Multiple sequence alignment - TraesCS6D01G043500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G043500 chr6D 100.000 4540 0 0 539 5078 18012429 18016968 0.000000e+00 8384
1 TraesCS6D01G043500 chr6D 100.000 208 0 0 1 208 18011891 18012098 7.980000e-103 385
2 TraesCS6D01G043500 chr6A 90.204 2603 191 38 1787 4352 18707312 18704737 0.000000e+00 3336
3 TraesCS6D01G043500 chr6A 92.776 526 31 6 4557 5078 18704536 18704014 0.000000e+00 754
4 TraesCS6D01G043500 chr6A 94.550 422 17 4 988 1409 18708203 18707788 0.000000e+00 647
5 TraesCS6D01G043500 chr6A 93.750 80 3 2 878 956 18708285 18708207 8.930000e-23 119
6 TraesCS6D01G043500 chr6B 93.662 1641 85 10 1824 3450 32329554 32331189 0.000000e+00 2436
7 TraesCS6D01G043500 chr6B 87.179 936 78 24 3434 4352 32331354 32332264 0.000000e+00 1026
8 TraesCS6D01G043500 chr6B 91.632 478 22 9 926 1403 32328682 32329141 0.000000e+00 645
9 TraesCS6D01G043500 chr6B 88.646 229 15 8 4850 5076 32332853 32333072 8.380000e-68 268
10 TraesCS6D01G043500 chr6B 85.116 215 24 4 1 208 32328098 32328311 3.980000e-51 213
11 TraesCS6D01G043500 chr7A 87.129 404 46 5 1000 1403 511879186 511878789 2.160000e-123 453
12 TraesCS6D01G043500 chr7A 87.898 314 26 2 1090 1403 377638371 377638672 4.830000e-95 359
13 TraesCS6D01G043500 chr7A 85.623 313 23 7 1091 1403 5206672 5206382 4.940000e-80 309
14 TraesCS6D01G043500 chr7D 84.562 434 42 13 1090 1509 227551744 227552166 1.700000e-109 407
15 TraesCS6D01G043500 chr7D 88.924 316 24 3 1090 1403 261515879 261516185 3.710000e-101 379
16 TraesCS6D01G043500 chr2B 89.809 314 22 3 1090 1403 521325623 521325320 1.330000e-105 394
17 TraesCS6D01G043500 chr3A 83.607 427 60 6 980 1403 426658219 426658638 4.770000e-105 392
18 TraesCS6D01G043500 chr5A 83.081 396 40 12 980 1367 312228957 312228581 8.150000e-88 335
19 TraesCS6D01G043500 chr5A 83.081 396 40 12 980 1367 596571161 596571537 8.150000e-88 335
20 TraesCS6D01G043500 chr2A 82.828 396 41 12 980 1367 516678329 516678705 3.790000e-86 329
21 TraesCS6D01G043500 chr5B 87.676 284 26 1 1120 1403 117896183 117895909 6.340000e-84 322
22 TraesCS6D01G043500 chr5D 82.609 391 28 13 984 1367 157853686 157853329 4.940000e-80 309


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G043500 chr6D 18011891 18016968 5077 False 4384.5 8384 100.000 1 5078 2 chr6D.!!$F1 5077
1 TraesCS6D01G043500 chr6A 18704014 18708285 4271 True 1214.0 3336 92.820 878 5078 4 chr6A.!!$R1 4200
2 TraesCS6D01G043500 chr6B 32328098 32333072 4974 False 917.6 2436 89.247 1 5076 5 chr6B.!!$F1 5075

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
817 843 0.039798 GCAGCATAATCGTGCCATGG 60.040 55.000 7.63 7.63 46.19 3.66 F
1406 1438 0.179111 CGAGGTCGAATGCTTAGCCA 60.179 55.000 0.29 0.00 43.02 4.75 F
1423 1455 0.393820 CCAGCCACTGCAACCATTTT 59.606 50.000 0.00 0.00 41.13 1.82 F
2088 2251 1.037579 GCTGGGGTTCTAATGTGCCC 61.038 60.000 0.00 0.00 40.35 5.36 F
2169 2332 1.409427 CGGATACTCCCACTGAAGGAC 59.591 57.143 0.00 0.00 31.13 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2204 0.034670 GGAGCCTCTTGCAATGTCCT 60.035 55.000 0.00 0.0 44.83 3.85 R
2649 2812 1.241990 TGACACCTTCCTCGGTCTCG 61.242 60.000 0.00 0.0 34.29 4.04 R
3198 3367 3.068165 ACGAGAGTTGACACACTTGATGA 59.932 43.478 0.00 0.0 46.40 2.92 R
3668 4028 0.730840 GGTCTTCGCGTAAAATGGGG 59.269 55.000 5.77 0.0 0.00 4.96 R
4100 4468 1.219773 ATGCCATGGATGACAGAGGT 58.780 50.000 18.40 0.0 32.42 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 53 2.007114 CGTCTGACGCACGAACGAA 61.007 57.895 17.94 0.00 39.75 3.85
52 56 0.525882 TCTGACGCACGAACGAACAA 60.526 50.000 8.71 0.00 36.70 2.83
58 62 0.316689 GCACGAACGAACAAACCCTG 60.317 55.000 0.14 0.00 0.00 4.45
59 63 1.011333 CACGAACGAACAAACCCTGT 58.989 50.000 0.14 0.00 41.27 4.00
60 64 1.011333 ACGAACGAACAAACCCTGTG 58.989 50.000 0.14 0.00 38.67 3.66
66 70 1.523758 GAACAAACCCTGTGAGCGAT 58.476 50.000 0.00 0.00 38.67 4.58
92 96 0.669619 TACCGCGCGATCTAATCCAA 59.330 50.000 34.63 0.00 0.00 3.53
95 99 0.716108 CGCGCGATCTAATCCAATCC 59.284 55.000 28.94 0.00 0.00 3.01
99 103 2.069273 GCGATCTAATCCAATCCACGG 58.931 52.381 0.00 0.00 0.00 4.94
101 105 3.318017 CGATCTAATCCAATCCACGGAC 58.682 50.000 0.00 0.00 34.69 4.79
108 112 1.295423 CAATCCACGGACGAACCCT 59.705 57.895 0.00 0.00 34.64 4.34
110 114 1.066716 CAATCCACGGACGAACCCTAA 60.067 52.381 0.00 0.00 34.64 2.69
117 121 0.803117 GGACGAACCCTAAGCAAAGC 59.197 55.000 0.00 0.00 0.00 3.51
121 125 1.069227 CGAACCCTAAGCAAAGCACAC 60.069 52.381 0.00 0.00 0.00 3.82
134 138 3.056458 CACACTGGTAGGCGGACA 58.944 61.111 0.00 0.00 0.00 4.02
149 153 1.732732 CGGACAAAGACTGGACTAGCG 60.733 57.143 0.00 0.00 0.00 4.26
203 211 2.814604 CGTGCCCATCGGATCTGA 59.185 61.111 6.72 6.72 0.00 3.27
673 698 2.025418 CCCGCCGTTATATCGTGGC 61.025 63.158 2.74 2.70 44.09 5.01
681 707 2.607187 GTTATATCGTGGCGGAGATGG 58.393 52.381 0.41 0.00 0.00 3.51
682 708 2.209690 TATATCGTGGCGGAGATGGA 57.790 50.000 0.41 0.00 0.00 3.41
688 714 3.096852 TCGTGGCGGAGATGGATATTAT 58.903 45.455 0.00 0.00 0.00 1.28
710 736 1.763968 GTACAGGCCCCTCATTTTCC 58.236 55.000 0.00 0.00 0.00 3.13
712 738 0.486879 ACAGGCCCCTCATTTTCCAA 59.513 50.000 0.00 0.00 0.00 3.53
727 753 3.678056 TTCCAACTATTCGCACACTCT 57.322 42.857 0.00 0.00 0.00 3.24
728 754 3.232213 TCCAACTATTCGCACACTCTC 57.768 47.619 0.00 0.00 0.00 3.20
729 755 2.560981 TCCAACTATTCGCACACTCTCA 59.439 45.455 0.00 0.00 0.00 3.27
737 763 0.173029 CGCACACTCTCAGCTGATCT 59.827 55.000 18.63 0.00 0.00 2.75
759 785 3.733709 CCACTCAGGGCTGAAAGTT 57.266 52.632 0.00 0.00 39.39 2.66
761 787 1.242076 CACTCAGGGCTGAAAGTTGG 58.758 55.000 0.00 0.00 39.39 3.77
767 793 4.735369 TCAGGGCTGAAAGTTGGATTAAA 58.265 39.130 0.00 0.00 36.53 1.52
771 797 5.543790 AGGGCTGAAAGTTGGATTAAATGTT 59.456 36.000 0.00 0.00 35.30 2.71
782 808 3.118775 GGATTAAATGTTCTTGTGGGGGC 60.119 47.826 0.00 0.00 0.00 5.80
789 815 2.005606 TTCTTGTGGGGGCTTGAGCA 62.006 55.000 5.24 0.00 44.36 4.26
798 824 1.478105 GGGGCTTGAGCATAAAACTGG 59.522 52.381 5.24 0.00 44.36 4.00
800 826 1.545582 GGCTTGAGCATAAAACTGGCA 59.454 47.619 5.24 0.00 44.36 4.92
803 829 1.908344 TGAGCATAAAACTGGCAGCA 58.092 45.000 15.89 0.00 0.00 4.41
806 832 4.015764 TGAGCATAAAACTGGCAGCATAA 58.984 39.130 15.89 0.00 0.00 1.90
807 833 4.646040 TGAGCATAAAACTGGCAGCATAAT 59.354 37.500 15.89 0.52 0.00 1.28
808 834 5.192327 AGCATAAAACTGGCAGCATAATC 57.808 39.130 15.89 0.00 0.00 1.75
809 835 3.976942 GCATAAAACTGGCAGCATAATCG 59.023 43.478 15.89 0.00 0.00 3.34
810 836 4.498009 GCATAAAACTGGCAGCATAATCGT 60.498 41.667 15.89 0.00 0.00 3.73
811 837 3.492421 AAAACTGGCAGCATAATCGTG 57.508 42.857 15.89 0.00 0.00 4.35
812 838 0.734889 AACTGGCAGCATAATCGTGC 59.265 50.000 15.89 0.00 45.38 5.34
816 842 3.467043 GCAGCATAATCGTGCCATG 57.533 52.632 0.00 0.00 46.19 3.66
817 843 0.039798 GCAGCATAATCGTGCCATGG 60.040 55.000 7.63 7.63 46.19 3.66
818 844 0.039798 CAGCATAATCGTGCCATGGC 60.040 55.000 30.54 30.54 46.19 4.40
847 873 2.288834 TTGCCAGGCAAATGATGGG 58.711 52.632 25.43 0.00 45.96 4.00
848 874 1.901654 TTGCCAGGCAAATGATGGGC 61.902 55.000 25.43 0.00 45.96 5.36
852 878 2.495866 GGCAAATGATGGGCCGTG 59.504 61.111 1.02 0.00 38.04 4.94
853 879 2.202783 GCAAATGATGGGCCGTGC 60.203 61.111 1.02 0.00 0.00 5.34
870 896 3.302344 CCAACCCGGCCTGTTTGG 61.302 66.667 9.07 9.07 39.35 3.28
879 905 4.507969 CCTGTTTGGCCAGCTCTT 57.492 55.556 5.11 0.00 0.00 2.85
880 906 3.650647 CCTGTTTGGCCAGCTCTTA 57.349 52.632 5.11 0.00 0.00 2.10
881 907 1.909700 CCTGTTTGGCCAGCTCTTAA 58.090 50.000 5.11 0.00 0.00 1.85
882 908 2.450476 CCTGTTTGGCCAGCTCTTAAT 58.550 47.619 5.11 0.00 0.00 1.40
889 915 2.093181 TGGCCAGCTCTTAATTTAGCGA 60.093 45.455 0.00 0.00 43.63 4.93
921 947 1.745653 GGGGCAAAGAGAAAATCGGAG 59.254 52.381 0.00 0.00 0.00 4.63
971 998 3.128188 CCAGAGCAGCAGCAGCAG 61.128 66.667 12.92 0.00 45.49 4.24
972 999 2.047179 CAGAGCAGCAGCAGCAGA 60.047 61.111 12.92 0.00 45.49 4.26
973 1000 2.103647 CAGAGCAGCAGCAGCAGAG 61.104 63.158 12.92 0.00 45.49 3.35
974 1001 3.501548 GAGCAGCAGCAGCAGAGC 61.502 66.667 12.92 4.44 45.49 4.09
975 1002 4.331067 AGCAGCAGCAGCAGAGCA 62.331 61.111 12.92 0.00 45.49 4.26
976 1003 3.362797 GCAGCAGCAGCAGAGCAA 61.363 61.111 4.63 0.00 45.49 3.91
977 1004 2.561885 CAGCAGCAGCAGAGCAAC 59.438 61.111 3.17 0.00 45.49 4.17
978 1005 2.672307 AGCAGCAGCAGAGCAACC 60.672 61.111 3.17 0.00 45.49 3.77
979 1006 3.745803 GCAGCAGCAGAGCAACCC 61.746 66.667 0.00 0.00 41.58 4.11
980 1007 3.060615 CAGCAGCAGAGCAACCCC 61.061 66.667 0.00 0.00 36.85 4.95
981 1008 4.357279 AGCAGCAGAGCAACCCCC 62.357 66.667 0.00 0.00 36.85 5.40
982 1009 4.357279 GCAGCAGAGCAACCCCCT 62.357 66.667 0.00 0.00 0.00 4.79
983 1010 2.045536 CAGCAGAGCAACCCCCTC 60.046 66.667 0.00 0.00 0.00 4.30
1387 1414 3.479269 CGCCCGAGTTCGTCAAGC 61.479 66.667 0.48 0.00 37.74 4.01
1388 1415 3.479269 GCCCGAGTTCGTCAAGCG 61.479 66.667 0.48 0.00 43.01 4.68
1406 1438 0.179111 CGAGGTCGAATGCTTAGCCA 60.179 55.000 0.29 0.00 43.02 4.75
1415 1447 2.360350 GCTTAGCCAGCCACTGCA 60.360 61.111 0.00 0.00 43.65 4.41
1422 1454 2.051941 CCAGCCACTGCAACCATTT 58.948 52.632 0.00 0.00 41.13 2.32
1423 1455 0.393820 CCAGCCACTGCAACCATTTT 59.606 50.000 0.00 0.00 41.13 1.82
1425 1457 2.137523 CAGCCACTGCAACCATTTTTC 58.862 47.619 0.00 0.00 41.13 2.29
1426 1458 2.041701 AGCCACTGCAACCATTTTTCT 58.958 42.857 0.00 0.00 41.13 2.52
1427 1459 2.137523 GCCACTGCAACCATTTTTCTG 58.862 47.619 0.00 0.00 37.47 3.02
1428 1460 2.483538 GCCACTGCAACCATTTTTCTGT 60.484 45.455 0.00 0.00 37.47 3.41
1430 1462 3.556775 CCACTGCAACCATTTTTCTGTTG 59.443 43.478 0.00 0.00 41.69 3.33
1431 1463 4.183101 CACTGCAACCATTTTTCTGTTGT 58.817 39.130 0.00 0.00 41.04 3.32
1432 1464 4.630940 CACTGCAACCATTTTTCTGTTGTT 59.369 37.500 0.00 0.00 41.04 2.83
1433 1465 4.630940 ACTGCAACCATTTTTCTGTTGTTG 59.369 37.500 0.00 0.00 41.04 3.33
1447 1486 5.414360 TCTGTTGTTGCTAGAATAGAGCTG 58.586 41.667 0.00 0.00 42.77 4.24
1452 1491 6.042638 TGTTGCTAGAATAGAGCTGAAACT 57.957 37.500 0.00 0.00 42.77 2.66
1457 1496 4.815533 AGAATAGAGCTGAAACTCTGCA 57.184 40.909 0.00 0.00 46.50 4.41
1460 1499 5.420421 AGAATAGAGCTGAAACTCTGCAGTA 59.580 40.000 14.67 0.00 46.50 2.74
1461 1500 3.311486 AGAGCTGAAACTCTGCAGTAC 57.689 47.619 14.67 2.85 45.36 2.73
1462 1501 1.989165 GAGCTGAAACTCTGCAGTACG 59.011 52.381 14.67 6.25 42.77 3.67
1463 1502 1.341531 AGCTGAAACTCTGCAGTACGT 59.658 47.619 14.67 6.92 42.77 3.57
1467 1506 3.120792 TGAAACTCTGCAGTACGTGAAC 58.879 45.455 14.67 5.97 30.14 3.18
1468 1507 3.181479 TGAAACTCTGCAGTACGTGAACT 60.181 43.478 14.67 0.00 30.14 3.01
1497 1541 8.515473 CGTTAATTTGCTCATCGATTTGTTTAG 58.485 33.333 0.00 0.00 0.00 1.85
1499 1543 5.627499 TTTGCTCATCGATTTGTTTAGCT 57.373 34.783 0.00 0.00 0.00 3.32
1500 1544 5.627499 TTGCTCATCGATTTGTTTAGCTT 57.373 34.783 0.00 0.00 0.00 3.74
1509 1556 7.011828 TCGATTTGTTTAGCTTGTTATAGGC 57.988 36.000 0.00 0.00 0.00 3.93
1511 1558 6.687105 CGATTTGTTTAGCTTGTTATAGGCAC 59.313 38.462 0.00 0.00 33.01 5.01
1512 1559 5.539582 TTGTTTAGCTTGTTATAGGCACG 57.460 39.130 0.00 0.00 33.01 5.34
1531 1599 4.790878 CACGGGATGATGATTTGCATAAG 58.209 43.478 0.00 0.00 37.34 1.73
1547 1615 9.942850 ATTTGCATAAGTGGCTTAGTTTTTATT 57.057 25.926 0.00 0.00 29.02 1.40
1549 1617 8.755696 TGCATAAGTGGCTTAGTTTTTATTTG 57.244 30.769 0.00 0.00 29.02 2.32
1555 1623 8.347729 AGTGGCTTAGTTTTTATTTGTTTTCG 57.652 30.769 0.00 0.00 0.00 3.46
1557 1625 8.053653 GTGGCTTAGTTTTTATTTGTTTTCGTG 58.946 33.333 0.00 0.00 0.00 4.35
1559 1627 8.974408 GGCTTAGTTTTTATTTGTTTTCGTGAT 58.026 29.630 0.00 0.00 0.00 3.06
1560 1628 9.989394 GCTTAGTTTTTATTTGTTTTCGTGATC 57.011 29.630 0.00 0.00 0.00 2.92
1568 1636 6.674005 ATTTGTTTTCGTGATCATTGAACG 57.326 33.333 11.57 4.83 38.64 3.95
1571 1639 4.034626 TGTTTTCGTGATCATTGAACGTGT 59.965 37.500 11.57 0.00 38.43 4.49
1576 1644 4.091365 TCGTGATCATTGAACGTGTCATTC 59.909 41.667 0.00 0.00 38.43 2.67
1577 1645 4.143137 CGTGATCATTGAACGTGTCATTCA 60.143 41.667 0.00 0.00 35.70 2.57
1578 1646 5.319139 GTGATCATTGAACGTGTCATTCAG 58.681 41.667 0.00 0.00 37.38 3.02
1589 1657 5.237815 ACGTGTCATTCAGAGCAGAAATTA 58.762 37.500 0.00 0.00 0.00 1.40
1603 1671 6.195700 AGCAGAAATTAGACCTGGAGTAGTA 58.804 40.000 0.00 0.00 0.00 1.82
1617 1685 6.037610 CCTGGAGTAGTATTCATTCAGTTTGC 59.962 42.308 0.00 0.00 0.00 3.68
1619 1687 7.847096 TGGAGTAGTATTCATTCAGTTTGCTA 58.153 34.615 0.00 0.00 0.00 3.49
1661 1744 2.282462 GGAACAGGGTGCTGGGTG 60.282 66.667 0.00 0.00 0.00 4.61
1669 1752 1.374947 GGTGCTGGGTGTCAAGCTA 59.625 57.895 0.00 0.00 0.00 3.32
1672 1755 1.065854 GTGCTGGGTGTCAAGCTATCT 60.066 52.381 0.00 0.00 0.00 1.98
1691 1774 3.303938 TCTGTGGATCTTTTGGGCAAAA 58.696 40.909 0.00 0.00 37.90 2.44
1722 1809 8.857886 GCATTACTGCCTGCTTGATTAGAAGC 62.858 46.154 0.00 0.00 44.14 3.86
1745 1832 9.830975 AAGCAGTTATTATTGTTTGTTTTTCCT 57.169 25.926 0.00 0.00 0.00 3.36
1776 1863 3.569701 ACATGTTGACATTTGGTGGTCTC 59.430 43.478 0.00 0.00 33.61 3.36
1777 1864 3.289407 TGTTGACATTTGGTGGTCTCA 57.711 42.857 0.00 0.00 35.11 3.27
1780 1932 5.569355 TGTTGACATTTGGTGGTCTCATAT 58.431 37.500 0.00 0.00 35.11 1.78
1796 1948 7.618117 TGGTCTCATATCCTACAAGTTACTTCA 59.382 37.037 0.00 0.00 0.00 3.02
1798 1950 7.650104 GTCTCATATCCTACAAGTTACTTCAGC 59.350 40.741 0.00 0.00 0.00 4.26
1836 1989 9.956640 AGAATTTCTCTGTCAATTTACTCTGAT 57.043 29.630 0.00 0.00 31.12 2.90
1866 2019 7.883833 AGAATGACATACTTATAGGCGAGACTA 59.116 37.037 0.00 0.00 0.00 2.59
1868 2021 7.199541 TGACATACTTATAGGCGAGACTAAC 57.800 40.000 0.00 0.00 0.00 2.34
1869 2022 6.996879 TGACATACTTATAGGCGAGACTAACT 59.003 38.462 0.00 0.00 0.00 2.24
1870 2023 7.501559 TGACATACTTATAGGCGAGACTAACTT 59.498 37.037 0.00 0.00 0.00 2.66
1871 2024 8.235359 ACATACTTATAGGCGAGACTAACTTT 57.765 34.615 0.00 0.00 0.00 2.66
1992 2155 2.997897 GAGGCTGAGGTCCACGGT 60.998 66.667 0.00 0.00 0.00 4.83
2037 2200 1.615116 CCTCCATTGCATGTGGTCAGT 60.615 52.381 15.83 0.00 37.96 3.41
2041 2204 1.881324 CATTGCATGTGGTCAGTGTCA 59.119 47.619 0.00 0.00 0.00 3.58
2046 2209 1.070601 CATGTGGTCAGTGTCAGGACA 59.929 52.381 0.00 0.00 39.32 4.02
2088 2251 1.037579 GCTGGGGTTCTAATGTGCCC 61.038 60.000 0.00 0.00 40.35 5.36
2096 2259 3.054655 GGTTCTAATGTGCCCAACCTAGA 60.055 47.826 0.00 0.00 34.74 2.43
2124 2287 3.823304 GGGAAGCATTGGATAAGATGTCC 59.177 47.826 0.00 0.00 36.26 4.02
2169 2332 1.409427 CGGATACTCCCACTGAAGGAC 59.591 57.143 0.00 0.00 31.13 3.85
2199 2362 5.520748 ACCAAGAAATCCCTACAAGTGAT 57.479 39.130 0.00 0.00 0.00 3.06
2355 2518 4.129737 CGGAGGAAAGCGAGGCGA 62.130 66.667 0.00 0.00 0.00 5.54
2442 2605 8.868522 AAGATAATGACTTGTCTGAAAATGGA 57.131 30.769 2.35 0.00 33.59 3.41
2625 2788 5.583457 TGATACTGATTCATGCACTGAACAG 59.417 40.000 21.85 21.85 46.37 3.16
2637 2800 7.392953 TCATGCACTGAACAGTTGGATAATTTA 59.607 33.333 4.63 0.00 40.20 1.40
2878 3041 4.252971 TCGGACCACTTTTACTTCTCTG 57.747 45.455 0.00 0.00 0.00 3.35
2881 3044 4.327680 GGACCACTTTTACTTCTCTGCAT 58.672 43.478 0.00 0.00 0.00 3.96
2899 3062 7.615365 TCTCTGCATCCATTTAAATTTGTACCT 59.385 33.333 0.00 0.00 0.00 3.08
3132 3297 1.689813 TCCGAGGCACAAAAGTGAGTA 59.310 47.619 0.00 0.00 0.00 2.59
3153 3322 5.864474 AGTAGTCAACTTCACTTAATGCTCG 59.136 40.000 0.00 0.00 33.35 5.03
3195 3364 3.378427 ACCTTTTGTTCTGTCACTTCTGC 59.622 43.478 0.00 0.00 0.00 4.26
3196 3365 3.629398 CCTTTTGTTCTGTCACTTCTGCT 59.371 43.478 0.00 0.00 0.00 4.24
3197 3366 4.497006 CCTTTTGTTCTGTCACTTCTGCTG 60.497 45.833 0.00 0.00 0.00 4.41
3198 3367 2.988010 TGTTCTGTCACTTCTGCTGT 57.012 45.000 0.00 0.00 0.00 4.40
3199 3368 2.826428 TGTTCTGTCACTTCTGCTGTC 58.174 47.619 0.00 0.00 0.00 3.51
3202 3371 3.309961 TCTGTCACTTCTGCTGTCATC 57.690 47.619 0.00 0.00 0.00 2.92
3218 3387 4.371786 TGTCATCAAGTGTGTCAACTCTC 58.628 43.478 0.00 0.00 29.93 3.20
3237 3413 7.414222 ACTCTCGTTAATTGTTCCCTGTATA 57.586 36.000 0.00 0.00 0.00 1.47
3291 3467 4.318760 CGCACATGTGGGATAAGTTTATCG 60.319 45.833 32.85 16.30 45.10 2.92
3339 3516 3.559655 TGACGTTCACTGAAGAATTGTGG 59.440 43.478 0.00 0.00 33.04 4.17
3364 3541 8.133627 GGTCTTTAGAATCAATGGTGATGAATG 58.866 37.037 0.00 0.00 44.02 2.67
3377 3554 2.306805 TGATGAATGCCCAGAACTCTGT 59.693 45.455 6.01 0.00 42.27 3.41
3419 3596 7.670979 AGTTCCATATGCATGCCTTGATATTTA 59.329 33.333 16.68 0.00 0.00 1.40
3450 3808 6.648192 ACATTCTATCTCTCTTTGGTGAAGG 58.352 40.000 0.00 0.00 35.98 3.46
3462 3820 5.997746 TCTTTGGTGAAGGAGACTGTAAATG 59.002 40.000 0.00 0.00 42.68 2.32
3467 3825 5.998363 GGTGAAGGAGACTGTAAATGTCTTT 59.002 40.000 0.00 0.00 43.88 2.52
3479 3837 5.473162 TGTAAATGTCTTTCAGTGTGATGGG 59.527 40.000 0.00 0.00 0.00 4.00
3493 3852 3.756802 TGGGTTTCCATGTGTGCG 58.243 55.556 0.00 0.00 38.32 5.34
3507 3866 4.039151 TGTGTGCGTTCATGTTCATTTT 57.961 36.364 0.00 0.00 0.00 1.82
3510 3869 5.855925 TGTGTGCGTTCATGTTCATTTTATC 59.144 36.000 0.00 0.00 0.00 1.75
3526 3885 8.648557 TCATTTTATCTCTTTGTCTGGATACG 57.351 34.615 0.00 0.00 42.51 3.06
3527 3886 6.903883 TTTTATCTCTTTGTCTGGATACGC 57.096 37.500 0.00 0.00 42.51 4.42
3532 3891 3.093814 TCTTTGTCTGGATACGCTGGTA 58.906 45.455 0.00 0.00 42.51 3.25
3668 4028 4.271291 GGAAGAGATGCCGTCATTAAGAAC 59.729 45.833 0.00 0.00 31.96 3.01
3844 4212 9.036980 ACTTAGTTTATACTCTCATGGTGTCTT 57.963 33.333 0.00 0.00 35.78 3.01
3845 4213 9.307121 CTTAGTTTATACTCTCATGGTGTCTTG 57.693 37.037 0.00 0.00 35.78 3.02
3856 4224 4.104102 TCATGGTGTCTTGGTTACCTCTTT 59.896 41.667 2.07 0.00 35.51 2.52
3860 4228 5.104444 TGGTGTCTTGGTTACCTCTTTTACA 60.104 40.000 2.07 0.00 35.51 2.41
3917 4285 7.504926 AGAGGAATAACTGTGGTAACCATTA 57.495 36.000 0.00 0.00 35.28 1.90
3920 4288 8.383374 AGGAATAACTGTGGTAACCATTACTA 57.617 34.615 0.00 0.00 35.28 1.82
3990 4358 0.949105 GCGGCGAGAAGAAAGTGGAA 60.949 55.000 12.98 0.00 0.00 3.53
4044 4412 1.376683 CAGCGGGAAACGGAATCCA 60.377 57.895 0.00 0.00 44.51 3.41
4100 4468 3.131400 GTCACCTGTTTGCCCTTTTGTTA 59.869 43.478 0.00 0.00 0.00 2.41
4103 4471 2.698274 CCTGTTTGCCCTTTTGTTACCT 59.302 45.455 0.00 0.00 0.00 3.08
4104 4472 3.243737 CCTGTTTGCCCTTTTGTTACCTC 60.244 47.826 0.00 0.00 0.00 3.85
4126 4494 3.544684 TGTCATCCATGGCATTGTAGTC 58.455 45.455 6.96 0.00 37.51 2.59
4132 4500 1.328680 CATGGCATTGTAGTCTCGCAC 59.671 52.381 0.00 0.00 0.00 5.34
4140 4510 5.692204 GCATTGTAGTCTCGCACTATGTAAT 59.308 40.000 0.00 0.00 39.90 1.89
4143 4513 6.445357 TGTAGTCTCGCACTATGTAATGAA 57.555 37.500 0.00 0.00 39.90 2.57
4215 4585 9.817809 TCTACTAGATTTAAGCATGTAAGGTTG 57.182 33.333 0.00 0.00 0.00 3.77
4220 4590 4.497473 TTAAGCATGTAAGGTTGCACAC 57.503 40.909 0.00 0.00 41.35 3.82
4223 4593 2.554032 AGCATGTAAGGTTGCACACTTC 59.446 45.455 5.41 0.41 41.35 3.01
4224 4594 2.351738 GCATGTAAGGTTGCACACTTCC 60.352 50.000 5.41 0.00 38.72 3.46
4248 4618 6.982141 CCGCAACATCTATGTAAGGTTTACTA 59.018 38.462 0.00 0.00 40.80 1.82
4249 4619 7.042925 CCGCAACATCTATGTAAGGTTTACTAC 60.043 40.741 0.00 0.00 40.80 2.73
4250 4620 7.705325 CGCAACATCTATGTAAGGTTTACTACT 59.295 37.037 0.00 0.00 40.80 2.57
4251 4621 9.379791 GCAACATCTATGTAAGGTTTACTACTT 57.620 33.333 0.00 0.00 40.80 2.24
4267 4640 9.356433 GTTTACTACTTCAGAAAGGACATCTAC 57.644 37.037 0.00 0.00 36.78 2.59
4280 4653 4.464951 AGGACATCTACGTAATGTTGGTGA 59.535 41.667 18.17 3.01 36.67 4.02
4293 4666 9.169468 CGTAATGTTGGTGATTTATTATTGCTC 57.831 33.333 0.00 0.00 0.00 4.26
4316 4690 5.417266 TCTTCTGTATCAACTCCACTGAGAG 59.583 44.000 0.00 0.00 41.42 3.20
4318 4692 4.702612 TCTGTATCAACTCCACTGAGAGTC 59.297 45.833 5.77 0.00 46.44 3.36
4348 4723 9.204570 CAAATTCTTTGAATGCAAGATCTCTTT 57.795 29.630 0.00 0.00 43.26 2.52
4352 4727 6.713903 TCTTTGAATGCAAGATCTCTTTGAGT 59.286 34.615 0.00 0.00 35.04 3.41
4353 4728 6.889301 TTGAATGCAAGATCTCTTTGAGTT 57.111 33.333 0.00 0.00 33.11 3.01
4355 4730 5.182570 TGAATGCAAGATCTCTTTGAGTTGG 59.817 40.000 0.00 0.00 33.11 3.77
4357 4732 4.321718 TGCAAGATCTCTTTGAGTTGGAG 58.678 43.478 0.00 0.00 33.11 3.86
4358 4733 3.126686 GCAAGATCTCTTTGAGTTGGAGC 59.873 47.826 0.00 0.00 33.11 4.70
4359 4734 4.321718 CAAGATCTCTTTGAGTTGGAGCA 58.678 43.478 0.00 0.00 33.11 4.26
4360 4735 4.205065 AGATCTCTTTGAGTTGGAGCAG 57.795 45.455 0.00 0.00 0.00 4.24
4361 4736 2.175878 TCTCTTTGAGTTGGAGCAGC 57.824 50.000 0.00 0.00 0.00 5.25
4362 4737 1.417517 TCTCTTTGAGTTGGAGCAGCA 59.582 47.619 0.00 0.00 0.00 4.41
4363 4738 2.158769 TCTCTTTGAGTTGGAGCAGCAA 60.159 45.455 0.00 0.00 0.00 3.91
4364 4739 2.818432 CTCTTTGAGTTGGAGCAGCAAT 59.182 45.455 0.00 0.00 0.00 3.56
4365 4740 4.005650 CTCTTTGAGTTGGAGCAGCAATA 58.994 43.478 0.00 0.00 0.00 1.90
4367 4742 5.012239 TCTTTGAGTTGGAGCAGCAATATT 58.988 37.500 0.00 0.00 0.00 1.28
4390 4796 0.589223 TGCCAAACTTTTAGCGACGG 59.411 50.000 0.00 0.00 0.00 4.79
4391 4797 0.728129 GCCAAACTTTTAGCGACGGC 60.728 55.000 0.00 0.00 40.37 5.68
4403 4809 0.796312 GCGACGGCTGAAAGATTCAA 59.204 50.000 0.00 0.00 39.58 2.69
4404 4810 1.196808 GCGACGGCTGAAAGATTCAAA 59.803 47.619 0.00 0.00 39.58 2.69
4412 4818 8.243289 ACGGCTGAAAGATTCAAATTAATTTG 57.757 30.769 27.80 27.80 42.08 2.32
4413 4819 7.331687 ACGGCTGAAAGATTCAAATTAATTTGG 59.668 33.333 30.96 17.56 41.47 3.28
4432 4890 4.316025 TGGAAGGATTTTTGGAGTAGGG 57.684 45.455 0.00 0.00 0.00 3.53
4439 4897 6.427441 AGGATTTTTGGAGTAGGGATTCTTC 58.573 40.000 0.00 0.00 0.00 2.87
4447 4905 3.898741 GAGTAGGGATTCTTCTAGGTGGG 59.101 52.174 0.00 0.00 0.00 4.61
4459 4917 3.153919 TCTAGGTGGGTGTTTGATTTGC 58.846 45.455 0.00 0.00 0.00 3.68
4463 4921 1.686052 GTGGGTGTTTGATTTGCAGGA 59.314 47.619 0.00 0.00 0.00 3.86
4464 4922 1.686052 TGGGTGTTTGATTTGCAGGAC 59.314 47.619 0.00 0.00 0.00 3.85
4467 4925 1.336755 GTGTTTGATTTGCAGGACCGT 59.663 47.619 0.00 0.00 0.00 4.83
4468 4926 1.336440 TGTTTGATTTGCAGGACCGTG 59.664 47.619 0.00 0.00 0.00 4.94
4469 4927 1.606668 GTTTGATTTGCAGGACCGTGA 59.393 47.619 0.00 0.00 0.00 4.35
4472 4930 3.558931 TGATTTGCAGGACCGTGATAT 57.441 42.857 0.00 0.00 0.00 1.63
4473 4931 3.205338 TGATTTGCAGGACCGTGATATG 58.795 45.455 0.00 0.00 0.00 1.78
4474 4932 3.118445 TGATTTGCAGGACCGTGATATGA 60.118 43.478 0.00 0.00 0.00 2.15
4475 4933 3.558931 TTTGCAGGACCGTGATATGAT 57.441 42.857 0.00 0.00 0.00 2.45
4477 4935 4.681074 TTGCAGGACCGTGATATGATAA 57.319 40.909 0.00 0.00 0.00 1.75
4478 4936 4.257267 TGCAGGACCGTGATATGATAAG 57.743 45.455 0.00 0.00 0.00 1.73
4479 4937 3.895041 TGCAGGACCGTGATATGATAAGA 59.105 43.478 0.00 0.00 0.00 2.10
4480 4938 4.238514 GCAGGACCGTGATATGATAAGAC 58.761 47.826 0.00 0.00 0.00 3.01
4481 4939 4.021894 GCAGGACCGTGATATGATAAGACT 60.022 45.833 0.00 0.00 0.00 3.24
4482 4940 5.183331 GCAGGACCGTGATATGATAAGACTA 59.817 44.000 0.00 0.00 0.00 2.59
4488 4948 7.831753 ACCGTGATATGATAAGACTATTCAGG 58.168 38.462 0.00 0.00 0.00 3.86
4491 4951 7.757173 CGTGATATGATAAGACTATTCAGGTGG 59.243 40.741 0.00 0.00 0.00 4.61
4499 4959 6.884280 AAGACTATTCAGGTGGTTTCTTTG 57.116 37.500 0.00 0.00 0.00 2.77
4508 4968 3.632145 AGGTGGTTTCTTTGTGCTAACTG 59.368 43.478 0.00 0.00 0.00 3.16
4513 4973 6.856426 GTGGTTTCTTTGTGCTAACTGTATTC 59.144 38.462 0.00 0.00 0.00 1.75
4515 4975 5.856126 TTCTTTGTGCTAACTGTATTCCG 57.144 39.130 0.00 0.00 0.00 4.30
4529 4989 8.575649 AACTGTATTCCGTAGAAAATTTCCAT 57.424 30.769 1.57 0.00 35.09 3.41
4537 4997 6.072175 TCCGTAGAAAATTTCCATTGACCTTG 60.072 38.462 1.57 0.00 0.00 3.61
4538 4998 6.072175 CCGTAGAAAATTTCCATTGACCTTGA 60.072 38.462 1.57 0.00 0.00 3.02
4616 5139 4.371624 ACATTTTCTCCACTCACATGGA 57.628 40.909 0.00 0.00 46.92 3.41
4655 5210 9.478019 GTTCAACATCATAACTTGTTATTCGAG 57.522 33.333 3.52 0.00 34.42 4.04
4663 5218 4.367386 ACTTGTTATTCGAGTACTCCCG 57.633 45.455 17.23 7.46 38.86 5.14
4664 5219 3.129988 ACTTGTTATTCGAGTACTCCCGG 59.870 47.826 17.23 3.66 38.86 5.73
4666 5221 3.355378 TGTTATTCGAGTACTCCCGGAA 58.645 45.455 17.23 14.42 0.00 4.30
4667 5222 3.129287 TGTTATTCGAGTACTCCCGGAAC 59.871 47.826 17.23 15.35 0.00 3.62
4672 5227 2.094390 TCGAGTACTCCCGGAACAAATG 60.094 50.000 17.23 0.00 0.00 2.32
4681 5236 3.254657 TCCCGGAACAAATGTTTGCTAAG 59.745 43.478 0.73 0.00 41.79 2.18
4682 5237 3.005367 CCCGGAACAAATGTTTGCTAAGT 59.995 43.478 0.73 0.00 41.79 2.24
4727 5283 3.631686 AGCTCACATTTGCACTTTACACA 59.368 39.130 0.00 0.00 0.00 3.72
4795 5351 7.695055 TGAAAGAATTATGTCCAACCTAAGGA 58.305 34.615 0.00 0.00 0.00 3.36
4899 5455 7.086376 CACCTCTTTCCATTTTTCATACACAG 58.914 38.462 0.00 0.00 0.00 3.66
4910 5466 5.361135 TTTCATACACAGCATGAACACAG 57.639 39.130 0.00 0.00 41.02 3.66
4912 5468 4.640364 TCATACACAGCATGAACACAGAA 58.360 39.130 0.00 0.00 39.69 3.02
4913 5469 4.452114 TCATACACAGCATGAACACAGAAC 59.548 41.667 0.00 0.00 39.69 3.01
4915 5471 3.016031 ACACAGCATGAACACAGAACAA 58.984 40.909 0.00 0.00 39.69 2.83
4921 5477 6.036300 ACAGCATGAACACAGAACAAATTTTG 59.964 34.615 7.59 7.59 39.69 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.507944 GATCTGGGCGTGGCTGAT 59.492 61.111 0.00 0.00 0.00 2.90
35 36 0.025256 GTTTGTTCGTTCGTGCGTCA 59.975 50.000 1.99 1.43 0.00 4.35
36 37 0.652465 GGTTTGTTCGTTCGTGCGTC 60.652 55.000 1.99 0.00 0.00 5.19
49 53 1.237285 GCATCGCTCACAGGGTTTGT 61.237 55.000 0.00 0.00 41.94 2.83
52 56 1.672356 GTGCATCGCTCACAGGGTT 60.672 57.895 0.00 0.00 34.73 4.11
58 62 1.413767 CGGTACTGTGCATCGCTCAC 61.414 60.000 0.00 0.00 35.14 3.51
59 63 1.153842 CGGTACTGTGCATCGCTCA 60.154 57.895 0.00 0.00 0.00 4.26
60 64 2.517450 GCGGTACTGTGCATCGCTC 61.517 63.158 10.99 0.00 42.62 5.03
66 70 4.429212 ATCGCGCGGTACTGTGCA 62.429 61.111 33.09 22.56 45.47 4.57
92 96 0.822164 CTTAGGGTTCGTCCGTGGAT 59.178 55.000 0.00 0.00 37.00 3.41
95 99 0.320073 TTGCTTAGGGTTCGTCCGTG 60.320 55.000 5.25 0.00 37.00 4.94
99 103 1.197036 GTGCTTTGCTTAGGGTTCGTC 59.803 52.381 0.00 0.00 0.00 4.20
101 105 1.069227 GTGTGCTTTGCTTAGGGTTCG 60.069 52.381 0.00 0.00 0.00 3.95
108 112 2.778299 CCTACCAGTGTGCTTTGCTTA 58.222 47.619 0.00 0.00 0.00 3.09
110 114 0.890996 GCCTACCAGTGTGCTTTGCT 60.891 55.000 0.00 0.00 0.00 3.91
117 121 0.250124 TTTGTCCGCCTACCAGTGTG 60.250 55.000 0.00 0.00 0.00 3.82
121 125 0.608640 AGTCTTTGTCCGCCTACCAG 59.391 55.000 0.00 0.00 0.00 4.00
134 138 0.526662 CCGACGCTAGTCCAGTCTTT 59.473 55.000 0.00 0.00 44.28 2.52
161 165 0.605319 TCACAAGGTGCGATTGGTCC 60.605 55.000 0.00 0.00 32.98 4.46
162 166 1.197721 CTTCACAAGGTGCGATTGGTC 59.802 52.381 0.00 0.00 32.98 4.02
681 707 3.105283 AGGGGCCTGTACGGATAATATC 58.895 50.000 0.84 0.00 33.16 1.63
682 708 3.105283 GAGGGGCCTGTACGGATAATAT 58.895 50.000 0.84 0.00 33.16 1.28
688 714 0.912487 AAATGAGGGGCCTGTACGGA 60.912 55.000 0.84 0.00 33.16 4.69
691 717 1.005450 TGGAAAATGAGGGGCCTGTAC 59.995 52.381 0.84 0.00 0.00 2.90
692 718 1.377690 TGGAAAATGAGGGGCCTGTA 58.622 50.000 0.84 0.00 0.00 2.74
693 719 0.486879 TTGGAAAATGAGGGGCCTGT 59.513 50.000 0.84 0.00 0.00 4.00
698 724 3.066760 GCGAATAGTTGGAAAATGAGGGG 59.933 47.826 0.00 0.00 0.00 4.79
710 736 2.346847 GCTGAGAGTGTGCGAATAGTTG 59.653 50.000 0.00 0.00 0.00 3.16
712 738 1.821753 AGCTGAGAGTGTGCGAATAGT 59.178 47.619 0.00 0.00 0.00 2.12
729 755 2.186384 GAGTGGCGCAGATCAGCT 59.814 61.111 10.83 0.00 0.00 4.24
751 777 8.971321 CACAAGAACATTTAATCCAACTTTCAG 58.029 33.333 0.00 0.00 0.00 3.02
753 779 7.384932 CCCACAAGAACATTTAATCCAACTTTC 59.615 37.037 0.00 0.00 0.00 2.62
755 781 6.239572 CCCCACAAGAACATTTAATCCAACTT 60.240 38.462 0.00 0.00 0.00 2.66
756 782 5.245977 CCCCACAAGAACATTTAATCCAACT 59.754 40.000 0.00 0.00 0.00 3.16
759 785 4.093011 CCCCCACAAGAACATTTAATCCA 58.907 43.478 0.00 0.00 0.00 3.41
761 787 3.769300 AGCCCCCACAAGAACATTTAATC 59.231 43.478 0.00 0.00 0.00 1.75
767 793 0.482446 TCAAGCCCCCACAAGAACAT 59.518 50.000 0.00 0.00 0.00 2.71
771 797 1.792757 ATGCTCAAGCCCCCACAAGA 61.793 55.000 0.00 0.00 41.18 3.02
782 808 2.229543 TGCTGCCAGTTTTATGCTCAAG 59.770 45.455 0.00 0.00 0.00 3.02
789 815 4.498009 GCACGATTATGCTGCCAGTTTTAT 60.498 41.667 0.00 0.00 42.62 1.40
798 824 0.039798 CCATGGCACGATTATGCTGC 60.040 55.000 0.00 0.00 45.38 5.25
800 826 2.334307 GCCATGGCACGATTATGCT 58.666 52.632 32.08 0.00 45.38 3.79
830 856 2.360767 GCCCATCATTTGCCTGGCA 61.361 57.895 19.30 19.30 38.73 4.92
831 857 2.502577 GCCCATCATTTGCCTGGC 59.497 61.111 12.87 12.87 0.00 4.85
832 858 2.788640 CGGCCCATCATTTGCCTGG 61.789 63.158 0.00 0.00 43.12 4.45
833 859 2.053865 ACGGCCCATCATTTGCCTG 61.054 57.895 0.00 0.00 43.12 4.85
834 860 2.053865 CACGGCCCATCATTTGCCT 61.054 57.895 0.00 0.00 43.12 4.75
835 861 2.495866 CACGGCCCATCATTTGCC 59.504 61.111 0.00 0.00 41.85 4.52
836 862 2.202783 GCACGGCCCATCATTTGC 60.203 61.111 0.00 0.00 0.00 3.68
837 863 2.495866 GGCACGGCCCATCATTTG 59.504 61.111 0.00 0.00 44.06 2.32
853 879 3.302344 CCAAACAGGCCGGGTTGG 61.302 66.667 33.96 33.96 42.50 3.77
862 888 1.909700 TTAAGAGCTGGCCAAACAGG 58.090 50.000 7.01 0.00 38.90 4.00
863 889 4.525912 AAATTAAGAGCTGGCCAAACAG 57.474 40.909 7.01 0.00 41.41 3.16
864 890 4.082245 GCTAAATTAAGAGCTGGCCAAACA 60.082 41.667 7.01 0.00 35.73 2.83
865 891 4.424626 GCTAAATTAAGAGCTGGCCAAAC 58.575 43.478 7.01 1.16 35.73 2.93
866 892 3.128589 CGCTAAATTAAGAGCTGGCCAAA 59.871 43.478 7.01 0.00 36.50 3.28
867 893 2.682856 CGCTAAATTAAGAGCTGGCCAA 59.317 45.455 7.01 0.00 36.50 4.52
868 894 2.093181 TCGCTAAATTAAGAGCTGGCCA 60.093 45.455 4.71 4.71 36.50 5.36
869 895 2.288186 GTCGCTAAATTAAGAGCTGGCC 59.712 50.000 0.00 0.00 36.50 5.36
870 896 2.936498 TGTCGCTAAATTAAGAGCTGGC 59.064 45.455 0.00 0.00 36.50 4.85
871 897 5.545658 TTTGTCGCTAAATTAAGAGCTGG 57.454 39.130 0.00 0.00 36.50 4.85
872 898 8.604035 TCTATTTTGTCGCTAAATTAAGAGCTG 58.396 33.333 0.00 1.11 36.50 4.24
873 899 8.718102 TCTATTTTGTCGCTAAATTAAGAGCT 57.282 30.769 0.00 0.00 36.50 4.09
874 900 9.427127 CTTCTATTTTGTCGCTAAATTAAGAGC 57.573 33.333 5.11 0.00 35.24 4.09
875 901 9.922305 CCTTCTATTTTGTCGCTAAATTAAGAG 57.078 33.333 14.53 0.00 0.00 2.85
876 902 8.889717 CCCTTCTATTTTGTCGCTAAATTAAGA 58.110 33.333 14.53 7.97 0.00 2.10
877 903 8.129211 CCCCTTCTATTTTGTCGCTAAATTAAG 58.871 37.037 5.11 8.34 0.00 1.85
878 904 7.067737 CCCCCTTCTATTTTGTCGCTAAATTAA 59.932 37.037 5.11 0.00 0.00 1.40
879 905 6.544564 CCCCCTTCTATTTTGTCGCTAAATTA 59.455 38.462 5.11 0.00 0.00 1.40
880 906 5.359860 CCCCCTTCTATTTTGTCGCTAAATT 59.640 40.000 5.11 0.00 0.00 1.82
881 907 4.887655 CCCCCTTCTATTTTGTCGCTAAAT 59.112 41.667 5.14 5.14 0.00 1.40
882 908 4.266714 CCCCCTTCTATTTTGTCGCTAAA 58.733 43.478 0.00 0.00 0.00 1.85
889 915 4.089361 CTCTTTGCCCCCTTCTATTTTGT 58.911 43.478 0.00 0.00 0.00 2.83
921 947 3.810896 CGCGCTAGGGTTTTGGGC 61.811 66.667 5.56 0.00 36.50 5.36
956 983 2.266372 CTCTGCTGCTGCTGCTCT 59.734 61.111 27.67 0.00 40.48 4.09
957 984 3.501548 GCTCTGCTGCTGCTGCTC 61.502 66.667 27.67 13.26 40.48 4.26
966 993 2.045536 GAGGGGGTTGCTCTGCTG 60.046 66.667 0.00 0.00 0.00 4.41
967 994 3.334054 GGAGGGGGTTGCTCTGCT 61.334 66.667 0.00 0.00 0.00 4.24
968 995 4.432741 GGGAGGGGGTTGCTCTGC 62.433 72.222 0.00 0.00 0.00 4.26
971 998 3.412408 GAGGGGAGGGGGTTGCTC 61.412 72.222 0.00 0.00 0.00 4.26
974 1001 4.371231 AGGGAGGGGAGGGGGTTG 62.371 72.222 0.00 0.00 0.00 3.77
975 1002 4.040198 GAGGGAGGGGAGGGGGTT 62.040 72.222 0.00 0.00 0.00 4.11
978 1005 4.179599 GAGGAGGGAGGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
979 1006 4.548513 CGAGGAGGGAGGGGAGGG 62.549 77.778 0.00 0.00 0.00 4.30
980 1007 4.548513 CCGAGGAGGGAGGGGAGG 62.549 77.778 0.00 0.00 35.97 4.30
1387 1414 0.179111 TGGCTAAGCATTCGACCTCG 60.179 55.000 0.00 0.00 41.45 4.63
1388 1415 1.576356 CTGGCTAAGCATTCGACCTC 58.424 55.000 0.00 0.00 0.00 3.85
1406 1438 2.041701 AGAAAAATGGTTGCAGTGGCT 58.958 42.857 0.00 0.00 41.91 4.75
1414 1446 6.272318 TCTAGCAACAACAGAAAAATGGTTG 58.728 36.000 0.00 0.00 45.52 3.77
1415 1447 6.463995 TCTAGCAACAACAGAAAAATGGTT 57.536 33.333 0.00 0.00 0.00 3.67
1422 1454 6.369890 CAGCTCTATTCTAGCAACAACAGAAA 59.630 38.462 0.00 0.00 42.62 2.52
1423 1455 5.871524 CAGCTCTATTCTAGCAACAACAGAA 59.128 40.000 0.00 0.00 42.62 3.02
1425 1457 5.414360 TCAGCTCTATTCTAGCAACAACAG 58.586 41.667 0.00 0.00 42.62 3.16
1426 1458 5.405935 TCAGCTCTATTCTAGCAACAACA 57.594 39.130 0.00 0.00 42.62 3.33
1427 1459 6.370166 AGTTTCAGCTCTATTCTAGCAACAAC 59.630 38.462 0.00 0.00 42.62 3.32
1428 1460 6.467677 AGTTTCAGCTCTATTCTAGCAACAA 58.532 36.000 0.00 0.00 42.62 2.83
1430 1462 6.255453 CAGAGTTTCAGCTCTATTCTAGCAAC 59.745 42.308 0.00 0.00 43.37 4.17
1431 1463 6.336566 CAGAGTTTCAGCTCTATTCTAGCAA 58.663 40.000 0.00 0.00 43.37 3.91
1432 1464 5.680922 GCAGAGTTTCAGCTCTATTCTAGCA 60.681 44.000 0.00 0.00 43.37 3.49
1433 1465 4.744631 GCAGAGTTTCAGCTCTATTCTAGC 59.255 45.833 0.00 0.00 43.37 3.42
1434 1466 5.900425 TGCAGAGTTTCAGCTCTATTCTAG 58.100 41.667 0.00 0.00 43.37 2.43
1436 1468 4.222588 ACTGCAGAGTTTCAGCTCTATTCT 59.777 41.667 23.35 0.00 43.37 2.40
1447 1486 3.381949 AGTTCACGTACTGCAGAGTTTC 58.618 45.455 23.35 9.35 33.21 2.78
1452 1491 2.924903 CGTTAGTTCACGTACTGCAGA 58.075 47.619 23.35 0.48 35.34 4.26
1461 1500 5.672051 TGAGCAAATTAACGTTAGTTCACG 58.328 37.500 15.36 9.11 46.04 4.35
1462 1501 6.461698 CGATGAGCAAATTAACGTTAGTTCAC 59.538 38.462 15.36 10.87 41.49 3.18
1463 1502 6.366604 TCGATGAGCAAATTAACGTTAGTTCA 59.633 34.615 15.36 13.54 41.49 3.18
1467 1506 7.692291 ACAAATCGATGAGCAAATTAACGTTAG 59.308 33.333 8.23 0.00 0.00 2.34
1468 1507 7.523219 ACAAATCGATGAGCAAATTAACGTTA 58.477 30.769 3.29 3.29 0.00 3.18
1472 1511 8.313931 GCTAAACAAATCGATGAGCAAATTAAC 58.686 33.333 0.00 0.00 0.00 2.01
1475 1514 6.624423 AGCTAAACAAATCGATGAGCAAATT 58.376 32.000 0.00 0.00 0.00 1.82
1497 1541 1.873591 CATCCCGTGCCTATAACAAGC 59.126 52.381 0.00 0.00 0.00 4.01
1499 1543 3.389656 TCATCATCCCGTGCCTATAACAA 59.610 43.478 0.00 0.00 0.00 2.83
1500 1544 2.969262 TCATCATCCCGTGCCTATAACA 59.031 45.455 0.00 0.00 0.00 2.41
1509 1556 4.276678 ACTTATGCAAATCATCATCCCGTG 59.723 41.667 0.00 0.00 36.63 4.94
1511 1558 4.320714 CCACTTATGCAAATCATCATCCCG 60.321 45.833 0.00 0.00 36.63 5.14
1512 1559 4.560108 GCCACTTATGCAAATCATCATCCC 60.560 45.833 0.00 0.00 36.63 3.85
1531 1599 8.053653 CACGAAAACAAATAAAAACTAAGCCAC 58.946 33.333 0.00 0.00 0.00 5.01
1547 1615 4.966970 CACGTTCAATGATCACGAAAACAA 59.033 37.500 13.54 0.00 37.37 2.83
1549 1617 4.523813 ACACGTTCAATGATCACGAAAAC 58.476 39.130 13.54 6.52 37.37 2.43
1553 1621 3.019933 TGACACGTTCAATGATCACGA 57.980 42.857 13.54 1.35 37.37 4.35
1554 1622 3.997319 ATGACACGTTCAATGATCACG 57.003 42.857 0.00 5.99 37.92 4.35
1555 1623 5.120674 TCTGAATGACACGTTCAATGATCAC 59.879 40.000 0.00 0.00 37.92 3.06
1557 1625 5.726138 GCTCTGAATGACACGTTCAATGATC 60.726 44.000 7.60 0.00 37.92 2.92
1559 1627 3.433274 GCTCTGAATGACACGTTCAATGA 59.567 43.478 7.60 2.97 37.92 2.57
1560 1628 3.187022 TGCTCTGAATGACACGTTCAATG 59.813 43.478 7.60 5.16 37.92 2.82
1561 1629 3.402110 TGCTCTGAATGACACGTTCAAT 58.598 40.909 7.60 0.00 37.92 2.57
1562 1630 2.802247 CTGCTCTGAATGACACGTTCAA 59.198 45.455 7.60 0.55 37.92 2.69
1566 1634 2.820059 TTCTGCTCTGAATGACACGT 57.180 45.000 0.00 0.00 0.00 4.49
1568 1636 6.183360 GGTCTAATTTCTGCTCTGAATGACAC 60.183 42.308 0.00 0.00 0.00 3.67
1571 1639 6.111382 CAGGTCTAATTTCTGCTCTGAATGA 58.889 40.000 0.00 0.00 0.00 2.57
1576 1644 4.081198 ACTCCAGGTCTAATTTCTGCTCTG 60.081 45.833 0.00 0.00 0.00 3.35
1577 1645 4.100373 ACTCCAGGTCTAATTTCTGCTCT 58.900 43.478 0.00 0.00 0.00 4.09
1578 1646 4.479786 ACTCCAGGTCTAATTTCTGCTC 57.520 45.455 0.00 0.00 0.00 4.26
1589 1657 6.198639 ACTGAATGAATACTACTCCAGGTCT 58.801 40.000 0.00 0.00 0.00 3.85
1603 1671 8.980596 TCCCAAATAATAGCAAACTGAATGAAT 58.019 29.630 0.00 0.00 0.00 2.57
1617 1685 4.618927 CGCATGCCCAATCCCAAATAATAG 60.619 45.833 13.15 0.00 0.00 1.73
1619 1687 2.037511 CGCATGCCCAATCCCAAATAAT 59.962 45.455 13.15 0.00 0.00 1.28
1622 1690 0.977108 ACGCATGCCCAATCCCAAAT 60.977 50.000 13.15 0.00 0.00 2.32
1623 1691 0.323816 TACGCATGCCCAATCCCAAA 60.324 50.000 13.15 0.00 0.00 3.28
1659 1742 4.399004 AGATCCACAGATAGCTTGACAC 57.601 45.455 0.00 0.00 30.90 3.67
1661 1744 5.065731 CCAAAAGATCCACAGATAGCTTGAC 59.934 44.000 0.00 0.00 30.90 3.18
1669 1752 2.905415 TGCCCAAAAGATCCACAGAT 57.095 45.000 0.00 0.00 34.57 2.90
1745 1832 6.208402 ACCAAATGTCAACATGTTGCAGTATA 59.792 34.615 29.84 14.01 40.24 1.47
1746 1833 5.010922 ACCAAATGTCAACATGTTGCAGTAT 59.989 36.000 29.84 18.29 40.24 2.12
1747 1834 4.340666 ACCAAATGTCAACATGTTGCAGTA 59.659 37.500 29.84 17.06 40.24 2.74
1776 1863 7.492524 TCTGCTGAAGTAACTTGTAGGATATG 58.507 38.462 0.00 0.00 0.00 1.78
1777 1864 7.661536 TCTGCTGAAGTAACTTGTAGGATAT 57.338 36.000 0.00 0.00 0.00 1.63
1780 1932 5.801531 TTCTGCTGAAGTAACTTGTAGGA 57.198 39.130 1.33 0.00 0.00 2.94
1834 1987 9.509855 CGCCTATAAGTATGTCATTCTTAGATC 57.490 37.037 14.80 6.94 0.00 2.75
1835 1988 9.244292 TCGCCTATAAGTATGTCATTCTTAGAT 57.756 33.333 14.80 5.71 0.00 1.98
1836 1989 8.631480 TCGCCTATAAGTATGTCATTCTTAGA 57.369 34.615 14.80 10.69 0.00 2.10
1844 1997 6.996879 AGTTAGTCTCGCCTATAAGTATGTCA 59.003 38.462 0.00 0.00 0.00 3.58
1845 1998 7.437793 AGTTAGTCTCGCCTATAAGTATGTC 57.562 40.000 0.00 0.00 0.00 3.06
1866 2019 8.472413 ACTGCAAGCAATGATGATATAAAAGTT 58.528 29.630 0.00 0.00 37.60 2.66
1868 2021 8.752254 CAACTGCAAGCAATGATGATATAAAAG 58.248 33.333 0.00 0.00 37.60 2.27
1869 2022 8.252417 ACAACTGCAAGCAATGATGATATAAAA 58.748 29.630 12.65 0.00 37.60 1.52
1870 2023 7.774134 ACAACTGCAAGCAATGATGATATAAA 58.226 30.769 12.65 0.00 37.60 1.40
1871 2024 7.067251 TGACAACTGCAAGCAATGATGATATAA 59.933 33.333 12.65 0.00 37.60 0.98
1932 2095 8.593842 GCGATAATCTTCATATCAACATCTGAG 58.406 37.037 0.00 0.00 37.52 3.35
1992 2155 2.364973 TCCCGCAGATGGCTGGTA 60.365 61.111 0.00 0.00 46.16 3.25
2023 2186 1.596603 CTGACACTGACCACATGCAA 58.403 50.000 0.00 0.00 0.00 4.08
2037 2200 1.883638 GCCTCTTGCAATGTCCTGACA 60.884 52.381 0.00 1.93 42.33 3.58
2041 2204 0.034670 GGAGCCTCTTGCAATGTCCT 60.035 55.000 0.00 0.00 44.83 3.85
2076 2239 4.534500 TCTTCTAGGTTGGGCACATTAGAA 59.466 41.667 13.97 13.97 34.45 2.10
2088 2251 2.303022 TGCTTCCCACTCTTCTAGGTTG 59.697 50.000 0.00 0.00 0.00 3.77
2096 2259 4.228210 TCTTATCCAATGCTTCCCACTCTT 59.772 41.667 0.00 0.00 0.00 2.85
2124 2287 2.028125 TAAGATTCCCGCCTGCCTCG 62.028 60.000 0.00 0.00 0.00 4.63
2199 2362 6.413783 TGTGTCTCAGAAATACTGTTGGTA 57.586 37.500 0.00 0.00 45.86 3.25
2377 2540 7.702348 AGCAACAGAACTTGTATCAAAACTTTC 59.298 33.333 0.00 0.00 39.73 2.62
2442 2605 1.412074 GGGCCATCCACTGAATCCAAT 60.412 52.381 4.39 0.00 35.00 3.16
2637 2800 4.583489 TCCTCGGTCTCGCTTTTTATATCT 59.417 41.667 0.00 0.00 36.13 1.98
2649 2812 1.241990 TGACACCTTCCTCGGTCTCG 61.242 60.000 0.00 0.00 34.29 4.04
2893 3056 8.482943 TGAGCAAGCTTCTATAAATAAGGTACA 58.517 33.333 0.00 0.00 33.32 2.90
3132 3297 3.433615 GCGAGCATTAAGTGAAGTTGACT 59.566 43.478 0.00 0.00 0.00 3.41
3153 3322 6.241882 AGGTCTAGGGAATAGAAAAAGAGC 57.758 41.667 0.00 0.00 42.23 4.09
3195 3364 4.375272 AGAGTTGACACACTTGATGACAG 58.625 43.478 0.00 0.00 0.00 3.51
3196 3365 4.371786 GAGAGTTGACACACTTGATGACA 58.628 43.478 0.00 0.00 0.00 3.58
3197 3366 3.426859 CGAGAGTTGACACACTTGATGAC 59.573 47.826 0.00 0.00 28.64 3.06
3198 3367 3.068165 ACGAGAGTTGACACACTTGATGA 59.932 43.478 0.00 0.00 46.40 2.92
3199 3368 3.384668 ACGAGAGTTGACACACTTGATG 58.615 45.455 0.00 0.00 46.40 3.07
3218 3387 7.497909 AGTGGAATATACAGGGAACAATTAACG 59.502 37.037 0.00 0.00 0.00 3.18
3237 3413 8.477419 TTTAATTTCTTGGAGAACAGTGGAAT 57.523 30.769 0.00 0.00 33.26 3.01
3268 3444 4.318760 CGATAAACTTATCCCACATGTGCG 60.319 45.833 20.81 12.52 36.95 5.34
3269 3445 4.574828 ACGATAAACTTATCCCACATGTGC 59.425 41.667 20.81 0.90 36.95 4.57
3278 3454 7.652105 TGCAGATGTTCTACGATAAACTTATCC 59.348 37.037 4.30 0.00 36.95 2.59
3291 3467 8.213518 TGGAAAGAAATATGCAGATGTTCTAC 57.786 34.615 14.73 12.48 0.00 2.59
3339 3516 7.646922 GCATTCATCACCATTGATTCTAAAGAC 59.353 37.037 0.00 0.00 40.79 3.01
3377 3554 4.787551 TGGAACTGTTGAAAAGCTCCTAA 58.212 39.130 6.39 0.00 32.18 2.69
3430 3607 5.654650 GTCTCCTTCACCAAAGAGAGATAGA 59.345 44.000 0.00 0.00 40.40 1.98
3432 3609 5.420421 CAGTCTCCTTCACCAAAGAGAGATA 59.580 44.000 0.00 0.00 40.40 1.98
3450 3808 6.701841 TCACACTGAAAGACATTTACAGTCTC 59.298 38.462 0.00 0.00 45.11 3.36
3462 3820 3.253432 GGAAACCCATCACACTGAAAGAC 59.747 47.826 0.00 0.00 37.43 3.01
3467 3825 2.108075 ACATGGAAACCCATCACACTGA 59.892 45.455 0.00 0.00 42.34 3.41
3479 3837 2.287547 ACATGAACGCACACATGGAAAC 60.288 45.455 0.00 0.00 45.31 2.78
3507 3866 4.038042 CCAGCGTATCCAGACAAAGAGATA 59.962 45.833 0.00 0.00 0.00 1.98
3510 3869 2.093973 ACCAGCGTATCCAGACAAAGAG 60.094 50.000 0.00 0.00 0.00 2.85
3526 3885 3.428534 CGCATGGAAAAGTTTTTACCAGC 59.571 43.478 12.73 13.52 33.82 4.85
3527 3886 3.428534 GCGCATGGAAAAGTTTTTACCAG 59.571 43.478 0.30 7.56 33.82 4.00
3532 3891 2.908688 AGGCGCATGGAAAAGTTTTT 57.091 40.000 10.83 0.00 0.00 1.94
3668 4028 0.730840 GGTCTTCGCGTAAAATGGGG 59.269 55.000 5.77 0.00 0.00 4.96
3772 4134 9.520515 AACATCTCAAAACTATGTATCCTTGTT 57.479 29.630 0.00 0.00 33.59 2.83
3819 4181 9.307121 CAAGACACCATGAGAGTATAAACTAAG 57.693 37.037 0.00 0.00 35.56 2.18
3832 4200 3.261897 AGAGGTAACCAAGACACCATGAG 59.738 47.826 0.00 0.00 34.62 2.90
3839 4207 6.126997 TGACTGTAAAAGAGGTAACCAAGACA 60.127 38.462 0.00 0.00 37.17 3.41
3844 4212 5.617528 TGTGACTGTAAAAGAGGTAACCA 57.382 39.130 0.00 0.00 37.17 3.67
3845 4213 6.930667 TTTGTGACTGTAAAAGAGGTAACC 57.069 37.500 0.00 0.00 37.17 2.85
3890 4258 7.504926 TGGTTACCACAGTTATTCCTCTAAT 57.495 36.000 0.00 0.00 0.00 1.73
3900 4268 8.104566 AGCAAATAGTAATGGTTACCACAGTTA 58.895 33.333 6.10 0.00 35.80 2.24
3905 4273 7.012044 CCTGTAGCAAATAGTAATGGTTACCAC 59.988 40.741 6.10 0.00 35.80 4.16
3907 4275 6.485648 CCCTGTAGCAAATAGTAATGGTTACC 59.514 42.308 0.00 0.00 36.81 2.85
3917 4285 3.393687 TCATCCCCCTGTAGCAAATAGT 58.606 45.455 0.00 0.00 0.00 2.12
3920 4288 3.979501 AATCATCCCCCTGTAGCAAAT 57.020 42.857 0.00 0.00 0.00 2.32
4044 4412 2.223180 GCGAGAAAAGTGGTTGTCGTTT 60.223 45.455 6.38 0.00 43.88 3.60
4080 4448 2.689553 AACAAAAGGGCAAACAGGTG 57.310 45.000 0.00 0.00 0.00 4.00
4081 4449 2.432874 GGTAACAAAAGGGCAAACAGGT 59.567 45.455 0.00 0.00 0.00 4.00
4100 4468 1.219773 ATGCCATGGATGACAGAGGT 58.780 50.000 18.40 0.00 32.42 3.85
4103 4471 2.812836 ACAATGCCATGGATGACAGA 57.187 45.000 18.40 0.00 0.00 3.41
4104 4472 3.548770 ACTACAATGCCATGGATGACAG 58.451 45.455 18.40 14.43 0.00 3.51
4188 4558 9.819267 AACCTTACATGCTTAAATCTAGTAGAC 57.181 33.333 0.85 0.00 0.00 2.59
4198 4568 4.582656 AGTGTGCAACCTTACATGCTTAAA 59.417 37.500 0.00 0.00 42.97 1.52
4215 4585 1.438651 TAGATGTTGCGGAAGTGTGC 58.561 50.000 0.00 0.00 0.00 4.57
4220 4590 4.442706 ACCTTACATAGATGTTGCGGAAG 58.557 43.478 0.00 0.00 41.97 3.46
4223 4593 5.815740 AGTAAACCTTACATAGATGTTGCGG 59.184 40.000 0.00 2.40 41.97 5.69
4224 4594 6.903883 AGTAAACCTTACATAGATGTTGCG 57.096 37.500 0.00 0.00 41.97 4.85
4248 4618 6.585695 TTACGTAGATGTCCTTTCTGAAGT 57.414 37.500 0.00 0.00 0.00 3.01
4249 4619 7.036220 ACATTACGTAGATGTCCTTTCTGAAG 58.964 38.462 13.95 0.00 32.48 3.02
4250 4620 6.931838 ACATTACGTAGATGTCCTTTCTGAA 58.068 36.000 13.95 0.00 32.48 3.02
4251 4621 6.525578 ACATTACGTAGATGTCCTTTCTGA 57.474 37.500 13.95 0.00 32.48 3.27
4252 4622 6.036083 CCAACATTACGTAGATGTCCTTTCTG 59.964 42.308 17.71 12.99 36.76 3.02
4254 4624 5.873164 ACCAACATTACGTAGATGTCCTTTC 59.127 40.000 17.71 0.00 36.76 2.62
4255 4625 5.642063 CACCAACATTACGTAGATGTCCTTT 59.358 40.000 17.71 5.82 36.76 3.11
4267 4640 9.169468 GAGCAATAATAAATCACCAACATTACG 57.831 33.333 0.00 0.00 0.00 3.18
4288 4661 4.284490 AGTGGAGTTGATACAGAAGAGCAA 59.716 41.667 0.00 0.00 0.00 3.91
4293 4666 5.184864 ACTCTCAGTGGAGTTGATACAGAAG 59.815 44.000 8.07 0.00 43.14 2.85
4348 4723 5.726980 AAAAATATTGCTGCTCCAACTCA 57.273 34.783 0.00 0.00 0.00 3.41
4367 4742 3.548268 CGTCGCTAAAAGTTTGGCAAAAA 59.452 39.130 15.29 0.00 43.79 1.94
4379 4785 2.157834 TCTTTCAGCCGTCGCTAAAA 57.842 45.000 0.00 0.00 46.25 1.52
4384 4790 0.796312 TTGAATCTTTCAGCCGTCGC 59.204 50.000 0.00 0.00 41.38 5.19
4385 4791 3.747099 ATTTGAATCTTTCAGCCGTCG 57.253 42.857 0.00 0.00 41.38 5.12
4412 4818 4.586306 TCCCTACTCCAAAAATCCTTCC 57.414 45.455 0.00 0.00 0.00 3.46
4413 4819 6.427441 AGAATCCCTACTCCAAAAATCCTTC 58.573 40.000 0.00 0.00 0.00 3.46
4416 4822 6.427441 AGAAGAATCCCTACTCCAAAAATCC 58.573 40.000 0.00 0.00 0.00 3.01
4432 4890 4.906618 TCAAACACCCACCTAGAAGAATC 58.093 43.478 0.00 0.00 0.00 2.52
4439 4897 2.890311 TGCAAATCAAACACCCACCTAG 59.110 45.455 0.00 0.00 0.00 3.02
4447 4905 1.336755 ACGGTCCTGCAAATCAAACAC 59.663 47.619 0.00 0.00 0.00 3.32
4459 4917 5.713792 AGTCTTATCATATCACGGTCCTG 57.286 43.478 0.00 0.00 0.00 3.86
4463 4921 7.451877 ACCTGAATAGTCTTATCATATCACGGT 59.548 37.037 0.00 0.00 0.00 4.83
4464 4922 7.757173 CACCTGAATAGTCTTATCATATCACGG 59.243 40.741 0.00 0.00 0.00 4.94
4467 4925 8.727100 ACCACCTGAATAGTCTTATCATATCA 57.273 34.615 0.00 0.00 0.00 2.15
4472 4930 7.496346 AGAAACCACCTGAATAGTCTTATCA 57.504 36.000 0.00 0.00 0.00 2.15
4473 4931 8.669243 CAAAGAAACCACCTGAATAGTCTTATC 58.331 37.037 0.00 0.00 0.00 1.75
4474 4932 8.164070 ACAAAGAAACCACCTGAATAGTCTTAT 58.836 33.333 0.00 0.00 0.00 1.73
4475 4933 7.444183 CACAAAGAAACCACCTGAATAGTCTTA 59.556 37.037 0.00 0.00 0.00 2.10
4477 4935 5.765182 CACAAAGAAACCACCTGAATAGTCT 59.235 40.000 0.00 0.00 0.00 3.24
4478 4936 5.562890 GCACAAAGAAACCACCTGAATAGTC 60.563 44.000 0.00 0.00 0.00 2.59
4479 4937 4.278419 GCACAAAGAAACCACCTGAATAGT 59.722 41.667 0.00 0.00 0.00 2.12
4480 4938 4.520492 AGCACAAAGAAACCACCTGAATAG 59.480 41.667 0.00 0.00 0.00 1.73
4481 4939 4.469657 AGCACAAAGAAACCACCTGAATA 58.530 39.130 0.00 0.00 0.00 1.75
4482 4940 3.299503 AGCACAAAGAAACCACCTGAAT 58.700 40.909 0.00 0.00 0.00 2.57
4488 4948 4.632538 ACAGTTAGCACAAAGAAACCAC 57.367 40.909 0.00 0.00 0.00 4.16
4491 4951 6.077838 CGGAATACAGTTAGCACAAAGAAAC 58.922 40.000 0.00 0.00 0.00 2.78
4499 4959 6.956299 TTTTCTACGGAATACAGTTAGCAC 57.044 37.500 0.00 0.00 0.00 4.40
4508 4968 7.913821 GGTCAATGGAAATTTTCTACGGAATAC 59.086 37.037 8.93 0.00 0.00 1.89
4513 4973 5.897377 AGGTCAATGGAAATTTTCTACGG 57.103 39.130 8.93 0.06 0.00 4.02
4515 4975 6.808704 GCTCAAGGTCAATGGAAATTTTCTAC 59.191 38.462 8.93 1.36 0.00 2.59
4529 4989 5.808366 TCTTTAGAAGAGCTCAAGGTCAA 57.192 39.130 17.77 0.43 44.42 3.18
4560 5083 8.804688 ATGTCTTGCTATCTTAATTACGAGAC 57.195 34.615 10.10 10.10 0.00 3.36
4591 5114 5.066893 CCATGTGAGTGGAGAAAATGTATGG 59.933 44.000 0.00 0.00 42.02 2.74
4650 5181 1.619654 TTGTTCCGGGAGTACTCGAA 58.380 50.000 16.56 11.50 43.41 3.71
4651 5182 1.619654 TTTGTTCCGGGAGTACTCGA 58.380 50.000 16.56 5.86 43.41 4.04
4652 5183 2.268298 CATTTGTTCCGGGAGTACTCG 58.732 52.381 16.56 6.89 40.02 4.18
4655 5210 3.610821 GCAAACATTTGTTCCGGGAGTAC 60.611 47.826 0.00 0.00 40.24 2.73
4663 5218 7.492994 TGGTAAAACTTAGCAAACATTTGTTCC 59.507 33.333 6.24 0.00 40.24 3.62
4664 5219 8.413899 TGGTAAAACTTAGCAAACATTTGTTC 57.586 30.769 6.24 0.00 40.24 3.18
4666 5221 8.779354 TTTGGTAAAACTTAGCAAACATTTGT 57.221 26.923 15.94 0.00 39.18 2.83
4667 5222 9.862585 GATTTGGTAAAACTTAGCAAACATTTG 57.137 29.630 20.08 0.00 44.30 2.32
4750 5306 1.893544 TTGTCGTTTTCCCCGCAATA 58.106 45.000 0.00 0.00 0.00 1.90
4765 5321 7.830739 AGGTTGGACATAATTCTTTCATTGTC 58.169 34.615 0.00 0.00 34.24 3.18
4800 5356 8.915057 AATGTGATCATGTTAATTAGAGGGAG 57.085 34.615 0.00 0.00 34.19 4.30
4899 5455 6.348621 ACAAAATTTGTTCTGTGTTCATGC 57.651 33.333 5.41 0.00 42.22 4.06
4913 5469 7.628235 TGTGCATGTGTGATAAACAAAATTTG 58.372 30.769 3.89 3.89 41.57 2.32
4915 5471 6.424509 CCTGTGCATGTGTGATAAACAAAATT 59.575 34.615 0.00 0.00 41.57 1.82
4921 5477 2.164219 CCCCTGTGCATGTGTGATAAAC 59.836 50.000 0.00 0.00 0.00 2.01
4925 5481 0.322816 GACCCCTGTGCATGTGTGAT 60.323 55.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.