Multiple sequence alignment - TraesCS6D01G042600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G042600 chr6D 100.000 3898 0 0 1 3898 17471505 17467608 0.000000e+00 7199.0
1 TraesCS6D01G042600 chr6D 92.956 2172 123 12 976 3123 17791505 17793670 0.000000e+00 3136.0
2 TraesCS6D01G042600 chr6D 83.678 870 107 10 1280 2146 17449072 17448235 0.000000e+00 787.0
3 TraesCS6D01G042600 chr6D 90.945 254 21 2 299 551 428995255 428995003 1.340000e-89 340.0
4 TraesCS6D01G042600 chr6D 91.358 243 21 0 299 541 130792685 130792927 2.240000e-87 333.0
5 TraesCS6D01G042600 chr6D 87.031 293 35 3 969 1261 17449245 17448956 1.040000e-85 327.0
6 TraesCS6D01G042600 chr6D 86.070 201 28 0 2134 2334 17447039 17446839 2.360000e-52 217.0
7 TraesCS6D01G042600 chr6D 89.474 114 7 4 596 704 17791187 17791300 5.250000e-29 139.0
8 TraesCS6D01G042600 chr6D 77.381 168 32 4 1421 1585 3823345 3823181 1.150000e-15 95.3
9 TraesCS6D01G042600 chr6A 92.207 2374 133 26 783 3123 18356237 18353883 0.000000e+00 3312.0
10 TraesCS6D01G042600 chr6A 95.250 779 33 2 3123 3898 18350385 18349608 0.000000e+00 1230.0
11 TraesCS6D01G042600 chr6B 90.840 1987 122 24 783 2731 30405662 30403698 0.000000e+00 2606.0
12 TraesCS6D01G042600 chr6B 87.254 2236 212 40 919 3123 30597135 30594942 0.000000e+00 2483.0
13 TraesCS6D01G042600 chr6B 86.160 2370 237 50 783 3123 31261820 31259513 0.000000e+00 2475.0
14 TraesCS6D01G042600 chr6B 86.293 1160 125 22 1981 3123 30556792 30555650 0.000000e+00 1230.0
15 TraesCS6D01G042600 chr6B 84.965 1011 119 15 1254 2255 30557852 30556866 0.000000e+00 994.0
16 TraesCS6D01G042600 chr6B 86.811 417 38 11 2723 3123 30403558 30403143 2.140000e-122 449.0
17 TraesCS6D01G042600 chr6B 94.690 226 11 1 919 1144 30558585 30558361 2.230000e-92 350.0
18 TraesCS6D01G042600 chr6B 86.822 129 6 5 559 683 30597467 30597346 2.440000e-27 134.0
19 TraesCS6D01G042600 chr1A 91.046 1798 132 8 944 2728 9762000 9763781 0.000000e+00 2401.0
20 TraesCS6D01G042600 chr1A 93.137 306 20 1 1 306 475631516 475631212 7.680000e-122 448.0
21 TraesCS6D01G042600 chr1A 85.401 411 46 8 2723 3123 9763925 9764331 7.790000e-112 414.0
22 TraesCS6D01G042600 chr2A 94.719 303 15 1 1 302 762826345 762826043 1.640000e-128 470.0
23 TraesCS6D01G042600 chr2A 94.595 296 16 0 1 296 424920832 424921127 3.550000e-125 459.0
24 TraesCS6D01G042600 chr2A 93.645 299 18 1 1 299 81119214 81118917 2.760000e-121 446.0
25 TraesCS6D01G042600 chr2A 91.358 243 21 0 299 541 21224453 21224211 2.240000e-87 333.0
26 TraesCS6D01G042600 chr1B 95.172 290 14 0 1 290 10721797 10722086 3.550000e-125 459.0
27 TraesCS6D01G042600 chr3A 94.000 300 18 0 1 300 43483676 43483975 4.590000e-124 455.0
28 TraesCS6D01G042600 chr3A 93.333 300 20 0 1 300 44067953 44068252 9.940000e-121 444.0
29 TraesCS6D01G042600 chr7A 93.645 299 19 0 1 299 28359510 28359212 7.680000e-122 448.0
30 TraesCS6D01G042600 chr7A 91.770 243 20 0 303 545 30874597 30874839 4.820000e-89 339.0
31 TraesCS6D01G042600 chr2B 93.919 296 18 0 1 296 744409631 744409926 7.680000e-122 448.0
32 TraesCS6D01G042600 chr2B 91.770 243 20 0 299 541 678690939 678691181 4.820000e-89 339.0
33 TraesCS6D01G042600 chr5D 93.361 241 16 0 303 543 543585126 543585366 1.330000e-94 357.0
34 TraesCS6D01G042600 chr5D 82.388 335 38 15 3124 3448 542476616 542476293 4.960000e-69 272.0
35 TraesCS6D01G042600 chr4A 91.903 247 19 1 299 545 620561631 620561876 1.040000e-90 344.0
36 TraesCS6D01G042600 chr4A 77.869 122 24 2 2855 2974 602374061 602374181 5.400000e-09 73.1
37 TraesCS6D01G042600 chr4A 74.834 151 35 2 2855 3003 602381584 602381733 9.040000e-07 65.8
38 TraesCS6D01G042600 chr1D 91.358 243 21 0 299 541 98735403 98735645 2.240000e-87 333.0
39 TraesCS6D01G042600 chr7D 90.763 249 19 2 299 546 561510865 561511110 2.900000e-86 329.0
40 TraesCS6D01G042600 chr3D 82.090 335 39 13 3124 3448 498112010 498111687 2.310000e-67 267.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G042600 chr6D 17467608 17471505 3897 True 7199.000000 7199 100.000000 1 3898 1 chr6D.!!$R2 3897
1 TraesCS6D01G042600 chr6D 17791187 17793670 2483 False 1637.500000 3136 91.215000 596 3123 2 chr6D.!!$F2 2527
2 TraesCS6D01G042600 chr6D 17446839 17449245 2406 True 443.666667 787 85.593000 969 2334 3 chr6D.!!$R4 1365
3 TraesCS6D01G042600 chr6A 18349608 18356237 6629 True 2271.000000 3312 93.728500 783 3898 2 chr6A.!!$R1 3115
4 TraesCS6D01G042600 chr6B 31259513 31261820 2307 True 2475.000000 2475 86.160000 783 3123 1 chr6B.!!$R1 2340
5 TraesCS6D01G042600 chr6B 30403143 30405662 2519 True 1527.500000 2606 88.825500 783 3123 2 chr6B.!!$R2 2340
6 TraesCS6D01G042600 chr6B 30594942 30597467 2525 True 1308.500000 2483 87.038000 559 3123 2 chr6B.!!$R4 2564
7 TraesCS6D01G042600 chr6B 30555650 30558585 2935 True 858.000000 1230 88.649333 919 3123 3 chr6B.!!$R3 2204
8 TraesCS6D01G042600 chr1A 9762000 9764331 2331 False 1407.500000 2401 88.223500 944 3123 2 chr1A.!!$F1 2179

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
309 310 0.034477 CTTGTAATGGTTCCCCGGCT 60.034 55.0 0.00 0.00 0.00 5.52 F
433 434 0.034863 TTTAGAGGGCGGGCGAAAAT 60.035 50.0 0.00 0.00 0.00 1.82 F
435 436 0.034863 TAGAGGGCGGGCGAAAATTT 60.035 50.0 0.00 0.00 0.00 1.82 F
498 499 0.037590 TCTCGTGGGAATGGGTTTGG 59.962 55.0 0.00 0.00 0.00 3.28 F
509 510 0.107459 TGGGTTTGGGCAAGCAAAAC 60.107 50.0 11.77 11.77 34.23 2.43 F
513 514 0.179936 TTTGGGCAAGCAAAACCTGG 59.820 50.0 0.00 0.00 0.00 4.45 F
1612 2088 0.249120 TGACGATCAAGACGGGCATT 59.751 50.0 0.00 0.00 34.93 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 2067 1.248101 TGCCCGTCTTGATCGTCAGA 61.248 55.000 0.00 0.00 0.00 3.27 R
1962 2446 1.432514 CCTCCGACATATGAATGCCG 58.567 55.000 10.38 4.74 38.55 5.69 R
1976 2460 2.505407 TCCCATATATGAATGCCCTCCG 59.495 50.000 14.54 0.00 0.00 4.63 R
2069 2571 3.005050 TGCATTTCTGAAGGTGCAAGAAG 59.995 43.478 22.09 0.00 43.83 2.85 R
2077 2579 3.009916 ACCATCTCTGCATTTCTGAAGGT 59.990 43.478 0.00 0.00 0.00 3.50 R
2432 4514 5.734220 GCAAGCAGACAGATTGAGTGAAAAA 60.734 40.000 0.00 0.00 46.32 1.94 R
3508 9438 1.067060 GGCAGAAACCACACCAAACTC 59.933 52.381 0.00 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.864418 TTGCCACGGATAGTTACTCTATT 57.136 39.130 0.00 0.00 39.22 1.73
23 24 5.196341 TGCCACGGATAGTTACTCTATTG 57.804 43.478 0.00 0.00 39.22 1.90
24 25 4.891168 TGCCACGGATAGTTACTCTATTGA 59.109 41.667 0.00 0.00 39.22 2.57
25 26 5.361571 TGCCACGGATAGTTACTCTATTGAA 59.638 40.000 0.00 0.00 39.22 2.69
26 27 6.127281 TGCCACGGATAGTTACTCTATTGAAA 60.127 38.462 0.00 0.00 39.22 2.69
27 28 6.929606 GCCACGGATAGTTACTCTATTGAAAT 59.070 38.462 0.00 0.00 39.22 2.17
28 29 8.086522 GCCACGGATAGTTACTCTATTGAAATA 58.913 37.037 0.00 0.00 39.22 1.40
29 30 9.408069 CCACGGATAGTTACTCTATTGAAATAC 57.592 37.037 0.00 0.00 39.22 1.89
30 31 9.408069 CACGGATAGTTACTCTATTGAAATACC 57.592 37.037 0.00 0.00 39.22 2.73
31 32 9.364653 ACGGATAGTTACTCTATTGAAATACCT 57.635 33.333 0.00 0.00 39.22 3.08
54 55 9.654663 ACCTAGTCTCTATTACAACAAAATGAC 57.345 33.333 0.00 0.00 0.00 3.06
55 56 9.877178 CCTAGTCTCTATTACAACAAAATGACT 57.123 33.333 0.00 0.00 35.59 3.41
57 58 8.034058 AGTCTCTATTACAACAAAATGACTGC 57.966 34.615 0.00 0.00 31.09 4.40
58 59 7.119846 AGTCTCTATTACAACAAAATGACTGCC 59.880 37.037 0.00 0.00 31.09 4.85
59 60 6.374333 TCTCTATTACAACAAAATGACTGCCC 59.626 38.462 0.00 0.00 0.00 5.36
60 61 6.245408 TCTATTACAACAAAATGACTGCCCT 58.755 36.000 0.00 0.00 0.00 5.19
61 62 4.846779 TTACAACAAAATGACTGCCCTC 57.153 40.909 0.00 0.00 0.00 4.30
62 63 2.665165 ACAACAAAATGACTGCCCTCA 58.335 42.857 0.00 0.00 0.00 3.86
63 64 3.233507 ACAACAAAATGACTGCCCTCAT 58.766 40.909 0.00 0.00 31.84 2.90
64 65 3.006110 ACAACAAAATGACTGCCCTCATG 59.994 43.478 0.00 0.00 30.92 3.07
65 66 1.547372 ACAAAATGACTGCCCTCATGC 59.453 47.619 0.00 0.00 30.92 4.06
66 67 1.546923 CAAAATGACTGCCCTCATGCA 59.453 47.619 0.00 0.00 39.37 3.96
67 68 1.927487 AAATGACTGCCCTCATGCAA 58.073 45.000 0.00 0.00 41.51 4.08
68 69 1.180029 AATGACTGCCCTCATGCAAC 58.820 50.000 0.00 0.00 41.51 4.17
69 70 0.038599 ATGACTGCCCTCATGCAACA 59.961 50.000 0.00 0.00 41.51 3.33
70 71 0.607217 TGACTGCCCTCATGCAACAG 60.607 55.000 0.00 0.00 41.51 3.16
71 72 0.321919 GACTGCCCTCATGCAACAGA 60.322 55.000 10.53 0.00 41.51 3.41
72 73 0.111061 ACTGCCCTCATGCAACAGAA 59.889 50.000 10.53 0.00 41.51 3.02
73 74 1.272313 ACTGCCCTCATGCAACAGAAT 60.272 47.619 10.53 0.00 41.51 2.40
74 75 1.404391 CTGCCCTCATGCAACAGAATC 59.596 52.381 0.00 0.00 41.51 2.52
75 76 1.005097 TGCCCTCATGCAACAGAATCT 59.995 47.619 0.00 0.00 38.56 2.40
76 77 1.404391 GCCCTCATGCAACAGAATCTG 59.596 52.381 8.98 8.98 37.52 2.90
89 90 5.283060 ACAGAATCTGTTTGTCGCAATAC 57.717 39.130 10.56 0.00 42.59 1.89
90 91 4.997395 ACAGAATCTGTTTGTCGCAATACT 59.003 37.500 10.56 0.00 42.59 2.12
91 92 5.106948 ACAGAATCTGTTTGTCGCAATACTG 60.107 40.000 10.56 0.00 42.59 2.74
92 93 3.747099 ATCTGTTTGTCGCAATACTGC 57.253 42.857 0.00 0.00 45.75 4.40
104 105 3.994204 CAATACTGCTGCCATATTGCA 57.006 42.857 15.64 1.01 39.37 4.08
110 111 3.585020 TGCCATATTGCAGCGCCG 61.585 61.111 2.29 0.00 36.04 6.46
111 112 3.279116 GCCATATTGCAGCGCCGA 61.279 61.111 2.29 0.00 0.00 5.54
112 113 2.620112 GCCATATTGCAGCGCCGAT 61.620 57.895 2.29 0.00 0.00 4.18
113 114 1.298157 GCCATATTGCAGCGCCGATA 61.298 55.000 2.29 0.00 0.00 2.92
114 115 0.443869 CCATATTGCAGCGCCGATAC 59.556 55.000 2.29 0.00 0.00 2.24
115 116 1.147473 CATATTGCAGCGCCGATACA 58.853 50.000 2.29 0.00 0.00 2.29
116 117 1.127397 CATATTGCAGCGCCGATACAG 59.873 52.381 2.29 0.00 0.00 2.74
117 118 0.104120 TATTGCAGCGCCGATACAGT 59.896 50.000 2.29 0.00 0.00 3.55
118 119 0.744414 ATTGCAGCGCCGATACAGTT 60.744 50.000 2.29 0.00 0.00 3.16
119 120 0.953471 TTGCAGCGCCGATACAGTTT 60.953 50.000 2.29 0.00 0.00 2.66
120 121 1.060937 GCAGCGCCGATACAGTTTG 59.939 57.895 2.29 0.00 0.00 2.93
121 122 1.635663 GCAGCGCCGATACAGTTTGT 61.636 55.000 2.29 0.00 0.00 2.83
122 123 0.796312 CAGCGCCGATACAGTTTGTT 59.204 50.000 2.29 0.00 0.00 2.83
123 124 0.796312 AGCGCCGATACAGTTTGTTG 59.204 50.000 2.29 0.00 0.00 3.33
124 125 0.793104 GCGCCGATACAGTTTGTTGC 60.793 55.000 0.00 0.00 0.00 4.17
125 126 0.515127 CGCCGATACAGTTTGTTGCA 59.485 50.000 0.00 0.00 0.00 4.08
126 127 1.069568 CGCCGATACAGTTTGTTGCAA 60.070 47.619 0.00 0.00 0.00 4.08
127 128 2.414029 CGCCGATACAGTTTGTTGCAAT 60.414 45.455 0.59 0.00 0.00 3.56
128 129 3.181515 CGCCGATACAGTTTGTTGCAATA 60.182 43.478 0.59 0.00 0.00 1.90
129 130 4.495679 CGCCGATACAGTTTGTTGCAATAT 60.496 41.667 0.59 0.00 0.00 1.28
130 131 4.734854 GCCGATACAGTTTGTTGCAATATG 59.265 41.667 0.59 0.00 0.00 1.78
131 132 5.448496 GCCGATACAGTTTGTTGCAATATGA 60.448 40.000 0.59 0.00 0.00 2.15
132 133 6.194463 CCGATACAGTTTGTTGCAATATGAG 58.806 40.000 0.59 0.00 0.00 2.90
133 134 6.194463 CGATACAGTTTGTTGCAATATGAGG 58.806 40.000 0.59 0.00 0.00 3.86
134 135 4.178545 ACAGTTTGTTGCAATATGAGGC 57.821 40.909 0.59 0.00 0.00 4.70
135 136 3.056607 ACAGTTTGTTGCAATATGAGGCC 60.057 43.478 0.59 0.00 0.00 5.19
136 137 3.194116 CAGTTTGTTGCAATATGAGGCCT 59.806 43.478 3.86 3.86 0.00 5.19
137 138 3.445096 AGTTTGTTGCAATATGAGGCCTC 59.555 43.478 26.78 26.78 0.00 4.70
138 139 3.370840 TTGTTGCAATATGAGGCCTCT 57.629 42.857 32.28 20.00 0.00 3.69
139 140 4.502105 TTGTTGCAATATGAGGCCTCTA 57.498 40.909 32.28 21.40 0.00 2.43
140 141 4.712051 TGTTGCAATATGAGGCCTCTAT 57.288 40.909 32.28 24.14 0.00 1.98
141 142 5.052693 TGTTGCAATATGAGGCCTCTATT 57.947 39.130 32.28 26.09 0.00 1.73
142 143 4.823442 TGTTGCAATATGAGGCCTCTATTG 59.177 41.667 33.56 33.56 35.82 1.90
143 144 3.415212 TGCAATATGAGGCCTCTATTGC 58.585 45.455 41.11 41.11 44.85 3.56
144 145 3.415212 GCAATATGAGGCCTCTATTGCA 58.585 45.455 41.69 27.05 44.52 4.08
145 146 3.822735 GCAATATGAGGCCTCTATTGCAA 59.177 43.478 41.69 26.13 44.52 4.08
146 147 4.320788 GCAATATGAGGCCTCTATTGCAAC 60.321 45.833 41.69 29.68 44.52 4.17
147 148 4.712051 ATATGAGGCCTCTATTGCAACA 57.288 40.909 32.28 10.92 0.00 3.33
148 149 2.877097 TGAGGCCTCTATTGCAACAA 57.123 45.000 32.28 6.14 0.00 2.83
149 150 3.153369 TGAGGCCTCTATTGCAACAAA 57.847 42.857 32.28 5.57 0.00 2.83
150 151 3.084039 TGAGGCCTCTATTGCAACAAAG 58.916 45.455 32.28 0.00 0.00 2.77
151 152 3.084786 GAGGCCTCTATTGCAACAAAGT 58.915 45.455 26.25 0.00 0.00 2.66
152 153 3.500343 AGGCCTCTATTGCAACAAAGTT 58.500 40.909 0.00 0.00 0.00 2.66
153 154 4.662278 AGGCCTCTATTGCAACAAAGTTA 58.338 39.130 0.00 0.00 0.00 2.24
154 155 5.264395 AGGCCTCTATTGCAACAAAGTTAT 58.736 37.500 0.00 0.00 0.00 1.89
155 156 5.716703 AGGCCTCTATTGCAACAAAGTTATT 59.283 36.000 0.00 0.00 0.00 1.40
156 157 6.889722 AGGCCTCTATTGCAACAAAGTTATTA 59.110 34.615 0.00 0.00 0.00 0.98
157 158 7.561356 AGGCCTCTATTGCAACAAAGTTATTAT 59.439 33.333 0.00 0.00 0.00 1.28
158 159 8.197439 GGCCTCTATTGCAACAAAGTTATTATT 58.803 33.333 0.00 0.00 0.00 1.40
159 160 9.586435 GCCTCTATTGCAACAAAGTTATTATTT 57.414 29.630 0.00 0.00 0.00 1.40
167 168 9.549509 TGCAACAAAGTTATTATTTATCGTGAC 57.450 29.630 0.00 0.00 0.00 3.67
168 169 9.006215 GCAACAAAGTTATTATTTATCGTGACC 57.994 33.333 0.00 0.00 0.00 4.02
203 204 4.663636 GCAATATGTGCGACCTATTACC 57.336 45.455 0.00 0.00 45.10 2.85
204 205 4.062293 GCAATATGTGCGACCTATTACCA 58.938 43.478 0.00 0.00 45.10 3.25
205 206 4.084013 GCAATATGTGCGACCTATTACCAC 60.084 45.833 0.00 0.00 45.10 4.16
206 207 4.948341 ATATGTGCGACCTATTACCACA 57.052 40.909 0.00 0.00 40.26 4.17
207 208 3.620427 ATGTGCGACCTATTACCACAA 57.380 42.857 0.00 0.00 39.52 3.33
208 209 2.690786 TGTGCGACCTATTACCACAAC 58.309 47.619 0.00 0.00 33.90 3.32
209 210 1.657094 GTGCGACCTATTACCACAACG 59.343 52.381 0.00 0.00 0.00 4.10
210 211 1.545136 TGCGACCTATTACCACAACGA 59.455 47.619 0.00 0.00 0.00 3.85
211 212 2.190981 GCGACCTATTACCACAACGAG 58.809 52.381 0.00 0.00 0.00 4.18
212 213 2.159338 GCGACCTATTACCACAACGAGA 60.159 50.000 0.00 0.00 0.00 4.04
213 214 3.692576 CGACCTATTACCACAACGAGAG 58.307 50.000 0.00 0.00 0.00 3.20
214 215 3.376234 CGACCTATTACCACAACGAGAGA 59.624 47.826 0.00 0.00 0.00 3.10
215 216 4.142534 CGACCTATTACCACAACGAGAGAA 60.143 45.833 0.00 0.00 0.00 2.87
216 217 5.450137 CGACCTATTACCACAACGAGAGAAT 60.450 44.000 0.00 0.00 0.00 2.40
217 218 6.295719 ACCTATTACCACAACGAGAGAATT 57.704 37.500 0.00 0.00 0.00 2.17
218 219 6.708285 ACCTATTACCACAACGAGAGAATTT 58.292 36.000 0.00 0.00 0.00 1.82
219 220 6.594159 ACCTATTACCACAACGAGAGAATTTG 59.406 38.462 0.00 0.00 0.00 2.32
220 221 6.594159 CCTATTACCACAACGAGAGAATTTGT 59.406 38.462 0.00 0.00 33.69 2.83
221 222 5.666969 TTACCACAACGAGAGAATTTGTG 57.333 39.130 6.69 6.69 46.39 3.33
225 226 5.666969 CACAACGAGAGAATTTGTGGTAA 57.333 39.130 5.90 0.00 44.18 2.85
226 227 6.241207 CACAACGAGAGAATTTGTGGTAAT 57.759 37.500 5.90 0.00 44.18 1.89
227 228 7.359262 CACAACGAGAGAATTTGTGGTAATA 57.641 36.000 5.90 0.00 44.18 0.98
228 229 7.974675 CACAACGAGAGAATTTGTGGTAATAT 58.025 34.615 5.90 0.00 44.18 1.28
229 230 8.450964 CACAACGAGAGAATTTGTGGTAATATT 58.549 33.333 5.90 0.00 44.18 1.28
230 231 8.450964 ACAACGAGAGAATTTGTGGTAATATTG 58.549 33.333 0.00 0.00 32.21 1.90
231 232 7.016361 ACGAGAGAATTTGTGGTAATATTGC 57.984 36.000 0.00 0.00 0.00 3.56
232 233 6.129393 CGAGAGAATTTGTGGTAATATTGCG 58.871 40.000 0.00 0.00 0.00 4.85
233 234 6.238103 CGAGAGAATTTGTGGTAATATTGCGT 60.238 38.462 0.00 0.00 0.00 5.24
234 235 7.391148 AGAGAATTTGTGGTAATATTGCGTT 57.609 32.000 0.00 0.00 0.00 4.84
235 236 7.826690 AGAGAATTTGTGGTAATATTGCGTTT 58.173 30.769 0.00 0.00 0.00 3.60
236 237 8.303876 AGAGAATTTGTGGTAATATTGCGTTTT 58.696 29.630 0.00 0.00 0.00 2.43
237 238 9.562583 GAGAATTTGTGGTAATATTGCGTTTTA 57.437 29.630 0.00 0.00 0.00 1.52
241 242 7.513190 TTGTGGTAATATTGCGTTTTATTGC 57.487 32.000 0.00 0.00 0.00 3.56
242 243 6.621613 TGTGGTAATATTGCGTTTTATTGCA 58.378 32.000 0.00 0.00 39.81 4.08
250 251 5.530519 TTGCGTTTTATTGCAACAAAACA 57.469 30.435 33.33 19.66 45.45 2.83
251 252 5.725110 TGCGTTTTATTGCAACAAAACAT 57.275 30.435 33.33 8.95 42.22 2.71
252 253 6.828502 TGCGTTTTATTGCAACAAAACATA 57.171 29.167 33.33 23.11 42.22 2.29
253 254 6.871562 TGCGTTTTATTGCAACAAAACATAG 58.128 32.000 33.33 22.95 42.22 2.23
254 255 6.477033 TGCGTTTTATTGCAACAAAACATAGT 59.523 30.769 33.33 6.94 42.22 2.12
255 256 7.010552 TGCGTTTTATTGCAACAAAACATAGTT 59.989 29.630 33.33 6.46 42.22 2.24
256 257 7.317736 GCGTTTTATTGCAACAAAACATAGTTG 59.682 33.333 33.33 21.87 45.91 3.16
257 258 8.324567 CGTTTTATTGCAACAAAACATAGTTGT 58.675 29.630 33.33 5.88 45.16 3.32
260 261 8.514136 TTATTGCAACAAAACATAGTTGTAGC 57.486 30.769 0.00 0.00 45.16 3.58
261 262 5.506686 TGCAACAAAACATAGTTGTAGCA 57.493 34.783 7.08 0.00 45.16 3.49
262 263 5.895928 TGCAACAAAACATAGTTGTAGCAA 58.104 33.333 7.08 0.00 45.16 3.91
263 264 6.511416 TGCAACAAAACATAGTTGTAGCAAT 58.489 32.000 7.08 0.00 45.16 3.56
264 265 7.652727 TGCAACAAAACATAGTTGTAGCAATA 58.347 30.769 7.08 0.00 45.16 1.90
265 266 8.138074 TGCAACAAAACATAGTTGTAGCAATAA 58.862 29.630 7.08 0.00 45.16 1.40
266 267 8.973378 GCAACAAAACATAGTTGTAGCAATAAA 58.027 29.630 7.08 0.00 45.16 1.40
283 284 6.708676 GCAATAAATTTTGCTGCAATAGACC 58.291 36.000 16.77 0.00 46.66 3.85
284 285 6.508404 GCAATAAATTTTGCTGCAATAGACCG 60.508 38.462 16.77 2.80 46.66 4.79
285 286 3.508744 AATTTTGCTGCAATAGACCGG 57.491 42.857 16.77 0.00 0.00 5.28
286 287 2.192664 TTTTGCTGCAATAGACCGGA 57.807 45.000 16.77 0.00 0.00 5.14
287 288 2.192664 TTTGCTGCAATAGACCGGAA 57.807 45.000 16.77 0.00 0.00 4.30
288 289 2.418368 TTGCTGCAATAGACCGGAAT 57.582 45.000 9.46 0.00 0.00 3.01
289 290 1.953559 TGCTGCAATAGACCGGAATC 58.046 50.000 9.46 0.00 0.00 2.52
290 291 1.230324 GCTGCAATAGACCGGAATCC 58.770 55.000 9.46 0.00 0.00 3.01
291 292 1.202698 GCTGCAATAGACCGGAATCCT 60.203 52.381 9.46 1.71 0.00 3.24
292 293 2.746472 GCTGCAATAGACCGGAATCCTT 60.746 50.000 9.46 0.00 0.00 3.36
293 294 2.874701 CTGCAATAGACCGGAATCCTTG 59.125 50.000 9.46 6.31 0.00 3.61
294 295 2.238646 TGCAATAGACCGGAATCCTTGT 59.761 45.455 9.46 0.00 0.00 3.16
295 296 3.452990 TGCAATAGACCGGAATCCTTGTA 59.547 43.478 9.46 1.76 0.00 2.41
296 297 4.080807 TGCAATAGACCGGAATCCTTGTAA 60.081 41.667 9.46 0.00 0.00 2.41
297 298 5.063880 GCAATAGACCGGAATCCTTGTAAT 58.936 41.667 9.46 0.00 0.00 1.89
298 299 5.049405 GCAATAGACCGGAATCCTTGTAATG 60.049 44.000 9.46 0.00 0.00 1.90
299 300 3.560636 AGACCGGAATCCTTGTAATGG 57.439 47.619 9.46 0.00 0.00 3.16
300 301 2.844348 AGACCGGAATCCTTGTAATGGT 59.156 45.455 9.46 0.00 31.98 3.55
301 302 3.265995 AGACCGGAATCCTTGTAATGGTT 59.734 43.478 9.46 0.00 31.98 3.67
302 303 3.617284 ACCGGAATCCTTGTAATGGTTC 58.383 45.455 9.46 0.00 31.98 3.62
303 304 2.949644 CCGGAATCCTTGTAATGGTTCC 59.050 50.000 0.00 2.84 37.66 3.62
304 305 2.949644 CGGAATCCTTGTAATGGTTCCC 59.050 50.000 0.00 0.00 37.70 3.97
305 306 3.296854 GGAATCCTTGTAATGGTTCCCC 58.703 50.000 0.00 0.00 36.37 4.81
306 307 2.729028 ATCCTTGTAATGGTTCCCCG 57.271 50.000 0.00 0.00 31.98 5.73
307 308 0.621609 TCCTTGTAATGGTTCCCCGG 59.378 55.000 0.00 0.00 31.98 5.73
308 309 1.035385 CCTTGTAATGGTTCCCCGGC 61.035 60.000 0.00 0.00 0.00 6.13
309 310 0.034477 CTTGTAATGGTTCCCCGGCT 60.034 55.000 0.00 0.00 0.00 5.52
310 311 0.322997 TTGTAATGGTTCCCCGGCTG 60.323 55.000 0.00 0.00 0.00 4.85
311 312 1.301954 GTAATGGTTCCCCGGCTGT 59.698 57.895 0.00 0.00 0.00 4.40
312 313 0.746923 GTAATGGTTCCCCGGCTGTC 60.747 60.000 0.00 0.00 0.00 3.51
313 314 2.246761 TAATGGTTCCCCGGCTGTCG 62.247 60.000 0.00 0.00 38.88 4.35
315 316 4.754667 GGTTCCCCGGCTGTCGTC 62.755 72.222 0.00 0.00 37.11 4.20
316 317 3.692406 GTTCCCCGGCTGTCGTCT 61.692 66.667 0.00 0.00 37.11 4.18
317 318 3.691342 TTCCCCGGCTGTCGTCTG 61.691 66.667 0.00 0.00 37.11 3.51
322 323 4.731612 CGGCTGTCGTCTGCTGCT 62.732 66.667 10.86 0.00 37.89 4.24
323 324 3.117171 GGCTGTCGTCTGCTGCTG 61.117 66.667 10.86 0.00 38.34 4.41
324 325 2.356793 GCTGTCGTCTGCTGCTGT 60.357 61.111 0.00 0.00 35.98 4.40
325 326 1.080501 GCTGTCGTCTGCTGCTGTA 60.081 57.895 0.00 0.00 35.98 2.74
326 327 0.667487 GCTGTCGTCTGCTGCTGTAA 60.667 55.000 0.00 0.00 35.98 2.41
327 328 2.001812 CTGTCGTCTGCTGCTGTAAT 57.998 50.000 0.00 0.00 0.00 1.89
328 329 2.735444 GCTGTCGTCTGCTGCTGTAATA 60.735 50.000 0.00 0.00 35.98 0.98
329 330 3.711086 CTGTCGTCTGCTGCTGTAATAT 58.289 45.455 0.00 0.00 0.00 1.28
330 331 3.447742 TGTCGTCTGCTGCTGTAATATG 58.552 45.455 0.00 0.00 0.00 1.78
331 332 2.219674 GTCGTCTGCTGCTGTAATATGC 59.780 50.000 0.00 0.00 0.00 3.14
332 333 2.101415 TCGTCTGCTGCTGTAATATGCT 59.899 45.455 0.00 0.00 0.00 3.79
333 334 2.474359 CGTCTGCTGCTGTAATATGCTC 59.526 50.000 0.00 0.00 0.00 4.26
334 335 2.805099 GTCTGCTGCTGTAATATGCTCC 59.195 50.000 0.00 0.00 0.00 4.70
335 336 2.702478 TCTGCTGCTGTAATATGCTCCT 59.298 45.455 0.00 0.00 0.00 3.69
336 337 2.806818 CTGCTGCTGTAATATGCTCCTG 59.193 50.000 0.00 0.00 0.00 3.86
337 338 2.171237 TGCTGCTGTAATATGCTCCTGT 59.829 45.455 0.00 0.00 0.00 4.00
338 339 3.209410 GCTGCTGTAATATGCTCCTGTT 58.791 45.455 0.00 0.00 0.00 3.16
339 340 3.629398 GCTGCTGTAATATGCTCCTGTTT 59.371 43.478 0.00 0.00 0.00 2.83
340 341 4.096984 GCTGCTGTAATATGCTCCTGTTTT 59.903 41.667 0.00 0.00 0.00 2.43
341 342 5.393461 GCTGCTGTAATATGCTCCTGTTTTT 60.393 40.000 0.00 0.00 0.00 1.94
342 343 6.194796 TGCTGTAATATGCTCCTGTTTTTC 57.805 37.500 0.00 0.00 0.00 2.29
343 344 5.945784 TGCTGTAATATGCTCCTGTTTTTCT 59.054 36.000 0.00 0.00 0.00 2.52
344 345 6.434028 TGCTGTAATATGCTCCTGTTTTTCTT 59.566 34.615 0.00 0.00 0.00 2.52
345 346 7.039784 TGCTGTAATATGCTCCTGTTTTTCTTT 60.040 33.333 0.00 0.00 0.00 2.52
346 347 7.486232 GCTGTAATATGCTCCTGTTTTTCTTTC 59.514 37.037 0.00 0.00 0.00 2.62
347 348 8.402798 TGTAATATGCTCCTGTTTTTCTTTCA 57.597 30.769 0.00 0.00 0.00 2.69
348 349 8.855110 TGTAATATGCTCCTGTTTTTCTTTCAA 58.145 29.630 0.00 0.00 0.00 2.69
349 350 9.691362 GTAATATGCTCCTGTTTTTCTTTCAAA 57.309 29.630 0.00 0.00 0.00 2.69
351 352 8.767478 ATATGCTCCTGTTTTTCTTTCAAATG 57.233 30.769 0.00 0.00 0.00 2.32
352 353 5.976458 TGCTCCTGTTTTTCTTTCAAATGT 58.024 33.333 0.00 0.00 0.00 2.71
353 354 6.405538 TGCTCCTGTTTTTCTTTCAAATGTT 58.594 32.000 0.00 0.00 0.00 2.71
354 355 6.313411 TGCTCCTGTTTTTCTTTCAAATGTTG 59.687 34.615 0.00 0.00 0.00 3.33
355 356 6.313658 GCTCCTGTTTTTCTTTCAAATGTTGT 59.686 34.615 0.00 0.00 0.00 3.32
356 357 7.148423 GCTCCTGTTTTTCTTTCAAATGTTGTT 60.148 33.333 0.00 0.00 0.00 2.83
357 358 8.027440 TCCTGTTTTTCTTTCAAATGTTGTTG 57.973 30.769 0.00 0.00 0.00 3.33
358 359 7.659390 TCCTGTTTTTCTTTCAAATGTTGTTGT 59.341 29.630 0.00 0.00 0.00 3.32
359 360 8.288913 CCTGTTTTTCTTTCAAATGTTGTTGTT 58.711 29.630 0.00 0.00 0.00 2.83
360 361 9.662545 CTGTTTTTCTTTCAAATGTTGTTGTTT 57.337 25.926 0.00 0.00 0.00 2.83
366 367 9.823098 TTCTTTCAAATGTTGTTGTTTTCATTG 57.177 25.926 0.00 0.00 32.05 2.82
367 368 9.212641 TCTTTCAAATGTTGTTGTTTTCATTGA 57.787 25.926 0.00 0.00 32.05 2.57
368 369 9.991388 CTTTCAAATGTTGTTGTTTTCATTGAT 57.009 25.926 0.00 0.00 32.05 2.57
370 371 9.770503 TTCAAATGTTGTTGTTTTCATTGATTG 57.229 25.926 0.00 0.00 32.05 2.67
371 372 7.909121 TCAAATGTTGTTGTTTTCATTGATTGC 59.091 29.630 0.00 0.00 32.05 3.56
372 373 7.556733 AATGTTGTTGTTTTCATTGATTGCT 57.443 28.000 0.00 0.00 0.00 3.91
373 374 6.586868 TGTTGTTGTTTTCATTGATTGCTC 57.413 33.333 0.00 0.00 0.00 4.26
374 375 5.231779 TGTTGTTGTTTTCATTGATTGCTCG 59.768 36.000 0.00 0.00 0.00 5.03
375 376 4.930963 TGTTGTTTTCATTGATTGCTCGT 58.069 34.783 0.00 0.00 0.00 4.18
376 377 4.739228 TGTTGTTTTCATTGATTGCTCGTG 59.261 37.500 0.00 0.00 0.00 4.35
377 378 3.899734 TGTTTTCATTGATTGCTCGTGG 58.100 40.909 0.00 0.00 0.00 4.94
378 379 3.244976 GTTTTCATTGATTGCTCGTGGG 58.755 45.455 0.00 0.00 0.00 4.61
379 380 1.462616 TTCATTGATTGCTCGTGGGG 58.537 50.000 0.00 0.00 0.00 4.96
380 381 0.617935 TCATTGATTGCTCGTGGGGA 59.382 50.000 0.00 0.00 0.00 4.81
381 382 0.734889 CATTGATTGCTCGTGGGGAC 59.265 55.000 0.00 0.00 0.00 4.46
382 383 0.744414 ATTGATTGCTCGTGGGGACG 60.744 55.000 0.00 0.00 0.00 4.79
383 384 1.822114 TTGATTGCTCGTGGGGACGA 61.822 55.000 0.00 0.00 40.06 4.20
395 396 4.078516 GGACGAGTTCCCCGTGGG 62.079 72.222 0.00 0.00 46.11 4.61
396 397 3.308705 GACGAGTTCCCCGTGGGT 61.309 66.667 3.83 0.00 44.74 4.51
397 398 2.845795 ACGAGTTCCCCGTGGGTT 60.846 61.111 3.83 0.00 44.74 4.11
398 399 2.387476 GACGAGTTCCCCGTGGGTTT 62.387 60.000 3.83 0.00 44.74 3.27
399 400 1.120795 ACGAGTTCCCCGTGGGTTTA 61.121 55.000 3.83 0.00 44.74 2.01
400 401 0.390735 CGAGTTCCCCGTGGGTTTAG 60.391 60.000 3.83 0.00 44.74 1.85
401 402 0.978907 GAGTTCCCCGTGGGTTTAGA 59.021 55.000 3.83 0.00 44.74 2.10
402 403 1.348696 GAGTTCCCCGTGGGTTTAGAA 59.651 52.381 3.83 0.00 44.74 2.10
403 404 1.776063 AGTTCCCCGTGGGTTTAGAAA 59.224 47.619 3.83 0.00 44.74 2.52
404 405 2.175284 AGTTCCCCGTGGGTTTAGAAAA 59.825 45.455 3.83 0.00 44.74 2.29
405 406 2.275134 TCCCCGTGGGTTTAGAAAAC 57.725 50.000 3.83 0.00 44.74 2.43
406 407 1.202915 TCCCCGTGGGTTTAGAAAACC 60.203 52.381 12.21 12.21 46.16 3.27
422 423 2.897972 CCCGACGGGTTTAGAGGG 59.102 66.667 25.54 0.00 38.25 4.30
423 424 2.186125 CCGACGGGTTTAGAGGGC 59.814 66.667 5.81 0.00 0.00 5.19
424 425 2.202703 CGACGGGTTTAGAGGGCG 60.203 66.667 0.00 0.00 0.00 6.13
425 426 2.186125 GACGGGTTTAGAGGGCGG 59.814 66.667 0.00 0.00 0.00 6.13
426 427 3.381333 GACGGGTTTAGAGGGCGGG 62.381 68.421 0.00 0.00 0.00 6.13
427 428 4.851179 CGGGTTTAGAGGGCGGGC 62.851 72.222 0.00 0.00 0.00 6.13
428 429 4.851179 GGGTTTAGAGGGCGGGCG 62.851 72.222 0.00 0.00 0.00 6.13
429 430 3.777910 GGTTTAGAGGGCGGGCGA 61.778 66.667 0.00 0.00 0.00 5.54
430 431 2.266689 GTTTAGAGGGCGGGCGAA 59.733 61.111 0.00 0.00 0.00 4.70
431 432 1.376295 GTTTAGAGGGCGGGCGAAA 60.376 57.895 0.00 0.00 0.00 3.46
432 433 0.956902 GTTTAGAGGGCGGGCGAAAA 60.957 55.000 0.00 0.00 0.00 2.29
433 434 0.034863 TTTAGAGGGCGGGCGAAAAT 60.035 50.000 0.00 0.00 0.00 1.82
434 435 0.034863 TTAGAGGGCGGGCGAAAATT 60.035 50.000 0.00 0.00 0.00 1.82
435 436 0.034863 TAGAGGGCGGGCGAAAATTT 60.035 50.000 0.00 0.00 0.00 1.82
436 437 0.034863 AGAGGGCGGGCGAAAATTTA 60.035 50.000 0.00 0.00 0.00 1.40
437 438 0.812549 GAGGGCGGGCGAAAATTTAA 59.187 50.000 0.00 0.00 0.00 1.52
438 439 0.528924 AGGGCGGGCGAAAATTTAAC 59.471 50.000 0.00 0.00 0.00 2.01
439 440 0.458889 GGGCGGGCGAAAATTTAACC 60.459 55.000 0.00 0.00 0.00 2.85
440 441 0.458889 GGCGGGCGAAAATTTAACCC 60.459 55.000 11.39 11.39 37.19 4.11
441 442 0.458889 GCGGGCGAAAATTTAACCCC 60.459 55.000 14.38 11.72 37.25 4.95
442 443 3.725485 GGGCGAAAATTTAACCCCG 57.275 52.632 10.61 3.23 34.23 5.73
443 444 0.889994 GGGCGAAAATTTAACCCCGT 59.110 50.000 10.61 0.00 34.23 5.28
444 445 1.403116 GGGCGAAAATTTAACCCCGTG 60.403 52.381 10.61 0.00 34.23 4.94
445 446 1.342555 GCGAAAATTTAACCCCGTGC 58.657 50.000 0.00 0.00 0.00 5.34
446 447 1.336056 GCGAAAATTTAACCCCGTGCA 60.336 47.619 0.00 0.00 0.00 4.57
447 448 2.321263 CGAAAATTTAACCCCGTGCAC 58.679 47.619 6.82 6.82 0.00 4.57
448 449 2.321263 GAAAATTTAACCCCGTGCACG 58.679 47.619 31.77 31.77 39.44 5.34
449 450 1.320507 AAATTTAACCCCGTGCACGT 58.679 45.000 34.81 20.58 37.74 4.49
450 451 1.320507 AATTTAACCCCGTGCACGTT 58.679 45.000 34.81 25.13 37.74 3.99
451 452 0.594110 ATTTAACCCCGTGCACGTTG 59.406 50.000 34.81 26.79 37.74 4.10
452 453 0.463295 TTTAACCCCGTGCACGTTGA 60.463 50.000 34.81 18.35 37.74 3.18
453 454 0.250381 TTAACCCCGTGCACGTTGAT 60.250 50.000 34.81 22.23 37.74 2.57
454 455 0.951525 TAACCCCGTGCACGTTGATG 60.952 55.000 34.81 20.29 37.74 3.07
455 456 3.430862 CCCCGTGCACGTTGATGG 61.431 66.667 34.81 27.17 37.74 3.51
456 457 3.430862 CCCGTGCACGTTGATGGG 61.431 66.667 34.81 24.22 37.74 4.00
457 458 3.430862 CCGTGCACGTTGATGGGG 61.431 66.667 34.81 15.31 37.74 4.96
458 459 2.358125 CGTGCACGTTGATGGGGA 60.358 61.111 30.50 0.00 34.11 4.81
459 460 2.677003 CGTGCACGTTGATGGGGAC 61.677 63.158 30.50 0.00 34.11 4.46
460 461 2.358125 TGCACGTTGATGGGGACG 60.358 61.111 0.00 0.00 44.34 4.79
461 462 3.124921 GCACGTTGATGGGGACGG 61.125 66.667 0.00 0.00 43.16 4.79
462 463 2.435938 CACGTTGATGGGGACGGG 60.436 66.667 0.00 0.00 43.16 5.28
463 464 3.712907 ACGTTGATGGGGACGGGG 61.713 66.667 0.90 0.00 43.16 5.73
464 465 3.395702 CGTTGATGGGGACGGGGA 61.396 66.667 0.00 0.00 35.74 4.81
465 466 2.271173 GTTGATGGGGACGGGGAC 59.729 66.667 0.00 0.00 0.00 4.46
478 479 3.276281 GGGGACGGGTTTGCTATTT 57.724 52.632 0.00 0.00 0.00 1.40
479 480 1.552578 GGGGACGGGTTTGCTATTTT 58.447 50.000 0.00 0.00 0.00 1.82
480 481 1.475280 GGGGACGGGTTTGCTATTTTC 59.525 52.381 0.00 0.00 0.00 2.29
481 482 2.443416 GGGACGGGTTTGCTATTTTCT 58.557 47.619 0.00 0.00 0.00 2.52
482 483 2.422479 GGGACGGGTTTGCTATTTTCTC 59.578 50.000 0.00 0.00 0.00 2.87
483 484 2.095372 GGACGGGTTTGCTATTTTCTCG 59.905 50.000 0.00 0.00 0.00 4.04
484 485 2.740447 GACGGGTTTGCTATTTTCTCGT 59.260 45.455 0.00 0.00 0.00 4.18
485 486 2.482721 ACGGGTTTGCTATTTTCTCGTG 59.517 45.455 0.00 0.00 0.00 4.35
486 487 2.159572 CGGGTTTGCTATTTTCTCGTGG 60.160 50.000 0.00 0.00 0.00 4.94
487 488 2.163613 GGGTTTGCTATTTTCTCGTGGG 59.836 50.000 0.00 0.00 0.00 4.61
488 489 3.078837 GGTTTGCTATTTTCTCGTGGGA 58.921 45.455 0.00 0.00 0.00 4.37
489 490 3.504520 GGTTTGCTATTTTCTCGTGGGAA 59.495 43.478 0.00 0.00 0.00 3.97
490 491 4.157840 GGTTTGCTATTTTCTCGTGGGAAT 59.842 41.667 0.00 0.00 0.00 3.01
491 492 4.963276 TTGCTATTTTCTCGTGGGAATG 57.037 40.909 0.00 0.00 0.00 2.67
492 493 3.278574 TGCTATTTTCTCGTGGGAATGG 58.721 45.455 0.00 0.00 0.00 3.16
493 494 2.618709 GCTATTTTCTCGTGGGAATGGG 59.381 50.000 0.00 0.00 0.00 4.00
494 495 2.899303 ATTTTCTCGTGGGAATGGGT 57.101 45.000 0.00 0.00 0.00 4.51
495 496 2.668144 TTTTCTCGTGGGAATGGGTT 57.332 45.000 0.00 0.00 0.00 4.11
496 497 2.668144 TTTCTCGTGGGAATGGGTTT 57.332 45.000 0.00 0.00 0.00 3.27
497 498 1.904287 TTCTCGTGGGAATGGGTTTG 58.096 50.000 0.00 0.00 0.00 2.93
498 499 0.037590 TCTCGTGGGAATGGGTTTGG 59.962 55.000 0.00 0.00 0.00 3.28
499 500 0.965363 CTCGTGGGAATGGGTTTGGG 60.965 60.000 0.00 0.00 0.00 4.12
500 501 2.645192 CGTGGGAATGGGTTTGGGC 61.645 63.158 0.00 0.00 0.00 5.36
501 502 1.535202 GTGGGAATGGGTTTGGGCA 60.535 57.895 0.00 0.00 0.00 5.36
502 503 1.124477 GTGGGAATGGGTTTGGGCAA 61.124 55.000 0.00 0.00 0.00 4.52
503 504 0.835543 TGGGAATGGGTTTGGGCAAG 60.836 55.000 0.00 0.00 0.00 4.01
504 505 1.296392 GGAATGGGTTTGGGCAAGC 59.704 57.895 0.00 0.00 0.00 4.01
505 506 1.479368 GGAATGGGTTTGGGCAAGCA 61.479 55.000 0.00 0.00 34.23 3.91
506 507 0.396060 GAATGGGTTTGGGCAAGCAA 59.604 50.000 0.00 0.00 34.23 3.91
507 508 0.842635 AATGGGTTTGGGCAAGCAAA 59.157 45.000 0.00 0.00 34.23 3.68
508 509 0.842635 ATGGGTTTGGGCAAGCAAAA 59.157 45.000 0.00 0.00 34.23 2.44
509 510 0.107459 TGGGTTTGGGCAAGCAAAAC 60.107 50.000 11.77 11.77 34.23 2.43
510 511 2.701587 GGTTTGGGCAAGCAAAACC 58.298 52.632 19.27 19.27 44.29 3.27
511 512 0.180171 GGTTTGGGCAAGCAAAACCT 59.820 50.000 23.45 0.00 46.11 3.50
512 513 1.298602 GTTTGGGCAAGCAAAACCTG 58.701 50.000 9.95 0.00 0.00 4.00
513 514 0.179936 TTTGGGCAAGCAAAACCTGG 59.820 50.000 0.00 0.00 0.00 4.45
514 515 0.980231 TTGGGCAAGCAAAACCTGGT 60.980 50.000 0.00 0.00 37.35 4.00
515 516 1.069596 GGGCAAGCAAAACCTGGTG 59.930 57.895 0.00 0.00 35.42 4.17
516 517 1.069596 GGCAAGCAAAACCTGGTGG 59.930 57.895 0.00 0.00 35.42 4.61
517 518 1.398958 GGCAAGCAAAACCTGGTGGA 61.399 55.000 0.00 0.00 35.42 4.02
518 519 0.681175 GCAAGCAAAACCTGGTGGAT 59.319 50.000 0.00 0.00 35.42 3.41
519 520 1.070601 GCAAGCAAAACCTGGTGGATT 59.929 47.619 0.00 0.00 35.42 3.01
520 521 2.485302 GCAAGCAAAACCTGGTGGATTT 60.485 45.455 0.00 0.00 38.62 2.17
521 522 3.392882 CAAGCAAAACCTGGTGGATTTC 58.607 45.455 0.00 0.00 36.39 2.17
522 523 1.613437 AGCAAAACCTGGTGGATTTCG 59.387 47.619 0.00 0.00 36.39 3.46
523 524 1.339929 GCAAAACCTGGTGGATTTCGT 59.660 47.619 0.00 0.00 36.39 3.85
524 525 2.607038 GCAAAACCTGGTGGATTTCGTC 60.607 50.000 0.00 0.00 36.39 4.20
532 533 3.184206 GGATTTCGTCCCCGTTGC 58.816 61.111 0.00 0.00 41.50 4.17
533 534 2.404186 GGATTTCGTCCCCGTTGCC 61.404 63.158 0.00 0.00 41.50 4.52
534 535 1.673009 GATTTCGTCCCCGTTGCCA 60.673 57.895 0.00 0.00 35.01 4.92
535 536 1.001393 ATTTCGTCCCCGTTGCCAT 60.001 52.632 0.00 0.00 35.01 4.40
536 537 1.029947 ATTTCGTCCCCGTTGCCATC 61.030 55.000 0.00 0.00 35.01 3.51
537 538 2.119484 TTTCGTCCCCGTTGCCATCT 62.119 55.000 0.00 0.00 35.01 2.90
538 539 2.046314 CGTCCCCGTTGCCATCTT 60.046 61.111 0.00 0.00 0.00 2.40
539 540 2.398554 CGTCCCCGTTGCCATCTTG 61.399 63.158 0.00 0.00 0.00 3.02
540 541 1.002624 GTCCCCGTTGCCATCTTGA 60.003 57.895 0.00 0.00 0.00 3.02
541 542 0.608035 GTCCCCGTTGCCATCTTGAA 60.608 55.000 0.00 0.00 0.00 2.69
542 543 0.331278 TCCCCGTTGCCATCTTGAAT 59.669 50.000 0.00 0.00 0.00 2.57
543 544 0.740737 CCCCGTTGCCATCTTGAATC 59.259 55.000 0.00 0.00 0.00 2.52
544 545 0.740737 CCCGTTGCCATCTTGAATCC 59.259 55.000 0.00 0.00 0.00 3.01
545 546 0.378257 CCGTTGCCATCTTGAATCCG 59.622 55.000 0.00 0.00 0.00 4.18
546 547 1.086696 CGTTGCCATCTTGAATCCGT 58.913 50.000 0.00 0.00 0.00 4.69
547 548 2.276201 CGTTGCCATCTTGAATCCGTA 58.724 47.619 0.00 0.00 0.00 4.02
548 549 2.030457 CGTTGCCATCTTGAATCCGTAC 59.970 50.000 0.00 0.00 0.00 3.67
549 550 3.006940 GTTGCCATCTTGAATCCGTACA 58.993 45.455 0.00 0.00 0.00 2.90
550 551 2.905075 TGCCATCTTGAATCCGTACAG 58.095 47.619 0.00 0.00 0.00 2.74
551 552 2.236146 TGCCATCTTGAATCCGTACAGT 59.764 45.455 0.00 0.00 0.00 3.55
552 553 2.866762 GCCATCTTGAATCCGTACAGTC 59.133 50.000 0.00 0.00 0.00 3.51
553 554 3.430929 GCCATCTTGAATCCGTACAGTCT 60.431 47.826 0.00 0.00 0.00 3.24
554 555 4.202121 GCCATCTTGAATCCGTACAGTCTA 60.202 45.833 0.00 0.00 0.00 2.59
555 556 5.509840 GCCATCTTGAATCCGTACAGTCTAT 60.510 44.000 0.00 0.00 0.00 1.98
556 557 6.516718 CCATCTTGAATCCGTACAGTCTATT 58.483 40.000 0.00 0.00 0.00 1.73
557 558 6.986817 CCATCTTGAATCCGTACAGTCTATTT 59.013 38.462 0.00 0.00 0.00 1.40
558 559 8.141909 CCATCTTGAATCCGTACAGTCTATTTA 58.858 37.037 0.00 0.00 0.00 1.40
559 560 9.698309 CATCTTGAATCCGTACAGTCTATTTAT 57.302 33.333 0.00 0.00 0.00 1.40
560 561 9.915629 ATCTTGAATCCGTACAGTCTATTTATC 57.084 33.333 0.00 0.00 0.00 1.75
561 562 8.358148 TCTTGAATCCGTACAGTCTATTTATCC 58.642 37.037 0.00 0.00 0.00 2.59
562 563 6.989659 TGAATCCGTACAGTCTATTTATCCC 58.010 40.000 0.00 0.00 0.00 3.85
563 564 6.781014 TGAATCCGTACAGTCTATTTATCCCT 59.219 38.462 0.00 0.00 0.00 4.20
564 565 6.591750 ATCCGTACAGTCTATTTATCCCTG 57.408 41.667 0.00 0.00 0.00 4.45
565 566 4.280174 TCCGTACAGTCTATTTATCCCTGC 59.720 45.833 0.00 0.00 0.00 4.85
613 614 1.778484 AGAGTAGTAGGGGAGAGGCTC 59.222 57.143 6.34 6.34 0.00 4.70
650 651 4.379339 AGAATCTGACTTTCCGAGCTAC 57.621 45.455 0.00 0.00 0.00 3.58
698 702 7.011828 TCGAAACTAACTTGTCCTCTTTTTG 57.988 36.000 0.00 0.00 0.00 2.44
700 704 7.765360 TCGAAACTAACTTGTCCTCTTTTTGTA 59.235 33.333 0.00 0.00 0.00 2.41
701 705 8.392612 CGAAACTAACTTGTCCTCTTTTTGTAA 58.607 33.333 0.00 0.00 0.00 2.41
702 706 9.499585 GAAACTAACTTGTCCTCTTTTTGTAAC 57.500 33.333 0.00 0.00 0.00 2.50
703 707 7.563888 ACTAACTTGTCCTCTTTTTGTAACC 57.436 36.000 0.00 0.00 0.00 2.85
704 708 7.114095 ACTAACTTGTCCTCTTTTTGTAACCA 58.886 34.615 0.00 0.00 0.00 3.67
716 731 6.433404 TCTTTTTGTAACCAAACGGGCATATA 59.567 34.615 0.00 0.00 40.19 0.86
717 732 6.777213 TTTTGTAACCAAACGGGCATATAT 57.223 33.333 0.00 0.00 40.19 0.86
718 733 7.876936 TTTTGTAACCAAACGGGCATATATA 57.123 32.000 0.00 0.00 40.19 0.86
719 734 8.466617 TTTTGTAACCAAACGGGCATATATAT 57.533 30.769 0.00 0.00 40.19 0.86
720 735 9.570468 TTTTGTAACCAAACGGGCATATATATA 57.430 29.630 0.00 0.00 40.19 0.86
721 736 9.742144 TTTGTAACCAAACGGGCATATATATAT 57.258 29.630 0.00 0.00 42.05 0.86
819 834 2.060326 TCTTACCGCTGAGTTCAACG 57.940 50.000 0.00 0.00 35.44 4.10
829 848 4.638963 GCTGAGTTCAACGTATAGCAAAC 58.361 43.478 0.00 0.00 0.00 2.93
886 915 2.990967 TTCCGGTCCCGCTTACGT 60.991 61.111 0.00 0.00 37.70 3.57
916 945 4.065281 CGGGAGGTCGTTCCGCTT 62.065 66.667 0.00 0.00 41.99 4.68
917 946 2.346365 GGGAGGTCGTTCCGCTTT 59.654 61.111 3.86 0.00 41.99 3.51
964 1025 1.796796 CTAGCTGCTTGCCGGAAAC 59.203 57.895 7.79 0.00 44.23 2.78
969 1030 0.667993 CTGCTTGCCGGAAACAAGAA 59.332 50.000 20.50 11.59 45.99 2.52
1027 1088 2.060383 CCGCTGGAGGATGAGGACA 61.060 63.158 0.00 0.00 0.00 4.02
1099 1160 3.592814 CCTCCCTCGTATGCGCGA 61.593 66.667 12.10 0.00 39.22 5.87
1171 1232 3.003763 ACCCGGAACCTCCTCTGC 61.004 66.667 0.73 0.00 33.30 4.26
1290 1753 2.700371 TCTTCACAGCTTCAGGAGACAA 59.300 45.455 0.00 0.00 0.00 3.18
1295 1758 1.071385 CAGCTTCAGGAGACAACACCT 59.929 52.381 0.00 0.00 37.58 4.00
1320 1783 0.977395 CTCCTCCGTTGGGTTTCTCT 59.023 55.000 0.00 0.00 33.83 3.10
1377 1847 3.622060 CTTGGACCCGCCCAATCGT 62.622 63.158 0.00 0.00 44.44 3.73
1433 1903 2.101415 GGCTGGATTGGGAATTACTTGC 59.899 50.000 0.00 0.00 0.00 4.01
1470 1940 2.220224 CGTCATGCTCAGCGAGTCG 61.220 63.158 8.54 8.54 31.39 4.18
1591 2067 1.896660 AGCGCCACGGTGATTTGTT 60.897 52.632 10.28 0.00 35.85 2.83
1612 2088 0.249120 TGACGATCAAGACGGGCATT 59.751 50.000 0.00 0.00 34.93 3.56
1737 2213 4.315803 GTGTATGGGGGAATATTGTCTCG 58.684 47.826 0.00 0.00 0.00 4.04
1863 2347 1.701847 AGGCAGACTCTTGGTGTCATT 59.298 47.619 0.00 0.00 36.94 2.57
1962 2446 0.667184 TCGCCGTTAAGTCGAAACCC 60.667 55.000 0.00 0.00 0.00 4.11
1976 2460 2.032030 CGAAACCCGGCATTCATATGTC 60.032 50.000 15.19 0.00 34.12 3.06
2069 2571 4.443978 TCAATCAATTGGAGGGGATCTC 57.556 45.455 5.42 0.00 41.71 2.75
2077 2579 1.207791 GGAGGGGATCTCTTCTTGCA 58.792 55.000 4.51 0.00 42.10 4.08
2120 2622 3.387050 GTGGGGTATGACGAGGAGTTAAT 59.613 47.826 0.00 0.00 0.00 1.40
2356 4438 5.419542 TGTGATTAGTTGTCTACTCCATGC 58.580 41.667 0.00 0.00 38.33 4.06
2570 4666 8.519526 TCCAAATTCGAGCAATAACAAGTAATT 58.480 29.630 0.00 0.00 0.00 1.40
2652 4759 5.298347 GGCATTAACCTGTACATAGTCTCC 58.702 45.833 0.00 0.00 0.00 3.71
3162 9089 3.059352 ACTTGGAGATTGTACTGCACC 57.941 47.619 0.00 0.00 37.91 5.01
3208 9135 4.170292 AGCTGCTTCACTTTTTAGCATG 57.830 40.909 0.00 0.00 43.33 4.06
3209 9136 3.822735 AGCTGCTTCACTTTTTAGCATGA 59.177 39.130 0.00 0.00 43.33 3.07
3333 9260 2.391616 AGCAAGCATCGTCTGAATGA 57.608 45.000 0.00 0.00 0.00 2.57
3481 9411 2.782341 CTCTCATTCCCCATTTCCCTCT 59.218 50.000 0.00 0.00 0.00 3.69
3482 9412 2.511218 TCTCATTCCCCATTTCCCTCTG 59.489 50.000 0.00 0.00 0.00 3.35
3484 9414 3.133665 TCATTCCCCATTTCCCTCTGAT 58.866 45.455 0.00 0.00 0.00 2.90
3485 9415 3.117398 TCATTCCCCATTTCCCTCTGATG 60.117 47.826 0.00 0.00 0.00 3.07
3490 9420 2.555199 CCATTTCCCTCTGATGACGAC 58.445 52.381 0.00 0.00 0.00 4.34
3536 9466 1.376683 TGGTTTCTGCCGGGATTCG 60.377 57.895 2.18 0.00 38.88 3.34
3561 9491 4.301027 GGGAGGCGACCATAGGCG 62.301 72.222 6.17 0.00 39.33 5.52
3580 9510 1.766143 GCAAATAGGCGACGCAGAGG 61.766 60.000 23.09 6.63 0.00 3.69
3647 9577 0.806492 GACGTTTCGAGGGATGGCTC 60.806 60.000 0.00 0.00 0.00 4.70
3664 9594 4.007940 CGGTTTCGTGGTGGCGTG 62.008 66.667 0.00 0.00 0.00 5.34
3697 9627 2.032681 GGGGGCATGATAGCGACC 59.967 66.667 0.00 0.00 34.64 4.79
3709 9639 1.727511 TAGCGACCGGTATTGACCCG 61.728 60.000 7.34 6.08 43.64 5.28
3710 9640 2.887360 CGACCGGTATTGACCCGT 59.113 61.111 7.34 0.00 43.64 5.28
3725 9655 4.817063 CGTGCGGCAGCCAAATCG 62.817 66.667 13.30 6.58 44.33 3.34
3734 9664 0.095935 CAGCCAAATCGAGACAAGCG 59.904 55.000 0.00 0.00 0.00 4.68
3758 9688 1.604755 CGACAATTTTTGTGGTCGGGA 59.395 47.619 5.22 0.00 46.70 5.14
3798 9728 2.279918 GTATGCGGGTAGGCGTGG 60.280 66.667 0.00 0.00 35.06 4.94
3846 9776 0.037590 GTTGTCATGGGGGTAGTGCA 59.962 55.000 0.00 0.00 0.00 4.57
3848 9778 1.130678 TGTCATGGGGGTAGTGCACA 61.131 55.000 21.04 1.84 0.00 4.57
3860 9790 4.182433 TGCACAAGGGGCACGACA 62.182 61.111 0.00 0.00 36.11 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.361571 TCAATAGAGTAACTATCCGTGGCAA 59.638 40.000 0.00 0.00 40.49 4.52
4 5 9.408069 GGTATTTCAATAGAGTAACTATCCGTG 57.592 37.037 0.00 0.00 40.49 4.94
5 6 9.364653 AGGTATTTCAATAGAGTAACTATCCGT 57.635 33.333 0.00 0.00 40.49 4.69
28 29 9.654663 GTCATTTTGTTGTAATAGAGACTAGGT 57.345 33.333 0.00 0.00 0.00 3.08
29 30 9.877178 AGTCATTTTGTTGTAATAGAGACTAGG 57.123 33.333 0.00 0.00 31.52 3.02
31 32 9.151471 GCAGTCATTTTGTTGTAATAGAGACTA 57.849 33.333 0.00 0.00 32.01 2.59
32 33 7.119846 GGCAGTCATTTTGTTGTAATAGAGACT 59.880 37.037 0.00 0.00 33.32 3.24
33 34 7.244192 GGCAGTCATTTTGTTGTAATAGAGAC 58.756 38.462 0.00 0.00 0.00 3.36
34 35 6.374333 GGGCAGTCATTTTGTTGTAATAGAGA 59.626 38.462 0.00 0.00 0.00 3.10
35 36 6.375455 AGGGCAGTCATTTTGTTGTAATAGAG 59.625 38.462 0.00 0.00 0.00 2.43
36 37 6.245408 AGGGCAGTCATTTTGTTGTAATAGA 58.755 36.000 0.00 0.00 0.00 1.98
37 38 6.150976 TGAGGGCAGTCATTTTGTTGTAATAG 59.849 38.462 0.00 0.00 0.00 1.73
38 39 6.007076 TGAGGGCAGTCATTTTGTTGTAATA 58.993 36.000 0.00 0.00 0.00 0.98
39 40 4.832266 TGAGGGCAGTCATTTTGTTGTAAT 59.168 37.500 0.00 0.00 0.00 1.89
40 41 4.211125 TGAGGGCAGTCATTTTGTTGTAA 58.789 39.130 0.00 0.00 0.00 2.41
41 42 3.826524 TGAGGGCAGTCATTTTGTTGTA 58.173 40.909 0.00 0.00 0.00 2.41
42 43 2.665165 TGAGGGCAGTCATTTTGTTGT 58.335 42.857 0.00 0.00 0.00 3.32
43 44 3.581755 CATGAGGGCAGTCATTTTGTTG 58.418 45.455 0.00 0.00 34.81 3.33
44 45 2.028748 GCATGAGGGCAGTCATTTTGTT 60.029 45.455 0.00 0.00 34.81 2.83
45 46 1.547372 GCATGAGGGCAGTCATTTTGT 59.453 47.619 0.00 0.00 34.81 2.83
46 47 1.546923 TGCATGAGGGCAGTCATTTTG 59.453 47.619 0.00 0.00 39.25 2.44
47 48 1.927487 TGCATGAGGGCAGTCATTTT 58.073 45.000 0.00 0.00 39.25 1.82
48 49 1.547372 GTTGCATGAGGGCAGTCATTT 59.453 47.619 0.00 0.00 45.88 2.32
49 50 1.180029 GTTGCATGAGGGCAGTCATT 58.820 50.000 0.00 0.00 45.88 2.57
50 51 0.038599 TGTTGCATGAGGGCAGTCAT 59.961 50.000 0.00 0.00 45.88 3.06
51 52 0.607217 CTGTTGCATGAGGGCAGTCA 60.607 55.000 0.00 0.00 45.88 3.41
52 53 0.321919 TCTGTTGCATGAGGGCAGTC 60.322 55.000 0.00 0.00 45.88 3.51
53 54 0.111061 TTCTGTTGCATGAGGGCAGT 59.889 50.000 0.00 0.00 45.88 4.40
54 55 1.404391 GATTCTGTTGCATGAGGGCAG 59.596 52.381 0.00 0.00 45.88 4.85
55 56 1.005097 AGATTCTGTTGCATGAGGGCA 59.995 47.619 0.00 0.00 43.19 5.36
56 57 1.404391 CAGATTCTGTTGCATGAGGGC 59.596 52.381 5.46 0.00 0.00 5.19
57 58 2.719739 ACAGATTCTGTTGCATGAGGG 58.280 47.619 13.61 0.00 42.59 4.30
67 68 8.474311 GCAGTATTGCGACAAACAGATTCTGT 62.474 42.308 13.61 13.61 42.89 3.41
68 69 5.319139 CAGTATTGCGACAAACAGATTCTG 58.681 41.667 12.17 12.17 37.52 3.02
69 70 4.142816 GCAGTATTGCGACAAACAGATTCT 60.143 41.667 0.00 0.00 41.13 2.40
70 71 4.091424 GCAGTATTGCGACAAACAGATTC 58.909 43.478 0.00 0.00 41.13 2.52
71 72 4.083581 GCAGTATTGCGACAAACAGATT 57.916 40.909 0.00 0.00 41.13 2.40
72 73 3.747099 GCAGTATTGCGACAAACAGAT 57.253 42.857 0.00 0.00 41.13 2.90
84 85 3.994204 TGCAATATGGCAGCAGTATTG 57.006 42.857 18.11 18.11 39.25 1.90
93 94 3.585020 CGGCGCTGCAATATGGCA 61.585 61.111 7.64 4.31 42.53 4.92
94 95 1.298157 TATCGGCGCTGCAATATGGC 61.298 55.000 12.58 0.00 0.00 4.40
95 96 0.443869 GTATCGGCGCTGCAATATGG 59.556 55.000 12.58 0.00 0.00 2.74
96 97 1.127397 CTGTATCGGCGCTGCAATATG 59.873 52.381 12.58 0.00 0.00 1.78
97 98 1.270305 ACTGTATCGGCGCTGCAATAT 60.270 47.619 12.58 1.89 0.00 1.28
98 99 0.104120 ACTGTATCGGCGCTGCAATA 59.896 50.000 12.58 2.00 0.00 1.90
99 100 0.744414 AACTGTATCGGCGCTGCAAT 60.744 50.000 12.58 3.14 0.00 3.56
100 101 0.953471 AAACTGTATCGGCGCTGCAA 60.953 50.000 12.58 0.00 0.00 4.08
101 102 1.375396 AAACTGTATCGGCGCTGCA 60.375 52.632 12.58 0.46 0.00 4.41
102 103 1.060937 CAAACTGTATCGGCGCTGC 59.939 57.895 12.58 0.00 0.00 5.25
103 104 0.796312 AACAAACTGTATCGGCGCTG 59.204 50.000 10.86 10.86 0.00 5.18
104 105 0.796312 CAACAAACTGTATCGGCGCT 59.204 50.000 7.64 0.00 0.00 5.92
105 106 0.793104 GCAACAAACTGTATCGGCGC 60.793 55.000 0.00 0.00 0.00 6.53
106 107 0.515127 TGCAACAAACTGTATCGGCG 59.485 50.000 0.00 0.00 0.00 6.46
107 108 2.697431 TTGCAACAAACTGTATCGGC 57.303 45.000 0.00 0.00 0.00 5.54
108 109 6.117911 TCATATTGCAACAAACTGTATCGG 57.882 37.500 0.00 0.00 0.00 4.18
109 110 6.194463 CCTCATATTGCAACAAACTGTATCG 58.806 40.000 0.00 0.00 0.00 2.92
110 111 5.973565 GCCTCATATTGCAACAAACTGTATC 59.026 40.000 0.00 0.00 0.00 2.24
111 112 5.163519 GGCCTCATATTGCAACAAACTGTAT 60.164 40.000 0.00 0.00 0.00 2.29
112 113 4.157656 GGCCTCATATTGCAACAAACTGTA 59.842 41.667 0.00 0.00 0.00 2.74
113 114 3.056607 GGCCTCATATTGCAACAAACTGT 60.057 43.478 0.00 0.00 0.00 3.55
114 115 3.194116 AGGCCTCATATTGCAACAAACTG 59.806 43.478 0.00 0.00 0.00 3.16
115 116 3.434309 AGGCCTCATATTGCAACAAACT 58.566 40.909 0.00 0.00 0.00 2.66
116 117 3.445096 AGAGGCCTCATATTGCAACAAAC 59.555 43.478 33.90 1.86 0.00 2.93
117 118 3.700538 AGAGGCCTCATATTGCAACAAA 58.299 40.909 33.90 0.00 0.00 2.83
118 119 3.370840 AGAGGCCTCATATTGCAACAA 57.629 42.857 33.90 0.00 0.00 2.83
119 120 4.712051 ATAGAGGCCTCATATTGCAACA 57.288 40.909 33.90 6.34 0.00 3.33
120 121 5.368256 CAATAGAGGCCTCATATTGCAAC 57.632 43.478 30.70 10.89 32.05 4.17
124 125 4.823442 TGTTGCAATAGAGGCCTCATATTG 59.177 41.667 33.56 33.56 39.05 1.90
125 126 5.052693 TGTTGCAATAGAGGCCTCATATT 57.947 39.130 33.90 26.69 0.00 1.28
126 127 4.712051 TGTTGCAATAGAGGCCTCATAT 57.288 40.909 33.90 23.14 0.00 1.78
127 128 4.502105 TTGTTGCAATAGAGGCCTCATA 57.498 40.909 33.90 22.03 0.00 2.15
128 129 3.370840 TTGTTGCAATAGAGGCCTCAT 57.629 42.857 33.90 21.33 0.00 2.90
129 130 2.877097 TTGTTGCAATAGAGGCCTCA 57.123 45.000 33.90 20.05 0.00 3.86
130 131 3.084786 ACTTTGTTGCAATAGAGGCCTC 58.915 45.455 26.22 26.22 0.00 4.70
131 132 3.160679 ACTTTGTTGCAATAGAGGCCT 57.839 42.857 3.86 3.86 0.00 5.19
132 133 3.942130 AACTTTGTTGCAATAGAGGCC 57.058 42.857 16.41 0.00 0.00 5.19
133 134 9.586435 AAATAATAACTTTGTTGCAATAGAGGC 57.414 29.630 16.41 0.00 0.00 4.70
141 142 9.549509 GTCACGATAAATAATAACTTTGTTGCA 57.450 29.630 0.00 0.00 0.00 4.08
142 143 9.006215 GGTCACGATAAATAATAACTTTGTTGC 57.994 33.333 0.00 0.00 0.00 4.17
156 157 8.889717 CCAATACTTAGTTTGGTCACGATAAAT 58.110 33.333 14.05 0.00 38.05 1.40
157 158 7.148373 GCCAATACTTAGTTTGGTCACGATAAA 60.148 37.037 19.52 0.00 43.54 1.40
158 159 6.314400 GCCAATACTTAGTTTGGTCACGATAA 59.686 38.462 19.52 0.00 43.54 1.75
159 160 5.813672 GCCAATACTTAGTTTGGTCACGATA 59.186 40.000 19.52 0.00 43.54 2.92
160 161 4.634443 GCCAATACTTAGTTTGGTCACGAT 59.366 41.667 19.52 0.00 43.54 3.73
161 162 3.998341 GCCAATACTTAGTTTGGTCACGA 59.002 43.478 19.52 0.00 43.54 4.35
162 163 3.749088 TGCCAATACTTAGTTTGGTCACG 59.251 43.478 19.52 0.00 43.54 4.35
163 164 5.699097 TTGCCAATACTTAGTTTGGTCAC 57.301 39.130 19.52 9.75 43.54 3.67
164 165 7.613801 ACATATTGCCAATACTTAGTTTGGTCA 59.386 33.333 19.52 16.21 43.54 4.02
165 166 7.915397 CACATATTGCCAATACTTAGTTTGGTC 59.085 37.037 19.52 14.71 43.54 4.02
166 167 7.630513 GCACATATTGCCAATACTTAGTTTGGT 60.631 37.037 19.52 9.10 46.63 3.67
167 168 6.697019 GCACATATTGCCAATACTTAGTTTGG 59.303 38.462 16.45 16.45 46.63 3.28
168 169 7.684062 GCACATATTGCCAATACTTAGTTTG 57.316 36.000 0.00 0.00 46.63 2.93
183 184 5.053811 TGTGGTAATAGGTCGCACATATTG 58.946 41.667 13.04 0.00 36.02 1.90
184 185 5.284861 TGTGGTAATAGGTCGCACATATT 57.715 39.130 9.82 9.82 38.44 1.28
185 186 4.948341 TGTGGTAATAGGTCGCACATAT 57.052 40.909 0.00 0.00 0.00 1.78
186 187 4.435425 GTTGTGGTAATAGGTCGCACATA 58.565 43.478 0.00 0.00 0.00 2.29
187 188 3.267483 GTTGTGGTAATAGGTCGCACAT 58.733 45.455 0.00 0.00 0.00 3.21
188 189 2.690786 GTTGTGGTAATAGGTCGCACA 58.309 47.619 0.00 0.00 0.00 4.57
189 190 1.657094 CGTTGTGGTAATAGGTCGCAC 59.343 52.381 0.00 0.00 0.00 5.34
190 191 1.545136 TCGTTGTGGTAATAGGTCGCA 59.455 47.619 0.00 0.00 0.00 5.10
191 192 2.159338 TCTCGTTGTGGTAATAGGTCGC 60.159 50.000 0.00 0.00 0.00 5.19
192 193 3.376234 TCTCTCGTTGTGGTAATAGGTCG 59.624 47.826 0.00 0.00 0.00 4.79
193 194 4.978083 TCTCTCGTTGTGGTAATAGGTC 57.022 45.455 0.00 0.00 0.00 3.85
194 195 5.934402 ATTCTCTCGTTGTGGTAATAGGT 57.066 39.130 0.00 0.00 0.00 3.08
195 196 6.594159 ACAAATTCTCTCGTTGTGGTAATAGG 59.406 38.462 0.00 0.00 34.28 2.57
196 197 7.456253 CACAAATTCTCTCGTTGTGGTAATAG 58.544 38.462 7.67 0.00 45.35 1.73
197 198 7.359262 CACAAATTCTCTCGTTGTGGTAATA 57.641 36.000 7.67 0.00 45.35 0.98
198 199 6.241207 CACAAATTCTCTCGTTGTGGTAAT 57.759 37.500 7.67 0.00 45.35 1.89
199 200 5.666969 CACAAATTCTCTCGTTGTGGTAA 57.333 39.130 7.67 0.00 45.35 2.85
204 205 8.450964 CAATATTACCACAAATTCTCTCGTTGT 58.549 33.333 0.00 0.00 35.91 3.32
205 206 7.429340 GCAATATTACCACAAATTCTCTCGTTG 59.571 37.037 0.00 0.00 0.00 4.10
206 207 7.472543 GCAATATTACCACAAATTCTCTCGTT 58.527 34.615 0.00 0.00 0.00 3.85
207 208 6.238103 CGCAATATTACCACAAATTCTCTCGT 60.238 38.462 0.00 0.00 0.00 4.18
208 209 6.129393 CGCAATATTACCACAAATTCTCTCG 58.871 40.000 0.00 0.00 0.00 4.04
209 210 7.016361 ACGCAATATTACCACAAATTCTCTC 57.984 36.000 0.00 0.00 0.00 3.20
210 211 7.391148 AACGCAATATTACCACAAATTCTCT 57.609 32.000 0.00 0.00 0.00 3.10
211 212 8.460831 AAAACGCAATATTACCACAAATTCTC 57.539 30.769 0.00 0.00 0.00 2.87
215 216 8.599774 GCAATAAAACGCAATATTACCACAAAT 58.400 29.630 0.00 0.00 0.00 2.32
216 217 7.598869 TGCAATAAAACGCAATATTACCACAAA 59.401 29.630 0.00 0.00 34.59 2.83
217 218 7.090808 TGCAATAAAACGCAATATTACCACAA 58.909 30.769 0.00 0.00 34.59 3.33
218 219 6.621613 TGCAATAAAACGCAATATTACCACA 58.378 32.000 0.00 0.00 34.59 4.17
219 220 7.513190 TTGCAATAAAACGCAATATTACCAC 57.487 32.000 0.00 0.00 42.93 4.16
228 229 5.530519 TGTTTTGTTGCAATAAAACGCAA 57.469 30.435 37.19 26.77 46.45 4.85
229 230 5.725110 ATGTTTTGTTGCAATAAAACGCA 57.275 30.435 37.19 28.87 46.45 5.24
230 231 6.872608 ACTATGTTTTGTTGCAATAAAACGC 58.127 32.000 37.19 25.73 46.45 4.84
231 232 8.324567 ACAACTATGTTTTGTTGCAATAAAACG 58.675 29.630 37.19 30.21 46.45 3.60
260 261 6.019640 CCGGTCTATTGCAGCAAAATTTATTG 60.020 38.462 12.97 0.00 0.00 1.90
261 262 6.042143 CCGGTCTATTGCAGCAAAATTTATT 58.958 36.000 12.97 0.00 0.00 1.40
262 263 5.359576 TCCGGTCTATTGCAGCAAAATTTAT 59.640 36.000 12.97 0.00 0.00 1.40
263 264 4.702612 TCCGGTCTATTGCAGCAAAATTTA 59.297 37.500 12.97 0.00 0.00 1.40
264 265 3.509575 TCCGGTCTATTGCAGCAAAATTT 59.490 39.130 12.97 0.00 0.00 1.82
265 266 3.088532 TCCGGTCTATTGCAGCAAAATT 58.911 40.909 12.97 0.00 0.00 1.82
266 267 2.722094 TCCGGTCTATTGCAGCAAAAT 58.278 42.857 12.97 0.00 0.00 1.82
267 268 2.192664 TCCGGTCTATTGCAGCAAAA 57.807 45.000 12.97 0.00 0.00 2.44
268 269 2.192664 TTCCGGTCTATTGCAGCAAA 57.807 45.000 12.97 0.91 0.00 3.68
269 270 2.288666 GATTCCGGTCTATTGCAGCAA 58.711 47.619 11.07 11.07 0.00 3.91
270 271 1.475034 GGATTCCGGTCTATTGCAGCA 60.475 52.381 0.00 0.00 0.00 4.41
271 272 1.202698 AGGATTCCGGTCTATTGCAGC 60.203 52.381 0.00 0.00 0.00 5.25
272 273 2.874701 CAAGGATTCCGGTCTATTGCAG 59.125 50.000 0.00 0.00 0.00 4.41
273 274 2.238646 ACAAGGATTCCGGTCTATTGCA 59.761 45.455 0.00 0.00 0.00 4.08
274 275 2.919228 ACAAGGATTCCGGTCTATTGC 58.081 47.619 0.00 0.00 0.00 3.56
275 276 5.470098 CCATTACAAGGATTCCGGTCTATTG 59.530 44.000 0.00 5.32 0.00 1.90
276 277 5.132144 ACCATTACAAGGATTCCGGTCTATT 59.868 40.000 0.00 0.00 0.00 1.73
277 278 4.658901 ACCATTACAAGGATTCCGGTCTAT 59.341 41.667 0.00 0.00 0.00 1.98
278 279 4.035112 ACCATTACAAGGATTCCGGTCTA 58.965 43.478 0.00 0.00 0.00 2.59
279 280 2.844348 ACCATTACAAGGATTCCGGTCT 59.156 45.455 0.00 0.00 0.00 3.85
280 281 3.277142 ACCATTACAAGGATTCCGGTC 57.723 47.619 0.00 0.00 0.00 4.79
281 282 3.617284 GAACCATTACAAGGATTCCGGT 58.383 45.455 0.00 7.95 0.00 5.28
282 283 2.949644 GGAACCATTACAAGGATTCCGG 59.050 50.000 0.00 0.00 31.49 5.14
299 300 3.692406 AGACGACAGCCGGGGAAC 61.692 66.667 2.18 0.00 43.93 3.62
300 301 3.691342 CAGACGACAGCCGGGGAA 61.691 66.667 2.18 0.00 43.93 3.97
305 306 4.731612 AGCAGCAGACGACAGCCG 62.732 66.667 0.00 0.00 45.44 5.52
306 307 2.492449 TACAGCAGCAGACGACAGCC 62.492 60.000 0.00 0.00 0.00 4.85
307 308 0.667487 TTACAGCAGCAGACGACAGC 60.667 55.000 0.00 0.00 0.00 4.40
308 309 2.001812 ATTACAGCAGCAGACGACAG 57.998 50.000 0.00 0.00 0.00 3.51
309 310 3.447742 CATATTACAGCAGCAGACGACA 58.552 45.455 0.00 0.00 0.00 4.35
310 311 2.219674 GCATATTACAGCAGCAGACGAC 59.780 50.000 0.00 0.00 0.00 4.34
311 312 2.101415 AGCATATTACAGCAGCAGACGA 59.899 45.455 0.00 0.00 0.00 4.20
312 313 2.474359 GAGCATATTACAGCAGCAGACG 59.526 50.000 0.00 0.00 0.00 4.18
313 314 2.805099 GGAGCATATTACAGCAGCAGAC 59.195 50.000 0.00 0.00 0.00 3.51
314 315 2.702478 AGGAGCATATTACAGCAGCAGA 59.298 45.455 0.00 0.00 0.00 4.26
315 316 2.806818 CAGGAGCATATTACAGCAGCAG 59.193 50.000 0.00 0.00 0.00 4.24
316 317 2.171237 ACAGGAGCATATTACAGCAGCA 59.829 45.455 0.00 0.00 0.00 4.41
317 318 2.843701 ACAGGAGCATATTACAGCAGC 58.156 47.619 0.00 0.00 0.00 5.25
318 319 5.824904 AAAACAGGAGCATATTACAGCAG 57.175 39.130 0.00 0.00 0.00 4.24
319 320 5.945784 AGAAAAACAGGAGCATATTACAGCA 59.054 36.000 0.00 0.00 0.00 4.41
320 321 6.442513 AGAAAAACAGGAGCATATTACAGC 57.557 37.500 0.00 0.00 0.00 4.40
321 322 8.514594 TGAAAGAAAAACAGGAGCATATTACAG 58.485 33.333 0.00 0.00 0.00 2.74
322 323 8.402798 TGAAAGAAAAACAGGAGCATATTACA 57.597 30.769 0.00 0.00 0.00 2.41
323 324 9.691362 TTTGAAAGAAAAACAGGAGCATATTAC 57.309 29.630 0.00 0.00 0.00 1.89
325 326 9.211485 CATTTGAAAGAAAAACAGGAGCATATT 57.789 29.630 0.00 0.00 0.00 1.28
326 327 8.370182 ACATTTGAAAGAAAAACAGGAGCATAT 58.630 29.630 0.00 0.00 0.00 1.78
327 328 7.725251 ACATTTGAAAGAAAAACAGGAGCATA 58.275 30.769 0.00 0.00 0.00 3.14
328 329 6.585416 ACATTTGAAAGAAAAACAGGAGCAT 58.415 32.000 0.00 0.00 0.00 3.79
329 330 5.976458 ACATTTGAAAGAAAAACAGGAGCA 58.024 33.333 0.00 0.00 0.00 4.26
330 331 6.313658 ACAACATTTGAAAGAAAAACAGGAGC 59.686 34.615 0.00 0.00 0.00 4.70
331 332 7.832503 ACAACATTTGAAAGAAAAACAGGAG 57.167 32.000 0.00 0.00 0.00 3.69
332 333 7.659390 ACAACAACATTTGAAAGAAAAACAGGA 59.341 29.630 0.00 0.00 0.00 3.86
333 334 7.805700 ACAACAACATTTGAAAGAAAAACAGG 58.194 30.769 0.00 0.00 0.00 4.00
334 335 9.662545 AAACAACAACATTTGAAAGAAAAACAG 57.337 25.926 0.00 0.00 0.00 3.16
340 341 9.823098 CAATGAAAACAACAACATTTGAAAGAA 57.177 25.926 0.00 0.00 31.85 2.52
341 342 9.212641 TCAATGAAAACAACAACATTTGAAAGA 57.787 25.926 0.00 0.00 31.85 2.52
342 343 9.991388 ATCAATGAAAACAACAACATTTGAAAG 57.009 25.926 0.00 0.00 31.85 2.62
344 345 9.770503 CAATCAATGAAAACAACAACATTTGAA 57.229 25.926 0.00 0.00 31.85 2.69
345 346 7.909121 GCAATCAATGAAAACAACAACATTTGA 59.091 29.630 0.00 0.00 31.85 2.69
346 347 7.911205 AGCAATCAATGAAAACAACAACATTTG 59.089 29.630 0.00 0.00 31.85 2.32
347 348 7.987649 AGCAATCAATGAAAACAACAACATTT 58.012 26.923 0.00 0.00 31.85 2.32
348 349 7.517101 CGAGCAATCAATGAAAACAACAACATT 60.517 33.333 0.00 0.00 34.01 2.71
349 350 6.074195 CGAGCAATCAATGAAAACAACAACAT 60.074 34.615 0.00 0.00 0.00 2.71
350 351 5.231779 CGAGCAATCAATGAAAACAACAACA 59.768 36.000 0.00 0.00 0.00 3.33
351 352 5.231991 ACGAGCAATCAATGAAAACAACAAC 59.768 36.000 0.00 0.00 0.00 3.32
352 353 5.231779 CACGAGCAATCAATGAAAACAACAA 59.768 36.000 0.00 0.00 0.00 2.83
353 354 4.739228 CACGAGCAATCAATGAAAACAACA 59.261 37.500 0.00 0.00 0.00 3.33
354 355 4.148696 CCACGAGCAATCAATGAAAACAAC 59.851 41.667 0.00 0.00 0.00 3.32
355 356 4.297510 CCACGAGCAATCAATGAAAACAA 58.702 39.130 0.00 0.00 0.00 2.83
356 357 3.305267 CCCACGAGCAATCAATGAAAACA 60.305 43.478 0.00 0.00 0.00 2.83
357 358 3.244976 CCCACGAGCAATCAATGAAAAC 58.755 45.455 0.00 0.00 0.00 2.43
358 359 2.230992 CCCCACGAGCAATCAATGAAAA 59.769 45.455 0.00 0.00 0.00 2.29
359 360 1.818060 CCCCACGAGCAATCAATGAAA 59.182 47.619 0.00 0.00 0.00 2.69
360 361 1.004161 TCCCCACGAGCAATCAATGAA 59.996 47.619 0.00 0.00 0.00 2.57
361 362 0.617935 TCCCCACGAGCAATCAATGA 59.382 50.000 0.00 0.00 0.00 2.57
362 363 0.734889 GTCCCCACGAGCAATCAATG 59.265 55.000 0.00 0.00 0.00 2.82
363 364 3.175133 GTCCCCACGAGCAATCAAT 57.825 52.632 0.00 0.00 0.00 2.57
364 365 4.713946 GTCCCCACGAGCAATCAA 57.286 55.556 0.00 0.00 0.00 2.57
394 395 1.159285 CCCGTCGGGTTTTCTAAACC 58.841 55.000 23.02 11.91 38.25 3.27
406 407 2.186125 GCCCTCTAAACCCGTCGG 59.814 66.667 3.60 3.60 0.00 4.79
407 408 2.202703 CGCCCTCTAAACCCGTCG 60.203 66.667 0.00 0.00 0.00 5.12
408 409 2.186125 CCGCCCTCTAAACCCGTC 59.814 66.667 0.00 0.00 0.00 4.79
409 410 3.396570 CCCGCCCTCTAAACCCGT 61.397 66.667 0.00 0.00 0.00 5.28
410 411 4.851179 GCCCGCCCTCTAAACCCG 62.851 72.222 0.00 0.00 0.00 5.28
411 412 4.851179 CGCCCGCCCTCTAAACCC 62.851 72.222 0.00 0.00 0.00 4.11
412 413 2.808181 TTTCGCCCGCCCTCTAAACC 62.808 60.000 0.00 0.00 0.00 3.27
413 414 0.956902 TTTTCGCCCGCCCTCTAAAC 60.957 55.000 0.00 0.00 0.00 2.01
414 415 0.034863 ATTTTCGCCCGCCCTCTAAA 60.035 50.000 0.00 0.00 0.00 1.85
415 416 0.034863 AATTTTCGCCCGCCCTCTAA 60.035 50.000 0.00 0.00 0.00 2.10
416 417 0.034863 AAATTTTCGCCCGCCCTCTA 60.035 50.000 0.00 0.00 0.00 2.43
417 418 0.034863 TAAATTTTCGCCCGCCCTCT 60.035 50.000 0.00 0.00 0.00 3.69
418 419 0.812549 TTAAATTTTCGCCCGCCCTC 59.187 50.000 0.00 0.00 0.00 4.30
419 420 0.528924 GTTAAATTTTCGCCCGCCCT 59.471 50.000 0.00 0.00 0.00 5.19
420 421 0.458889 GGTTAAATTTTCGCCCGCCC 60.459 55.000 0.00 0.00 0.00 6.13
421 422 0.458889 GGGTTAAATTTTCGCCCGCC 60.459 55.000 0.00 0.00 0.00 6.13
422 423 0.458889 GGGGTTAAATTTTCGCCCGC 60.459 55.000 14.32 7.13 40.18 6.13
423 424 0.179158 CGGGGTTAAATTTTCGCCCG 60.179 55.000 17.10 17.47 40.18 6.13
424 425 0.889994 ACGGGGTTAAATTTTCGCCC 59.110 50.000 17.10 15.21 38.61 6.13
425 426 1.985334 CACGGGGTTAAATTTTCGCC 58.015 50.000 14.64 14.64 0.00 5.54
426 427 1.336056 TGCACGGGGTTAAATTTTCGC 60.336 47.619 0.00 0.00 0.00 4.70
427 428 2.321263 GTGCACGGGGTTAAATTTTCG 58.679 47.619 0.00 0.00 0.00 3.46
428 429 2.287728 ACGTGCACGGGGTTAAATTTTC 60.288 45.455 39.21 0.00 44.95 2.29
429 430 1.682323 ACGTGCACGGGGTTAAATTTT 59.318 42.857 39.21 14.19 44.95 1.82
430 431 1.320507 ACGTGCACGGGGTTAAATTT 58.679 45.000 39.21 14.73 44.95 1.82
431 432 1.001158 CAACGTGCACGGGGTTAAATT 60.001 47.619 39.21 21.07 44.95 1.82
432 433 0.594110 CAACGTGCACGGGGTTAAAT 59.406 50.000 39.21 16.26 44.95 1.40
433 434 0.463295 TCAACGTGCACGGGGTTAAA 60.463 50.000 39.21 16.71 44.95 1.52
434 435 0.250381 ATCAACGTGCACGGGGTTAA 60.250 50.000 39.21 20.18 44.95 2.01
435 436 0.951525 CATCAACGTGCACGGGGTTA 60.952 55.000 39.21 21.54 44.95 2.85
436 437 2.112297 ATCAACGTGCACGGGGTT 59.888 55.556 39.21 23.96 44.95 4.11
437 438 2.668212 CATCAACGTGCACGGGGT 60.668 61.111 39.21 26.00 44.95 4.95
438 439 3.430862 CCATCAACGTGCACGGGG 61.431 66.667 39.21 29.99 44.95 5.73
439 440 3.430862 CCCATCAACGTGCACGGG 61.431 66.667 39.21 30.33 44.95 5.28
440 441 3.430862 CCCCATCAACGTGCACGG 61.431 66.667 39.21 24.50 44.95 4.94
441 442 2.358125 TCCCCATCAACGTGCACG 60.358 61.111 35.99 35.99 46.33 5.34
442 443 2.677003 CGTCCCCATCAACGTGCAC 61.677 63.158 6.82 6.82 34.30 4.57
443 444 2.358125 CGTCCCCATCAACGTGCA 60.358 61.111 0.00 0.00 34.30 4.57
444 445 3.124921 CCGTCCCCATCAACGTGC 61.125 66.667 0.00 0.00 37.19 5.34
445 446 2.435938 CCCGTCCCCATCAACGTG 60.436 66.667 0.00 0.00 37.19 4.49
446 447 3.712907 CCCCGTCCCCATCAACGT 61.713 66.667 0.00 0.00 37.19 3.99
447 448 3.395702 TCCCCGTCCCCATCAACG 61.396 66.667 0.00 0.00 38.58 4.10
448 449 2.271173 GTCCCCGTCCCCATCAAC 59.729 66.667 0.00 0.00 0.00 3.18
449 450 3.395702 CGTCCCCGTCCCCATCAA 61.396 66.667 0.00 0.00 0.00 2.57
455 456 4.710167 CAAACCCGTCCCCGTCCC 62.710 72.222 0.00 0.00 0.00 4.46
457 458 2.248086 ATAGCAAACCCGTCCCCGTC 62.248 60.000 0.00 0.00 0.00 4.79
458 459 1.844544 AATAGCAAACCCGTCCCCGT 61.845 55.000 0.00 0.00 0.00 5.28
459 460 0.678684 AAATAGCAAACCCGTCCCCG 60.679 55.000 0.00 0.00 0.00 5.73
460 461 1.475280 GAAAATAGCAAACCCGTCCCC 59.525 52.381 0.00 0.00 0.00 4.81
461 462 2.422479 GAGAAAATAGCAAACCCGTCCC 59.578 50.000 0.00 0.00 0.00 4.46
462 463 2.095372 CGAGAAAATAGCAAACCCGTCC 59.905 50.000 0.00 0.00 0.00 4.79
463 464 2.740447 ACGAGAAAATAGCAAACCCGTC 59.260 45.455 0.00 0.00 0.00 4.79
464 465 2.482721 CACGAGAAAATAGCAAACCCGT 59.517 45.455 0.00 0.00 0.00 5.28
465 466 2.159572 CCACGAGAAAATAGCAAACCCG 60.160 50.000 0.00 0.00 0.00 5.28
466 467 2.163613 CCCACGAGAAAATAGCAAACCC 59.836 50.000 0.00 0.00 0.00 4.11
467 468 3.078837 TCCCACGAGAAAATAGCAAACC 58.921 45.455 0.00 0.00 0.00 3.27
468 469 4.759516 TTCCCACGAGAAAATAGCAAAC 57.240 40.909 0.00 0.00 0.00 2.93
469 470 4.157656 CCATTCCCACGAGAAAATAGCAAA 59.842 41.667 0.00 0.00 0.00 3.68
470 471 3.694072 CCATTCCCACGAGAAAATAGCAA 59.306 43.478 0.00 0.00 0.00 3.91
471 472 3.278574 CCATTCCCACGAGAAAATAGCA 58.721 45.455 0.00 0.00 0.00 3.49
472 473 2.618709 CCCATTCCCACGAGAAAATAGC 59.381 50.000 0.00 0.00 0.00 2.97
473 474 3.886123 ACCCATTCCCACGAGAAAATAG 58.114 45.455 0.00 0.00 0.00 1.73
474 475 4.310022 AACCCATTCCCACGAGAAAATA 57.690 40.909 0.00 0.00 0.00 1.40
475 476 2.899303 ACCCATTCCCACGAGAAAAT 57.101 45.000 0.00 0.00 0.00 1.82
476 477 2.625790 CAAACCCATTCCCACGAGAAAA 59.374 45.455 0.00 0.00 0.00 2.29
477 478 2.235016 CAAACCCATTCCCACGAGAAA 58.765 47.619 0.00 0.00 0.00 2.52
478 479 1.546773 CCAAACCCATTCCCACGAGAA 60.547 52.381 0.00 0.00 0.00 2.87
479 480 0.037590 CCAAACCCATTCCCACGAGA 59.962 55.000 0.00 0.00 0.00 4.04
480 481 0.965363 CCCAAACCCATTCCCACGAG 60.965 60.000 0.00 0.00 0.00 4.18
481 482 1.075836 CCCAAACCCATTCCCACGA 59.924 57.895 0.00 0.00 0.00 4.35
482 483 2.645192 GCCCAAACCCATTCCCACG 61.645 63.158 0.00 0.00 0.00 4.94
483 484 1.124477 TTGCCCAAACCCATTCCCAC 61.124 55.000 0.00 0.00 0.00 4.61
484 485 0.835543 CTTGCCCAAACCCATTCCCA 60.836 55.000 0.00 0.00 0.00 4.37
485 486 1.982430 CTTGCCCAAACCCATTCCC 59.018 57.895 0.00 0.00 0.00 3.97
486 487 1.296392 GCTTGCCCAAACCCATTCC 59.704 57.895 0.00 0.00 0.00 3.01
487 488 0.396060 TTGCTTGCCCAAACCCATTC 59.604 50.000 0.00 0.00 0.00 2.67
488 489 0.842635 TTTGCTTGCCCAAACCCATT 59.157 45.000 0.00 0.00 30.28 3.16
489 490 0.842635 TTTTGCTTGCCCAAACCCAT 59.157 45.000 0.00 0.00 34.68 4.00
490 491 0.107459 GTTTTGCTTGCCCAAACCCA 60.107 50.000 6.35 0.00 34.68 4.51
491 492 0.817634 GGTTTTGCTTGCCCAAACCC 60.818 55.000 18.39 2.72 34.68 4.11
492 493 0.180171 AGGTTTTGCTTGCCCAAACC 59.820 50.000 20.20 20.20 34.68 3.27
493 494 1.298602 CAGGTTTTGCTTGCCCAAAC 58.701 50.000 8.24 8.24 34.68 2.93
494 495 0.179936 CCAGGTTTTGCTTGCCCAAA 59.820 50.000 0.00 0.00 33.21 3.28
495 496 0.980231 ACCAGGTTTTGCTTGCCCAA 60.980 50.000 0.00 0.00 0.00 4.12
496 497 1.382420 ACCAGGTTTTGCTTGCCCA 60.382 52.632 0.00 0.00 0.00 5.36
497 498 1.069596 CACCAGGTTTTGCTTGCCC 59.930 57.895 0.00 0.00 0.00 5.36
498 499 1.069596 CCACCAGGTTTTGCTTGCC 59.930 57.895 0.00 0.00 0.00 4.52
499 500 0.681175 ATCCACCAGGTTTTGCTTGC 59.319 50.000 0.00 0.00 35.89 4.01
500 501 3.392882 GAAATCCACCAGGTTTTGCTTG 58.607 45.455 0.00 0.00 37.03 4.01
501 502 2.035832 CGAAATCCACCAGGTTTTGCTT 59.964 45.455 0.00 0.00 37.03 3.91
502 503 1.613437 CGAAATCCACCAGGTTTTGCT 59.387 47.619 0.00 0.00 37.03 3.91
503 504 1.339929 ACGAAATCCACCAGGTTTTGC 59.660 47.619 0.00 0.00 37.03 3.68
504 505 3.282831 GACGAAATCCACCAGGTTTTG 57.717 47.619 0.00 0.00 37.03 2.44
522 523 0.608035 TTCAAGATGGCAACGGGGAC 60.608 55.000 0.00 0.00 42.51 4.46
523 524 0.331278 ATTCAAGATGGCAACGGGGA 59.669 50.000 0.00 0.00 42.51 4.81
524 525 0.740737 GATTCAAGATGGCAACGGGG 59.259 55.000 0.00 0.00 42.51 5.73
525 526 0.740737 GGATTCAAGATGGCAACGGG 59.259 55.000 0.00 0.00 42.51 5.28
526 527 0.378257 CGGATTCAAGATGGCAACGG 59.622 55.000 0.00 0.00 42.51 4.44
527 528 1.086696 ACGGATTCAAGATGGCAACG 58.913 50.000 0.00 0.00 42.51 4.10
528 529 3.006940 TGTACGGATTCAAGATGGCAAC 58.993 45.455 0.00 0.00 0.00 4.17
529 530 3.270027 CTGTACGGATTCAAGATGGCAA 58.730 45.455 0.00 0.00 0.00 4.52
530 531 2.236146 ACTGTACGGATTCAAGATGGCA 59.764 45.455 9.17 0.00 0.00 4.92
531 532 2.866762 GACTGTACGGATTCAAGATGGC 59.133 50.000 9.17 0.00 0.00 4.40
532 533 4.392921 AGACTGTACGGATTCAAGATGG 57.607 45.455 9.17 0.00 0.00 3.51
533 534 9.698309 ATAAATAGACTGTACGGATTCAAGATG 57.302 33.333 9.17 0.00 0.00 2.90
534 535 9.915629 GATAAATAGACTGTACGGATTCAAGAT 57.084 33.333 9.17 0.00 0.00 2.40
535 536 8.358148 GGATAAATAGACTGTACGGATTCAAGA 58.642 37.037 9.17 0.00 0.00 3.02
536 537 7.599245 GGGATAAATAGACTGTACGGATTCAAG 59.401 40.741 9.17 0.00 0.00 3.02
537 538 7.289317 AGGGATAAATAGACTGTACGGATTCAA 59.711 37.037 9.17 0.00 0.00 2.69
538 539 6.781014 AGGGATAAATAGACTGTACGGATTCA 59.219 38.462 9.17 0.00 0.00 2.57
539 540 7.091443 CAGGGATAAATAGACTGTACGGATTC 58.909 42.308 9.17 0.00 0.00 2.52
540 541 6.518537 GCAGGGATAAATAGACTGTACGGATT 60.519 42.308 9.17 0.00 0.00 3.01
541 542 5.047235 GCAGGGATAAATAGACTGTACGGAT 60.047 44.000 9.17 0.00 0.00 4.18
542 543 4.280174 GCAGGGATAAATAGACTGTACGGA 59.720 45.833 9.17 0.00 0.00 4.69
543 544 4.281182 AGCAGGGATAAATAGACTGTACGG 59.719 45.833 0.00 0.00 0.00 4.02
544 545 5.455056 AGCAGGGATAAATAGACTGTACG 57.545 43.478 0.00 0.00 0.00 3.67
545 546 9.780186 ATAAAAGCAGGGATAAATAGACTGTAC 57.220 33.333 0.00 0.00 0.00 2.90
547 548 9.700831 AAATAAAAGCAGGGATAAATAGACTGT 57.299 29.630 0.00 0.00 0.00 3.55
548 549 9.956720 CAAATAAAAGCAGGGATAAATAGACTG 57.043 33.333 0.00 0.00 0.00 3.51
549 550 9.920946 TCAAATAAAAGCAGGGATAAATAGACT 57.079 29.630 0.00 0.00 0.00 3.24
556 557 9.364989 CGATTTTTCAAATAAAAGCAGGGATAA 57.635 29.630 0.00 0.00 34.07 1.75
557 558 8.527810 ACGATTTTTCAAATAAAAGCAGGGATA 58.472 29.630 0.00 0.00 34.07 2.59
558 559 7.386059 ACGATTTTTCAAATAAAAGCAGGGAT 58.614 30.769 0.00 0.00 34.07 3.85
559 560 6.754193 ACGATTTTTCAAATAAAAGCAGGGA 58.246 32.000 0.00 0.00 34.07 4.20
560 561 7.420184 AACGATTTTTCAAATAAAAGCAGGG 57.580 32.000 0.00 0.00 34.07 4.45
561 562 8.764287 AGAAACGATTTTTCAAATAAAAGCAGG 58.236 29.630 0.00 0.00 34.07 4.85
595 596 0.475044 CGAGCCTCTCCCCTACTACT 59.525 60.000 0.00 0.00 0.00 2.57
596 597 0.537828 CCGAGCCTCTCCCCTACTAC 60.538 65.000 0.00 0.00 0.00 2.73
597 598 1.844839 CCGAGCCTCTCCCCTACTA 59.155 63.158 0.00 0.00 0.00 1.82
598 599 2.604152 CCGAGCCTCTCCCCTACT 59.396 66.667 0.00 0.00 0.00 2.57
599 600 3.228017 GCCGAGCCTCTCCCCTAC 61.228 72.222 0.00 0.00 0.00 3.18
600 601 3.751018 TGCCGAGCCTCTCCCCTA 61.751 66.667 0.00 0.00 0.00 3.53
613 614 0.871722 TTCTTTTGTGATCCGTGCCG 59.128 50.000 0.00 0.00 0.00 5.69
629 630 3.181495 CGTAGCTCGGAAAGTCAGATTCT 60.181 47.826 0.00 0.00 35.71 2.40
650 651 3.924073 TCCGTTCAATATGTGTCAGTTCG 59.076 43.478 0.00 0.00 0.00 3.95
758 773 9.620660 CGTGTGTGTGTGTGTGTATATATATAT 57.379 33.333 10.10 10.10 0.00 0.86
759 774 8.077386 CCGTGTGTGTGTGTGTGTATATATATA 58.923 37.037 0.00 0.00 0.00 0.86
760 775 6.921307 CCGTGTGTGTGTGTGTGTATATATAT 59.079 38.462 0.00 0.00 0.00 0.86
761 776 6.095160 TCCGTGTGTGTGTGTGTGTATATATA 59.905 38.462 0.00 0.00 0.00 0.86
762 777 5.105675 TCCGTGTGTGTGTGTGTGTATATAT 60.106 40.000 0.00 0.00 0.00 0.86
763 778 4.217983 TCCGTGTGTGTGTGTGTGTATATA 59.782 41.667 0.00 0.00 0.00 0.86
764 779 3.006003 TCCGTGTGTGTGTGTGTGTATAT 59.994 43.478 0.00 0.00 0.00 0.86
765 780 2.361438 TCCGTGTGTGTGTGTGTGTATA 59.639 45.455 0.00 0.00 0.00 1.47
766 781 1.137282 TCCGTGTGTGTGTGTGTGTAT 59.863 47.619 0.00 0.00 0.00 2.29
767 782 0.531200 TCCGTGTGTGTGTGTGTGTA 59.469 50.000 0.00 0.00 0.00 2.90
768 783 1.017177 GTCCGTGTGTGTGTGTGTGT 61.017 55.000 0.00 0.00 0.00 3.72
769 784 1.016653 TGTCCGTGTGTGTGTGTGTG 61.017 55.000 0.00 0.00 0.00 3.82
770 785 1.017177 GTGTCCGTGTGTGTGTGTGT 61.017 55.000 0.00 0.00 0.00 3.72
771 786 1.713246 GTGTCCGTGTGTGTGTGTG 59.287 57.895 0.00 0.00 0.00 3.82
772 787 1.807981 CGTGTCCGTGTGTGTGTGT 60.808 57.895 0.00 0.00 0.00 3.72
773 788 2.521771 CCGTGTCCGTGTGTGTGTG 61.522 63.158 0.00 0.00 0.00 3.82
774 789 2.202824 CCGTGTCCGTGTGTGTGT 60.203 61.111 0.00 0.00 0.00 3.72
775 790 1.949133 CTCCGTGTCCGTGTGTGTG 60.949 63.158 0.00 0.00 0.00 3.82
776 791 1.952102 AACTCCGTGTCCGTGTGTGT 61.952 55.000 0.00 0.00 0.00 3.72
777 792 1.213094 GAACTCCGTGTCCGTGTGTG 61.213 60.000 0.00 0.00 0.00 3.82
778 793 1.066918 GAACTCCGTGTCCGTGTGT 59.933 57.895 0.00 0.00 0.00 3.72
779 794 1.663702 GGAACTCCGTGTCCGTGTG 60.664 63.158 0.00 0.00 0.00 3.82
780 795 1.678598 TTGGAACTCCGTGTCCGTGT 61.679 55.000 0.00 0.00 39.43 4.49
781 796 0.320421 ATTGGAACTCCGTGTCCGTG 60.320 55.000 0.00 0.00 39.43 4.94
819 834 6.146347 GGATCGAGATTGGAAGTTTGCTATAC 59.854 42.308 0.00 0.00 0.00 1.47
829 848 1.542108 GCAGGGGATCGAGATTGGAAG 60.542 57.143 0.00 0.00 0.00 3.46
881 900 2.126071 GAGCTGCTGCGGACGTAA 60.126 61.111 13.72 0.00 45.42 3.18
882 901 4.129737 GGAGCTGCTGCGGACGTA 62.130 66.667 13.72 0.00 45.42 3.57
913 942 3.793144 CCTGGCACGCGAGAAAGC 61.793 66.667 15.93 8.44 0.00 3.51
914 943 3.793144 GCCTGGCACGCGAGAAAG 61.793 66.667 15.93 5.99 0.00 2.62
915 944 3.825160 AAGCCTGGCACGCGAGAAA 62.825 57.895 22.65 0.00 0.00 2.52
916 945 4.314440 AAGCCTGGCACGCGAGAA 62.314 61.111 22.65 0.00 0.00 2.87
917 946 4.742201 GAAGCCTGGCACGCGAGA 62.742 66.667 22.65 0.00 0.00 4.04
964 1025 1.194772 GCCGGAGTTTTCGTCTTCTTG 59.805 52.381 5.05 0.00 0.00 3.02
969 1030 2.048503 CGGCCGGAGTTTTCGTCT 60.049 61.111 20.10 0.00 0.00 4.18
1171 1232 2.810852 GAGACACTTTGAAGAAGCCCAG 59.189 50.000 0.00 0.00 0.00 4.45
1290 1753 1.913762 CGGAGGAGGTTCCAGGTGT 60.914 63.158 0.00 0.00 39.61 4.16
1295 1758 2.221299 CCCAACGGAGGAGGTTCCA 61.221 63.158 0.00 0.00 39.61 3.53
1296 1759 1.775934 AACCCAACGGAGGAGGTTCC 61.776 60.000 0.00 0.00 38.17 3.62
1320 1783 4.283722 GGAGTGAAGACAAGAGACCCTTTA 59.716 45.833 0.00 0.00 31.42 1.85
1377 1847 3.404438 AAGCGTTGGGCCGGGATA 61.404 61.111 2.18 0.00 45.17 2.59
1470 1940 1.723542 CACACGAAGATCTCACACAGC 59.276 52.381 0.00 0.00 0.00 4.40
1480 1950 2.221918 GGGGATCCCACACGAAGAT 58.778 57.895 32.07 0.00 44.65 2.40
1587 2063 2.609491 CCCGTCTTGATCGTCAGAACAA 60.609 50.000 0.00 0.00 36.91 2.83
1591 2067 1.248101 TGCCCGTCTTGATCGTCAGA 61.248 55.000 0.00 0.00 0.00 3.27
1612 2088 2.892215 TCAAGAAGCAATCATGGTGCAA 59.108 40.909 20.05 0.00 44.74 4.08
1737 2213 4.272991 AGAACCATATCTGTAGTCGACGTC 59.727 45.833 10.46 5.18 0.00 4.34
1962 2446 1.432514 CCTCCGACATATGAATGCCG 58.567 55.000 10.38 4.74 38.55 5.69
1976 2460 2.505407 TCCCATATATGAATGCCCTCCG 59.495 50.000 14.54 0.00 0.00 4.63
2069 2571 3.005050 TGCATTTCTGAAGGTGCAAGAAG 59.995 43.478 22.09 0.00 43.83 2.85
2077 2579 3.009916 ACCATCTCTGCATTTCTGAAGGT 59.990 43.478 0.00 0.00 0.00 3.50
2120 2622 6.262193 TGTACGTAGACAGAATCATCACAA 57.738 37.500 0.00 0.00 0.00 3.33
2321 4403 7.445096 AGACAACTAATCACATCACATGAACAA 59.555 33.333 0.00 0.00 0.00 2.83
2432 4514 5.734220 GCAAGCAGACAGATTGAGTGAAAAA 60.734 40.000 0.00 0.00 46.32 1.94
2545 4641 8.687824 AATTACTTGTTATTGCTCGAATTTGG 57.312 30.769 0.00 0.00 0.00 3.28
2581 4680 6.417930 GCACAAATTGGAAAAACTCAGTCTAC 59.582 38.462 0.00 0.00 0.00 2.59
2582 4681 6.096141 TGCACAAATTGGAAAAACTCAGTCTA 59.904 34.615 0.00 0.00 0.00 2.59
2583 4682 5.105392 TGCACAAATTGGAAAAACTCAGTCT 60.105 36.000 0.00 0.00 0.00 3.24
2652 4759 4.083855 ACATTCATACAGAACACAACTGCG 60.084 41.667 0.00 0.00 39.49 5.18
2728 4983 5.644644 GCTGTCAGGTGGAAAAGATAATTG 58.355 41.667 1.14 0.00 0.00 2.32
2845 5253 5.014123 CCAACTCCCCTGCCTATATCAAATA 59.986 44.000 0.00 0.00 0.00 1.40
3481 9411 1.136774 CCTCGCTTCGTCGTCATCA 59.863 57.895 0.00 0.00 0.00 3.07
3482 9412 1.586564 CCCTCGCTTCGTCGTCATC 60.587 63.158 0.00 0.00 0.00 2.92
3484 9414 2.079020 AAACCCTCGCTTCGTCGTCA 62.079 55.000 0.00 0.00 0.00 4.35
3485 9415 1.342796 GAAACCCTCGCTTCGTCGTC 61.343 60.000 0.00 0.00 0.00 4.20
3490 9420 2.048503 ACCGAAACCCTCGCTTCG 60.049 61.111 0.00 0.00 46.71 3.79
3508 9438 1.067060 GGCAGAAACCACACCAAACTC 59.933 52.381 0.00 0.00 0.00 3.01
3536 9466 2.592861 GTCGCCTCCCATGATGGC 60.593 66.667 5.79 11.78 42.94 4.40
3561 9491 1.638467 CTCTGCGTCGCCTATTTGC 59.362 57.895 15.88 0.00 0.00 3.68
3580 9510 2.861147 AGAGTGGGAGCAAGGTTTAC 57.139 50.000 0.00 0.00 0.00 2.01
3587 9517 2.592993 CGGGGAAGAGTGGGAGCAA 61.593 63.158 0.00 0.00 0.00 3.91
3588 9518 3.003173 CGGGGAAGAGTGGGAGCA 61.003 66.667 0.00 0.00 0.00 4.26
3625 9555 1.509463 CATCCCTCGAAACGTCCGA 59.491 57.895 11.59 11.59 34.61 4.55
3630 9560 4.110493 GAGCCATCCCTCGAAACG 57.890 61.111 0.00 0.00 0.00 3.60
3647 9577 4.007940 CACGCCACCACGAAACCG 62.008 66.667 0.00 0.00 36.70 4.44
3680 9610 2.032681 GGTCGCTATCATGCCCCC 59.967 66.667 0.00 0.00 0.00 5.40
3709 9639 3.386867 CTCGATTTGGCTGCCGCAC 62.387 63.158 14.98 4.66 38.10 5.34
3710 9640 3.126879 CTCGATTTGGCTGCCGCA 61.127 61.111 14.98 2.75 38.10 5.69
3725 9655 3.521524 AATTGTCGAAACGCTTGTCTC 57.478 42.857 0.00 0.00 0.00 3.36
3758 9688 2.037677 AAACCACCCCACCCTCCT 60.038 61.111 0.00 0.00 0.00 3.69
3798 9728 0.385598 GCGAAGAAAGGAACAACGGC 60.386 55.000 0.00 0.00 0.00 5.68
3846 9776 2.111043 CACTGTCGTGCCCCTTGT 59.889 61.111 0.00 0.00 33.82 3.16
3848 9778 4.643387 GCCACTGTCGTGCCCCTT 62.643 66.667 0.00 0.00 39.86 3.95
3860 9790 0.181824 AGTAAACAACCCACGCCACT 59.818 50.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.