Multiple sequence alignment - TraesCS6D01G043600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G043600 chr6D 100.000 3671 0 0 1 3671 18019535 18015865 0.000000e+00 6780.0
1 TraesCS6D01G043600 chr6D 87.162 148 16 3 767 912 17974078 17974224 8.160000e-37 165.0
2 TraesCS6D01G043600 chr6A 89.607 3127 192 77 1 3089 18701505 18704536 0.000000e+00 3851.0
3 TraesCS6D01G043600 chr6A 87.990 383 35 8 3294 3671 18704737 18705113 3.360000e-120 442.0
4 TraesCS6D01G043600 chr6B 88.778 1301 72 27 513 1779 32335115 32333855 0.000000e+00 1526.0
5 TraesCS6D01G043600 chr6B 89.789 852 52 20 1947 2796 32333671 32332853 0.000000e+00 1059.0
6 TraesCS6D01G043600 chr6B 89.407 472 29 13 1 455 32335679 32335212 3.180000e-160 575.0
7 TraesCS6D01G043600 chr6B 82.946 387 35 18 3294 3671 32332264 32331900 1.640000e-83 320.0
8 TraesCS6D01G043600 chr4A 79.880 333 47 14 1039 1360 611070220 611069897 3.690000e-55 226.0
9 TraesCS6D01G043600 chr5B 93.805 113 7 0 1039 1151 704501633 704501745 1.750000e-38 171.0
10 TraesCS6D01G043600 chr5B 80.874 183 22 9 1179 1358 704501808 704501980 8.270000e-27 132.0
11 TraesCS6D01G043600 chr2B 90.805 87 8 0 1984 2070 550996459 550996373 2.320000e-22 117.0
12 TraesCS6D01G043600 chr2B 88.506 87 10 0 1984 2070 550510857 550510771 5.010000e-19 106.0
13 TraesCS6D01G043600 chr2B 83.036 112 13 5 1961 2070 550857405 550857298 3.020000e-16 97.1
14 TraesCS6D01G043600 chr2D 89.655 87 9 0 1984 2070 471372054 471371968 1.080000e-20 111.0
15 TraesCS6D01G043600 chr2D 89.655 87 9 0 1984 2070 471896130 471896044 1.080000e-20 111.0
16 TraesCS6D01G043600 chr2A 88.506 87 10 0 1984 2070 613037361 613037275 5.010000e-19 106.0
17 TraesCS6D01G043600 chr2A 88.506 87 10 0 1984 2070 613174188 613174102 5.010000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G043600 chr6D 18015865 18019535 3670 True 6780.0 6780 100.0000 1 3671 1 chr6D.!!$R1 3670
1 TraesCS6D01G043600 chr6A 18701505 18705113 3608 False 2146.5 3851 88.7985 1 3671 2 chr6A.!!$F1 3670
2 TraesCS6D01G043600 chr6B 32331900 32335679 3779 True 870.0 1526 87.7300 1 3671 4 chr6B.!!$R1 3670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 276 0.036875 GTCCCTTCTTGTGTCCCTGG 59.963 60.0 0.00 0.0 0.0 4.45 F
754 827 0.107459 GACATCCTCTGACCAAGCCC 60.107 60.0 0.00 0.0 0.0 5.19 F
1782 1892 0.117140 AGGGATCCTCACACACCTCA 59.883 55.0 12.58 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1712 1822 1.078285 GACGACGTCCTCCTCCTCT 60.078 63.158 17.25 0.0 0.0 3.69 R
2520 2692 1.152567 ATGTTGGTGGTGGTGGTGG 60.153 57.895 0.00 0.0 0.0 4.61 R
3254 3580 0.589223 TGCCAAACTTTTAGCGACGG 59.411 50.000 0.00 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 65 6.330278 TCGATTCGCCTCGATGAATATTAAT 58.670 36.000 0.00 0.00 42.38 1.40
76 82 5.852282 ATTAATTACCAGTGGTGCCATTC 57.148 39.130 25.64 0.00 36.19 2.67
98 104 1.269257 GCCAGCTCAGTTTGTTCCAAC 60.269 52.381 0.00 0.00 0.00 3.77
119 125 5.505173 ACACTTGGTGAATGTGAAAGAAG 57.495 39.130 4.62 0.00 36.96 2.85
143 154 5.760484 AATTATGGTTGGCATCCAAGTTT 57.240 34.783 20.44 11.24 44.82 2.66
185 196 5.763204 GTGTCAGAAAGGTCCTTGTTTATGA 59.237 40.000 4.45 0.00 32.83 2.15
264 276 0.036875 GTCCCTTCTTGTGTCCCTGG 59.963 60.000 0.00 0.00 0.00 4.45
284 299 0.625849 TTCTCCATTCCTGGCCTTCC 59.374 55.000 3.32 0.00 42.80 3.46
375 392 1.012086 CTCATGTCAATGCTCCACCG 58.988 55.000 0.00 0.00 33.47 4.94
429 447 3.250040 GCGCCGATTATTGGATAACAGTT 59.750 43.478 1.96 0.00 0.00 3.16
510 560 2.219674 GCTCGCGTTTATCTCAGAATGG 59.780 50.000 5.77 0.00 36.16 3.16
710 783 2.490509 CCAAAACCGAGTGAATAACCCC 59.509 50.000 0.00 0.00 0.00 4.95
754 827 0.107459 GACATCCTCTGACCAAGCCC 60.107 60.000 0.00 0.00 0.00 5.19
808 888 3.814504 ACCAACTCAATTCCACAGGAT 57.185 42.857 0.00 0.00 0.00 3.24
930 1016 3.748083 TGCAACAGCTCATCTTCTCTTT 58.252 40.909 0.00 0.00 0.00 2.52
1152 1241 1.954733 GCTGGTGAGCTCTCTCTCTGA 60.955 57.143 16.19 0.00 42.52 3.27
1156 1247 2.101249 GGTGAGCTCTCTCTCTGAATGG 59.899 54.545 16.19 0.00 40.03 3.16
1165 1256 5.770919 TCTCTCTCTGAATGGATGTAGGAA 58.229 41.667 0.00 0.00 0.00 3.36
1168 1259 5.306419 TCTCTCTGAATGGATGTAGGAATGG 59.694 44.000 0.00 0.00 0.00 3.16
1171 1262 6.069440 TCTCTGAATGGATGTAGGAATGGTTT 60.069 38.462 0.00 0.00 0.00 3.27
1176 1267 3.509575 TGGATGTAGGAATGGTTTGTTGC 59.490 43.478 0.00 0.00 0.00 4.17
1177 1268 3.119137 GGATGTAGGAATGGTTTGTTGCC 60.119 47.826 0.00 0.00 0.00 4.52
1189 1280 2.430694 GTTTGTTGCCACTTCTTTCCCT 59.569 45.455 0.00 0.00 0.00 4.20
1197 1288 3.321968 GCCACTTCTTTCCCTTTTCATGT 59.678 43.478 0.00 0.00 0.00 3.21
1203 1294 6.660949 ACTTCTTTCCCTTTTCATGTATGGAG 59.339 38.462 0.00 0.00 0.00 3.86
1207 1298 7.895429 TCTTTCCCTTTTCATGTATGGAGATTT 59.105 33.333 0.00 0.00 0.00 2.17
1310 1402 3.476295 TTTGATGAGCTTGCATCGTTC 57.524 42.857 10.00 0.00 45.93 3.95
1346 1438 9.772973 TTGTTTGTATTTAGCTTAGAGTTCTGA 57.227 29.630 0.00 0.00 0.00 3.27
1354 1446 5.489792 AGCTTAGAGTTCTGATTGGAACA 57.510 39.130 9.50 0.00 45.52 3.18
1481 1574 4.074259 TGTTTGACCTTCACATGATCCAG 58.926 43.478 0.00 0.00 0.00 3.86
1511 1604 7.552687 TGAACATAGTTCCCATATCAGTCAAAC 59.447 37.037 7.36 0.00 0.00 2.93
1548 1650 3.263170 TGAGGTGGCAATTTGAGCTAGTA 59.737 43.478 0.00 0.00 0.00 1.82
1549 1651 4.261801 GAGGTGGCAATTTGAGCTAGTAA 58.738 43.478 0.00 0.00 0.00 2.24
1550 1652 4.860022 AGGTGGCAATTTGAGCTAGTAAT 58.140 39.130 0.00 0.00 0.00 1.89
1561 1670 8.970859 ATTTGAGCTAGTAATTGCTATCTGTT 57.029 30.769 11.06 0.00 39.91 3.16
1571 1680 9.331282 AGTAATTGCTATCTGTTAATCACTTCC 57.669 33.333 0.00 0.00 0.00 3.46
1574 1683 7.849804 TTGCTATCTGTTAATCACTTCCTTC 57.150 36.000 0.00 0.00 0.00 3.46
1709 1819 2.509336 AAGCGCGGGATGTTCTCG 60.509 61.111 8.83 0.00 44.64 4.04
1739 1849 1.741706 GAGGACGTCGTCATCAACCTA 59.258 52.381 29.36 0.00 42.04 3.08
1749 1859 2.162408 GTCATCAACCTACAAGCCAAGC 59.838 50.000 0.00 0.00 0.00 4.01
1779 1889 2.188817 AGTAAGGGATCCTCACACACC 58.811 52.381 12.58 0.00 30.89 4.16
1780 1890 2.188817 GTAAGGGATCCTCACACACCT 58.811 52.381 12.58 0.00 30.89 4.00
1781 1891 1.280457 AAGGGATCCTCACACACCTC 58.720 55.000 12.58 0.00 30.89 3.85
1782 1892 0.117140 AGGGATCCTCACACACCTCA 59.883 55.000 12.58 0.00 0.00 3.86
1785 1895 1.625818 GGATCCTCACACACCTCAACT 59.374 52.381 3.84 0.00 0.00 3.16
1800 1927 2.372172 CTCAACTCCCACCACCTAAACT 59.628 50.000 0.00 0.00 0.00 2.66
1802 1929 3.975312 TCAACTCCCACCACCTAAACTTA 59.025 43.478 0.00 0.00 0.00 2.24
1803 1930 4.412858 TCAACTCCCACCACCTAAACTTAA 59.587 41.667 0.00 0.00 0.00 1.85
1810 1937 6.612049 TCCCACCACCTAAACTTAACAAAAAT 59.388 34.615 0.00 0.00 0.00 1.82
1819 1946 9.788960 CCTAAACTTAACAAAAATATGAGAGCC 57.211 33.333 0.00 0.00 0.00 4.70
1839 1984 3.853671 GCCAAATGCTGAAGATACAAACG 59.146 43.478 0.00 0.00 36.87 3.60
1843 1988 6.808212 CCAAATGCTGAAGATACAAACGAAAT 59.192 34.615 0.00 0.00 0.00 2.17
1850 1995 8.227791 GCTGAAGATACAAACGAAATTCAACTA 58.772 33.333 0.00 0.00 0.00 2.24
1867 2012 7.908193 TTCAACTAAATTTTGAAGTCGAAGC 57.092 32.000 6.63 0.00 37.91 3.86
1875 2020 1.125093 TGAAGTCGAAGCCCCCTTCA 61.125 55.000 9.18 9.18 46.25 3.02
1918 2063 3.053455 AGAAAAGCTCGAGAAAGACACG 58.947 45.455 18.75 0.00 0.00 4.49
1919 2064 2.795175 AAAGCTCGAGAAAGACACGA 57.205 45.000 18.75 0.00 39.04 4.35
1920 2065 2.053282 AAGCTCGAGAAAGACACGAC 57.947 50.000 18.75 0.00 36.77 4.34
1921 2066 0.241481 AGCTCGAGAAAGACACGACC 59.759 55.000 18.75 0.00 36.77 4.79
1922 2067 0.241481 GCTCGAGAAAGACACGACCT 59.759 55.000 18.75 0.00 36.77 3.85
1923 2068 1.336056 GCTCGAGAAAGACACGACCTT 60.336 52.381 18.75 0.00 36.77 3.50
1924 2069 2.862921 GCTCGAGAAAGACACGACCTTT 60.863 50.000 18.75 0.00 36.77 3.11
1925 2070 2.981140 CTCGAGAAAGACACGACCTTTC 59.019 50.000 6.58 15.64 45.91 2.62
1929 2074 3.587403 GAAAGACACGACCTTTCACAC 57.413 47.619 17.32 0.01 45.26 3.82
1933 2078 3.606687 AGACACGACCTTTCACACTTTT 58.393 40.909 0.00 0.00 0.00 2.27
1973 2124 6.996879 TGGATGATGATCTGAGATTTCCTTTC 59.003 38.462 0.00 0.00 0.00 2.62
2013 2164 1.667191 GATCGCGATGCATCTGCCT 60.667 57.895 29.09 18.61 41.18 4.75
2058 2209 3.757493 AGAACTACTGGAACTCGTACCTG 59.243 47.826 0.00 0.00 0.00 4.00
2347 2498 4.873129 CCGACTGGATGCCGACCG 62.873 72.222 0.00 0.00 37.49 4.79
2511 2683 4.641645 CACCCGCACCAGCAGGAA 62.642 66.667 0.35 0.00 40.99 3.36
2520 2692 1.898574 CCAGCAGGAACACCACCAC 60.899 63.158 0.00 0.00 36.89 4.16
2521 2693 1.898574 CAGCAGGAACACCACCACC 60.899 63.158 0.00 0.00 0.00 4.61
2522 2694 2.194597 GCAGGAACACCACCACCA 59.805 61.111 0.00 0.00 0.00 4.17
2524 2696 1.528309 CAGGAACACCACCACCACC 60.528 63.158 0.00 0.00 0.00 4.61
2525 2697 2.004120 AGGAACACCACCACCACCA 61.004 57.895 0.00 0.00 0.00 4.17
2526 2698 1.826487 GGAACACCACCACCACCAC 60.826 63.158 0.00 0.00 0.00 4.16
2527 2699 1.826487 GAACACCACCACCACCACC 60.826 63.158 0.00 0.00 0.00 4.61
2528 2700 2.559922 GAACACCACCACCACCACCA 62.560 60.000 0.00 0.00 0.00 4.17
2530 2702 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
2531 2703 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
2532 2704 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
2533 2705 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
2534 2706 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
2535 2707 2.277072 CACCACCACCACCACCAA 59.723 61.111 0.00 0.00 0.00 3.67
2536 2708 2.124693 CACCACCACCACCACCAAC 61.125 63.158 0.00 0.00 0.00 3.77
2537 2709 2.277072 CCACCACCACCACCAACA 59.723 61.111 0.00 0.00 0.00 3.33
2538 2710 1.152567 CCACCACCACCACCAACAT 60.153 57.895 0.00 0.00 0.00 2.71
2539 2711 1.462731 CCACCACCACCACCAACATG 61.463 60.000 0.00 0.00 0.00 3.21
2540 2712 1.152567 ACCACCACCACCAACATGG 60.153 57.895 0.00 0.00 46.10 3.66
2541 2713 2.573083 CCACCACCACCAACATGGC 61.573 63.158 0.00 0.00 44.33 4.40
2542 2714 1.531365 CACCACCACCAACATGGCT 60.531 57.895 0.00 0.00 44.33 4.75
2543 2715 1.228552 ACCACCACCAACATGGCTC 60.229 57.895 0.00 0.00 44.33 4.70
2544 2716 1.978617 CCACCACCAACATGGCTCC 60.979 63.158 0.00 0.00 44.33 4.70
2545 2717 1.228521 CACCACCAACATGGCTCCA 60.229 57.895 0.00 0.00 44.33 3.86
2546 2718 1.228552 ACCACCAACATGGCTCCAC 60.229 57.895 0.00 0.00 44.33 4.02
2547 2719 1.978617 CCACCAACATGGCTCCACC 60.979 63.158 0.00 0.00 42.67 4.61
2548 2720 2.034066 ACCAACATGGCTCCACCG 59.966 61.111 0.00 0.00 42.67 4.94
2745 2921 6.348621 ACAAAATTTGTTCTGTGTTCATGC 57.651 33.333 5.41 0.00 42.22 4.06
2844 3020 8.915057 AATGTGATCATGTTAATTAGAGGGAG 57.085 34.615 0.00 0.00 34.19 4.30
2879 3055 7.830739 AGGTTGGACATAATTCTTTCATTGTC 58.169 34.615 0.00 0.00 34.24 3.18
2894 3070 1.893544 TTGTCGTTTTCCCCGCAATA 58.106 45.000 0.00 0.00 0.00 1.90
2989 3166 3.610821 GCAAACATTTGTTCCGGGAGTAC 60.611 47.826 0.00 0.00 40.24 2.73
2992 3169 2.268298 CATTTGTTCCGGGAGTACTCG 58.732 52.381 16.56 6.89 40.02 4.18
2993 3170 1.619654 TTTGTTCCGGGAGTACTCGA 58.380 50.000 16.56 5.86 43.41 4.04
2994 3171 1.619654 TTGTTCCGGGAGTACTCGAA 58.380 50.000 16.56 11.50 43.41 3.71
3023 3224 9.772973 ACAAGTTATGATGTTGAACTACACTTA 57.227 29.630 0.00 0.00 33.13 2.24
3053 3255 5.066893 CCATGTGAGTGGAGAAAATGTATGG 59.933 44.000 0.00 0.00 42.02 2.74
3084 3293 8.804688 ATGTCTTGCTATCTTAATTACGAGAC 57.195 34.615 10.10 10.10 0.00 3.36
3129 3401 6.808704 GCTCAAGGTCAATGGAAATTTTCTAC 59.191 38.462 8.93 1.36 0.00 2.59
3131 3403 5.897377 AGGTCAATGGAAATTTTCTACGG 57.103 39.130 8.93 0.06 0.00 4.02
3136 3408 7.913821 GGTCAATGGAAATTTTCTACGGAATAC 59.086 37.037 8.93 0.00 0.00 1.89
3145 3417 6.956299 TTTTCTACGGAATACAGTTAGCAC 57.044 37.500 0.00 0.00 0.00 4.40
3153 3425 6.077838 CGGAATACAGTTAGCACAAAGAAAC 58.922 40.000 0.00 0.00 0.00 2.78
3156 3428 4.632538 ACAGTTAGCACAAAGAAACCAC 57.367 40.909 0.00 0.00 0.00 4.16
3162 3434 3.299503 AGCACAAAGAAACCACCTGAAT 58.700 40.909 0.00 0.00 0.00 2.57
3164 3436 4.520492 AGCACAAAGAAACCACCTGAATAG 59.480 41.667 0.00 0.00 0.00 1.73
3165 3437 4.278419 GCACAAAGAAACCACCTGAATAGT 59.722 41.667 0.00 0.00 0.00 2.12
3166 3438 5.562890 GCACAAAGAAACCACCTGAATAGTC 60.563 44.000 0.00 0.00 0.00 2.59
3167 3439 5.765182 CACAAAGAAACCACCTGAATAGTCT 59.235 40.000 0.00 0.00 0.00 3.24
3169 3441 7.444183 CACAAAGAAACCACCTGAATAGTCTTA 59.556 37.037 0.00 0.00 0.00 2.10
3171 3443 8.669243 CAAAGAAACCACCTGAATAGTCTTATC 58.331 37.037 0.00 0.00 0.00 1.75
3174 3446 9.213777 AGAAACCACCTGAATAGTCTTATCATA 57.786 33.333 0.00 0.00 0.00 2.15
3177 3449 8.727100 ACCACCTGAATAGTCTTATCATATCA 57.273 34.615 0.00 0.00 0.00 2.15
3178 3450 8.589338 ACCACCTGAATAGTCTTATCATATCAC 58.411 37.037 0.00 0.00 0.00 3.06
3180 3452 7.757173 CACCTGAATAGTCTTATCATATCACGG 59.243 40.741 0.00 0.00 0.00 4.94
3181 3453 7.451877 ACCTGAATAGTCTTATCATATCACGGT 59.548 37.037 0.00 0.00 0.00 4.83
3182 3454 7.971168 CCTGAATAGTCTTATCATATCACGGTC 59.029 40.741 0.00 0.00 0.00 4.79
3184 3456 7.670140 TGAATAGTCTTATCATATCACGGTCCT 59.330 37.037 0.00 0.00 0.00 3.85
3185 3457 5.713792 AGTCTTATCATATCACGGTCCTG 57.286 43.478 0.00 0.00 0.00 3.86
3197 3471 1.336755 ACGGTCCTGCAAATCAAACAC 59.663 47.619 0.00 0.00 0.00 3.32
3205 3479 2.890311 TGCAAATCAAACACCCACCTAG 59.110 45.455 0.00 0.00 0.00 3.02
3212 3486 4.906618 TCAAACACCCACCTAGAAGAATC 58.093 43.478 0.00 0.00 0.00 2.52
3228 3502 6.427441 AGAAGAATCCCTACTCCAAAAATCC 58.573 40.000 0.00 0.00 0.00 3.01
3232 3506 4.586306 TCCCTACTCCAAAAATCCTTCC 57.414 45.455 0.00 0.00 0.00 3.46
3259 3585 3.747099 ATTTGAATCTTTCAGCCGTCG 57.253 42.857 0.00 0.00 41.38 5.12
3260 3586 0.796312 TTGAATCTTTCAGCCGTCGC 59.204 50.000 0.00 0.00 41.38 5.19
3265 3591 2.157834 TCTTTCAGCCGTCGCTAAAA 57.842 45.000 0.00 0.00 46.25 1.52
3277 3603 3.548268 CGTCGCTAAAAGTTTGGCAAAAA 59.452 39.130 15.29 0.00 43.79 1.94
3296 3653 5.726980 AAAAATATTGCTGCTCCAACTCA 57.273 34.783 0.00 0.00 0.00 3.41
3351 3709 5.184864 ACTCTCAGTGGAGTTGATACAGAAG 59.815 44.000 8.07 0.00 43.14 2.85
3356 3715 4.284490 AGTGGAGTTGATACAGAAGAGCAA 59.716 41.667 0.00 0.00 0.00 3.91
3377 3736 9.169468 GAGCAATAATAAATCACCAACATTACG 57.831 33.333 0.00 0.00 0.00 3.18
3387 3752 4.464951 TCACCAACATTACGTAGATGTCCT 59.535 41.667 17.71 6.57 36.76 3.85
3392 3757 6.036083 CCAACATTACGTAGATGTCCTTTCTG 59.964 42.308 17.71 12.99 36.76 3.02
3394 3759 6.931838 ACATTACGTAGATGTCCTTTCTGAA 58.068 36.000 13.95 0.00 32.48 3.02
3395 3760 7.036220 ACATTACGTAGATGTCCTTTCTGAAG 58.964 38.462 13.95 0.00 32.48 3.02
3396 3761 6.585695 TTACGTAGATGTCCTTTCTGAAGT 57.414 37.500 0.00 0.00 0.00 3.01
3420 3785 6.903883 AGTAAACCTTACATAGATGTTGCG 57.096 37.500 0.00 0.00 41.97 4.85
3421 3786 5.815740 AGTAAACCTTACATAGATGTTGCGG 59.184 40.000 0.00 2.40 41.97 5.69
3424 3789 4.442706 ACCTTACATAGATGTTGCGGAAG 58.557 43.478 0.00 0.00 41.97 3.46
3429 3794 1.438651 TAGATGTTGCGGAAGTGTGC 58.561 50.000 0.00 0.00 0.00 4.57
3446 3811 4.582656 AGTGTGCAACCTTACATGCTTAAA 59.417 37.500 0.00 0.00 42.97 1.52
3456 3821 9.819267 AACCTTACATGCTTAAATCTAGTAGAC 57.181 33.333 0.85 0.00 0.00 2.59
3540 3907 3.548770 ACTACAATGCCATGGATGACAG 58.451 45.455 18.40 14.43 0.00 3.51
3544 3911 1.219773 ATGCCATGGATGACAGAGGT 58.780 50.000 18.40 0.00 32.42 3.85
3563 3930 2.432874 GGTAACAAAAGGGCAAACAGGT 59.567 45.455 0.00 0.00 0.00 4.00
3564 3931 2.689553 AACAAAAGGGCAAACAGGTG 57.310 45.000 0.00 0.00 0.00 4.00
3600 3967 2.223180 GCGAGAAAAGTGGTTGTCGTTT 60.223 45.455 6.38 0.00 43.88 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.153269 TGCCTGTTTCGTGTGCTCA 60.153 52.632 0.00 0.00 0.00 4.26
59 65 1.886222 GCAGAATGGCACCACTGGTAA 60.886 52.381 15.51 0.00 35.86 2.85
76 82 0.595095 GGAACAAACTGAGCTGGCAG 59.405 55.000 10.94 10.94 41.63 4.85
98 104 5.756195 TCTTCTTTCACATTCACCAAGTG 57.244 39.130 0.00 0.00 34.45 3.16
119 125 5.343307 ACTTGGATGCCAACCATAATTTC 57.657 39.130 0.00 0.00 38.75 2.17
143 154 2.840038 ACACAGGTTAGCCATGATGAGA 59.160 45.455 6.86 0.00 37.19 3.27
264 276 1.683319 GGAAGGCCAGGAATGGAGAAC 60.683 57.143 5.01 0.00 0.00 3.01
284 299 6.460676 GGCCTCTTCCAAATGTCAATCATTAG 60.461 42.308 0.00 0.00 44.85 1.73
375 392 3.127548 CAGACTTGTGCACCAATGATACC 59.872 47.826 15.69 0.00 31.20 2.73
592 648 2.503765 TGGGATGTTTCTCTAATCGGCA 59.496 45.455 0.00 0.00 0.00 5.69
710 783 2.622942 CTCCTTCCTCAGAGATTCTCGG 59.377 54.545 8.01 7.71 35.36 4.63
754 827 2.295885 GGTTCAGATCATGAGCTTGGG 58.704 52.381 11.61 0.03 39.68 4.12
808 888 1.622811 TCGCTCCCCGGTTTAGTTTAA 59.377 47.619 0.00 0.00 37.59 1.52
875 955 2.739379 GTGGCAGCACTAGACTTTCTTC 59.261 50.000 0.00 0.00 0.00 2.87
877 957 1.974236 AGTGGCAGCACTAGACTTTCT 59.026 47.619 0.00 0.00 32.97 2.52
878 958 2.464157 AGTGGCAGCACTAGACTTTC 57.536 50.000 0.00 0.00 32.97 2.62
881 961 1.187087 GGTAGTGGCAGCACTAGACT 58.813 55.000 0.00 0.00 38.23 3.24
883 963 1.006043 AGAGGTAGTGGCAGCACTAGA 59.994 52.381 0.00 0.00 38.23 2.43
921 1004 3.242867 TCTTCTGCCTCCAAAGAGAAGA 58.757 45.455 0.00 0.00 45.16 2.87
930 1016 2.296365 CCCTGCTCTTCTGCCTCCA 61.296 63.158 0.00 0.00 0.00 3.86
1152 1241 5.337491 GCAACAAACCATTCCTACATCCATT 60.337 40.000 0.00 0.00 0.00 3.16
1156 1247 4.110036 GGCAACAAACCATTCCTACATC 57.890 45.455 0.00 0.00 0.00 3.06
1176 1267 6.350445 CCATACATGAAAAGGGAAAGAAGTGG 60.350 42.308 0.00 0.00 0.00 4.00
1177 1268 6.434028 TCCATACATGAAAAGGGAAAGAAGTG 59.566 38.462 0.00 0.00 0.00 3.16
1189 1280 7.485810 CATGCAGAAATCTCCATACATGAAAA 58.514 34.615 0.00 0.00 36.60 2.29
1197 1288 3.581265 TGGCATGCAGAAATCTCCATA 57.419 42.857 21.36 0.00 0.00 2.74
1268 1360 9.830975 TCAAATTATTGCTAATGCTACTAGACA 57.169 29.630 0.00 0.00 40.48 3.41
1310 1402 9.705290 AAGCTAAATACAAACAAAACCATTAGG 57.295 29.630 0.00 0.00 42.21 2.69
1337 1429 6.825721 GGATGTAATGTTCCAATCAGAACTCT 59.174 38.462 6.04 0.00 45.25 3.24
1345 1437 7.756395 AGATCATGGATGTAATGTTCCAATC 57.244 36.000 0.00 0.00 44.83 2.67
1346 1438 8.443176 ACTAGATCATGGATGTAATGTTCCAAT 58.557 33.333 0.00 0.00 44.83 3.16
1354 1446 9.821240 AGACTAGAACTAGATCATGGATGTAAT 57.179 33.333 14.64 0.00 36.97 1.89
1435 1528 8.267894 ACAGATTTCTAGGCAATTAGCTCTTTA 58.732 33.333 0.00 0.00 44.79 1.85
1481 1574 5.376625 TGATATGGGAACTATGTTCAAGCC 58.623 41.667 11.75 5.36 0.00 4.35
1511 1604 3.438087 CCACCTCACATTTGTGCTAGAAG 59.562 47.826 5.81 0.00 45.25 2.85
1529 1631 5.343249 CAATTACTAGCTCAAATTGCCACC 58.657 41.667 12.62 0.00 34.78 4.61
1548 1650 8.814038 AAGGAAGTGATTAACAGATAGCAATT 57.186 30.769 0.00 0.00 0.00 2.32
1549 1651 8.270744 AGAAGGAAGTGATTAACAGATAGCAAT 58.729 33.333 0.00 0.00 0.00 3.56
1550 1652 7.624549 AGAAGGAAGTGATTAACAGATAGCAA 58.375 34.615 0.00 0.00 0.00 3.91
1559 1668 8.794335 AATTCAGGTAGAAGGAAGTGATTAAC 57.206 34.615 0.00 0.00 40.15 2.01
1564 1673 6.349300 GCATAATTCAGGTAGAAGGAAGTGA 58.651 40.000 0.00 0.00 40.15 3.41
1571 1680 7.814264 AATTCAGGCATAATTCAGGTAGAAG 57.186 36.000 0.00 0.00 40.15 2.85
1574 1683 7.338800 ACAAATTCAGGCATAATTCAGGTAG 57.661 36.000 0.00 0.00 0.00 3.18
1709 1819 1.513622 GACGTCCTCCTCCTCTTGC 59.486 63.158 3.51 0.00 0.00 4.01
1712 1822 1.078285 GACGACGTCCTCCTCCTCT 60.078 63.158 17.25 0.00 0.00 3.69
1749 1859 2.369394 GATCCCTTACTTGTTGCCCAG 58.631 52.381 0.00 0.00 0.00 4.45
1779 1889 2.372172 AGTTTAGGTGGTGGGAGTTGAG 59.628 50.000 0.00 0.00 0.00 3.02
1780 1890 2.414612 AGTTTAGGTGGTGGGAGTTGA 58.585 47.619 0.00 0.00 0.00 3.18
1781 1891 2.951229 AGTTTAGGTGGTGGGAGTTG 57.049 50.000 0.00 0.00 0.00 3.16
1782 1892 4.166531 TGTTAAGTTTAGGTGGTGGGAGTT 59.833 41.667 0.00 0.00 0.00 3.01
1785 1895 4.792513 TTGTTAAGTTTAGGTGGTGGGA 57.207 40.909 0.00 0.00 0.00 4.37
1800 1927 8.477984 GCATTTGGCTCTCATATTTTTGTTAA 57.522 30.769 0.00 0.00 40.25 2.01
1802 1929 6.973229 GCATTTGGCTCTCATATTTTTGTT 57.027 33.333 0.00 0.00 40.25 2.83
1817 1944 3.853671 CGTTTGTATCTTCAGCATTTGGC 59.146 43.478 0.00 0.00 45.30 4.52
1819 1946 7.801547 ATTTCGTTTGTATCTTCAGCATTTG 57.198 32.000 0.00 0.00 0.00 2.32
1843 1988 6.915843 GGCTTCGACTTCAAAATTTAGTTGAA 59.084 34.615 16.31 16.31 41.50 2.69
1850 1995 2.299013 GGGGGCTTCGACTTCAAAATTT 59.701 45.455 0.00 0.00 0.00 1.82
1866 2011 2.342279 GCCGTTTTTGAAGGGGGC 59.658 61.111 0.75 0.00 0.00 5.80
1867 2012 2.197605 ACGCCGTTTTTGAAGGGGG 61.198 57.895 11.72 11.72 42.79 5.40
1907 2052 3.245519 GTGTGAAAGGTCGTGTCTTTCTC 59.754 47.826 19.72 17.61 46.02 2.87
1908 2053 3.118738 AGTGTGAAAGGTCGTGTCTTTCT 60.119 43.478 19.72 5.92 46.02 2.52
1909 2054 3.195661 AGTGTGAAAGGTCGTGTCTTTC 58.804 45.455 15.49 15.49 46.04 2.62
1911 2056 2.981859 AGTGTGAAAGGTCGTGTCTT 57.018 45.000 0.00 0.00 0.00 3.01
1912 2057 2.981859 AAGTGTGAAAGGTCGTGTCT 57.018 45.000 0.00 0.00 0.00 3.41
1913 2058 3.126343 ACAAAAGTGTGAAAGGTCGTGTC 59.874 43.478 0.00 0.00 36.31 3.67
1915 2060 3.757745 ACAAAAGTGTGAAAGGTCGTG 57.242 42.857 0.00 0.00 36.31 4.35
1918 2063 7.412891 CCATGAAAAACAAAAGTGTGAAAGGTC 60.413 37.037 0.00 0.00 38.27 3.85
1919 2064 6.371271 CCATGAAAAACAAAAGTGTGAAAGGT 59.629 34.615 0.00 0.00 38.27 3.50
1920 2065 6.675244 GCCATGAAAAACAAAAGTGTGAAAGG 60.675 38.462 0.00 0.00 38.27 3.11
1921 2066 6.250089 GCCATGAAAAACAAAAGTGTGAAAG 58.750 36.000 0.00 0.00 38.27 2.62
1922 2067 5.163913 CGCCATGAAAAACAAAAGTGTGAAA 60.164 36.000 0.00 0.00 38.27 2.69
1923 2068 4.328440 CGCCATGAAAAACAAAAGTGTGAA 59.672 37.500 0.00 0.00 38.27 3.18
1924 2069 3.862267 CGCCATGAAAAACAAAAGTGTGA 59.138 39.130 0.00 0.00 38.27 3.58
1925 2070 3.862267 TCGCCATGAAAAACAAAAGTGTG 59.138 39.130 0.00 0.00 38.27 3.82
1926 2071 4.116747 TCGCCATGAAAAACAAAAGTGT 57.883 36.364 0.00 0.00 40.75 3.55
1927 2072 4.084433 CCATCGCCATGAAAAACAAAAGTG 60.084 41.667 0.00 0.00 30.57 3.16
1928 2073 4.057432 CCATCGCCATGAAAAACAAAAGT 58.943 39.130 0.00 0.00 30.57 2.66
1929 2074 4.305769 TCCATCGCCATGAAAAACAAAAG 58.694 39.130 0.00 0.00 30.57 2.27
1933 2078 3.087781 TCATCCATCGCCATGAAAAACA 58.912 40.909 0.00 0.00 30.57 2.83
1973 2124 1.442769 CGACCACCTGACCAAAGATG 58.557 55.000 0.00 0.00 0.00 2.90
2013 2164 2.203523 TCGTTGTCCGTCCTCCCA 60.204 61.111 0.00 0.00 37.94 4.37
2058 2209 1.986575 GCTGCATCACCCGCTTCTTC 61.987 60.000 0.00 0.00 0.00 2.87
2367 2518 3.597728 GAGTAGCTCTCCGGCCCG 61.598 72.222 0.00 0.00 37.22 6.13
2508 2680 1.826487 GTGGTGGTGGTGGTGTTCC 60.826 63.158 0.00 0.00 0.00 3.62
2509 2681 1.826487 GGTGGTGGTGGTGGTGTTC 60.826 63.158 0.00 0.00 0.00 3.18
2511 2683 3.018193 TGGTGGTGGTGGTGGTGT 61.018 61.111 0.00 0.00 0.00 4.16
2520 2692 1.152567 ATGTTGGTGGTGGTGGTGG 60.153 57.895 0.00 0.00 0.00 4.61
2521 2693 1.462731 CCATGTTGGTGGTGGTGGTG 61.463 60.000 0.00 0.00 34.46 4.17
2522 2694 1.152567 CCATGTTGGTGGTGGTGGT 60.153 57.895 0.00 0.00 34.46 4.16
2524 2696 1.526575 GAGCCATGTTGGTGGTGGTG 61.527 60.000 0.00 0.00 40.46 4.17
2525 2697 1.228552 GAGCCATGTTGGTGGTGGT 60.229 57.895 0.00 0.00 40.46 4.16
2526 2698 1.978617 GGAGCCATGTTGGTGGTGG 60.979 63.158 0.00 0.00 40.46 4.61
2527 2699 1.228521 TGGAGCCATGTTGGTGGTG 60.229 57.895 0.00 0.00 40.46 4.17
2528 2700 1.228552 GTGGAGCCATGTTGGTGGT 60.229 57.895 0.00 0.00 40.46 4.16
2530 2702 2.334946 CGGTGGAGCCATGTTGGTG 61.335 63.158 0.00 0.00 40.46 4.17
2531 2703 2.034066 CGGTGGAGCCATGTTGGT 59.966 61.111 0.00 0.00 40.46 3.67
2532 2704 3.443045 GCGGTGGAGCCATGTTGG 61.443 66.667 0.00 0.00 41.55 3.77
2745 2921 7.086376 CACCTCTTTCCATTTTTCATACACAG 58.914 38.462 0.00 0.00 0.00 3.66
2849 3025 7.695055 TGAAAGAATTATGTCCAACCTAAGGA 58.305 34.615 0.00 0.00 0.00 3.36
2917 3093 3.631686 AGCTCACATTTGCACTTTACACA 59.368 39.130 0.00 0.00 0.00 3.72
2962 3139 3.005367 CCCGGAACAAATGTTTGCTAAGT 59.995 43.478 0.73 0.00 41.79 2.24
2963 3140 3.254657 TCCCGGAACAAATGTTTGCTAAG 59.745 43.478 0.73 0.00 41.79 2.18
2972 3149 2.094390 TCGAGTACTCCCGGAACAAATG 60.094 50.000 17.23 0.00 0.00 2.32
2989 3166 9.478019 GTTCAACATCATAACTTGTTATTCGAG 57.522 33.333 3.52 0.00 34.42 4.04
3104 3346 5.787380 AGAAAATTTCCATTGACCTTGAGC 58.213 37.500 1.57 0.00 0.00 4.26
3106 3348 6.072175 CCGTAGAAAATTTCCATTGACCTTGA 60.072 38.462 1.57 0.00 0.00 3.02
3107 3349 6.072175 TCCGTAGAAAATTTCCATTGACCTTG 60.072 38.462 1.57 0.00 0.00 3.61
3129 3401 5.856126 TTCTTTGTGCTAACTGTATTCCG 57.144 39.130 0.00 0.00 0.00 4.30
3131 3403 6.856426 GTGGTTTCTTTGTGCTAACTGTATTC 59.144 38.462 0.00 0.00 0.00 1.75
3136 3408 3.632145 AGGTGGTTTCTTTGTGCTAACTG 59.368 43.478 0.00 0.00 0.00 3.16
3145 3417 6.884280 AAGACTATTCAGGTGGTTTCTTTG 57.116 37.500 0.00 0.00 0.00 2.77
3153 3425 7.757173 CGTGATATGATAAGACTATTCAGGTGG 59.243 40.741 0.00 0.00 0.00 4.61
3156 3428 7.831753 ACCGTGATATGATAAGACTATTCAGG 58.168 38.462 0.00 0.00 0.00 3.86
3162 3434 5.183331 GCAGGACCGTGATATGATAAGACTA 59.817 44.000 0.00 0.00 0.00 2.59
3164 3436 4.238514 GCAGGACCGTGATATGATAAGAC 58.761 47.826 0.00 0.00 0.00 3.01
3165 3437 3.895041 TGCAGGACCGTGATATGATAAGA 59.105 43.478 0.00 0.00 0.00 2.10
3166 3438 4.257267 TGCAGGACCGTGATATGATAAG 57.743 45.455 0.00 0.00 0.00 1.73
3167 3439 4.681074 TTGCAGGACCGTGATATGATAA 57.319 40.909 0.00 0.00 0.00 1.75
3169 3441 3.558931 TTTGCAGGACCGTGATATGAT 57.441 42.857 0.00 0.00 0.00 2.45
3171 3443 3.205338 TGATTTGCAGGACCGTGATATG 58.795 45.455 0.00 0.00 0.00 1.78
3174 3446 2.198827 TTGATTTGCAGGACCGTGAT 57.801 45.000 0.00 0.00 0.00 3.06
3176 3448 1.336440 TGTTTGATTTGCAGGACCGTG 59.664 47.619 0.00 0.00 0.00 4.94
3177 3449 1.336755 GTGTTTGATTTGCAGGACCGT 59.663 47.619 0.00 0.00 0.00 4.83
3178 3450 1.335872 GGTGTTTGATTTGCAGGACCG 60.336 52.381 0.00 0.00 0.00 4.79
3180 3452 1.686052 TGGGTGTTTGATTTGCAGGAC 59.314 47.619 0.00 0.00 0.00 3.85
3181 3453 1.686052 GTGGGTGTTTGATTTGCAGGA 59.314 47.619 0.00 0.00 0.00 3.86
3182 3454 1.270252 GGTGGGTGTTTGATTTGCAGG 60.270 52.381 0.00 0.00 0.00 4.85
3184 3456 1.786937 AGGTGGGTGTTTGATTTGCA 58.213 45.000 0.00 0.00 0.00 4.08
3185 3457 3.153919 TCTAGGTGGGTGTTTGATTTGC 58.846 45.455 0.00 0.00 0.00 3.68
3197 3471 3.898741 GAGTAGGGATTCTTCTAGGTGGG 59.101 52.174 0.00 0.00 0.00 4.61
3205 3479 6.427441 AGGATTTTTGGAGTAGGGATTCTTC 58.573 40.000 0.00 0.00 0.00 2.87
3212 3486 4.316025 TGGAAGGATTTTTGGAGTAGGG 57.684 45.455 0.00 0.00 0.00 3.53
3232 3506 8.243289 ACGGCTGAAAGATTCAAATTAATTTG 57.757 30.769 27.80 27.80 42.08 2.32
3240 3566 1.196808 GCGACGGCTGAAAGATTCAAA 59.803 47.619 0.00 0.00 39.58 2.69
3241 3567 0.796312 GCGACGGCTGAAAGATTCAA 59.204 50.000 0.00 0.00 39.58 2.69
3253 3579 0.728129 GCCAAACTTTTAGCGACGGC 60.728 55.000 0.00 0.00 40.37 5.68
3254 3580 0.589223 TGCCAAACTTTTAGCGACGG 59.411 50.000 0.00 0.00 0.00 4.79
3277 3603 5.012239 TCTTTGAGTTGGAGCAGCAATATT 58.988 37.500 0.00 0.00 0.00 1.28
3278 3604 4.592942 TCTTTGAGTTGGAGCAGCAATAT 58.407 39.130 0.00 0.00 0.00 1.28
3280 3606 2.818432 CTCTTTGAGTTGGAGCAGCAAT 59.182 45.455 0.00 0.00 0.00 3.56
3281 3607 2.158769 TCTCTTTGAGTTGGAGCAGCAA 60.159 45.455 0.00 0.00 0.00 3.91
3282 3608 1.417517 TCTCTTTGAGTTGGAGCAGCA 59.582 47.619 0.00 0.00 0.00 4.41
3283 3609 2.175878 TCTCTTTGAGTTGGAGCAGC 57.824 50.000 0.00 0.00 0.00 5.25
3284 3610 4.205065 AGATCTCTTTGAGTTGGAGCAG 57.795 45.455 0.00 0.00 0.00 4.24
3285 3611 4.321718 CAAGATCTCTTTGAGTTGGAGCA 58.678 43.478 0.00 0.00 33.11 4.26
3286 3612 3.126686 GCAAGATCTCTTTGAGTTGGAGC 59.873 47.826 0.00 0.00 33.11 4.70
3287 3613 4.321718 TGCAAGATCTCTTTGAGTTGGAG 58.678 43.478 0.00 0.00 33.11 3.86
3288 3614 4.356405 TGCAAGATCTCTTTGAGTTGGA 57.644 40.909 0.00 0.00 33.11 3.53
3290 3616 6.250344 TGAATGCAAGATCTCTTTGAGTTG 57.750 37.500 0.00 0.00 33.11 3.16
3296 3653 9.204570 CAAATTCTTTGAATGCAAGATCTCTTT 57.795 29.630 0.00 0.00 43.26 2.52
3326 3683 4.702612 TCTGTATCAACTCCACTGAGAGTC 59.297 45.833 5.77 0.00 46.44 3.36
3328 3685 5.417266 TCTTCTGTATCAACTCCACTGAGAG 59.583 44.000 0.00 0.00 41.42 3.20
3351 3709 9.169468 CGTAATGTTGGTGATTTATTATTGCTC 57.831 33.333 0.00 0.00 0.00 4.26
3364 3723 4.464951 AGGACATCTACGTAATGTTGGTGA 59.535 41.667 18.17 3.01 36.67 4.02
3377 3736 9.356433 GTTTACTACTTCAGAAAGGACATCTAC 57.644 37.037 0.00 0.00 36.78 2.59
3394 3759 7.705325 CGCAACATCTATGTAAGGTTTACTACT 59.295 37.037 0.00 0.00 40.80 2.57
3395 3760 7.042925 CCGCAACATCTATGTAAGGTTTACTAC 60.043 40.741 0.00 0.00 40.80 2.73
3396 3761 6.982141 CCGCAACATCTATGTAAGGTTTACTA 59.018 38.462 0.00 0.00 40.80 1.82
3420 3785 2.351738 GCATGTAAGGTTGCACACTTCC 60.352 50.000 5.41 0.00 38.72 3.46
3421 3786 2.554032 AGCATGTAAGGTTGCACACTTC 59.446 45.455 5.41 0.41 41.35 3.01
3424 3789 4.497473 TTAAGCATGTAAGGTTGCACAC 57.503 40.909 0.00 0.00 41.35 3.82
3429 3794 9.817809 TCTACTAGATTTAAGCATGTAAGGTTG 57.182 33.333 0.00 0.00 0.00 3.77
3501 3866 6.445357 TGTAGTCTCGCACTATGTAATGAA 57.555 37.500 0.00 0.00 39.90 2.57
3504 3869 5.692204 GCATTGTAGTCTCGCACTATGTAAT 59.308 40.000 0.00 0.00 39.90 1.89
3512 3879 1.328680 CATGGCATTGTAGTCTCGCAC 59.671 52.381 0.00 0.00 0.00 5.34
3518 3885 3.544684 TGTCATCCATGGCATTGTAGTC 58.455 45.455 6.96 0.00 37.51 2.59
3540 3907 3.243737 CCTGTTTGCCCTTTTGTTACCTC 60.244 47.826 0.00 0.00 0.00 3.85
3544 3911 3.131400 GTCACCTGTTTGCCCTTTTGTTA 59.869 43.478 0.00 0.00 0.00 2.41
3600 3967 1.376683 CAGCGGGAAACGGAATCCA 60.377 57.895 0.00 0.00 44.51 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.