 60.048 36.000 0.39 0.00 0.00 2.57
3359 6581 4.458989 ACCGCTCTGCTTGAATTTAAATGA 59.541 37.500 0.39 0.00 0.00 2.57
3360 6582 4.737054 ACCGCTCTGCTTGAATTTAAATG 58.263 39.130 0.39 0.00 0.00 2.32
3361 6583 4.458989 TGACCGCTCTGCTTGAATTTAAAT 59.541 37.500 0.00 0.00 0.00 1.40
3362 6584 3.818210 TGACCGCTCTGCTTGAATTTAAA 59.182 39.130 0.00 0.00 0.00 1.52
3363 6585 3.407698 TGACCGCTCTGCTTGAATTTAA 58.592 40.909 0.00 0.00 0.00 1.52
3364 6586 3.052455 TGACCGCTCTGCTTGAATTTA 57.948 42.857 0.00 0.00 0.00 1.40
3365 6587 1.896220 TGACCGCTCTGCTTGAATTT 58.104 45.000 0.00 0.00 0.00 1.82
3366 6588 1.896220 TTGACCGCTCTGCTTGAATT 58.104 45.000 0.00 0.00 0.00 2.17
3367 6589 1.896220 TTTGACCGCTCTGCTTGAAT 58.104 45.000 0.00 0.00 0.00 2.57
3368 6590 1.333619 GTTTTGACCGCTCTGCTTGAA 59.666 47.619 0.00 0.00 0.00 2.69
3369 6591 0.944386 GTTTTGACCGCTCTGCTTGA 59.056 50.000 0.00 0.00 0.00 3.02
3370 6592 0.947244 AGTTTTGACCGCTCTGCTTG 59.053 50.000 0.00 0.00 0.00 4.01
3371 6593 0.947244 CAGTTTTGACCGCTCTGCTT 59.053 50.000 0.00 0.00 0.00 3.91
3372 6594 0.106708 TCAGTTTTGACCGCTCTGCT 59.893 50.000 0.00 0.00 0.00 4.24
3373 6595 1.135859 CATCAGTTTTGACCGCTCTGC 60.136 52.381 0.00 0.00 35.83 4.26
3374 6596 2.146342 ACATCAGTTTTGACCGCTCTG 58.854 47.619 0.00 0.00 35.83 3.35
3375 6597 2.550830 ACATCAGTTTTGACCGCTCT 57.449 45.000 0.00 0.00 35.83 4.09
3376 6598 2.808543 AGAACATCAGTTTTGACCGCTC 59.191 45.455 0.00 0.00 38.30 5.03
3377 6599 2.549754 CAGAACATCAGTTTTGACCGCT 59.450 45.455 0.00 0.00 41.09 5.52
3378 6600 2.350772 CCAGAACATCAGTTTTGACCGC 60.351 50.000 1.05 0.00 41.09 5.68
3379 6601 2.226437 CCCAGAACATCAGTTTTGACCG 59.774 50.000 1.05 0.00 41.09 4.79
3380 6602 3.486383 TCCCAGAACATCAGTTTTGACC 58.514 45.455 1.05 0.00 41.09 4.02
3381 6603 5.514274 TTTCCCAGAACATCAGTTTTGAC 57.486 39.130 1.05 0.00 41.09 3.18
3382 6604 6.537453 TTTTTCCCAGAACATCAGTTTTGA 57.463 33.333 1.05 0.00 41.09 2.69
3402 6624 4.973168 TCAGCACCATCACTAGAGTTTTT 58.027 39.130 0.00 0.00 0.00 1.94
3403 6625 4.623932 TCAGCACCATCACTAGAGTTTT 57.376 40.909 0.00 0.00 0.00 2.43
3404 6626 4.564406 CCTTCAGCACCATCACTAGAGTTT 60.564 45.833 0.00 0.00 0.00 2.66
3405 6627 3.055530 CCTTCAGCACCATCACTAGAGTT 60.056 47.826 0.00 0.00 0.00 3.01
3406 6628 2.499289 CCTTCAGCACCATCACTAGAGT 59.501 50.000 0.00 0.00 0.00 3.24
3407 6629 2.762887 TCCTTCAGCACCATCACTAGAG 59.237 50.000 0.00 0.00 0.00 2.43
3408 6630 2.820178 TCCTTCAGCACCATCACTAGA 58.180 47.619 0.00 0.00 0.00 2.43
3409 6631 3.464907 CATCCTTCAGCACCATCACTAG 58.535 50.000 0.00 0.00 0.00 2.57
3410 6632 2.420547 GCATCCTTCAGCACCATCACTA 60.421 50.000 0.00 0.00 0.00 2.74
3411 6633 1.681166 GCATCCTTCAGCACCATCACT 60.681 52.381 0.00 0.00 0.00 3.41
3412 6634 0.737219 GCATCCTTCAGCACCATCAC 59.263 55.000 0.00 0.00 0.00 3.06
3413 6635 0.622136 AGCATCCTTCAGCACCATCA 59.378 50.000 0.00 0.00 0.00 3.07
3414 6636 1.404391 CAAGCATCCTTCAGCACCATC 59.596 52.381 0.00 0.00 0.00 3.51
3415 6637 1.471119 CAAGCATCCTTCAGCACCAT 58.529 50.000 0.00 0.00 0.00 3.55
3416 6638 0.609957 CCAAGCATCCTTCAGCACCA 60.610 55.000 0.00 0.00 0.00 4.17
3417 6639 0.322816 TCCAAGCATCCTTCAGCACC 60.323 55.000 0.00 0.00 0.00 5.01
3418 6640 0.807496 GTCCAAGCATCCTTCAGCAC 59.193 55.000 0.00 0.00 0.00 4.40
3419 6641 0.694771 AGTCCAAGCATCCTTCAGCA 59.305 50.000 0.00 0.00 0.00 4.41
3420 6642 1.093159 CAGTCCAAGCATCCTTCAGC 58.907 55.000 0.00 0.00 0.00 4.26
3421 6643 2.775911 TCAGTCCAAGCATCCTTCAG 57.224 50.000 0.00 0.00 0.00 3.02
3422 6644 3.726557 AATCAGTCCAAGCATCCTTCA 57.273 42.857 0.00 0.00 0.00 3.02
3423 6645 5.649831 AGTTAAATCAGTCCAAGCATCCTTC 59.350 40.000 0.00 0.00 0.00 3.46
3424 6646 5.416952 CAGTTAAATCAGTCCAAGCATCCTT 59.583 40.000 0.00 0.00 0.00 3.36
3425 6647 4.946157 CAGTTAAATCAGTCCAAGCATCCT 59.054 41.667 0.00 0.00 0.00 3.24
3426 6648 4.096984 CCAGTTAAATCAGTCCAAGCATCC 59.903 45.833 0.00 0.00 0.00 3.51
3427 6649 4.096984 CCCAGTTAAATCAGTCCAAGCATC 59.903 45.833 0.00 0.00 0.00 3.91
3428 6650 4.019174 CCCAGTTAAATCAGTCCAAGCAT 58.981 43.478 0.00 0.00 0.00 3.79
3429 6651 3.073798 TCCCAGTTAAATCAGTCCAAGCA 59.926 43.478 0.00 0.00 0.00 3.91
3430 6652 3.440522 GTCCCAGTTAAATCAGTCCAAGC 59.559 47.826 0.00 0.00 0.00 4.01
3431 6653 4.911390 AGTCCCAGTTAAATCAGTCCAAG 58.089 43.478 0.00 0.00 0.00 3.61
3432 6654 4.993705 AGTCCCAGTTAAATCAGTCCAA 57.006 40.909 0.00 0.00 0.00 3.53
3433 6655 5.046591 CAGTAGTCCCAGTTAAATCAGTCCA 60.047 44.000 0.00 0.00 0.00 4.02
3434 6656 5.046520 ACAGTAGTCCCAGTTAAATCAGTCC 60.047 44.000 0.00 0.00 0.00 3.85
3435 6657 6.038997 ACAGTAGTCCCAGTTAAATCAGTC 57.961 41.667 0.00 0.00 0.00 3.51
3436 6658 6.154706 CCTACAGTAGTCCCAGTTAAATCAGT 59.845 42.308 6.84 0.00 0.00 3.41
3437 6659 6.154706 ACCTACAGTAGTCCCAGTTAAATCAG 59.845 42.308 6.84 0.00 0.00 2.90
3438 6660 6.021030 ACCTACAGTAGTCCCAGTTAAATCA 58.979 40.000 6.84 0.00 0.00 2.57
3439 6661 6.154021 TGACCTACAGTAGTCCCAGTTAAATC 59.846 42.308 6.84 0.00 31.76 2.17
3440 6662 6.021030 TGACCTACAGTAGTCCCAGTTAAAT 58.979 40.000 6.84 0.00 31.76 1.40
3441 6663 5.396485 TGACCTACAGTAGTCCCAGTTAAA 58.604 41.667 6.84 0.00 31.76 1.52
3442 6664 5.001833 TGACCTACAGTAGTCCCAGTTAA 57.998 43.478 6.84 0.00 31.76 2.01
3443 6665 4.662966 TGACCTACAGTAGTCCCAGTTA 57.337 45.455 6.84 0.00 31.76 2.24
3444 6666 3.537795 TGACCTACAGTAGTCCCAGTT 57.462 47.619 6.84 0.00 31.76 3.16
3445 6667 3.163467 GTTGACCTACAGTAGTCCCAGT 58.837 50.000 6.84 0.00 31.76 4.00
3446 6668 3.162666 TGTTGACCTACAGTAGTCCCAG 58.837 50.000 6.84 0.00 31.76 4.45
3447 6669 3.247948 TGTTGACCTACAGTAGTCCCA 57.752 47.619 6.84 0.00 31.76 4.37
3448 6670 3.322828 TGTTGTTGACCTACAGTAGTCCC 59.677 47.826 6.84 0.00 31.76 4.46
3449 6671 4.595762 TGTTGTTGACCTACAGTAGTCC 57.404 45.455 6.84 0.00 31.76 3.85
3450 6672 5.539048 ACATGTTGTTGACCTACAGTAGTC 58.461 41.667 6.84 5.29 0.00 2.59
3451 6673 5.546621 ACATGTTGTTGACCTACAGTAGT 57.453 39.130 6.84 0.00 0.00 2.73
3452 6674 9.647797 TTATTACATGTTGTTGACCTACAGTAG 57.352 33.333 2.30 0.00 0.00 2.57
3453 6675 9.426837 GTTATTACATGTTGTTGACCTACAGTA 57.573 33.333 2.30 0.00 0.00 2.74
3454 6676 7.934665 TGTTATTACATGTTGTTGACCTACAGT 59.065 33.333 2.30 0.00 0.00 3.55
3455 6677 8.317891 TGTTATTACATGTTGTTGACCTACAG 57.682 34.615 2.30 0.00 0.00 2.74
3456 6678 8.856153 ATGTTATTACATGTTGTTGACCTACA 57.144 30.769 2.30 0.00 43.29 2.74
3459 6681 9.515226 ACTAATGTTATTACATGTTGTTGACCT 57.485 29.630 2.30 0.00 44.14 3.85
3495 6717 4.992951 GGACTAATGTGTTTCACGTAAGGT 59.007 41.667 0.00 0.00 46.39 3.50
3496 6718 4.390909 GGGACTAATGTGTTTCACGTAAGG 59.609 45.833 0.00 0.00 46.39 2.69
3498 6720 3.989167 CGGGACTAATGTGTTTCACGTAA 59.011 43.478 0.00 0.00 37.14 3.18
3499 6721 3.005684 ACGGGACTAATGTGTTTCACGTA 59.994 43.478 0.00 0.00 37.14 3.57
3500 6722 2.224113 ACGGGACTAATGTGTTTCACGT 60.224 45.455 0.00 0.00 37.14 4.49
3501 6723 2.409975 ACGGGACTAATGTGTTTCACG 58.590 47.619 0.00 0.00 37.14 4.35
3502 6724 4.609783 CGAAACGGGACTAATGTGTTTCAC 60.610 45.833 14.23 0.00 45.27 3.18
3503 6725 3.495377 CGAAACGGGACTAATGTGTTTCA 59.505 43.478 14.23 0.00 45.27 2.69
3504 6726 3.742369 TCGAAACGGGACTAATGTGTTTC 59.258 43.478 6.16 6.16 42.92 2.78
3505 6727 3.731089 TCGAAACGGGACTAATGTGTTT 58.269 40.909 0.00 0.00 35.61 2.83
3506 6728 3.389925 TCGAAACGGGACTAATGTGTT 57.610 42.857 0.00 0.00 0.00 3.32
3507 6729 3.604875 ATCGAAACGGGACTAATGTGT 57.395 42.857 0.00 0.00 0.00 3.72
3508 6730 4.939509 AAATCGAAACGGGACTAATGTG 57.060 40.909 0.00 0.00 0.00 3.21
3509 6731 4.155280 CCAAAATCGAAACGGGACTAATGT 59.845 41.667 0.00 0.00 0.00 2.71
3510 6732 4.658071 CCAAAATCGAAACGGGACTAATG 58.342 43.478 0.00 0.00 0.00 1.90
3511 6733 3.128068 GCCAAAATCGAAACGGGACTAAT 59.872 43.478 0.00 0.00 0.00 1.73
3512 6734 2.485038 GCCAAAATCGAAACGGGACTAA 59.515 45.455 0.00 0.00 0.00 2.24
3513 6735 2.078392 GCCAAAATCGAAACGGGACTA 58.922 47.619 0.00 0.00 0.00 2.59
3514 6736 0.879090 GCCAAAATCGAAACGGGACT 59.121 50.000 0.00 0.00 0.00 3.85
3515 6737 0.109458 GGCCAAAATCGAAACGGGAC 60.109 55.000 0.00 0.00 0.00 4.46
3516 6738 0.250989 AGGCCAAAATCGAAACGGGA 60.251 50.000 5.01 0.00 0.00 5.14
3517 6739 0.109319 CAGGCCAAAATCGAAACGGG 60.109 55.000 5.01 0.00 0.00 5.28
3518 6740 0.109319 CCAGGCCAAAATCGAAACGG 60.109 55.000 5.01 0.00 0.00 4.44
3519 6741 0.596082 ACCAGGCCAAAATCGAAACG 59.404 50.000 5.01 0.00 0.00 3.60
3520 6742 2.817844 AGTACCAGGCCAAAATCGAAAC 59.182 45.455 5.01 0.00 0.00 2.78
3521 6743 3.149005 AGTACCAGGCCAAAATCGAAA 57.851 42.857 5.01 0.00 0.00 3.46
3522 6744 2.871096 AGTACCAGGCCAAAATCGAA 57.129 45.000 5.01 0.00 0.00 3.71
3523 6745 3.985019 TTAGTACCAGGCCAAAATCGA 57.015 42.857 5.01 0.00 0.00 3.59
3524 6746 3.315191 CCATTAGTACCAGGCCAAAATCG 59.685 47.826 5.01 0.00 0.00 3.34
3525 6747 4.278310 ACCATTAGTACCAGGCCAAAATC 58.722 43.478 5.01 0.00 0.00 2.17
3526 6748 4.331159 ACCATTAGTACCAGGCCAAAAT 57.669 40.909 5.01 0.00 0.00 1.82
3527 6749 3.818295 ACCATTAGTACCAGGCCAAAA 57.182 42.857 5.01 0.00 0.00 2.44
3528 6750 4.224991 GTACCATTAGTACCAGGCCAAA 57.775 45.455 5.01 0.00 44.85 3.28
3529 6751 3.918294 GTACCATTAGTACCAGGCCAA 57.082 47.619 5.01 0.00 44.85 4.52
3545 6767 1.202452 CGAACCGGGACTAATGGTACC 60.202 57.143 6.32 4.43 45.48 3.34
3546 6768 1.750778 TCGAACCGGGACTAATGGTAC 59.249 52.381 6.32 0.00 34.11 3.34
3547 6769 2.142356 TCGAACCGGGACTAATGGTA 57.858 50.000 6.32 0.00 34.11 3.25
3548 6770 1.066645 GTTCGAACCGGGACTAATGGT 60.067 52.381 17.68 0.00 37.68 3.55
3549 6771 1.648504 GTTCGAACCGGGACTAATGG 58.351 55.000 17.68 0.00 0.00 3.16
3550 6772 1.274596 CGTTCGAACCGGGACTAATG 58.725 55.000 22.07 0.54 0.00 1.90
3551 6773 0.174162 CCGTTCGAACCGGGACTAAT 59.826 55.000 22.07 0.00 41.78 1.73
3552 6774 1.586028 CCGTTCGAACCGGGACTAA 59.414 57.895 22.07 0.00 41.78 2.24
3553 6775 2.993471 GCCGTTCGAACCGGGACTA 61.993 63.158 28.14 0.00 45.57 2.59
3554 6776 4.368543 GCCGTTCGAACCGGGACT 62.369 66.667 28.14 0.00 45.57 3.85
3555 6777 2.288788 ATAGCCGTTCGAACCGGGAC 62.289 60.000 28.14 18.22 45.57 4.46
3556 6778 2.053865 ATAGCCGTTCGAACCGGGA 61.054 57.895 28.14 13.30 45.57 5.14
3557 6779 1.881252 CATAGCCGTTCGAACCGGG 60.881 63.158 28.14 22.63 45.57 5.73
3559 6781 1.151777 ATGCATAGCCGTTCGAACCG 61.152 55.000 22.07 16.66 0.00 4.44
3560 6782 1.014352 AATGCATAGCCGTTCGAACC 58.986 50.000 22.07 9.45 0.00 3.62
3561 6783 2.864343 ACTAATGCATAGCCGTTCGAAC 59.136 45.455 18.47 18.47 34.78 3.95
3562 6784 3.120792 GACTAATGCATAGCCGTTCGAA 58.879 45.455 0.00 0.00 34.78 3.71
3563 6785 2.545113 GGACTAATGCATAGCCGTTCGA 60.545 50.000 0.00 0.00 34.78 3.71
3564 6786 1.792949 GGACTAATGCATAGCCGTTCG 59.207 52.381 0.00 0.00 34.78 3.95
3565 6787 2.802816 CAGGACTAATGCATAGCCGTTC 59.197 50.000 0.00 0.00 34.73 3.95
3566 6788 2.485479 CCAGGACTAATGCATAGCCGTT 60.485 50.000 0.00 0.00 34.73 4.44
3567 6789 1.070758 CCAGGACTAATGCATAGCCGT 59.929 52.381 0.00 0.00 34.73 5.68
3568 6790 1.070758 ACCAGGACTAATGCATAGCCG 59.929 52.381 0.00 0.00 34.73 5.52
3569 6791 2.938956 ACCAGGACTAATGCATAGCC 57.061 50.000 0.00 0.00 34.78 3.93
3570 6792 3.808728 TGAACCAGGACTAATGCATAGC 58.191 45.455 0.00 0.00 34.78 2.97
3571 6793 6.319658 ACAAATGAACCAGGACTAATGCATAG 59.680 38.462 0.00 0.44 37.66 2.23
3572 6794 6.095300 CACAAATGAACCAGGACTAATGCATA 59.905 38.462 0.00 0.00 0.00 3.14
3573 6795 5.018809 ACAAATGAACCAGGACTAATGCAT 58.981 37.500 0.00 0.00 0.00 3.96
3574 6796 4.218200 CACAAATGAACCAGGACTAATGCA 59.782 41.667 0.00 0.00 0.00 3.96
3575 6797 4.458989 TCACAAATGAACCAGGACTAATGC 59.541 41.667 0.00 0.00 0.00 3.56
3576 6798 5.106157 GGTCACAAATGAACCAGGACTAATG 60.106 44.000 0.00 0.00 36.44 1.90
3577 6799 5.010282 GGTCACAAATGAACCAGGACTAAT 58.990 41.667 0.00 0.00 36.44 1.73
3578 6800 4.104102 AGGTCACAAATGAACCAGGACTAA 59.896 41.667 0.00 0.00 44.40 2.24
3579 6801 3.650942 AGGTCACAAATGAACCAGGACTA 59.349 43.478 0.00 0.00 44.40 2.59
3580 6802 2.443255 AGGTCACAAATGAACCAGGACT 59.557 45.455 0.00 0.00 44.40 3.85
3581 6803 2.863809 AGGTCACAAATGAACCAGGAC 58.136 47.619 0.00 0.00 44.40 3.85
3582 6804 3.392947 TGTAGGTCACAAATGAACCAGGA 59.607 43.478 0.00 0.00 44.40 3.86
3583 6805 3.750371 TGTAGGTCACAAATGAACCAGG 58.250 45.455 10.71 0.00 44.40 4.45
3584 6806 4.389374 ACTGTAGGTCACAAATGAACCAG 58.611 43.478 10.71 0.00 44.40 4.00
3585 6807 4.385825 GACTGTAGGTCACAAATGAACCA 58.614 43.478 10.71 0.00 44.40 3.67
3586 6808 3.751698 GGACTGTAGGTCACAAATGAACC 59.248 47.826 0.00 2.77 44.40 3.62
3587 6809 3.751698 GGGACTGTAGGTCACAAATGAAC 59.248 47.826 0.00 0.00 46.94 3.18
3588 6810 4.015872 GGGACTGTAGGTCACAAATGAA 57.984 45.455 0.00 0.00 46.94 2.57
3589 6811 3.695830 GGGACTGTAGGTCACAAATGA 57.304 47.619 0.00 0.00 46.94 2.57
3595 6817 0.683412 AAACCGGGACTGTAGGTCAC 59.317 55.000 6.32 0.00 46.16 3.67
3596 6818 0.682852 CAAACCGGGACTGTAGGTCA 59.317 55.000 6.32 0.00 46.16 4.02
3597 6819 0.683412 ACAAACCGGGACTGTAGGTC 59.317 55.000 6.32 0.00 43.79 3.85
3598 6820 0.395312 CACAAACCGGGACTGTAGGT 59.605 55.000 6.32 0.00 40.50 3.08
3599 6821 0.395312 ACACAAACCGGGACTGTAGG 59.605 55.000 6.32 0.00 0.00 3.18
3600 6822 1.069513 TGACACAAACCGGGACTGTAG 59.930 52.381 6.32 3.94 0.00 2.74
3601 6823 1.121378 TGACACAAACCGGGACTGTA 58.879 50.000 6.32 0.00 0.00 2.74
3602 6824 0.463116 GTGACACAAACCGGGACTGT 60.463 55.000 6.32 2.48 0.00 3.55
3603 6825 0.462937 TGTGACACAAACCGGGACTG 60.463 55.000 6.32 1.73 0.00 3.51
3604 6826 0.253610 TTGTGACACAAACCGGGACT 59.746 50.000 18.56 0.00 34.76 3.85
3605 6827 1.096416 TTTGTGACACAAACCGGGAC 58.904 50.000 26.08 0.00 42.55 4.46
3606 6828 3.571748 TTTGTGACACAAACCGGGA 57.428 47.368 26.08 6.83 42.55 5.14
3612 6834 2.980568 AGTCTCGGTTTGTGACACAAA 58.019 42.857 26.08 26.08 44.91 2.83
3613 6835 2.684001 AGTCTCGGTTTGTGACACAA 57.316 45.000 17.02 17.02 42.26 3.33
3614 6836 3.804786 TTAGTCTCGGTTTGTGACACA 57.195 42.857 3.56 3.56 42.26 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.