Multiple sequence alignment - TraesCS6D01G041100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G041100 chr6D 100.000 2720 0 0 1 2720 16771310 16774029 0.000000e+00 5024
1 TraesCS6D01G041100 chr6A 95.734 2180 61 12 563 2720 17601165 17603334 0.000000e+00 3482
2 TraesCS6D01G041100 chr6B 91.214 1343 101 7 563 1899 29757891 29756560 0.000000e+00 1810
3 TraesCS6D01G041100 chr6B 92.662 954 30 10 777 1730 29418502 29419415 0.000000e+00 1338
4 TraesCS6D01G041100 chr6B 96.011 752 26 4 1724 2473 29426378 29427127 0.000000e+00 1219
5 TraesCS6D01G041100 chr6B 88.732 639 47 10 2087 2720 29756449 29755831 0.000000e+00 758
6 TraesCS6D01G041100 chr6B 88.339 566 28 16 3 568 29758603 29758076 0.000000e+00 645
7 TraesCS6D01G041100 chr6B 97.222 288 6 2 279 565 29417794 29418080 1.130000e-133 486
8 TraesCS6D01G041100 chr6B 92.140 229 9 2 563 790 29418266 29418486 5.650000e-82 315
9 TraesCS6D01G041100 chr7A 97.213 287 7 1 1946 2231 721828021 721828307 4.070000e-133 484
10 TraesCS6D01G041100 chr4D 92.486 173 12 1 1966 2137 135057796 135057968 2.090000e-61 246
11 TraesCS6D01G041100 chr3D 92.486 173 12 1 1966 2137 202618330 202618158 2.090000e-61 246
12 TraesCS6D01G041100 chr2D 92.486 173 12 1 1966 2137 635056366 635056194 2.090000e-61 246
13 TraesCS6D01G041100 chr2B 92.486 173 12 1 1966 2137 526481026 526481198 2.090000e-61 246
14 TraesCS6D01G041100 chr3B 91.954 174 13 1 1966 2138 5095631 5095804 2.710000e-60 243
15 TraesCS6D01G041100 chrUn 91.908 173 13 1 1966 2137 45127243 45127071 9.730000e-60 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G041100 chr6D 16771310 16774029 2719 False 5024 5024 100.000000 1 2720 1 chr6D.!!$F1 2719
1 TraesCS6D01G041100 chr6A 17601165 17603334 2169 False 3482 3482 95.734000 563 2720 1 chr6A.!!$F1 2157
2 TraesCS6D01G041100 chr6B 29426378 29427127 749 False 1219 1219 96.011000 1724 2473 1 chr6B.!!$F1 749
3 TraesCS6D01G041100 chr6B 29755831 29758603 2772 True 1071 1810 89.428333 3 2720 3 chr6B.!!$R1 2717
4 TraesCS6D01G041100 chr6B 29417794 29419415 1621 False 713 1338 94.008000 279 1730 3 chr6B.!!$F2 1451

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.108424 GGAGTCAGAACTGCGAGCAT 60.108 55.0 0.0 0.0 35.28 3.79 F
654 847 0.463654 TGTCAGCCTTGCGTTGTTCT 60.464 50.0 0.0 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1199 1421 0.453793 TCCGCTGTTGTTGTTGTTGG 59.546 50.0 0.0 0.0 0.0 3.77 R
2448 2709 0.674895 CCACTGCCTTGAGTACTGCC 60.675 60.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.557898 GCATCCCTTCTTCACTGAACTGA 60.558 47.826 0.00 0.00 0.00 3.41
48 49 6.042144 GCAAGTGTATGCAGAGAGATTAAC 57.958 41.667 0.00 0.00 45.70 2.01
49 50 5.814705 GCAAGTGTATGCAGAGAGATTAACT 59.185 40.000 0.00 0.00 45.70 2.24
50 51 6.019156 GCAAGTGTATGCAGAGAGATTAACTC 60.019 42.308 0.00 0.00 45.70 3.01
66 67 5.885230 TTAACTCATGCCTTCAGTTCATG 57.115 39.130 0.38 0.00 39.02 3.07
67 68 2.719739 ACTCATGCCTTCAGTTCATGG 58.280 47.619 0.00 0.00 38.41 3.66
75 76 3.367703 GCCTTCAGTTCATGGGTCAAATG 60.368 47.826 0.00 0.00 0.00 2.32
91 92 7.088272 GGGTCAAATGTTACTACACCAAAATC 58.912 38.462 0.00 0.00 37.03 2.17
92 93 7.039993 GGGTCAAATGTTACTACACCAAAATCT 60.040 37.037 0.00 0.00 37.03 2.40
93 94 8.021396 GGTCAAATGTTACTACACCAAAATCTC 58.979 37.037 0.00 0.00 37.03 2.75
94 95 8.784043 GTCAAATGTTACTACACCAAAATCTCT 58.216 33.333 0.00 0.00 37.03 3.10
95 96 9.349713 TCAAATGTTACTACACCAAAATCTCTT 57.650 29.630 0.00 0.00 37.03 2.85
96 97 9.965824 CAAATGTTACTACACCAAAATCTCTTT 57.034 29.630 0.00 0.00 37.03 2.52
103 104 8.567285 ACTACACCAAAATCTCTTTATCTTGG 57.433 34.615 0.00 0.00 0.00 3.61
104 105 6.840780 ACACCAAAATCTCTTTATCTTGGG 57.159 37.500 3.88 0.00 32.93 4.12
105 106 6.552008 ACACCAAAATCTCTTTATCTTGGGA 58.448 36.000 3.88 0.00 32.93 4.37
106 107 6.660949 ACACCAAAATCTCTTTATCTTGGGAG 59.339 38.462 3.88 0.00 32.93 4.30
107 108 6.660949 CACCAAAATCTCTTTATCTTGGGAGT 59.339 38.462 3.88 0.00 32.93 3.85
108 109 6.887002 ACCAAAATCTCTTTATCTTGGGAGTC 59.113 38.462 3.88 0.00 32.93 3.36
109 110 6.886459 CCAAAATCTCTTTATCTTGGGAGTCA 59.114 38.462 0.00 0.00 0.00 3.41
110 111 7.066766 CCAAAATCTCTTTATCTTGGGAGTCAG 59.933 40.741 0.00 0.00 0.00 3.51
111 112 7.502060 AAATCTCTTTATCTTGGGAGTCAGA 57.498 36.000 0.00 0.00 0.00 3.27
112 113 7.502060 AATCTCTTTATCTTGGGAGTCAGAA 57.498 36.000 0.00 0.00 0.00 3.02
113 114 6.287589 TCTCTTTATCTTGGGAGTCAGAAC 57.712 41.667 0.00 0.00 0.00 3.01
122 123 0.108424 GGAGTCAGAACTGCGAGCAT 60.108 55.000 0.00 0.00 35.28 3.79
127 128 1.756538 TCAGAACTGCGAGCATATGGA 59.243 47.619 4.56 0.00 0.00 3.41
128 129 2.366590 TCAGAACTGCGAGCATATGGAT 59.633 45.455 4.56 0.00 0.00 3.41
129 130 3.573967 TCAGAACTGCGAGCATATGGATA 59.426 43.478 4.56 0.00 0.00 2.59
130 131 4.221482 TCAGAACTGCGAGCATATGGATAT 59.779 41.667 4.56 0.00 0.00 1.63
155 156 5.393068 AGCATAGGAAAATGGGATTCTGA 57.607 39.130 0.00 0.00 0.00 3.27
158 159 5.009410 GCATAGGAAAATGGGATTCTGACTG 59.991 44.000 0.00 0.00 0.00 3.51
201 202 0.952497 GCAGCTAGCAGACAAGCACA 60.952 55.000 18.83 0.00 44.79 4.57
202 203 1.735386 CAGCTAGCAGACAAGCACAT 58.265 50.000 18.83 0.00 41.32 3.21
203 204 1.397343 CAGCTAGCAGACAAGCACATG 59.603 52.381 18.83 0.00 41.32 3.21
204 205 1.002888 AGCTAGCAGACAAGCACATGT 59.997 47.619 18.83 0.00 41.32 3.21
205 206 1.808945 GCTAGCAGACAAGCACATGTT 59.191 47.619 10.63 0.00 38.63 2.71
209 210 3.709987 AGCAGACAAGCACATGTTTTTC 58.290 40.909 0.00 0.00 36.85 2.29
267 268 2.355108 GGTGTTGCAGCTCTAGGATTGA 60.355 50.000 1.17 0.00 0.00 2.57
274 275 3.069300 GCAGCTCTAGGATTGATGTGAGA 59.931 47.826 0.00 0.00 0.00 3.27
275 276 4.262549 GCAGCTCTAGGATTGATGTGAGAT 60.263 45.833 0.00 0.00 0.00 2.75
276 277 5.742546 GCAGCTCTAGGATTGATGTGAGATT 60.743 44.000 0.00 0.00 0.00 2.40
330 331 2.428925 GCACATCCCTGGCCATTGG 61.429 63.158 5.51 10.95 0.00 3.16
428 429 2.738846 CACCAACTTGATCTTGTCTCGG 59.261 50.000 0.00 0.00 0.00 4.63
463 464 1.528586 CAGTCCTGAGTCAAACTTGCG 59.471 52.381 5.33 0.00 0.00 4.85
504 506 3.149196 TCAGCTCAAACTTTGGTCATCC 58.851 45.455 1.62 0.00 0.00 3.51
606 799 9.515226 AAAAGAACAGCACTAATCCTAAACATA 57.485 29.630 0.00 0.00 0.00 2.29
639 832 7.827236 CCAAATTCCCAAGTAGTAGTAATGTCA 59.173 37.037 0.00 0.00 0.00 3.58
651 844 1.535462 GTAATGTCAGCCTTGCGTTGT 59.465 47.619 0.00 0.00 0.00 3.32
652 845 1.032014 AATGTCAGCCTTGCGTTGTT 58.968 45.000 0.00 0.00 0.00 2.83
653 846 0.593128 ATGTCAGCCTTGCGTTGTTC 59.407 50.000 0.00 0.00 0.00 3.18
654 847 0.463654 TGTCAGCCTTGCGTTGTTCT 60.464 50.000 0.00 0.00 0.00 3.01
655 848 1.202592 TGTCAGCCTTGCGTTGTTCTA 60.203 47.619 0.00 0.00 0.00 2.10
656 849 1.871039 GTCAGCCTTGCGTTGTTCTAA 59.129 47.619 0.00 0.00 0.00 2.10
657 850 2.289547 GTCAGCCTTGCGTTGTTCTAAA 59.710 45.455 0.00 0.00 0.00 1.85
658 851 2.289547 TCAGCCTTGCGTTGTTCTAAAC 59.710 45.455 0.00 0.00 0.00 2.01
729 922 4.884164 GCCTTACCTGCACTAATTCATCTT 59.116 41.667 0.00 0.00 0.00 2.40
874 1096 5.479027 ACAACTCCCCTTAACGCAATAAAAT 59.521 36.000 0.00 0.00 0.00 1.82
984 1206 9.799106 TCATTTTCTAGAACTCCAGATCTTTTT 57.201 29.630 4.18 0.00 0.00 1.94
1026 1248 4.647564 AGATGAGAGGAAAAGAGCCAAA 57.352 40.909 0.00 0.00 0.00 3.28
1176 1398 1.076533 GTACACCGTCGCTGGACATG 61.077 60.000 0.00 0.00 43.61 3.21
1260 1497 1.080705 CGTCGACCGCTTCCTCTTT 60.081 57.895 10.58 0.00 0.00 2.52
1292 1529 4.042934 TCGGTCTCTCTATATCCATGACCA 59.957 45.833 0.00 0.00 41.60 4.02
1323 1575 2.193110 CGCGCGTTTTTCGTCATCG 61.193 57.895 24.19 0.00 42.13 3.84
1324 1576 2.477346 GCGCGTTTTTCGTCATCGC 61.477 57.895 8.43 0.00 42.13 4.58
1325 1577 1.857426 CGCGTTTTTCGTCATCGCC 60.857 57.895 0.00 0.00 43.18 5.54
1326 1578 1.511254 GCGTTTTTCGTCATCGCCC 60.511 57.895 0.00 0.00 40.83 6.13
1327 1579 1.863491 CGTTTTTCGTCATCGCCCA 59.137 52.632 0.00 0.00 36.96 5.36
1328 1580 0.179225 CGTTTTTCGTCATCGCCCAG 60.179 55.000 0.00 0.00 36.96 4.45
1329 1581 0.168128 GTTTTTCGTCATCGCCCAGG 59.832 55.000 0.00 0.00 36.96 4.45
1330 1582 0.035598 TTTTTCGTCATCGCCCAGGA 59.964 50.000 0.00 0.00 36.96 3.86
1331 1583 0.672401 TTTTCGTCATCGCCCAGGAC 60.672 55.000 0.00 0.00 36.96 3.85
1333 1585 4.129737 CGTCATCGCCCAGGACGT 62.130 66.667 8.85 0.00 46.68 4.34
1334 1586 2.202756 GTCATCGCCCAGGACGTC 60.203 66.667 7.13 7.13 0.00 4.34
1335 1587 2.678580 TCATCGCCCAGGACGTCA 60.679 61.111 18.91 0.00 0.00 4.35
1336 1588 2.058001 TCATCGCCCAGGACGTCAT 61.058 57.895 18.91 7.60 0.00 3.06
1337 1589 1.592669 CATCGCCCAGGACGTCATC 60.593 63.158 18.91 0.05 0.00 2.92
1529 1781 2.236146 TGATAAAGATGCACCACGGTCT 59.764 45.455 0.00 0.00 0.00 3.85
1798 2050 5.122519 TCTATTGCATAACCTGATTCGCAA 58.877 37.500 0.00 0.00 40.90 4.85
1926 2180 6.127810 AGGATTGATTTGATTCGTCATGTG 57.872 37.500 0.00 0.00 0.00 3.21
2032 2286 7.177216 AGTCATCAAAGCCATCAACTAATTCAA 59.823 33.333 0.00 0.00 0.00 2.69
2066 2320 1.140375 CCGGTCGCCCTACACTAAC 59.860 63.158 0.00 0.00 0.00 2.34
2286 2547 9.481340 GAAAGAATTGAAGAAACAAGGCTAAAT 57.519 29.630 0.00 0.00 33.22 1.40
2392 2653 4.339530 GCAGGAGAGATAATTGGGGTTTTC 59.660 45.833 0.00 0.00 0.00 2.29
2437 2698 3.196469 TGGTTTTCACAGTTTGCATGGAA 59.804 39.130 0.00 0.00 0.00 3.53
2448 2709 1.026584 TGCATGGAATTGAGGCATCG 58.973 50.000 0.00 0.00 0.00 3.84
2650 2911 3.733337 AGATGATTTGTGGGATAGACGC 58.267 45.455 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.373169 AGTTCAGTGAAGAAGGGATGCA 59.627 45.455 5.62 0.00 0.00 3.96
1 2 2.746362 CAGTTCAGTGAAGAAGGGATGC 59.254 50.000 5.62 0.00 0.00 3.91
10 11 3.562973 ACACTTGCATCAGTTCAGTGAAG 59.437 43.478 17.08 0.00 0.00 3.02
42 43 6.459298 CCATGAACTGAAGGCATGAGTTAATC 60.459 42.308 13.69 0.00 41.35 1.75
43 44 5.359009 CCATGAACTGAAGGCATGAGTTAAT 59.641 40.000 13.69 0.00 41.35 1.40
44 45 4.701651 CCATGAACTGAAGGCATGAGTTAA 59.298 41.667 13.69 0.00 41.35 2.01
45 46 4.264253 CCATGAACTGAAGGCATGAGTTA 58.736 43.478 13.69 0.00 41.35 2.24
46 47 3.087031 CCATGAACTGAAGGCATGAGTT 58.913 45.455 13.69 0.00 41.35 3.01
47 48 2.619849 CCCATGAACTGAAGGCATGAGT 60.620 50.000 13.69 0.00 41.35 3.41
48 49 2.022195 CCCATGAACTGAAGGCATGAG 58.978 52.381 13.69 1.52 41.35 2.90
49 50 1.355381 ACCCATGAACTGAAGGCATGA 59.645 47.619 13.69 0.00 41.35 3.07
50 51 1.747355 GACCCATGAACTGAAGGCATG 59.253 52.381 0.00 0.00 39.20 4.06
54 55 3.828451 ACATTTGACCCATGAACTGAAGG 59.172 43.478 0.00 0.00 0.00 3.46
66 67 6.394025 TTTTGGTGTAGTAACATTTGACCC 57.606 37.500 0.00 0.00 38.08 4.46
67 68 7.882179 AGATTTTGGTGTAGTAACATTTGACC 58.118 34.615 0.00 0.00 38.08 4.02
91 92 6.105333 CAGTTCTGACTCCCAAGATAAAGAG 58.895 44.000 0.00 0.00 32.54 2.85
92 93 5.569630 GCAGTTCTGACTCCCAAGATAAAGA 60.570 44.000 3.84 0.00 32.54 2.52
93 94 4.633565 GCAGTTCTGACTCCCAAGATAAAG 59.366 45.833 3.84 0.00 32.54 1.85
94 95 4.579869 GCAGTTCTGACTCCCAAGATAAA 58.420 43.478 3.84 0.00 32.54 1.40
95 96 3.368427 CGCAGTTCTGACTCCCAAGATAA 60.368 47.826 3.84 0.00 32.54 1.75
96 97 2.166459 CGCAGTTCTGACTCCCAAGATA 59.834 50.000 3.84 0.00 32.54 1.98
97 98 1.066573 CGCAGTTCTGACTCCCAAGAT 60.067 52.381 3.84 0.00 32.54 2.40
98 99 0.318441 CGCAGTTCTGACTCCCAAGA 59.682 55.000 3.84 0.00 32.54 3.02
99 100 0.318441 TCGCAGTTCTGACTCCCAAG 59.682 55.000 3.84 0.00 32.54 3.61
100 101 0.318441 CTCGCAGTTCTGACTCCCAA 59.682 55.000 3.84 0.00 32.54 4.12
101 102 1.967535 CTCGCAGTTCTGACTCCCA 59.032 57.895 3.84 0.00 32.54 4.37
102 103 1.446966 GCTCGCAGTTCTGACTCCC 60.447 63.158 3.84 0.00 32.54 4.30
103 104 0.108424 ATGCTCGCAGTTCTGACTCC 60.108 55.000 3.84 0.00 32.54 3.85
104 105 2.568696 TATGCTCGCAGTTCTGACTC 57.431 50.000 3.84 0.00 32.54 3.36
105 106 2.482664 CCATATGCTCGCAGTTCTGACT 60.483 50.000 3.84 0.00 36.25 3.41
106 107 1.863454 CCATATGCTCGCAGTTCTGAC 59.137 52.381 3.84 0.00 0.00 3.51
107 108 1.756538 TCCATATGCTCGCAGTTCTGA 59.243 47.619 3.84 0.00 0.00 3.27
108 109 2.229675 TCCATATGCTCGCAGTTCTG 57.770 50.000 0.00 0.00 0.00 3.02
109 110 4.815533 ATATCCATATGCTCGCAGTTCT 57.184 40.909 0.00 0.00 0.00 3.01
110 111 6.364706 GCTATATATCCATATGCTCGCAGTTC 59.635 42.308 0.00 0.00 0.00 3.01
111 112 6.183360 TGCTATATATCCATATGCTCGCAGTT 60.183 38.462 0.00 0.00 0.00 3.16
112 113 5.302823 TGCTATATATCCATATGCTCGCAGT 59.697 40.000 0.00 0.00 0.00 4.40
113 114 5.776744 TGCTATATATCCATATGCTCGCAG 58.223 41.667 0.00 0.00 0.00 5.18
129 130 8.839745 TCAGAATCCCATTTTCCTATGCTATAT 58.160 33.333 0.00 0.00 0.00 0.86
130 131 8.103305 GTCAGAATCCCATTTTCCTATGCTATA 58.897 37.037 0.00 0.00 0.00 1.31
147 148 0.321919 TGTGCCAGCAGTCAGAATCC 60.322 55.000 0.00 0.00 0.00 3.01
158 159 4.129737 CTGCTGCCATGTGCCAGC 62.130 66.667 18.11 18.11 41.52 4.85
249 250 3.311871 CACATCAATCCTAGAGCTGCAAC 59.688 47.826 1.02 0.00 0.00 4.17
330 331 2.758736 ACAGTGGCAGACAGAGATTC 57.241 50.000 0.00 0.00 0.00 2.52
428 429 4.159321 TCAGGACTGAGATGATGAGTGAAC 59.841 45.833 0.00 0.00 34.14 3.18
463 464 5.163713 GCTGAAACCTTGAGATGGTTGATAC 60.164 44.000 0.00 0.00 45.99 2.24
504 506 0.095935 CGCAGCTGTTTCAGGATTCG 59.904 55.000 16.64 1.93 31.21 3.34
606 799 9.448587 ACTACTACTTGGGAATTTGGTCTATAT 57.551 33.333 0.00 0.00 0.00 0.86
624 817 4.440250 CGCAAGGCTGACATTACTACTACT 60.440 45.833 0.00 0.00 0.00 2.57
639 832 2.572290 AGTTTAGAACAACGCAAGGCT 58.428 42.857 0.00 0.00 46.39 4.58
652 845 9.871238 GTGAACATAGTCCATTAGAAGTTTAGA 57.129 33.333 0.00 0.00 0.00 2.10
653 846 9.877178 AGTGAACATAGTCCATTAGAAGTTTAG 57.123 33.333 0.00 0.00 0.00 1.85
654 847 9.653287 CAGTGAACATAGTCCATTAGAAGTTTA 57.347 33.333 0.00 0.00 0.00 2.01
655 848 7.119846 GCAGTGAACATAGTCCATTAGAAGTTT 59.880 37.037 0.00 0.00 0.00 2.66
656 849 6.595716 GCAGTGAACATAGTCCATTAGAAGTT 59.404 38.462 0.00 0.00 0.00 2.66
657 850 6.070538 AGCAGTGAACATAGTCCATTAGAAGT 60.071 38.462 0.00 0.00 0.00 3.01
658 851 6.257411 CAGCAGTGAACATAGTCCATTAGAAG 59.743 42.308 0.00 0.00 0.00 2.85
729 922 6.154877 TGGTTAACGGGAGAATATAACTGACA 59.845 38.462 0.00 0.00 0.00 3.58
874 1096 7.388224 TGAGTTGTAACAAAGCGATTTATGGTA 59.612 33.333 0.00 0.00 0.00 3.25
984 1206 4.714802 TCTTCCATCTCTTTTCCCGATACA 59.285 41.667 0.00 0.00 0.00 2.29
1199 1421 0.453793 TCCGCTGTTGTTGTTGTTGG 59.546 50.000 0.00 0.00 0.00 3.77
1260 1497 6.039493 GGATATAGAGAGACCGAAAGTTGTCA 59.961 42.308 0.00 0.00 33.89 3.58
1292 1529 3.467119 GCGCGTTGTCGTCGTCAT 61.467 61.111 8.43 0.00 38.24 3.06
1332 1584 3.050619 GTCGATAATGGACGTGGATGAC 58.949 50.000 0.00 0.00 0.00 3.06
1333 1585 3.364889 GTCGATAATGGACGTGGATGA 57.635 47.619 0.00 0.00 0.00 2.92
1347 1599 1.087771 TGAGCTGCGTCTCGTCGATA 61.088 55.000 0.00 0.00 35.90 2.92
1348 1600 2.399356 TGAGCTGCGTCTCGTCGAT 61.399 57.895 0.00 0.00 35.90 3.59
1378 1630 2.628178 TGACTGAGTTCGACAAGGATGT 59.372 45.455 0.00 0.00 44.25 3.06
1669 1921 1.826054 CCCAGTGCGGTTTTCCACA 60.826 57.895 0.00 0.00 40.70 4.17
1798 2050 9.661563 TGTATTCTACATTCCGTTACATTTCTT 57.338 29.630 0.00 0.00 32.89 2.52
1926 2180 6.095440 TGTGTAATAGACTACCTCCGGTTTAC 59.905 42.308 0.00 0.00 37.09 2.01
2243 2504 8.971321 CAATTCTTTCATTTCAAACGACAAGAT 58.029 29.630 0.00 0.00 0.00 2.40
2392 2653 2.691409 TTCCTTTGCCTGTATCCTCG 57.309 50.000 0.00 0.00 0.00 4.63
2437 2698 0.833287 AGTACTGCCGATGCCTCAAT 59.167 50.000 0.00 0.00 36.33 2.57
2448 2709 0.674895 CCACTGCCTTGAGTACTGCC 60.675 60.000 0.00 0.00 0.00 4.85
2650 2911 2.034053 GCTATCGTCCCTGAAGAGTCTG 59.966 54.545 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.