Multiple sequence alignment - TraesCS6D01G041500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G041500 chr6D 100.000 3211 0 0 1 3211 17020855 17017645 0 5930
1 TraesCS6D01G041500 chr6D 95.197 458 22 0 2754 3211 17000816 17000359 0 725
2 TraesCS6D01G041500 chr6D 94.760 458 23 1 2754 3211 371283587 371284043 0 712
3 TraesCS6D01G041500 chr7D 92.199 2769 130 32 3 2741 107539388 107536676 0 3838
4 TraesCS6D01G041500 chr7D 98.501 2068 15 6 1 2058 19950516 19948455 0 3633
5 TraesCS6D01G041500 chrUn 92.701 2658 134 22 113 2747 308704344 308701724 0 3779
6 TraesCS6D01G041500 chrUn 87.130 2362 202 44 411 2747 314360213 314357929 0 2584
7 TraesCS6D01G041500 chrUn 86.884 2272 192 48 411 2654 316057035 316054842 0 2447
8 TraesCS6D01G041500 chrUn 86.523 2048 175 42 411 2433 360969796 360967825 0 2159
9 TraesCS6D01G041500 chrUn 88.621 870 69 10 3 860 324330205 324329354 0 1031
10 TraesCS6D01G041500 chrUn 88.621 870 69 10 3 860 324333359 324332508 0 1031
11 TraesCS6D01G041500 chrUn 89.560 795 61 8 78 860 465678957 465679741 0 989
12 TraesCS6D01G041500 chr7A 92.989 2111 112 15 3 2092 53680195 53682290 0 3046
13 TraesCS6D01G041500 chr7A 92.834 614 39 3 2132 2741 53682284 53682896 0 885
14 TraesCS6D01G041500 chr4B 91.798 2024 131 16 745 2747 624621794 624619785 0 2785
15 TraesCS6D01G041500 chr4B 91.640 1842 102 17 3 1817 639279002 639280818 0 2501
16 TraesCS6D01G041500 chr4B 91.896 691 38 8 1 674 624622483 624621794 0 950
17 TraesCS6D01G041500 chr2B 92.458 1843 85 23 3 1820 90560049 90558236 0 2584
18 TraesCS6D01G041500 chr3B 92.354 1844 96 17 3 1820 9347402 9345578 0 2582
19 TraesCS6D01G041500 chr1A 90.260 1499 114 5 1264 2741 510897239 510898726 0 1930
20 TraesCS6D01G041500 chr4A 92.441 1151 81 4 1597 2741 518817169 518818319 0 1639
21 TraesCS6D01G041500 chr2D 92.308 1157 84 4 1595 2747 31310821 31309666 0 1639
22 TraesCS6D01G041500 chr2D 84.509 1233 155 23 820 2034 615996038 615997252 0 1186
23 TraesCS6D01G041500 chr2D 91.739 690 38 5 1 674 31313221 31312535 0 941
24 TraesCS6D01G041500 chr2D 94.978 458 23 0 2754 3211 435173231 435173688 0 719
25 TraesCS6D01G041500 chr2D 94.541 458 25 0 2754 3211 147422266 147422723 0 708
26 TraesCS6D01G041500 chr2D 94.541 458 25 0 2754 3211 435194073 435194530 0 708
27 TraesCS6D01G041500 chr5A 92.557 1142 76 6 1608 2741 119248431 119249571 0 1629
28 TraesCS6D01G041500 chr5A 92.837 1089 71 4 1660 2747 502483824 502482742 0 1572
29 TraesCS6D01G041500 chr5A 94.434 539 29 1 3 541 502485356 502484819 0 828
30 TraesCS6D01G041500 chr1B 87.846 1193 129 11 1557 2741 7475945 7477129 0 1386
31 TraesCS6D01G041500 chr1B 87.762 1193 130 11 1557 2741 6229990 6231174 0 1380
32 TraesCS6D01G041500 chr5D 94.978 458 23 0 2754 3211 469614788 469614331 0 719
33 TraesCS6D01G041500 chr5D 94.978 458 22 1 2754 3211 545200385 545199929 0 717
34 TraesCS6D01G041500 chr5D 94.760 458 24 0 2754 3211 327151566 327152023 0 713
35 TraesCS6D01G041500 chr1D 94.541 458 25 0 2754 3211 493592008 493591551 0 708


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G041500 chr6D 17017645 17020855 3210 True 5930.0 5930 100.0000 1 3211 1 chr6D.!!$R2 3210
1 TraesCS6D01G041500 chr7D 107536676 107539388 2712 True 3838.0 3838 92.1990 3 2741 1 chr7D.!!$R2 2738
2 TraesCS6D01G041500 chr7D 19948455 19950516 2061 True 3633.0 3633 98.5010 1 2058 1 chr7D.!!$R1 2057
3 TraesCS6D01G041500 chrUn 308701724 308704344 2620 True 3779.0 3779 92.7010 113 2747 1 chrUn.!!$R1 2634
4 TraesCS6D01G041500 chrUn 314357929 314360213 2284 True 2584.0 2584 87.1300 411 2747 1 chrUn.!!$R2 2336
5 TraesCS6D01G041500 chrUn 316054842 316057035 2193 True 2447.0 2447 86.8840 411 2654 1 chrUn.!!$R3 2243
6 TraesCS6D01G041500 chrUn 360967825 360969796 1971 True 2159.0 2159 86.5230 411 2433 1 chrUn.!!$R4 2022
7 TraesCS6D01G041500 chrUn 324329354 324333359 4005 True 1031.0 1031 88.6210 3 860 2 chrUn.!!$R5 857
8 TraesCS6D01G041500 chrUn 465678957 465679741 784 False 989.0 989 89.5600 78 860 1 chrUn.!!$F1 782
9 TraesCS6D01G041500 chr7A 53680195 53682896 2701 False 1965.5 3046 92.9115 3 2741 2 chr7A.!!$F1 2738
10 TraesCS6D01G041500 chr4B 639279002 639280818 1816 False 2501.0 2501 91.6400 3 1817 1 chr4B.!!$F1 1814
11 TraesCS6D01G041500 chr4B 624619785 624622483 2698 True 1867.5 2785 91.8470 1 2747 2 chr4B.!!$R1 2746
12 TraesCS6D01G041500 chr2B 90558236 90560049 1813 True 2584.0 2584 92.4580 3 1820 1 chr2B.!!$R1 1817
13 TraesCS6D01G041500 chr3B 9345578 9347402 1824 True 2582.0 2582 92.3540 3 1820 1 chr3B.!!$R1 1817
14 TraesCS6D01G041500 chr1A 510897239 510898726 1487 False 1930.0 1930 90.2600 1264 2741 1 chr1A.!!$F1 1477
15 TraesCS6D01G041500 chr4A 518817169 518818319 1150 False 1639.0 1639 92.4410 1597 2741 1 chr4A.!!$F1 1144
16 TraesCS6D01G041500 chr2D 31309666 31313221 3555 True 1290.0 1639 92.0235 1 2747 2 chr2D.!!$R1 2746
17 TraesCS6D01G041500 chr2D 615996038 615997252 1214 False 1186.0 1186 84.5090 820 2034 1 chr2D.!!$F4 1214
18 TraesCS6D01G041500 chr5A 119248431 119249571 1140 False 1629.0 1629 92.5570 1608 2741 1 chr5A.!!$F1 1133
19 TraesCS6D01G041500 chr5A 502482742 502485356 2614 True 1200.0 1572 93.6355 3 2747 2 chr5A.!!$R1 2744
20 TraesCS6D01G041500 chr1B 7475945 7477129 1184 False 1386.0 1386 87.8460 1557 2741 1 chr1B.!!$F2 1184
21 TraesCS6D01G041500 chr1B 6229990 6231174 1184 False 1380.0 1380 87.7620 1557 2741 1 chr1B.!!$F1 1184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 927 2.675348 GCTCGGTGGAAGAGAAAATGAG 59.325 50.0 0.0 0.0 37.93 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2826 5746 0.391597 GTCCAGTTTCAGTCACCGGA 59.608 55.0 9.46 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
419 449 7.315142 TGTAAGATTTGTGATCTGGAATTTGC 58.685 34.615 0.00 0.00 0.00 3.68
757 828 6.665992 AAAGATATGTCGAGGGCTTGTATA 57.334 37.500 0.00 0.00 0.00 1.47
849 927 2.675348 GCTCGGTGGAAGAGAAAATGAG 59.325 50.000 0.00 0.00 37.93 2.90
1024 1972 6.861065 TGTTGGTAAAGTCTGAAGCTTAAG 57.139 37.500 4.18 4.18 0.00 1.85
2210 4402 9.619316 CGGTGTTATTTTGATTGTCATTTCTAA 57.381 29.630 0.00 0.00 0.00 2.10
2221 4983 7.835682 TGATTGTCATTTCTAATTGGAGGATGT 59.164 33.333 13.28 0.40 0.00 3.06
2236 4998 5.428457 TGGAGGATGTTTTGGCTTAGAGATA 59.572 40.000 0.00 0.00 0.00 1.98
2318 5094 9.868277 TGTATATAATGTGATGCGATGTGAATA 57.132 29.630 0.00 0.00 0.00 1.75
2654 5574 1.945394 GCCGTCACGAGGAGTAATCTA 59.055 52.381 0.00 0.00 0.00 1.98
2741 5661 4.438145 CGTTACTAGCTGTTCGATGACATC 59.562 45.833 5.28 5.28 0.00 3.06
2743 5663 4.300189 ACTAGCTGTTCGATGACATCTC 57.700 45.455 13.45 4.88 29.64 2.75
2747 5667 3.056250 AGCTGTTCGATGACATCTCTTGT 60.056 43.478 13.45 0.00 42.79 3.16
2748 5668 4.158579 AGCTGTTCGATGACATCTCTTGTA 59.841 41.667 13.45 0.00 39.18 2.41
2749 5669 4.502282 GCTGTTCGATGACATCTCTTGTAG 59.498 45.833 13.45 5.65 39.18 2.74
2751 5671 5.402398 TGTTCGATGACATCTCTTGTAGTG 58.598 41.667 13.45 0.00 39.18 2.74
2752 5672 4.033990 TCGATGACATCTCTTGTAGTGC 57.966 45.455 13.45 0.00 39.18 4.40
2753 5673 2.786027 CGATGACATCTCTTGTAGTGCG 59.214 50.000 13.45 0.00 39.18 5.34
2754 5674 2.654749 TGACATCTCTTGTAGTGCGG 57.345 50.000 0.00 0.00 39.18 5.69
2756 5676 2.263077 GACATCTCTTGTAGTGCGGTG 58.737 52.381 0.00 0.00 39.18 4.94
2757 5677 1.066858 ACATCTCTTGTAGTGCGGTGG 60.067 52.381 0.00 0.00 36.57 4.61
2758 5678 0.108138 ATCTCTTGTAGTGCGGTGGC 60.108 55.000 0.00 0.00 40.52 5.01
2759 5679 1.741770 CTCTTGTAGTGCGGTGGCC 60.742 63.158 0.00 0.00 38.85 5.36
2760 5680 2.746277 CTTGTAGTGCGGTGGCCC 60.746 66.667 0.00 0.00 38.85 5.80
2761 5681 4.338710 TTGTAGTGCGGTGGCCCC 62.339 66.667 0.00 0.00 38.85 5.80
2785 5705 2.446994 TGGACCACCGGACACCTT 60.447 61.111 9.46 0.00 39.42 3.50
2786 5706 2.073716 TGGACCACCGGACACCTTT 61.074 57.895 9.46 0.00 39.42 3.11
2787 5707 1.302271 GGACCACCGGACACCTTTC 60.302 63.158 9.46 0.00 0.00 2.62
2788 5708 1.448497 GACCACCGGACACCTTTCA 59.552 57.895 9.46 0.00 0.00 2.69
2790 5710 1.342672 ACCACCGGACACCTTTCAGT 61.343 55.000 9.46 0.00 0.00 3.41
2791 5711 0.884704 CCACCGGACACCTTTCAGTG 60.885 60.000 9.46 0.00 43.65 3.66
2792 5712 0.884704 CACCGGACACCTTTCAGTGG 60.885 60.000 9.46 0.00 42.28 4.00
2793 5713 1.342672 ACCGGACACCTTTCAGTGGT 61.343 55.000 9.46 0.00 42.28 4.16
2794 5714 0.602905 CCGGACACCTTTCAGTGGTC 60.603 60.000 0.00 0.00 42.28 4.02
2795 5715 0.602905 CGGACACCTTTCAGTGGTCC 60.603 60.000 0.00 0.00 42.28 4.46
2796 5716 0.765510 GGACACCTTTCAGTGGTCCT 59.234 55.000 6.71 0.00 42.28 3.85
2797 5717 1.543429 GGACACCTTTCAGTGGTCCTG 60.543 57.143 6.71 0.00 42.28 3.86
2798 5718 0.474184 ACACCTTTCAGTGGTCCTGG 59.526 55.000 0.00 0.00 42.28 4.45
2800 5720 1.697432 CACCTTTCAGTGGTCCTGGTA 59.303 52.381 0.00 0.00 41.83 3.25
2801 5721 1.697982 ACCTTTCAGTGGTCCTGGTAC 59.302 52.381 0.00 0.00 41.83 3.34
2802 5722 1.697432 CCTTTCAGTGGTCCTGGTACA 59.303 52.381 0.00 0.00 41.83 2.90
2803 5723 2.105821 CCTTTCAGTGGTCCTGGTACAA 59.894 50.000 0.00 0.00 41.83 2.41
2804 5724 3.244911 CCTTTCAGTGGTCCTGGTACAAT 60.245 47.826 0.00 0.00 41.83 2.71
2805 5725 4.019681 CCTTTCAGTGGTCCTGGTACAATA 60.020 45.833 0.00 0.00 41.83 1.90
2806 5726 4.546829 TTCAGTGGTCCTGGTACAATAC 57.453 45.455 0.00 0.00 41.83 1.89
2808 5728 3.513912 TCAGTGGTCCTGGTACAATACTG 59.486 47.826 0.00 0.00 41.83 2.74
2811 5731 5.362717 CAGTGGTCCTGGTACAATACTGATA 59.637 44.000 14.62 0.00 38.70 2.15
2812 5732 5.962031 AGTGGTCCTGGTACAATACTGATAA 59.038 40.000 0.00 0.00 38.70 1.75
2813 5733 6.047231 GTGGTCCTGGTACAATACTGATAAC 58.953 44.000 0.00 0.00 38.70 1.89
2814 5734 5.129815 TGGTCCTGGTACAATACTGATAACC 59.870 44.000 0.00 0.00 38.70 2.85
2815 5735 5.454329 GGTCCTGGTACAATACTGATAACCC 60.454 48.000 0.00 0.00 38.70 4.11
2816 5736 4.657039 TCCTGGTACAATACTGATAACCCC 59.343 45.833 0.00 0.00 38.70 4.95
2817 5737 4.202430 CCTGGTACAATACTGATAACCCCC 60.202 50.000 0.00 0.00 38.70 5.40
2818 5738 3.388676 TGGTACAATACTGATAACCCCCG 59.611 47.826 0.00 0.00 31.92 5.73
2819 5739 3.642848 GGTACAATACTGATAACCCCCGA 59.357 47.826 0.00 0.00 0.00 5.14
2820 5740 4.101430 GGTACAATACTGATAACCCCCGAA 59.899 45.833 0.00 0.00 0.00 4.30
2821 5741 4.847990 ACAATACTGATAACCCCCGAAA 57.152 40.909 0.00 0.00 0.00 3.46
2822 5742 4.520179 ACAATACTGATAACCCCCGAAAC 58.480 43.478 0.00 0.00 0.00 2.78
2823 5743 3.851458 ATACTGATAACCCCCGAAACC 57.149 47.619 0.00 0.00 0.00 3.27
2824 5744 1.364269 ACTGATAACCCCCGAAACCA 58.636 50.000 0.00 0.00 0.00 3.67
2825 5745 1.920351 ACTGATAACCCCCGAAACCAT 59.080 47.619 0.00 0.00 0.00 3.55
2826 5746 2.310647 ACTGATAACCCCCGAAACCATT 59.689 45.455 0.00 0.00 0.00 3.16
2827 5747 2.949644 CTGATAACCCCCGAAACCATTC 59.050 50.000 0.00 0.00 0.00 2.67
2828 5748 2.304092 GATAACCCCCGAAACCATTCC 58.696 52.381 0.00 0.00 31.52 3.01
2829 5749 0.035247 TAACCCCCGAAACCATTCCG 60.035 55.000 0.00 0.00 31.52 4.30
2830 5750 2.439519 CCCCCGAAACCATTCCGG 60.440 66.667 0.00 0.00 42.50 5.14
2841 5761 2.185004 CCATTCCGGTGACTGAAACT 57.815 50.000 0.00 0.00 37.11 2.66
2842 5762 1.806542 CCATTCCGGTGACTGAAACTG 59.193 52.381 0.00 0.00 37.11 3.16
2843 5763 1.806542 CATTCCGGTGACTGAAACTGG 59.193 52.381 0.00 6.15 44.25 4.00
2845 5765 0.391597 TCCGGTGACTGAAACTGGAC 59.608 55.000 0.00 0.00 46.08 4.02
2846 5766 0.393077 CCGGTGACTGAAACTGGACT 59.607 55.000 0.00 0.00 45.52 3.85
2847 5767 1.202651 CCGGTGACTGAAACTGGACTT 60.203 52.381 0.00 0.00 45.52 3.01
2848 5768 2.135933 CGGTGACTGAAACTGGACTTC 58.864 52.381 0.00 0.00 0.00 3.01
2849 5769 2.495084 GGTGACTGAAACTGGACTTCC 58.505 52.381 0.00 0.00 0.00 3.46
2850 5770 2.495084 GTGACTGAAACTGGACTTCCC 58.505 52.381 0.00 0.00 34.29 3.97
2851 5771 2.123589 TGACTGAAACTGGACTTCCCA 58.876 47.619 0.00 0.00 44.25 4.37
2852 5772 2.711009 TGACTGAAACTGGACTTCCCAT 59.289 45.455 0.00 0.00 45.57 4.00
2853 5773 3.907474 TGACTGAAACTGGACTTCCCATA 59.093 43.478 0.00 0.00 45.57 2.74
2854 5774 4.536090 TGACTGAAACTGGACTTCCCATAT 59.464 41.667 0.00 0.00 45.57 1.78
2855 5775 5.724370 TGACTGAAACTGGACTTCCCATATA 59.276 40.000 0.00 0.00 45.57 0.86
2856 5776 6.386927 TGACTGAAACTGGACTTCCCATATAT 59.613 38.462 0.00 0.00 45.57 0.86
2857 5777 7.567250 TGACTGAAACTGGACTTCCCATATATA 59.433 37.037 0.00 0.00 45.57 0.86
2858 5778 8.331931 ACTGAAACTGGACTTCCCATATATAA 57.668 34.615 0.00 0.00 45.57 0.98
2859 5779 8.778059 ACTGAAACTGGACTTCCCATATATAAA 58.222 33.333 0.00 0.00 45.57 1.40
2860 5780 9.799106 CTGAAACTGGACTTCCCATATATAAAT 57.201 33.333 0.00 0.00 45.57 1.40
2861 5781 9.793259 TGAAACTGGACTTCCCATATATAAATC 57.207 33.333 0.00 0.00 45.57 2.17
2871 5791 9.601217 CTTCCCATATATAAATCTTTACCTCCG 57.399 37.037 0.00 0.00 0.00 4.63
2872 5792 8.086143 TCCCATATATAAATCTTTACCTCCGG 57.914 38.462 0.00 0.00 0.00 5.14
2873 5793 7.902401 TCCCATATATAAATCTTTACCTCCGGA 59.098 37.037 2.93 2.93 0.00 5.14
2874 5794 7.985752 CCCATATATAAATCTTTACCTCCGGAC 59.014 40.741 0.00 0.00 0.00 4.79
2875 5795 7.985752 CCATATATAAATCTTTACCTCCGGACC 59.014 40.741 0.00 0.00 0.00 4.46
2876 5796 8.537016 CATATATAAATCTTTACCTCCGGACCA 58.463 37.037 0.00 0.00 0.00 4.02
2877 5797 5.906772 ATAAATCTTTACCTCCGGACCAT 57.093 39.130 0.00 0.00 0.00 3.55
2878 5798 4.586306 AAATCTTTACCTCCGGACCATT 57.414 40.909 0.00 0.00 0.00 3.16
2879 5799 3.840124 ATCTTTACCTCCGGACCATTC 57.160 47.619 0.00 0.00 0.00 2.67
2880 5800 1.835531 TCTTTACCTCCGGACCATTCC 59.164 52.381 0.00 0.00 38.77 3.01
2888 5808 4.957164 GGACCATTCCGGAACTCC 57.043 61.111 21.56 19.02 38.63 3.85
2889 5809 2.297937 GGACCATTCCGGAACTCCT 58.702 57.895 21.56 0.00 38.63 3.69
2890 5810 0.178301 GGACCATTCCGGAACTCCTC 59.822 60.000 21.56 11.38 38.63 3.71
2891 5811 0.179108 GACCATTCCGGAACTCCTCG 60.179 60.000 21.56 5.78 38.63 4.63
2892 5812 0.903454 ACCATTCCGGAACTCCTCGT 60.903 55.000 21.56 6.43 38.63 4.18
2893 5813 0.460284 CCATTCCGGAACTCCTCGTG 60.460 60.000 21.56 11.93 36.56 4.35
2894 5814 0.530744 CATTCCGGAACTCCTCGTGA 59.469 55.000 21.56 0.00 0.00 4.35
2895 5815 1.137086 CATTCCGGAACTCCTCGTGAT 59.863 52.381 21.56 0.00 0.00 3.06
2896 5816 0.530744 TTCCGGAACTCCTCGTGATG 59.469 55.000 14.35 0.00 0.00 3.07
2897 5817 0.611062 TCCGGAACTCCTCGTGATGT 60.611 55.000 0.00 0.00 0.00 3.06
2898 5818 0.179134 CCGGAACTCCTCGTGATGTC 60.179 60.000 0.00 0.00 0.00 3.06
2899 5819 0.179134 CGGAACTCCTCGTGATGTCC 60.179 60.000 0.00 0.00 0.00 4.02
2900 5820 0.179134 GGAACTCCTCGTGATGTCCG 60.179 60.000 0.00 0.00 0.00 4.79
2901 5821 0.179134 GAACTCCTCGTGATGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
2902 5822 1.605058 AACTCCTCGTGATGTCCGGG 61.605 60.000 0.00 0.00 0.00 5.73
2903 5823 1.753078 CTCCTCGTGATGTCCGGGA 60.753 63.158 0.00 0.00 0.00 5.14
2904 5824 1.076265 TCCTCGTGATGTCCGGGAT 60.076 57.895 0.00 0.00 0.00 3.85
2905 5825 1.107538 TCCTCGTGATGTCCGGGATC 61.108 60.000 0.00 4.38 0.00 3.36
2906 5826 1.109920 CCTCGTGATGTCCGGGATCT 61.110 60.000 0.00 0.00 0.00 2.75
2907 5827 0.312416 CTCGTGATGTCCGGGATCTC 59.688 60.000 0.00 4.08 0.00 2.75
2908 5828 0.395173 TCGTGATGTCCGGGATCTCA 60.395 55.000 0.00 3.63 0.00 3.27
2909 5829 0.676184 CGTGATGTCCGGGATCTCAT 59.324 55.000 0.00 6.56 0.00 2.90
2910 5830 1.336332 CGTGATGTCCGGGATCTCATC 60.336 57.143 15.60 15.60 37.68 2.92
2919 5839 2.356992 GGATCTCATCCGGGACTCC 58.643 63.158 0.00 0.00 40.13 3.85
2920 5840 0.470080 GGATCTCATCCGGGACTCCA 60.470 60.000 0.00 0.00 40.13 3.86
2921 5841 1.414158 GATCTCATCCGGGACTCCAA 58.586 55.000 0.00 0.00 0.00 3.53
2922 5842 1.762957 GATCTCATCCGGGACTCCAAA 59.237 52.381 0.00 0.00 0.00 3.28
2923 5843 0.902531 TCTCATCCGGGACTCCAAAC 59.097 55.000 0.00 0.00 0.00 2.93
2924 5844 0.613260 CTCATCCGGGACTCCAAACA 59.387 55.000 0.00 0.00 0.00 2.83
2925 5845 1.003118 CTCATCCGGGACTCCAAACAA 59.997 52.381 0.00 0.00 0.00 2.83
2926 5846 1.165270 CATCCGGGACTCCAAACAAC 58.835 55.000 0.00 0.00 0.00 3.32
2927 5847 0.037734 ATCCGGGACTCCAAACAACC 59.962 55.000 0.00 0.00 0.00 3.77
2928 5848 1.057851 TCCGGGACTCCAAACAACCT 61.058 55.000 0.00 0.00 0.00 3.50
2929 5849 0.179001 CCGGGACTCCAAACAACCTT 60.179 55.000 0.00 0.00 0.00 3.50
2930 5850 1.235724 CGGGACTCCAAACAACCTTC 58.764 55.000 0.00 0.00 0.00 3.46
2931 5851 1.235724 GGGACTCCAAACAACCTTCG 58.764 55.000 0.00 0.00 0.00 3.79
2932 5852 1.235724 GGACTCCAAACAACCTTCGG 58.764 55.000 0.00 0.00 0.00 4.30
2933 5853 0.591659 GACTCCAAACAACCTTCGGC 59.408 55.000 0.00 0.00 0.00 5.54
2934 5854 1.164041 ACTCCAAACAACCTTCGGCG 61.164 55.000 0.00 0.00 0.00 6.46
2935 5855 0.882927 CTCCAAACAACCTTCGGCGA 60.883 55.000 4.99 4.99 0.00 5.54
2936 5856 1.161563 TCCAAACAACCTTCGGCGAC 61.162 55.000 10.16 0.00 0.00 5.19
2937 5857 1.281656 CAAACAACCTTCGGCGACC 59.718 57.895 10.16 0.00 0.00 4.79
2938 5858 1.153127 AAACAACCTTCGGCGACCA 60.153 52.632 10.16 0.00 0.00 4.02
2939 5859 1.441732 AAACAACCTTCGGCGACCAC 61.442 55.000 10.16 0.00 0.00 4.16
2940 5860 2.280524 CAACCTTCGGCGACCACA 60.281 61.111 10.16 0.00 0.00 4.17
2941 5861 1.671054 CAACCTTCGGCGACCACAT 60.671 57.895 10.16 0.00 0.00 3.21
2942 5862 0.390603 CAACCTTCGGCGACCACATA 60.391 55.000 10.16 0.00 0.00 2.29
2943 5863 0.390735 AACCTTCGGCGACCACATAC 60.391 55.000 10.16 0.00 0.00 2.39
2944 5864 1.216977 CCTTCGGCGACCACATACA 59.783 57.895 10.16 0.00 0.00 2.29
2945 5865 0.390603 CCTTCGGCGACCACATACAA 60.391 55.000 10.16 0.00 0.00 2.41
2946 5866 1.651987 CTTCGGCGACCACATACAAT 58.348 50.000 10.16 0.00 0.00 2.71
2947 5867 2.006888 CTTCGGCGACCACATACAATT 58.993 47.619 10.16 0.00 0.00 2.32
2948 5868 2.102070 TCGGCGACCACATACAATTT 57.898 45.000 4.99 0.00 0.00 1.82
2949 5869 2.004017 TCGGCGACCACATACAATTTC 58.996 47.619 4.99 0.00 0.00 2.17
2950 5870 1.063469 CGGCGACCACATACAATTTCC 59.937 52.381 0.00 0.00 0.00 3.13
2951 5871 1.404035 GGCGACCACATACAATTTCCC 59.596 52.381 0.00 0.00 0.00 3.97
2952 5872 2.088423 GCGACCACATACAATTTCCCA 58.912 47.619 0.00 0.00 0.00 4.37
2953 5873 2.687935 GCGACCACATACAATTTCCCAT 59.312 45.455 0.00 0.00 0.00 4.00
2954 5874 3.880490 GCGACCACATACAATTTCCCATA 59.120 43.478 0.00 0.00 0.00 2.74
2955 5875 4.336993 GCGACCACATACAATTTCCCATAA 59.663 41.667 0.00 0.00 0.00 1.90
2956 5876 5.732247 GCGACCACATACAATTTCCCATAAC 60.732 44.000 0.00 0.00 0.00 1.89
2957 5877 5.355630 CGACCACATACAATTTCCCATAACA 59.644 40.000 0.00 0.00 0.00 2.41
2958 5878 6.127869 CGACCACATACAATTTCCCATAACAA 60.128 38.462 0.00 0.00 0.00 2.83
2959 5879 6.930731 ACCACATACAATTTCCCATAACAAC 58.069 36.000 0.00 0.00 0.00 3.32
2960 5880 6.723977 ACCACATACAATTTCCCATAACAACT 59.276 34.615 0.00 0.00 0.00 3.16
2961 5881 7.093945 ACCACATACAATTTCCCATAACAACTC 60.094 37.037 0.00 0.00 0.00 3.01
2962 5882 7.122650 CCACATACAATTTCCCATAACAACTCT 59.877 37.037 0.00 0.00 0.00 3.24
2963 5883 9.173021 CACATACAATTTCCCATAACAACTCTA 57.827 33.333 0.00 0.00 0.00 2.43
2964 5884 9.396022 ACATACAATTTCCCATAACAACTCTAG 57.604 33.333 0.00 0.00 0.00 2.43
2965 5885 6.759497 ACAATTTCCCATAACAACTCTAGC 57.241 37.500 0.00 0.00 0.00 3.42
2966 5886 5.354234 ACAATTTCCCATAACAACTCTAGCG 59.646 40.000 0.00 0.00 0.00 4.26
2967 5887 4.546829 TTTCCCATAACAACTCTAGCGT 57.453 40.909 0.00 0.00 0.00 5.07
2968 5888 3.795623 TCCCATAACAACTCTAGCGTC 57.204 47.619 0.00 0.00 0.00 5.19
2969 5889 3.093814 TCCCATAACAACTCTAGCGTCA 58.906 45.455 0.00 0.00 0.00 4.35
2970 5890 3.130516 TCCCATAACAACTCTAGCGTCAG 59.869 47.826 0.00 0.00 0.00 3.51
2971 5891 2.860735 CCATAACAACTCTAGCGTCAGC 59.139 50.000 0.00 0.00 45.58 4.26
2982 5902 2.823628 GCGTCAGCGAACCTTAAGT 58.176 52.632 0.97 0.00 41.33 2.24
2983 5903 0.438830 GCGTCAGCGAACCTTAAGTG 59.561 55.000 0.97 0.00 41.33 3.16
2984 5904 1.779569 CGTCAGCGAACCTTAAGTGT 58.220 50.000 0.97 0.00 41.33 3.55
2985 5905 1.455786 CGTCAGCGAACCTTAAGTGTG 59.544 52.381 0.97 0.00 41.33 3.82
2986 5906 2.480845 GTCAGCGAACCTTAAGTGTGT 58.519 47.619 0.97 0.00 0.00 3.72
2987 5907 3.645884 GTCAGCGAACCTTAAGTGTGTA 58.354 45.455 0.97 0.00 0.00 2.90
2988 5908 3.673809 GTCAGCGAACCTTAAGTGTGTAG 59.326 47.826 0.97 0.00 0.00 2.74
2989 5909 3.570975 TCAGCGAACCTTAAGTGTGTAGA 59.429 43.478 0.97 0.00 0.00 2.59
2990 5910 3.673809 CAGCGAACCTTAAGTGTGTAGAC 59.326 47.826 0.97 0.00 0.00 2.59
2991 5911 2.991866 GCGAACCTTAAGTGTGTAGACC 59.008 50.000 0.97 0.00 0.00 3.85
2992 5912 3.582780 CGAACCTTAAGTGTGTAGACCC 58.417 50.000 0.97 0.00 0.00 4.46
2993 5913 3.257624 CGAACCTTAAGTGTGTAGACCCT 59.742 47.826 0.97 0.00 0.00 4.34
2994 5914 4.460382 CGAACCTTAAGTGTGTAGACCCTA 59.540 45.833 0.97 0.00 0.00 3.53
2995 5915 5.126707 CGAACCTTAAGTGTGTAGACCCTAT 59.873 44.000 0.97 0.00 0.00 2.57
2996 5916 5.934402 ACCTTAAGTGTGTAGACCCTATG 57.066 43.478 0.97 0.00 0.00 2.23
2997 5917 4.715297 ACCTTAAGTGTGTAGACCCTATGG 59.285 45.833 0.97 0.00 37.80 2.74
3027 5947 3.748863 ATGCAGACATGACCGAGAC 57.251 52.632 0.00 0.00 34.35 3.36
3028 5948 0.176680 ATGCAGACATGACCGAGACC 59.823 55.000 0.00 0.00 34.35 3.85
3029 5949 0.900182 TGCAGACATGACCGAGACCT 60.900 55.000 0.00 0.00 0.00 3.85
3030 5950 0.179124 GCAGACATGACCGAGACCTC 60.179 60.000 0.00 0.00 0.00 3.85
3031 5951 1.468985 CAGACATGACCGAGACCTCT 58.531 55.000 0.00 0.00 0.00 3.69
3032 5952 1.403679 CAGACATGACCGAGACCTCTC 59.596 57.143 0.00 0.00 39.55 3.20
3033 5953 1.283613 AGACATGACCGAGACCTCTCT 59.716 52.381 0.00 0.00 40.75 3.10
3034 5954 1.673920 GACATGACCGAGACCTCTCTC 59.326 57.143 0.00 0.00 40.75 3.20
3035 5955 1.028905 CATGACCGAGACCTCTCTCC 58.971 60.000 0.93 0.00 40.10 3.71
3036 5956 0.464735 ATGACCGAGACCTCTCTCCG 60.465 60.000 0.93 0.00 40.10 4.63
3037 5957 1.820481 GACCGAGACCTCTCTCCGG 60.820 68.421 0.00 0.00 40.10 5.14
3038 5958 3.213402 CCGAGACCTCTCTCCGGC 61.213 72.222 0.00 0.00 40.10 6.13
3039 5959 3.213402 CGAGACCTCTCTCCGGCC 61.213 72.222 0.00 0.00 40.10 6.13
3040 5960 2.043852 GAGACCTCTCTCCGGCCA 60.044 66.667 2.24 0.00 37.56 5.36
3041 5961 1.682684 GAGACCTCTCTCCGGCCAA 60.683 63.158 2.24 0.00 37.56 4.52
3042 5962 1.002274 AGACCTCTCTCCGGCCAAT 59.998 57.895 2.24 0.00 0.00 3.16
3043 5963 0.261991 AGACCTCTCTCCGGCCAATA 59.738 55.000 2.24 0.00 0.00 1.90
3044 5964 1.120530 GACCTCTCTCCGGCCAATAA 58.879 55.000 2.24 0.00 0.00 1.40
3045 5965 0.831307 ACCTCTCTCCGGCCAATAAC 59.169 55.000 2.24 0.00 0.00 1.89
3046 5966 0.106894 CCTCTCTCCGGCCAATAACC 59.893 60.000 2.24 0.00 0.00 2.85
3047 5967 0.830648 CTCTCTCCGGCCAATAACCA 59.169 55.000 2.24 0.00 0.00 3.67
3048 5968 1.209504 CTCTCTCCGGCCAATAACCAA 59.790 52.381 2.24 0.00 0.00 3.67
3049 5969 1.065709 TCTCTCCGGCCAATAACCAAC 60.066 52.381 2.24 0.00 0.00 3.77
3050 5970 0.693622 TCTCCGGCCAATAACCAACA 59.306 50.000 2.24 0.00 0.00 3.33
3051 5971 1.094785 CTCCGGCCAATAACCAACAG 58.905 55.000 2.24 0.00 0.00 3.16
3052 5972 0.963355 TCCGGCCAATAACCAACAGC 60.963 55.000 2.24 0.00 0.00 4.40
3053 5973 1.136565 CGGCCAATAACCAACAGCG 59.863 57.895 2.24 0.00 0.00 5.18
3054 5974 1.510844 GGCCAATAACCAACAGCGG 59.489 57.895 0.00 0.00 0.00 5.52
3055 5975 1.510844 GCCAATAACCAACAGCGGG 59.489 57.895 0.00 0.00 0.00 6.13
3056 5976 0.963355 GCCAATAACCAACAGCGGGA 60.963 55.000 0.00 0.00 0.00 5.14
3057 5977 1.762708 CCAATAACCAACAGCGGGAT 58.237 50.000 0.00 0.00 0.00 3.85
3058 5978 1.676006 CCAATAACCAACAGCGGGATC 59.324 52.381 0.00 0.00 0.00 3.36
3059 5979 2.643551 CAATAACCAACAGCGGGATCT 58.356 47.619 0.00 0.00 0.00 2.75
3060 5980 2.332063 ATAACCAACAGCGGGATCTG 57.668 50.000 0.00 0.00 39.86 2.90
3061 5981 0.251916 TAACCAACAGCGGGATCTGG 59.748 55.000 0.00 0.00 38.36 3.86
3062 5982 1.488705 AACCAACAGCGGGATCTGGA 61.489 55.000 2.17 0.00 38.36 3.86
3063 5983 1.274703 ACCAACAGCGGGATCTGGAT 61.275 55.000 2.17 0.00 38.36 3.41
3064 5984 0.758734 CCAACAGCGGGATCTGGATA 59.241 55.000 0.00 0.00 38.36 2.59
3065 5985 1.541233 CCAACAGCGGGATCTGGATAC 60.541 57.143 0.00 0.00 38.36 2.24
3066 5986 0.759346 AACAGCGGGATCTGGATACC 59.241 55.000 1.81 1.81 38.49 2.73
3067 5987 1.122019 ACAGCGGGATCTGGATACCC 61.122 60.000 6.28 7.03 38.66 3.69
3068 5988 1.121407 CAGCGGGATCTGGATACCCA 61.121 60.000 6.28 0.00 43.40 4.51
3069 5989 0.178891 AGCGGGATCTGGATACCCAT 60.179 55.000 6.28 0.00 42.59 4.00
3070 5990 0.036010 GCGGGATCTGGATACCCATG 60.036 60.000 6.28 0.00 42.59 3.66
3071 5991 1.352083 CGGGATCTGGATACCCATGT 58.648 55.000 6.28 0.00 42.59 3.21
3072 5992 1.699634 CGGGATCTGGATACCCATGTT 59.300 52.381 6.28 0.00 42.59 2.71
3073 5993 2.550855 CGGGATCTGGATACCCATGTTG 60.551 54.545 6.28 0.00 42.59 3.33
3074 5994 2.224867 GGGATCTGGATACCCATGTTGG 60.225 54.545 0.39 0.00 42.59 3.77
3075 5995 2.508526 GATCTGGATACCCATGTTGGC 58.491 52.381 0.00 0.00 42.59 4.52
3076 5996 1.595311 TCTGGATACCCATGTTGGCT 58.405 50.000 0.00 0.00 42.59 4.75
3077 5997 1.490490 TCTGGATACCCATGTTGGCTC 59.510 52.381 0.00 0.00 42.59 4.70
3078 5998 0.550914 TGGATACCCATGTTGGCTCC 59.449 55.000 0.00 0.00 37.58 4.70
3079 5999 0.178990 GGATACCCATGTTGGCTCCC 60.179 60.000 0.00 0.00 35.79 4.30
3080 6000 0.550914 GATACCCATGTTGGCTCCCA 59.449 55.000 0.00 0.00 35.79 4.37
3081 6001 0.258774 ATACCCATGTTGGCTCCCAC 59.741 55.000 0.00 0.00 35.79 4.61
3082 6002 1.136961 TACCCATGTTGGCTCCCACA 61.137 55.000 0.00 0.00 35.79 4.17
3083 6003 1.000739 CCCATGTTGGCTCCCACAT 59.999 57.895 0.24 0.24 35.79 3.21
3084 6004 1.324740 CCCATGTTGGCTCCCACATG 61.325 60.000 20.24 20.24 39.90 3.21
3085 6005 0.612732 CCATGTTGGCTCCCACATGT 60.613 55.000 23.30 0.00 39.27 3.21
3086 6006 1.259609 CATGTTGGCTCCCACATGTT 58.740 50.000 19.38 0.00 37.78 2.71
3087 6007 1.203052 CATGTTGGCTCCCACATGTTC 59.797 52.381 19.38 0.00 37.78 3.18
3088 6008 0.539438 TGTTGGCTCCCACATGTTCC 60.539 55.000 0.00 0.00 30.78 3.62
3089 6009 0.539438 GTTGGCTCCCACATGTTCCA 60.539 55.000 0.00 0.00 30.78 3.53
3090 6010 0.187117 TTGGCTCCCACATGTTCCAA 59.813 50.000 0.00 2.53 30.78 3.53
3091 6011 0.251297 TGGCTCCCACATGTTCCAAG 60.251 55.000 0.00 0.00 0.00 3.61
3092 6012 0.038166 GGCTCCCACATGTTCCAAGA 59.962 55.000 0.00 0.00 0.00 3.02
3093 6013 1.168714 GCTCCCACATGTTCCAAGAC 58.831 55.000 0.00 0.00 0.00 3.01
3094 6014 1.442769 CTCCCACATGTTCCAAGACG 58.557 55.000 0.00 0.00 0.00 4.18
3095 6015 1.001974 CTCCCACATGTTCCAAGACGA 59.998 52.381 0.00 0.00 0.00 4.20
3096 6016 1.628340 TCCCACATGTTCCAAGACGAT 59.372 47.619 0.00 0.00 0.00 3.73
3097 6017 2.009774 CCCACATGTTCCAAGACGATC 58.990 52.381 0.00 0.00 0.00 3.69
3098 6018 2.355108 CCCACATGTTCCAAGACGATCT 60.355 50.000 0.00 0.00 0.00 2.75
3099 6019 2.932614 CCACATGTTCCAAGACGATCTC 59.067 50.000 0.00 0.00 0.00 2.75
3100 6020 3.588955 CACATGTTCCAAGACGATCTCA 58.411 45.455 0.00 0.00 0.00 3.27
3101 6021 4.186926 CACATGTTCCAAGACGATCTCAT 58.813 43.478 0.00 0.00 0.00 2.90
3102 6022 4.269603 CACATGTTCCAAGACGATCTCATC 59.730 45.833 0.00 0.00 0.00 2.92
3114 6034 2.398498 GATCTCATCGGATGAACCACG 58.602 52.381 20.29 9.50 39.11 4.94
3115 6035 1.470051 TCTCATCGGATGAACCACGA 58.530 50.000 20.29 11.52 39.11 4.35
3119 6039 2.225068 ATCGGATGAACCACGATGTC 57.775 50.000 0.00 0.00 44.66 3.06
3120 6040 0.179148 TCGGATGAACCACGATGTCG 60.179 55.000 0.11 0.11 46.33 4.35
3121 6041 1.145759 CGGATGAACCACGATGTCGG 61.146 60.000 7.38 0.00 44.95 4.79
3122 6042 0.810031 GGATGAACCACGATGTCGGG 60.810 60.000 7.38 2.13 44.95 5.14
3129 6049 3.451793 CACGATGTCGGGGATTCAA 57.548 52.632 7.38 0.00 44.95 2.69
3130 6050 1.953559 CACGATGTCGGGGATTCAAT 58.046 50.000 7.38 0.00 44.95 2.57
3131 6051 1.867233 CACGATGTCGGGGATTCAATC 59.133 52.381 7.38 0.00 44.95 2.67
3132 6052 1.484653 ACGATGTCGGGGATTCAATCA 59.515 47.619 7.38 0.00 44.95 2.57
3133 6053 2.093181 ACGATGTCGGGGATTCAATCAA 60.093 45.455 7.38 0.00 44.95 2.57
3134 6054 3.141398 CGATGTCGGGGATTCAATCAAT 58.859 45.455 0.00 0.00 35.37 2.57
3135 6055 3.187227 CGATGTCGGGGATTCAATCAATC 59.813 47.826 0.00 0.00 36.94 2.67
3149 6069 7.504924 TTCAATCAATCCCGTATACAATTCC 57.495 36.000 3.32 0.00 0.00 3.01
3150 6070 6.001460 TCAATCAATCCCGTATACAATTCCC 58.999 40.000 3.32 0.00 0.00 3.97
3151 6071 5.843019 ATCAATCCCGTATACAATTCCCT 57.157 39.130 3.32 0.00 0.00 4.20
3152 6072 5.640158 TCAATCCCGTATACAATTCCCTT 57.360 39.130 3.32 0.00 0.00 3.95
3153 6073 6.008696 TCAATCCCGTATACAATTCCCTTT 57.991 37.500 3.32 0.00 0.00 3.11
3154 6074 5.825679 TCAATCCCGTATACAATTCCCTTTG 59.174 40.000 3.32 0.00 0.00 2.77
3155 6075 4.847990 TCCCGTATACAATTCCCTTTGT 57.152 40.909 3.32 0.00 42.31 2.83
3156 6076 4.773013 TCCCGTATACAATTCCCTTTGTC 58.227 43.478 3.32 0.00 40.25 3.18
3157 6077 4.472108 TCCCGTATACAATTCCCTTTGTCT 59.528 41.667 3.32 0.00 40.25 3.41
3158 6078 5.662208 TCCCGTATACAATTCCCTTTGTCTA 59.338 40.000 3.32 0.00 40.25 2.59
3159 6079 5.756833 CCCGTATACAATTCCCTTTGTCTAC 59.243 44.000 3.32 0.00 40.25 2.59
3160 6080 5.756833 CCGTATACAATTCCCTTTGTCTACC 59.243 44.000 3.32 0.00 40.25 3.18
3161 6081 5.461078 CGTATACAATTCCCTTTGTCTACCG 59.539 44.000 3.32 0.00 40.25 4.02
3162 6082 3.067684 ACAATTCCCTTTGTCTACCGG 57.932 47.619 0.00 0.00 34.83 5.28
3163 6083 2.374170 ACAATTCCCTTTGTCTACCGGT 59.626 45.455 13.98 13.98 34.83 5.28
3164 6084 3.583966 ACAATTCCCTTTGTCTACCGGTA 59.416 43.478 14.95 14.95 34.83 4.02
3165 6085 4.226620 ACAATTCCCTTTGTCTACCGGTAT 59.773 41.667 16.25 0.00 34.83 2.73
3166 6086 3.899052 TTCCCTTTGTCTACCGGTATG 57.101 47.619 16.25 9.63 0.00 2.39
3167 6087 2.823959 TCCCTTTGTCTACCGGTATGT 58.176 47.619 16.25 0.00 0.00 2.29
3168 6088 3.175594 TCCCTTTGTCTACCGGTATGTT 58.824 45.455 16.25 0.00 0.00 2.71
3169 6089 4.352009 TCCCTTTGTCTACCGGTATGTTA 58.648 43.478 16.25 0.00 0.00 2.41
3170 6090 4.160252 TCCCTTTGTCTACCGGTATGTTAC 59.840 45.833 16.25 11.55 0.00 2.50
3171 6091 4.161001 CCCTTTGTCTACCGGTATGTTACT 59.839 45.833 16.25 0.00 0.00 2.24
3172 6092 5.337813 CCCTTTGTCTACCGGTATGTTACTT 60.338 44.000 16.25 0.00 0.00 2.24
3173 6093 5.579511 CCTTTGTCTACCGGTATGTTACTTG 59.420 44.000 16.25 0.34 0.00 3.16
3174 6094 4.114058 TGTCTACCGGTATGTTACTTGC 57.886 45.455 16.25 0.00 0.00 4.01
3175 6095 3.119029 TGTCTACCGGTATGTTACTTGCC 60.119 47.826 16.25 0.00 0.00 4.52
3176 6096 2.431782 TCTACCGGTATGTTACTTGCCC 59.568 50.000 16.25 0.00 0.00 5.36
3177 6097 0.108041 ACCGGTATGTTACTTGCCCG 60.108 55.000 4.49 0.00 35.32 6.13
3178 6098 0.176219 CCGGTATGTTACTTGCCCGA 59.824 55.000 10.92 0.00 37.66 5.14
3179 6099 1.567504 CGGTATGTTACTTGCCCGAG 58.432 55.000 0.00 0.00 37.66 4.63
3180 6100 1.135527 CGGTATGTTACTTGCCCGAGA 59.864 52.381 0.00 0.00 37.66 4.04
3181 6101 2.223971 CGGTATGTTACTTGCCCGAGAT 60.224 50.000 0.00 0.00 37.66 2.75
3182 6102 3.740141 CGGTATGTTACTTGCCCGAGATT 60.740 47.826 0.00 0.00 37.66 2.40
3183 6103 3.808174 GGTATGTTACTTGCCCGAGATTC 59.192 47.826 0.00 0.00 0.00 2.52
3184 6104 2.004583 TGTTACTTGCCCGAGATTCG 57.995 50.000 0.00 0.00 40.07 3.34
3185 6105 1.546923 TGTTACTTGCCCGAGATTCGA 59.453 47.619 0.00 0.00 43.74 3.71
3186 6106 2.167693 TGTTACTTGCCCGAGATTCGAT 59.832 45.455 0.00 0.00 43.74 3.59
3187 6107 2.795175 TACTTGCCCGAGATTCGATC 57.205 50.000 0.00 0.00 43.74 3.69
3188 6108 0.824109 ACTTGCCCGAGATTCGATCA 59.176 50.000 0.00 0.00 43.74 2.92
3189 6109 1.414181 ACTTGCCCGAGATTCGATCAT 59.586 47.619 0.00 0.00 43.74 2.45
3190 6110 2.064762 CTTGCCCGAGATTCGATCATC 58.935 52.381 0.00 0.00 43.74 2.92
3191 6111 0.039165 TGCCCGAGATTCGATCATCG 60.039 55.000 0.00 0.00 43.74 3.84
3192 6112 0.734253 GCCCGAGATTCGATCATCGG 60.734 60.000 19.97 19.97 43.74 4.18
3193 6113 0.598562 CCCGAGATTCGATCATCGGT 59.401 55.000 23.05 0.00 43.74 4.69
3194 6114 1.810755 CCCGAGATTCGATCATCGGTA 59.189 52.381 23.05 0.00 43.74 4.02
3195 6115 2.423892 CCCGAGATTCGATCATCGGTAT 59.576 50.000 23.05 1.06 43.74 2.73
3196 6116 3.487711 CCCGAGATTCGATCATCGGTATC 60.488 52.174 23.05 10.58 43.74 2.24
3197 6117 3.487711 CCGAGATTCGATCATCGGTATCC 60.488 52.174 19.11 4.84 43.74 2.59
3198 6118 3.487711 CGAGATTCGATCATCGGTATCCC 60.488 52.174 7.33 1.29 43.74 3.85
3199 6119 2.761208 AGATTCGATCATCGGTATCCCC 59.239 50.000 7.33 0.00 40.88 4.81
3200 6120 2.003937 TTCGATCATCGGTATCCCCA 57.996 50.000 7.33 0.00 40.88 4.96
3201 6121 2.231716 TCGATCATCGGTATCCCCAT 57.768 50.000 7.33 0.00 40.88 4.00
3202 6122 3.375647 TCGATCATCGGTATCCCCATA 57.624 47.619 7.33 0.00 40.88 2.74
3203 6123 3.021695 TCGATCATCGGTATCCCCATAC 58.978 50.000 7.33 0.00 40.88 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 90 0.398381 AAACAAAGCTGGGGAAGGCA 60.398 50.000 0.00 0.00 0.00 4.75
419 449 6.936279 TCTCAAATAGGTGGTTAGAAGACTG 58.064 40.000 0.00 0.00 0.00 3.51
757 828 1.749286 GCAACTACGGTATGGCCCATT 60.749 52.381 0.00 0.00 0.00 3.16
1024 1972 3.975035 GCAACAAGCAAGTAGTACAAAGC 59.025 43.478 2.52 3.47 44.79 3.51
1461 2731 9.463443 CAAAAATGTTTCTTTAGTAAGGAGTGG 57.537 33.333 0.00 0.00 32.02 4.00
2210 4402 4.934356 TCTAAGCCAAAACATCCTCCAAT 58.066 39.130 0.00 0.00 0.00 3.16
2249 5011 9.405587 TCACATTATGAAACGAAAGAAAAATCC 57.594 29.630 0.00 0.00 33.02 3.01
2318 5094 8.359642 ACAAATGCACATCACAGTAAGTATTTT 58.640 29.630 0.00 0.00 0.00 1.82
2741 5661 1.741770 GGCCACCGCACTACAAGAG 60.742 63.158 0.00 0.00 36.38 2.85
2743 5663 2.746277 GGGCCACCGCACTACAAG 60.746 66.667 4.39 0.00 34.62 3.16
2767 5687 2.333701 AAAGGTGTCCGGTGGTCCAC 62.334 60.000 14.13 14.13 0.00 4.02
2768 5688 2.047213 GAAAGGTGTCCGGTGGTCCA 62.047 60.000 0.00 0.00 0.00 4.02
2769 5689 1.302271 GAAAGGTGTCCGGTGGTCC 60.302 63.158 0.00 0.16 0.00 4.46
2772 5692 0.884704 CACTGAAAGGTGTCCGGTGG 60.885 60.000 0.00 0.00 39.30 4.61
2773 5693 0.884704 CCACTGAAAGGTGTCCGGTG 60.885 60.000 0.00 0.00 39.30 4.94
2774 5694 1.342672 ACCACTGAAAGGTGTCCGGT 61.343 55.000 0.00 0.00 39.30 5.28
2775 5695 0.602905 GACCACTGAAAGGTGTCCGG 60.603 60.000 0.00 0.00 40.09 5.14
2776 5696 0.602905 GGACCACTGAAAGGTGTCCG 60.603 60.000 0.00 0.00 44.86 4.79
2777 5697 3.324207 GGACCACTGAAAGGTGTCC 57.676 57.895 0.00 0.00 46.58 4.02
2788 5708 3.786553 TCAGTATTGTACCAGGACCACT 58.213 45.455 0.00 0.00 0.00 4.00
2790 5710 5.129815 GGTTATCAGTATTGTACCAGGACCA 59.870 44.000 0.00 0.00 0.00 4.02
2791 5711 5.454329 GGGTTATCAGTATTGTACCAGGACC 60.454 48.000 0.00 0.00 0.00 4.46
2792 5712 5.454329 GGGGTTATCAGTATTGTACCAGGAC 60.454 48.000 0.00 0.00 0.00 3.85
2793 5713 4.657039 GGGGTTATCAGTATTGTACCAGGA 59.343 45.833 0.00 0.00 0.00 3.86
2794 5714 4.202430 GGGGGTTATCAGTATTGTACCAGG 60.202 50.000 0.00 0.00 0.00 4.45
2795 5715 4.502604 CGGGGGTTATCAGTATTGTACCAG 60.503 50.000 0.00 0.00 0.00 4.00
2796 5716 3.388676 CGGGGGTTATCAGTATTGTACCA 59.611 47.826 0.00 0.00 0.00 3.25
2797 5717 3.642848 TCGGGGGTTATCAGTATTGTACC 59.357 47.826 0.00 0.00 0.00 3.34
2798 5718 4.942761 TCGGGGGTTATCAGTATTGTAC 57.057 45.455 0.00 0.00 0.00 2.90
2800 5720 4.520179 GTTTCGGGGGTTATCAGTATTGT 58.480 43.478 0.00 0.00 0.00 2.71
2801 5721 3.881089 GGTTTCGGGGGTTATCAGTATTG 59.119 47.826 0.00 0.00 0.00 1.90
2802 5722 3.524380 TGGTTTCGGGGGTTATCAGTATT 59.476 43.478 0.00 0.00 0.00 1.89
2803 5723 3.116959 TGGTTTCGGGGGTTATCAGTAT 58.883 45.455 0.00 0.00 0.00 2.12
2804 5724 2.549082 TGGTTTCGGGGGTTATCAGTA 58.451 47.619 0.00 0.00 0.00 2.74
2805 5725 1.364269 TGGTTTCGGGGGTTATCAGT 58.636 50.000 0.00 0.00 0.00 3.41
2806 5726 2.729028 ATGGTTTCGGGGGTTATCAG 57.271 50.000 0.00 0.00 0.00 2.90
2808 5728 2.304092 GGAATGGTTTCGGGGGTTATC 58.696 52.381 0.00 0.00 32.28 1.75
2811 5731 1.303806 CGGAATGGTTTCGGGGGTT 60.304 57.895 0.00 0.00 32.28 4.11
2812 5732 2.353573 CGGAATGGTTTCGGGGGT 59.646 61.111 0.00 0.00 32.28 4.95
2813 5733 2.439519 CCGGAATGGTTTCGGGGG 60.440 66.667 0.00 0.00 44.53 5.40
2822 5742 1.806542 CAGTTTCAGTCACCGGAATGG 59.193 52.381 9.46 0.00 39.50 3.16
2823 5743 1.806542 CCAGTTTCAGTCACCGGAATG 59.193 52.381 9.46 0.00 40.37 2.67
2824 5744 1.697432 TCCAGTTTCAGTCACCGGAAT 59.303 47.619 9.46 0.00 0.00 3.01
2825 5745 1.124780 TCCAGTTTCAGTCACCGGAA 58.875 50.000 9.46 0.00 0.00 4.30
2826 5746 0.391597 GTCCAGTTTCAGTCACCGGA 59.608 55.000 9.46 0.00 0.00 5.14
2827 5747 0.393077 AGTCCAGTTTCAGTCACCGG 59.607 55.000 0.00 0.00 0.00 5.28
2828 5748 2.135933 GAAGTCCAGTTTCAGTCACCG 58.864 52.381 0.00 0.00 0.00 4.94
2829 5749 2.495084 GGAAGTCCAGTTTCAGTCACC 58.505 52.381 0.00 0.00 35.64 4.02
2830 5750 2.158813 TGGGAAGTCCAGTTTCAGTCAC 60.159 50.000 0.00 0.00 41.46 3.67
2831 5751 2.123589 TGGGAAGTCCAGTTTCAGTCA 58.876 47.619 0.00 0.00 41.46 3.41
2832 5752 2.930826 TGGGAAGTCCAGTTTCAGTC 57.069 50.000 0.00 0.00 41.46 3.51
2845 5765 9.601217 CGGAGGTAAAGATTTATATATGGGAAG 57.399 37.037 0.00 0.00 0.00 3.46
2871 5791 0.178301 GAGGAGTTCCGGAATGGTCC 59.822 60.000 25.25 25.25 42.08 4.46
2872 5792 0.179108 CGAGGAGTTCCGGAATGGTC 60.179 60.000 22.04 16.69 42.08 4.02
2873 5793 0.903454 ACGAGGAGTTCCGGAATGGT 60.903 55.000 22.04 8.81 42.08 3.55
2874 5794 0.460284 CACGAGGAGTTCCGGAATGG 60.460 60.000 22.04 8.10 42.08 3.16
2875 5795 0.530744 TCACGAGGAGTTCCGGAATG 59.469 55.000 22.04 12.72 42.08 2.67
2876 5796 1.137086 CATCACGAGGAGTTCCGGAAT 59.863 52.381 22.04 9.53 42.08 3.01
2877 5797 0.530744 CATCACGAGGAGTTCCGGAA 59.469 55.000 14.35 14.35 42.08 4.30
2878 5798 0.611062 ACATCACGAGGAGTTCCGGA 60.611 55.000 0.00 0.00 42.08 5.14
2879 5799 0.179134 GACATCACGAGGAGTTCCGG 60.179 60.000 0.00 0.00 42.08 5.14
2880 5800 0.179134 GGACATCACGAGGAGTTCCG 60.179 60.000 0.00 0.00 42.08 4.30
2881 5801 0.179134 CGGACATCACGAGGAGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
2882 5802 0.179134 CCGGACATCACGAGGAGTTC 60.179 60.000 0.00 0.00 0.00 3.01
2883 5803 1.605058 CCCGGACATCACGAGGAGTT 61.605 60.000 0.73 0.00 0.00 3.01
2884 5804 2.052690 CCCGGACATCACGAGGAGT 61.053 63.158 0.73 0.00 0.00 3.85
2885 5805 1.109920 ATCCCGGACATCACGAGGAG 61.110 60.000 0.73 0.00 35.34 3.69
2886 5806 1.076265 ATCCCGGACATCACGAGGA 60.076 57.895 0.73 0.00 35.96 3.71
2887 5807 1.109920 AGATCCCGGACATCACGAGG 61.110 60.000 0.73 0.00 0.00 4.63
2888 5808 0.312416 GAGATCCCGGACATCACGAG 59.688 60.000 0.73 0.00 0.00 4.18
2889 5809 0.395173 TGAGATCCCGGACATCACGA 60.395 55.000 0.73 0.00 0.00 4.35
2890 5810 0.676184 ATGAGATCCCGGACATCACG 59.324 55.000 0.73 0.00 0.00 4.35
2891 5811 1.001406 GGATGAGATCCCGGACATCAC 59.999 57.143 0.73 3.31 43.88 3.06
2892 5812 1.342074 GGATGAGATCCCGGACATCA 58.658 55.000 0.73 10.97 43.88 3.07
2901 5821 0.470080 TGGAGTCCCGGATGAGATCC 60.470 60.000 0.73 4.00 46.22 3.36
2902 5822 1.414158 TTGGAGTCCCGGATGAGATC 58.586 55.000 0.73 0.00 34.29 2.75
2903 5823 1.486726 GTTTGGAGTCCCGGATGAGAT 59.513 52.381 0.73 0.00 34.29 2.75
2904 5824 0.902531 GTTTGGAGTCCCGGATGAGA 59.097 55.000 0.73 0.00 34.29 3.27
2905 5825 0.613260 TGTTTGGAGTCCCGGATGAG 59.387 55.000 0.73 0.00 34.29 2.90
2906 5826 1.060729 TTGTTTGGAGTCCCGGATGA 58.939 50.000 0.73 0.00 34.29 2.92
2907 5827 1.165270 GTTGTTTGGAGTCCCGGATG 58.835 55.000 0.73 0.00 34.29 3.51
2908 5828 0.037734 GGTTGTTTGGAGTCCCGGAT 59.962 55.000 0.73 0.00 34.29 4.18
2909 5829 1.057851 AGGTTGTTTGGAGTCCCGGA 61.058 55.000 0.73 0.00 34.29 5.14
2910 5830 0.179001 AAGGTTGTTTGGAGTCCCGG 60.179 55.000 6.74 0.00 34.29 5.73
2911 5831 1.235724 GAAGGTTGTTTGGAGTCCCG 58.764 55.000 6.74 0.00 34.29 5.14
2912 5832 1.235724 CGAAGGTTGTTTGGAGTCCC 58.764 55.000 6.74 0.00 0.00 4.46
2927 5847 1.651987 ATTGTATGTGGTCGCCGAAG 58.348 50.000 0.00 0.00 0.00 3.79
2928 5848 2.102070 AATTGTATGTGGTCGCCGAA 57.898 45.000 0.00 0.00 0.00 4.30
2929 5849 2.004017 GAAATTGTATGTGGTCGCCGA 58.996 47.619 0.00 0.00 0.00 5.54
2930 5850 1.063469 GGAAATTGTATGTGGTCGCCG 59.937 52.381 0.00 0.00 0.00 6.46
2931 5851 1.404035 GGGAAATTGTATGTGGTCGCC 59.596 52.381 0.00 0.00 0.00 5.54
2932 5852 2.088423 TGGGAAATTGTATGTGGTCGC 58.912 47.619 0.00 0.00 0.00 5.19
2933 5853 5.355630 TGTTATGGGAAATTGTATGTGGTCG 59.644 40.000 0.00 0.00 0.00 4.79
2934 5854 6.767524 TGTTATGGGAAATTGTATGTGGTC 57.232 37.500 0.00 0.00 0.00 4.02
2935 5855 6.723977 AGTTGTTATGGGAAATTGTATGTGGT 59.276 34.615 0.00 0.00 0.00 4.16
2936 5856 7.122650 AGAGTTGTTATGGGAAATTGTATGTGG 59.877 37.037 0.00 0.00 0.00 4.17
2937 5857 8.055279 AGAGTTGTTATGGGAAATTGTATGTG 57.945 34.615 0.00 0.00 0.00 3.21
2938 5858 9.396022 CTAGAGTTGTTATGGGAAATTGTATGT 57.604 33.333 0.00 0.00 0.00 2.29
2939 5859 8.345565 GCTAGAGTTGTTATGGGAAATTGTATG 58.654 37.037 0.00 0.00 0.00 2.39
2940 5860 7.226720 CGCTAGAGTTGTTATGGGAAATTGTAT 59.773 37.037 0.00 0.00 0.00 2.29
2941 5861 6.537301 CGCTAGAGTTGTTATGGGAAATTGTA 59.463 38.462 0.00 0.00 0.00 2.41
2942 5862 5.354234 CGCTAGAGTTGTTATGGGAAATTGT 59.646 40.000 0.00 0.00 0.00 2.71
2943 5863 5.354234 ACGCTAGAGTTGTTATGGGAAATTG 59.646 40.000 0.00 0.00 0.00 2.32
2944 5864 5.497474 ACGCTAGAGTTGTTATGGGAAATT 58.503 37.500 0.00 0.00 0.00 1.82
2945 5865 5.099042 ACGCTAGAGTTGTTATGGGAAAT 57.901 39.130 0.00 0.00 0.00 2.17
2946 5866 4.020928 TGACGCTAGAGTTGTTATGGGAAA 60.021 41.667 0.00 0.00 0.00 3.13
2947 5867 3.512329 TGACGCTAGAGTTGTTATGGGAA 59.488 43.478 0.00 0.00 0.00 3.97
2948 5868 3.093814 TGACGCTAGAGTTGTTATGGGA 58.906 45.455 0.00 0.00 0.00 4.37
2949 5869 3.448686 CTGACGCTAGAGTTGTTATGGG 58.551 50.000 0.00 0.00 0.00 4.00
2950 5870 2.860735 GCTGACGCTAGAGTTGTTATGG 59.139 50.000 0.00 0.00 0.00 2.74
2951 5871 2.531912 CGCTGACGCTAGAGTTGTTATG 59.468 50.000 0.00 0.00 0.00 1.90
2952 5872 2.422479 TCGCTGACGCTAGAGTTGTTAT 59.578 45.455 0.00 0.00 39.84 1.89
2953 5873 1.808343 TCGCTGACGCTAGAGTTGTTA 59.192 47.619 0.00 0.00 39.84 2.41
2954 5874 0.596577 TCGCTGACGCTAGAGTTGTT 59.403 50.000 0.00 0.00 39.84 2.83
2955 5875 0.596577 TTCGCTGACGCTAGAGTTGT 59.403 50.000 0.00 0.00 39.84 3.32
2956 5876 0.985549 GTTCGCTGACGCTAGAGTTG 59.014 55.000 0.00 0.00 39.84 3.16
2957 5877 0.109226 GGTTCGCTGACGCTAGAGTT 60.109 55.000 0.00 0.00 39.84 3.01
2958 5878 0.961358 AGGTTCGCTGACGCTAGAGT 60.961 55.000 0.00 0.00 39.84 3.24
2959 5879 0.171455 AAGGTTCGCTGACGCTAGAG 59.829 55.000 0.00 0.00 39.84 2.43
2960 5880 1.456296 TAAGGTTCGCTGACGCTAGA 58.544 50.000 0.00 0.00 39.84 2.43
2961 5881 2.186076 CTTAAGGTTCGCTGACGCTAG 58.814 52.381 0.00 0.00 39.84 3.42
2962 5882 1.542915 ACTTAAGGTTCGCTGACGCTA 59.457 47.619 7.53 0.00 39.84 4.26
2963 5883 0.317479 ACTTAAGGTTCGCTGACGCT 59.683 50.000 7.53 0.00 39.84 5.07
2964 5884 0.438830 CACTTAAGGTTCGCTGACGC 59.561 55.000 7.53 0.00 39.84 5.19
2965 5885 1.455786 CACACTTAAGGTTCGCTGACG 59.544 52.381 7.53 0.00 42.01 4.35
2966 5886 2.480845 ACACACTTAAGGTTCGCTGAC 58.519 47.619 7.53 0.00 0.00 3.51
2967 5887 2.902705 ACACACTTAAGGTTCGCTGA 57.097 45.000 7.53 0.00 0.00 4.26
2968 5888 3.673809 GTCTACACACTTAAGGTTCGCTG 59.326 47.826 7.53 0.00 0.00 5.18
2969 5889 3.305881 GGTCTACACACTTAAGGTTCGCT 60.306 47.826 7.53 0.00 0.00 4.93
2970 5890 2.991866 GGTCTACACACTTAAGGTTCGC 59.008 50.000 7.53 0.00 0.00 4.70
2971 5891 3.257624 AGGGTCTACACACTTAAGGTTCG 59.742 47.826 7.53 0.00 28.53 3.95
2972 5892 4.886496 AGGGTCTACACACTTAAGGTTC 57.114 45.455 7.53 0.00 28.53 3.62
2973 5893 5.189145 CCATAGGGTCTACACACTTAAGGTT 59.811 44.000 7.53 0.00 37.49 3.50
2974 5894 4.715297 CCATAGGGTCTACACACTTAAGGT 59.285 45.833 7.53 0.00 37.49 3.50
2975 5895 4.101119 CCCATAGGGTCTACACACTTAAGG 59.899 50.000 7.53 0.00 37.49 2.69
2976 5896 5.277857 CCCATAGGGTCTACACACTTAAG 57.722 47.826 0.00 0.00 37.49 1.85
2998 5918 1.327303 TGTCTGCATGGTTCCCAAAC 58.673 50.000 0.00 0.00 36.95 2.93
2999 5919 1.894466 CATGTCTGCATGGTTCCCAAA 59.106 47.619 0.00 0.00 46.47 3.28
3000 5920 1.548081 CATGTCTGCATGGTTCCCAA 58.452 50.000 0.00 0.00 46.47 4.12
3001 5921 3.269578 CATGTCTGCATGGTTCCCA 57.730 52.632 0.00 0.00 46.47 4.37
3009 5929 0.176680 GGTCTCGGTCATGTCTGCAT 59.823 55.000 0.00 0.00 35.32 3.96
3010 5930 0.900182 AGGTCTCGGTCATGTCTGCA 60.900 55.000 0.00 0.00 0.00 4.41
3011 5931 0.179124 GAGGTCTCGGTCATGTCTGC 60.179 60.000 0.00 0.00 0.00 4.26
3012 5932 1.403679 GAGAGGTCTCGGTCATGTCTG 59.596 57.143 0.00 0.00 32.78 3.51
3013 5933 1.757682 GAGAGGTCTCGGTCATGTCT 58.242 55.000 0.00 0.00 32.78 3.41
3024 5944 0.261991 TATTGGCCGGAGAGAGGTCT 59.738 55.000 5.05 0.00 33.78 3.85
3025 5945 1.120530 TTATTGGCCGGAGAGAGGTC 58.879 55.000 5.05 0.00 0.00 3.85
3026 5946 0.831307 GTTATTGGCCGGAGAGAGGT 59.169 55.000 5.05 0.00 0.00 3.85
3027 5947 0.106894 GGTTATTGGCCGGAGAGAGG 59.893 60.000 5.05 0.00 0.00 3.69
3028 5948 0.830648 TGGTTATTGGCCGGAGAGAG 59.169 55.000 5.05 0.00 0.00 3.20
3029 5949 1.065709 GTTGGTTATTGGCCGGAGAGA 60.066 52.381 5.05 0.00 0.00 3.10
3030 5950 1.339631 TGTTGGTTATTGGCCGGAGAG 60.340 52.381 5.05 0.00 0.00 3.20
3031 5951 0.693622 TGTTGGTTATTGGCCGGAGA 59.306 50.000 5.05 0.00 0.00 3.71
3032 5952 1.094785 CTGTTGGTTATTGGCCGGAG 58.905 55.000 5.05 0.00 0.00 4.63
3033 5953 0.963355 GCTGTTGGTTATTGGCCGGA 60.963 55.000 5.05 0.00 0.00 5.14
3034 5954 1.510844 GCTGTTGGTTATTGGCCGG 59.489 57.895 0.00 0.00 0.00 6.13
3035 5955 1.136565 CGCTGTTGGTTATTGGCCG 59.863 57.895 0.00 0.00 0.00 6.13
3036 5956 1.510844 CCGCTGTTGGTTATTGGCC 59.489 57.895 0.00 0.00 0.00 5.36
3037 5957 0.963355 TCCCGCTGTTGGTTATTGGC 60.963 55.000 0.00 0.00 0.00 4.52
3038 5958 1.676006 GATCCCGCTGTTGGTTATTGG 59.324 52.381 0.00 0.00 0.00 3.16
3039 5959 2.355756 CAGATCCCGCTGTTGGTTATTG 59.644 50.000 0.00 0.00 0.00 1.90
3040 5960 2.643551 CAGATCCCGCTGTTGGTTATT 58.356 47.619 0.00 0.00 0.00 1.40
3041 5961 1.134098 CCAGATCCCGCTGTTGGTTAT 60.134 52.381 0.00 0.00 34.06 1.89
3042 5962 0.251916 CCAGATCCCGCTGTTGGTTA 59.748 55.000 0.00 0.00 34.06 2.85
3043 5963 1.002134 CCAGATCCCGCTGTTGGTT 60.002 57.895 0.00 0.00 34.06 3.67
3044 5964 1.274703 ATCCAGATCCCGCTGTTGGT 61.275 55.000 0.00 0.00 34.06 3.67
3045 5965 0.758734 TATCCAGATCCCGCTGTTGG 59.241 55.000 0.00 0.00 34.06 3.77
3046 5966 1.541233 GGTATCCAGATCCCGCTGTTG 60.541 57.143 0.00 0.00 34.06 3.33
3047 5967 0.759346 GGTATCCAGATCCCGCTGTT 59.241 55.000 0.00 0.00 34.06 3.16
3048 5968 1.122019 GGGTATCCAGATCCCGCTGT 61.122 60.000 0.00 0.00 34.06 4.40
3049 5969 1.121407 TGGGTATCCAGATCCCGCTG 61.121 60.000 0.00 0.00 43.75 5.18
3050 5970 1.235989 TGGGTATCCAGATCCCGCT 59.764 57.895 0.00 0.00 43.75 5.52
3051 5971 3.885814 TGGGTATCCAGATCCCGC 58.114 61.111 0.00 1.12 43.75 6.13
3065 5985 1.000739 ATGTGGGAGCCAACATGGG 59.999 57.895 8.73 0.00 38.19 4.00
3066 5986 0.612732 ACATGTGGGAGCCAACATGG 60.613 55.000 30.67 18.01 42.06 3.66
3067 5987 1.203052 GAACATGTGGGAGCCAACATG 59.797 52.381 27.61 27.61 42.70 3.21
3068 5988 1.549203 GAACATGTGGGAGCCAACAT 58.451 50.000 3.63 3.63 34.18 2.71
3069 5989 0.539438 GGAACATGTGGGAGCCAACA 60.539 55.000 0.00 0.00 34.18 3.33
3070 5990 0.539438 TGGAACATGTGGGAGCCAAC 60.539 55.000 0.00 0.00 34.18 3.77
3071 5991 0.187117 TTGGAACATGTGGGAGCCAA 59.813 50.000 0.00 6.22 39.30 4.52
3072 5992 0.251297 CTTGGAACATGTGGGAGCCA 60.251 55.000 0.00 0.00 39.30 4.75
3073 5993 0.038166 TCTTGGAACATGTGGGAGCC 59.962 55.000 0.00 0.00 39.30 4.70
3074 5994 1.168714 GTCTTGGAACATGTGGGAGC 58.831 55.000 0.00 0.00 39.30 4.70
3075 5995 1.001974 TCGTCTTGGAACATGTGGGAG 59.998 52.381 0.00 0.00 39.30 4.30
3076 5996 1.052617 TCGTCTTGGAACATGTGGGA 58.947 50.000 0.00 0.00 39.30 4.37
3077 5997 2.009774 GATCGTCTTGGAACATGTGGG 58.990 52.381 0.00 0.00 39.30 4.61
3078 5998 2.932614 GAGATCGTCTTGGAACATGTGG 59.067 50.000 0.00 0.00 39.30 4.17
3079 5999 3.588955 TGAGATCGTCTTGGAACATGTG 58.411 45.455 0.00 0.00 39.30 3.21
3080 6000 3.961480 TGAGATCGTCTTGGAACATGT 57.039 42.857 0.00 0.00 39.30 3.21
3094 6014 2.034685 TCGTGGTTCATCCGATGAGATC 59.965 50.000 10.91 6.49 40.94 2.75
3095 6015 2.031870 TCGTGGTTCATCCGATGAGAT 58.968 47.619 10.91 0.00 40.94 2.75
3096 6016 1.470051 TCGTGGTTCATCCGATGAGA 58.530 50.000 10.91 2.65 40.94 3.27
3097 6017 2.515926 ATCGTGGTTCATCCGATGAG 57.484 50.000 10.91 0.32 40.94 2.90
3100 6020 1.536072 CGACATCGTGGTTCATCCGAT 60.536 52.381 0.00 0.00 41.64 4.18
3101 6021 0.179148 CGACATCGTGGTTCATCCGA 60.179 55.000 0.00 0.00 39.52 4.55
3102 6022 1.145759 CCGACATCGTGGTTCATCCG 61.146 60.000 0.00 0.00 36.28 4.18
3103 6023 0.810031 CCCGACATCGTGGTTCATCC 60.810 60.000 0.00 0.00 37.74 3.51
3104 6024 0.810031 CCCCGACATCGTGGTTCATC 60.810 60.000 0.00 0.00 37.74 2.92
3105 6025 1.220749 CCCCGACATCGTGGTTCAT 59.779 57.895 0.00 0.00 37.74 2.57
3106 6026 1.261938 ATCCCCGACATCGTGGTTCA 61.262 55.000 2.68 0.00 38.09 3.18
3107 6027 0.107848 AATCCCCGACATCGTGGTTC 60.108 55.000 2.68 0.00 38.09 3.62
3108 6028 0.107848 GAATCCCCGACATCGTGGTT 60.108 55.000 2.68 0.00 38.09 3.67
3109 6029 1.261938 TGAATCCCCGACATCGTGGT 61.262 55.000 2.68 0.00 38.09 4.16
3110 6030 0.107897 TTGAATCCCCGACATCGTGG 60.108 55.000 0.00 0.00 38.26 4.94
3111 6031 1.867233 GATTGAATCCCCGACATCGTG 59.133 52.381 0.00 0.00 37.74 4.35
3112 6032 1.484653 TGATTGAATCCCCGACATCGT 59.515 47.619 2.26 0.00 37.74 3.73
3113 6033 2.238942 TGATTGAATCCCCGACATCG 57.761 50.000 2.26 0.00 39.44 3.84
3114 6034 4.756084 GATTGATTGAATCCCCGACATC 57.244 45.455 2.26 0.00 35.29 3.06
3123 6043 8.237267 GGAATTGTATACGGGATTGATTGAATC 58.763 37.037 0.00 0.00 40.00 2.52
3124 6044 7.176690 GGGAATTGTATACGGGATTGATTGAAT 59.823 37.037 0.00 0.00 0.00 2.57
3125 6045 6.488683 GGGAATTGTATACGGGATTGATTGAA 59.511 38.462 0.00 0.00 0.00 2.69
3126 6046 6.001460 GGGAATTGTATACGGGATTGATTGA 58.999 40.000 0.00 0.00 0.00 2.57
3127 6047 6.003950 AGGGAATTGTATACGGGATTGATTG 58.996 40.000 0.00 0.00 0.00 2.67
3128 6048 6.200878 AGGGAATTGTATACGGGATTGATT 57.799 37.500 0.00 0.00 0.00 2.57
3129 6049 5.843019 AGGGAATTGTATACGGGATTGAT 57.157 39.130 0.00 0.00 0.00 2.57
3130 6050 5.640158 AAGGGAATTGTATACGGGATTGA 57.360 39.130 0.00 0.00 0.00 2.57
3131 6051 5.592688 ACAAAGGGAATTGTATACGGGATTG 59.407 40.000 0.00 0.00 41.56 2.67
3132 6052 5.762279 ACAAAGGGAATTGTATACGGGATT 58.238 37.500 0.00 0.00 41.56 3.01
3133 6053 5.132144 AGACAAAGGGAATTGTATACGGGAT 59.868 40.000 0.00 0.00 43.31 3.85
3134 6054 4.472108 AGACAAAGGGAATTGTATACGGGA 59.528 41.667 0.00 0.00 43.31 5.14
3135 6055 4.777463 AGACAAAGGGAATTGTATACGGG 58.223 43.478 0.00 0.00 43.31 5.28
3136 6056 6.839820 GTAGACAAAGGGAATTGTATACGG 57.160 41.667 8.60 0.00 43.71 4.02
3139 6059 5.426185 ACCGGTAGACAAAGGGAATTGTATA 59.574 40.000 4.49 0.00 43.31 1.47
3140 6060 4.226620 ACCGGTAGACAAAGGGAATTGTAT 59.773 41.667 4.49 0.00 43.31 2.29
3141 6061 3.583966 ACCGGTAGACAAAGGGAATTGTA 59.416 43.478 4.49 0.00 43.31 2.41
3142 6062 2.374170 ACCGGTAGACAAAGGGAATTGT 59.626 45.455 4.49 0.00 45.82 2.71
3143 6063 3.067684 ACCGGTAGACAAAGGGAATTG 57.932 47.619 4.49 0.00 36.37 2.32
3144 6064 4.226620 ACATACCGGTAGACAAAGGGAATT 59.773 41.667 20.91 0.00 0.00 2.17
3145 6065 3.778629 ACATACCGGTAGACAAAGGGAAT 59.221 43.478 20.91 0.00 0.00 3.01
3146 6066 3.175594 ACATACCGGTAGACAAAGGGAA 58.824 45.455 20.91 0.00 0.00 3.97
3147 6067 2.823959 ACATACCGGTAGACAAAGGGA 58.176 47.619 20.91 0.00 0.00 4.20
3148 6068 3.622166 AACATACCGGTAGACAAAGGG 57.378 47.619 20.91 4.43 0.00 3.95
3149 6069 5.334724 AGTAACATACCGGTAGACAAAGG 57.665 43.478 20.91 1.15 0.00 3.11
3150 6070 5.063060 GCAAGTAACATACCGGTAGACAAAG 59.937 44.000 20.91 7.78 0.00 2.77
3151 6071 4.931002 GCAAGTAACATACCGGTAGACAAA 59.069 41.667 20.91 0.00 0.00 2.83
3152 6072 4.497300 GCAAGTAACATACCGGTAGACAA 58.503 43.478 20.91 0.00 0.00 3.18
3153 6073 3.119029 GGCAAGTAACATACCGGTAGACA 60.119 47.826 20.91 0.00 0.00 3.41
3154 6074 3.451526 GGCAAGTAACATACCGGTAGAC 58.548 50.000 20.91 14.28 0.00 2.59
3155 6075 2.431782 GGGCAAGTAACATACCGGTAGA 59.568 50.000 20.91 0.00 0.00 2.59
3156 6076 2.800629 CGGGCAAGTAACATACCGGTAG 60.801 54.545 20.91 14.04 37.80 3.18
3157 6077 1.136695 CGGGCAAGTAACATACCGGTA 59.863 52.381 18.46 18.46 37.80 4.02
3158 6078 0.108041 CGGGCAAGTAACATACCGGT 60.108 55.000 13.98 13.98 37.80 5.28
3159 6079 0.176219 TCGGGCAAGTAACATACCGG 59.824 55.000 0.00 0.00 41.49 5.28
3160 6080 1.135527 TCTCGGGCAAGTAACATACCG 59.864 52.381 0.00 0.00 42.45 4.02
3161 6081 2.973694 TCTCGGGCAAGTAACATACC 57.026 50.000 0.00 0.00 0.00 2.73
3162 6082 3.489785 CGAATCTCGGGCAAGTAACATAC 59.510 47.826 0.00 0.00 36.00 2.39
3163 6083 3.382227 TCGAATCTCGGGCAAGTAACATA 59.618 43.478 0.00 0.00 40.88 2.29
3164 6084 2.167693 TCGAATCTCGGGCAAGTAACAT 59.832 45.455 0.00 0.00 40.88 2.71
3165 6085 1.546923 TCGAATCTCGGGCAAGTAACA 59.453 47.619 0.00 0.00 40.88 2.41
3166 6086 2.288961 TCGAATCTCGGGCAAGTAAC 57.711 50.000 0.00 0.00 40.88 2.50
3167 6087 2.429250 TGATCGAATCTCGGGCAAGTAA 59.571 45.455 0.00 0.00 40.88 2.24
3168 6088 2.028876 TGATCGAATCTCGGGCAAGTA 58.971 47.619 0.00 0.00 40.88 2.24
3169 6089 0.824109 TGATCGAATCTCGGGCAAGT 59.176 50.000 0.00 0.00 40.88 3.16
3170 6090 2.064762 GATGATCGAATCTCGGGCAAG 58.935 52.381 0.00 0.00 40.88 4.01
3171 6091 1.602920 CGATGATCGAATCTCGGGCAA 60.603 52.381 9.62 0.00 43.74 4.52
3172 6092 0.039165 CGATGATCGAATCTCGGGCA 60.039 55.000 9.62 0.00 43.74 5.36
3173 6093 0.734253 CCGATGATCGAATCTCGGGC 60.734 60.000 17.52 0.00 43.74 6.13
3174 6094 0.598562 ACCGATGATCGAATCTCGGG 59.401 55.000 26.41 12.15 45.67 5.14
3175 6095 3.487711 GGATACCGATGATCGAATCTCGG 60.488 52.174 23.30 23.30 46.23 4.63
3176 6096 3.686128 GGATACCGATGATCGAATCTCG 58.314 50.000 17.52 0.39 43.74 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.