Multiple sequence alignment - TraesCS6D01G040900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G040900 chr6D 100.000 3190 0 0 1 3190 16600689 16603878 0.000000e+00 5891.0
1 TraesCS6D01G040900 chr6D 88.192 271 29 1 1119 1389 16608568 16608835 1.430000e-83 320.0
2 TraesCS6D01G040900 chr6D 78.743 334 40 15 33 335 144066368 144066035 9.030000e-46 195.0
3 TraesCS6D01G040900 chr6D 75.209 359 51 19 5 331 336843907 336844259 5.550000e-28 135.0
4 TraesCS6D01G040900 chr6D 91.026 78 6 1 189 266 385637280 385637204 1.570000e-18 104.0
5 TraesCS6D01G040900 chr6B 91.531 921 54 8 608 1519 29267829 29268734 0.000000e+00 1247.0
6 TraesCS6D01G040900 chr6B 86.200 1058 66 27 1537 2527 29268786 29269830 0.000000e+00 1072.0
7 TraesCS6D01G040900 chr6B 78.748 527 56 27 2042 2525 29559262 29559775 5.170000e-78 302.0
8 TraesCS6D01G040900 chr6B 82.486 354 43 6 1052 1389 29285195 29285545 3.110000e-75 292.0
9 TraesCS6D01G040900 chr6B 93.939 165 9 1 467 630 29267351 29267515 6.830000e-62 248.0
10 TraesCS6D01G040900 chr6A 91.541 662 31 7 889 1525 17397405 17398066 0.000000e+00 889.0
11 TraesCS6D01G040900 chr6A 88.258 528 38 3 1708 2212 17398122 17398648 7.570000e-171 610.0
12 TraesCS6D01G040900 chr6A 92.069 290 16 2 335 619 17396394 17396681 4.960000e-108 401.0
13 TraesCS6D01G040900 chr6A 90.278 288 15 5 2244 2527 17398716 17398994 6.500000e-97 364.0
14 TraesCS6D01G040900 chr6A 79.661 295 31 9 639 904 17396668 17396962 5.430000e-43 185.0
15 TraesCS6D01G040900 chr1B 92.493 373 22 2 2822 3188 565339581 565339953 2.180000e-146 529.0
16 TraesCS6D01G040900 chr1B 78.092 283 32 15 2527 2783 565337281 565337559 5.510000e-33 152.0
17 TraesCS6D01G040900 chr1B 93.750 64 3 1 272 335 59138999 59139061 9.420000e-16 95.3
18 TraesCS6D01G040900 chr2A 91.957 373 24 2 2822 3188 758309018 758309390 4.720000e-143 518.0
19 TraesCS6D01G040900 chr2A 83.621 348 24 9 21 336 419462239 419462585 2.410000e-76 296.0
20 TraesCS6D01G040900 chr2A 77.474 293 50 9 4 284 718570445 718570157 9.160000e-36 161.0
21 TraesCS6D01G040900 chr2A 78.014 282 32 16 2528 2783 758306637 758306914 1.980000e-32 150.0
22 TraesCS6D01G040900 chr5B 92.222 360 20 3 2781 3132 57019742 57019383 1.320000e-138 503.0
23 TraesCS6D01G040900 chr5B 91.525 59 5 0 3130 3188 57019146 57019088 7.330000e-12 82.4
24 TraesCS6D01G040900 chrUn 86.473 414 23 5 2781 3188 91480018 91480404 1.060000e-114 424.0
25 TraesCS6D01G040900 chr4A 79.886 527 82 17 999 1506 579523897 579523376 6.500000e-97 364.0
26 TraesCS6D01G040900 chr3A 78.397 574 76 28 987 1519 128086505 128085939 2.370000e-86 329.0
27 TraesCS6D01G040900 chr3A 80.780 359 33 16 1 324 522186546 522186903 6.830000e-62 248.0
28 TraesCS6D01G040900 chr3B 78.109 571 81 30 987 1519 173324313 173323749 3.970000e-84 322.0
29 TraesCS6D01G040900 chr4B 83.333 354 42 13 999 1338 34571639 34571989 8.590000e-81 311.0
30 TraesCS6D01G040900 chr4B 83.969 262 39 3 1 260 322769808 322769548 6.830000e-62 248.0
31 TraesCS6D01G040900 chr4B 83.650 263 39 4 1 260 322691300 322691039 8.840000e-61 244.0
32 TraesCS6D01G040900 chr2B 83.243 370 28 12 1 336 383374334 383373965 3.090000e-80 309.0
33 TraesCS6D01G040900 chr3D 77.193 570 88 22 987 1519 121880891 121880327 8.650000e-76 294.0
34 TraesCS6D01G040900 chr3D 79.933 299 28 17 987 1256 121735416 121735121 1.170000e-44 191.0
35 TraesCS6D01G040900 chr3D 86.555 119 14 2 1 117 401881862 401881744 2.580000e-26 130.0
36 TraesCS6D01G040900 chr3D 79.602 201 21 5 144 324 401881694 401881894 3.340000e-25 126.0
37 TraesCS6D01G040900 chr4D 90.995 211 12 3 2983 3188 487061237 487061445 8.720000e-71 278.0
38 TraesCS6D01G040900 chr4D 94.074 135 6 2 2781 2913 487061082 487061216 1.500000e-48 204.0
39 TraesCS6D01G040900 chr4D 78.092 283 27 19 2528 2783 487059944 487060218 2.560000e-31 147.0
40 TraesCS6D01G040900 chr5A 80.000 365 42 16 1 335 232836242 232836605 1.140000e-59 241.0
41 TraesCS6D01G040900 chr5D 79.781 366 40 16 1 335 195652592 195652954 5.320000e-58 235.0
42 TraesCS6D01G040900 chr7D 81.356 295 35 11 3 279 288465419 288465127 4.140000e-54 222.0
43 TraesCS6D01G040900 chr2D 80.435 276 25 15 2528 2783 27798552 27798818 1.950000e-42 183.0
44 TraesCS6D01G040900 chr2D 76.016 246 44 11 35 266 542123551 542123795 2.600000e-21 113.0
45 TraesCS6D01G040900 chr2D 90.278 72 5 2 265 336 65685128 65685059 3.390000e-15 93.5
46 TraesCS6D01G040900 chr7B 84.722 144 16 3 3 140 363237609 363237752 4.290000e-29 139.0
47 TraesCS6D01G040900 chr7B 90.805 87 6 2 193 279 434940109 434940025 7.230000e-22 115.0
48 TraesCS6D01G040900 chr7A 83.088 136 17 3 3 132 324939022 324938887 5.590000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G040900 chr6D 16600689 16603878 3189 False 5891.000000 5891 100.000000 1 3190 1 chr6D.!!$F1 3189
1 TraesCS6D01G040900 chr6B 29267351 29269830 2479 False 855.666667 1247 90.556667 467 2527 3 chr6B.!!$F3 2060
2 TraesCS6D01G040900 chr6B 29559262 29559775 513 False 302.000000 302 78.748000 2042 2525 1 chr6B.!!$F2 483
3 TraesCS6D01G040900 chr6A 17396394 17398994 2600 False 489.800000 889 88.361400 335 2527 5 chr6A.!!$F1 2192
4 TraesCS6D01G040900 chr1B 565337281 565339953 2672 False 340.500000 529 85.292500 2527 3188 2 chr1B.!!$F2 661
5 TraesCS6D01G040900 chr2A 758306637 758309390 2753 False 334.000000 518 84.985500 2528 3188 2 chr2A.!!$F2 660
6 TraesCS6D01G040900 chr5B 57019088 57019742 654 True 292.700000 503 91.873500 2781 3188 2 chr5B.!!$R1 407
7 TraesCS6D01G040900 chr4A 579523376 579523897 521 True 364.000000 364 79.886000 999 1506 1 chr4A.!!$R1 507
8 TraesCS6D01G040900 chr3A 128085939 128086505 566 True 329.000000 329 78.397000 987 1519 1 chr3A.!!$R1 532
9 TraesCS6D01G040900 chr3B 173323749 173324313 564 True 322.000000 322 78.109000 987 1519 1 chr3B.!!$R1 532
10 TraesCS6D01G040900 chr3D 121880327 121880891 564 True 294.000000 294 77.193000 987 1519 1 chr3D.!!$R2 532
11 TraesCS6D01G040900 chr4D 487059944 487061445 1501 False 209.666667 278 87.720333 2528 3188 3 chr4D.!!$F1 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.038166 CTGGGTGCCCATTGTACACT 59.962 55.0 10.8 0.0 46.15 3.55 F
332 333 0.107017 CGGGAGCCACAAATCCTCAT 60.107 55.0 0.0 0.0 35.80 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 2180 1.414897 CGAACTTCTTGCGCCGTAC 59.585 57.895 4.18 0.0 0.0 3.67 R
2212 3192 1.128692 GCACAACTATCAGACAACGGC 59.871 52.381 0.00 0.0 0.0 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.034800 AGCATTAGAAAATACCAGGAAATTTCA 57.965 29.630 19.49 0.00 33.53 2.69
32 33 9.651913 GCATTAGAAAATACCAGGAAATTTCAA 57.348 29.630 19.49 1.38 33.53 2.69
61 62 8.846943 ATTCTGAAATTTTGGGATAACAAACC 57.153 30.769 0.00 0.00 39.82 3.27
62 63 7.610580 TCTGAAATTTTGGGATAACAAACCT 57.389 32.000 0.00 0.00 39.82 3.50
63 64 7.441017 TCTGAAATTTTGGGATAACAAACCTG 58.559 34.615 0.00 0.00 39.82 4.00
64 65 6.529220 TGAAATTTTGGGATAACAAACCTGG 58.471 36.000 0.00 0.00 39.82 4.45
65 66 5.497464 AATTTTGGGATAACAAACCTGGG 57.503 39.130 0.00 0.00 39.82 4.45
66 67 3.621682 TTTGGGATAACAAACCTGGGT 57.378 42.857 0.00 0.00 35.57 4.51
67 68 2.595750 TGGGATAACAAACCTGGGTG 57.404 50.000 0.00 0.00 0.00 4.61
68 69 1.182667 GGGATAACAAACCTGGGTGC 58.817 55.000 0.00 0.00 0.00 5.01
69 70 1.182667 GGATAACAAACCTGGGTGCC 58.817 55.000 0.00 0.00 0.00 5.01
70 71 1.182667 GATAACAAACCTGGGTGCCC 58.817 55.000 0.00 0.00 0.00 5.36
71 72 0.485099 ATAACAAACCTGGGTGCCCA 59.515 50.000 9.90 9.90 45.02 5.36
72 73 0.485099 TAACAAACCTGGGTGCCCAT 59.515 50.000 10.80 0.00 46.15 4.00
73 74 0.399806 AACAAACCTGGGTGCCCATT 60.400 50.000 10.80 0.09 46.15 3.16
74 75 1.120795 ACAAACCTGGGTGCCCATTG 61.121 55.000 10.80 14.22 46.15 2.82
75 76 1.120795 CAAACCTGGGTGCCCATTGT 61.121 55.000 10.80 8.42 46.15 2.71
76 77 0.485099 AAACCTGGGTGCCCATTGTA 59.515 50.000 10.80 0.00 46.15 2.41
77 78 0.251608 AACCTGGGTGCCCATTGTAC 60.252 55.000 10.80 0.00 46.15 2.90
78 79 1.382240 CCTGGGTGCCCATTGTACA 59.618 57.895 10.80 0.00 46.15 2.90
79 80 0.965363 CCTGGGTGCCCATTGTACAC 60.965 60.000 10.80 0.00 46.15 2.90
80 81 0.038166 CTGGGTGCCCATTGTACACT 59.962 55.000 10.80 0.00 46.15 3.55
81 82 0.480690 TGGGTGCCCATTGTACACTT 59.519 50.000 5.73 0.00 41.89 3.16
82 83 0.887933 GGGTGCCCATTGTACACTTG 59.112 55.000 1.66 0.00 34.70 3.16
83 84 1.616159 GGTGCCCATTGTACACTTGT 58.384 50.000 0.00 0.00 34.70 3.16
84 85 1.269448 GGTGCCCATTGTACACTTGTG 59.731 52.381 0.00 0.00 34.70 3.33
85 86 1.953686 GTGCCCATTGTACACTTGTGT 59.046 47.619 11.30 11.30 0.00 3.72
86 87 2.360801 GTGCCCATTGTACACTTGTGTT 59.639 45.455 11.80 0.00 0.00 3.32
87 88 2.621055 TGCCCATTGTACACTTGTGTTC 59.379 45.455 11.80 7.57 0.00 3.18
88 89 2.621055 GCCCATTGTACACTTGTGTTCA 59.379 45.455 11.80 10.11 0.00 3.18
89 90 3.067461 GCCCATTGTACACTTGTGTTCAA 59.933 43.478 21.66 21.66 0.00 2.69
90 91 4.261994 GCCCATTGTACACTTGTGTTCAAT 60.262 41.667 23.45 23.45 32.82 2.57
91 92 5.738783 GCCCATTGTACACTTGTGTTCAATT 60.739 40.000 25.30 14.36 32.82 2.32
92 93 6.279882 CCCATTGTACACTTGTGTTCAATTT 58.720 36.000 25.30 12.19 32.82 1.82
93 94 6.420604 CCCATTGTACACTTGTGTTCAATTTC 59.579 38.462 25.30 6.91 32.82 2.17
94 95 6.977502 CCATTGTACACTTGTGTTCAATTTCA 59.022 34.615 25.30 9.14 32.82 2.69
95 96 7.652909 CCATTGTACACTTGTGTTCAATTTCAT 59.347 33.333 25.30 11.13 32.82 2.57
96 97 9.676195 CATTGTACACTTGTGTTCAATTTCATA 57.324 29.630 25.30 8.05 32.82 2.15
97 98 9.897744 ATTGTACACTTGTGTTCAATTTCATAG 57.102 29.630 23.45 0.00 32.82 2.23
98 99 8.669946 TGTACACTTGTGTTCAATTTCATAGA 57.330 30.769 11.80 0.00 32.82 1.98
99 100 8.773645 TGTACACTTGTGTTCAATTTCATAGAG 58.226 33.333 11.80 0.00 32.82 2.43
100 101 8.988934 GTACACTTGTGTTCAATTTCATAGAGA 58.011 33.333 11.80 0.00 32.82 3.10
101 102 8.450578 ACACTTGTGTTCAATTTCATAGAGAA 57.549 30.769 0.00 0.00 32.82 2.87
102 103 9.071276 ACACTTGTGTTCAATTTCATAGAGAAT 57.929 29.630 0.00 0.00 35.83 2.40
103 104 9.338291 CACTTGTGTTCAATTTCATAGAGAATG 57.662 33.333 0.00 0.00 35.83 2.67
104 105 8.517878 ACTTGTGTTCAATTTCATAGAGAATGG 58.482 33.333 0.00 0.00 35.83 3.16
105 106 7.395190 TGTGTTCAATTTCATAGAGAATGGG 57.605 36.000 0.00 0.00 35.83 4.00
106 107 6.947733 TGTGTTCAATTTCATAGAGAATGGGT 59.052 34.615 0.00 0.00 35.83 4.51
107 108 7.094248 TGTGTTCAATTTCATAGAGAATGGGTG 60.094 37.037 0.00 0.00 35.83 4.61
108 109 6.127647 TGTTCAATTTCATAGAGAATGGGTGC 60.128 38.462 0.00 0.00 35.83 5.01
109 110 4.889409 TCAATTTCATAGAGAATGGGTGCC 59.111 41.667 0.00 0.00 35.83 5.01
110 111 3.297134 TTTCATAGAGAATGGGTGCCC 57.703 47.619 0.00 0.00 35.83 5.36
119 120 3.341270 TGGGTGCCCATGGTATCC 58.659 61.111 11.73 9.75 41.89 2.59
120 121 1.620897 TGGGTGCCCATGGTATCCA 60.621 57.895 11.73 12.41 46.09 3.41
121 122 0.998398 TGGGTGCCCATGGTATCCAT 60.998 55.000 11.73 0.00 43.50 3.41
130 131 1.434188 ATGGTATCCATGGCGAAGGA 58.566 50.000 6.96 0.00 43.39 3.36
131 132 1.208706 TGGTATCCATGGCGAAGGAA 58.791 50.000 6.96 0.00 37.48 3.36
132 133 1.562008 TGGTATCCATGGCGAAGGAAA 59.438 47.619 6.96 0.00 37.48 3.13
133 134 1.947456 GGTATCCATGGCGAAGGAAAC 59.053 52.381 6.96 0.00 37.48 2.78
134 135 2.639065 GTATCCATGGCGAAGGAAACA 58.361 47.619 6.96 0.00 37.48 2.83
135 136 2.442236 ATCCATGGCGAAGGAAACAT 57.558 45.000 6.96 0.00 37.48 2.71
136 137 1.462616 TCCATGGCGAAGGAAACATG 58.537 50.000 6.96 0.00 40.17 3.21
138 139 1.176527 CATGGCGAAGGAAACATGGT 58.823 50.000 0.00 0.00 37.61 3.55
139 140 1.133025 CATGGCGAAGGAAACATGGTC 59.867 52.381 0.00 0.00 37.61 4.02
140 141 0.608035 TGGCGAAGGAAACATGGTCC 60.608 55.000 9.20 9.20 35.17 4.46
141 142 0.608035 GGCGAAGGAAACATGGTCCA 60.608 55.000 17.33 0.00 37.65 4.02
142 143 1.463674 GCGAAGGAAACATGGTCCAT 58.536 50.000 17.33 0.00 37.65 3.41
143 144 1.401905 GCGAAGGAAACATGGTCCATC 59.598 52.381 17.33 14.11 37.65 3.51
144 145 2.017049 CGAAGGAAACATGGTCCATCC 58.983 52.381 17.33 6.20 37.65 3.51
201 202 2.922740 TTACCGAGATTACCATGGGC 57.077 50.000 18.09 2.23 0.00 5.36
202 203 1.796017 TACCGAGATTACCATGGGCA 58.204 50.000 18.09 1.46 0.00 5.36
203 204 0.180406 ACCGAGATTACCATGGGCAC 59.820 55.000 18.09 4.57 0.00 5.01
216 217 4.041762 GGCACCCATTCCCCACGA 62.042 66.667 0.00 0.00 0.00 4.35
217 218 2.034999 GCACCCATTCCCCACGAA 59.965 61.111 0.00 0.00 34.14 3.85
218 219 1.605165 GCACCCATTCCCCACGAAA 60.605 57.895 0.00 0.00 33.08 3.46
219 220 1.873270 GCACCCATTCCCCACGAAAC 61.873 60.000 0.00 0.00 33.08 2.78
220 221 0.251165 CACCCATTCCCCACGAAACT 60.251 55.000 0.00 0.00 33.08 2.66
221 222 1.003812 CACCCATTCCCCACGAAACTA 59.996 52.381 0.00 0.00 33.08 2.24
222 223 1.706305 ACCCATTCCCCACGAAACTAA 59.294 47.619 0.00 0.00 33.08 2.24
223 224 2.108601 ACCCATTCCCCACGAAACTAAA 59.891 45.455 0.00 0.00 33.08 1.85
224 225 2.490509 CCCATTCCCCACGAAACTAAAC 59.509 50.000 0.00 0.00 33.08 2.01
225 226 3.150767 CCATTCCCCACGAAACTAAACA 58.849 45.455 0.00 0.00 33.08 2.83
226 227 3.057806 CCATTCCCCACGAAACTAAACAC 60.058 47.826 0.00 0.00 33.08 3.32
227 228 1.868469 TCCCCACGAAACTAAACACG 58.132 50.000 0.00 0.00 0.00 4.49
228 229 0.869730 CCCCACGAAACTAAACACGG 59.130 55.000 0.00 0.00 0.00 4.94
229 230 0.869730 CCCACGAAACTAAACACGGG 59.130 55.000 0.00 0.00 0.00 5.28
230 231 1.585297 CCACGAAACTAAACACGGGT 58.415 50.000 0.00 0.00 0.00 5.28
231 232 1.262151 CCACGAAACTAAACACGGGTG 59.738 52.381 0.00 0.00 0.00 4.61
233 234 3.122297 CACGAAACTAAACACGGGTGTA 58.878 45.455 4.68 0.00 44.13 2.90
234 235 3.060339 CACGAAACTAAACACGGGTGTAC 60.060 47.826 4.68 0.00 44.13 2.90
235 236 3.122297 CGAAACTAAACACGGGTGTACA 58.878 45.455 4.68 0.00 44.13 2.90
236 237 3.555139 CGAAACTAAACACGGGTGTACAA 59.445 43.478 4.68 0.00 44.13 2.41
237 238 4.211794 CGAAACTAAACACGGGTGTACAAT 59.788 41.667 4.68 0.00 44.13 2.71
238 239 5.613142 CGAAACTAAACACGGGTGTACAATC 60.613 44.000 4.68 0.00 44.13 2.67
239 240 3.319755 ACTAAACACGGGTGTACAATCG 58.680 45.455 14.90 14.90 44.13 3.34
240 241 1.515081 AAACACGGGTGTACAATCGG 58.485 50.000 18.93 11.79 44.13 4.18
241 242 0.952010 AACACGGGTGTACAATCGGC 60.952 55.000 18.93 0.00 44.13 5.54
242 243 1.374885 CACGGGTGTACAATCGGCA 60.375 57.895 18.93 0.00 0.00 5.69
243 244 0.742990 CACGGGTGTACAATCGGCAT 60.743 55.000 18.93 1.04 0.00 4.40
244 245 0.461339 ACGGGTGTACAATCGGCATC 60.461 55.000 18.93 0.00 0.00 3.91
245 246 1.157870 CGGGTGTACAATCGGCATCC 61.158 60.000 0.00 0.00 0.00 3.51
246 247 0.107410 GGGTGTACAATCGGCATCCA 60.107 55.000 0.00 0.00 33.78 3.41
247 248 1.299541 GGTGTACAATCGGCATCCAG 58.700 55.000 0.00 0.00 0.00 3.86
248 249 1.299541 GTGTACAATCGGCATCCAGG 58.700 55.000 0.00 0.00 0.00 4.45
249 250 0.908910 TGTACAATCGGCATCCAGGT 59.091 50.000 0.00 0.00 0.00 4.00
250 251 1.280710 TGTACAATCGGCATCCAGGTT 59.719 47.619 0.00 0.00 0.00 3.50
251 252 2.290641 TGTACAATCGGCATCCAGGTTT 60.291 45.455 0.00 0.00 0.00 3.27
252 253 1.176527 ACAATCGGCATCCAGGTTTG 58.823 50.000 0.00 0.00 0.00 2.93
253 254 1.271871 ACAATCGGCATCCAGGTTTGA 60.272 47.619 0.00 0.00 0.00 2.69
254 255 2.026641 CAATCGGCATCCAGGTTTGAT 58.973 47.619 0.00 0.00 0.00 2.57
255 256 3.213506 CAATCGGCATCCAGGTTTGATA 58.786 45.455 0.00 0.00 0.00 2.15
256 257 3.795688 ATCGGCATCCAGGTTTGATAT 57.204 42.857 0.00 0.00 0.00 1.63
257 258 3.126001 TCGGCATCCAGGTTTGATATC 57.874 47.619 0.00 0.00 0.00 1.63
258 259 2.154462 CGGCATCCAGGTTTGATATCC 58.846 52.381 0.00 0.00 0.00 2.59
259 260 2.519013 GGCATCCAGGTTTGATATCCC 58.481 52.381 0.00 0.00 0.00 3.85
260 261 2.154462 GCATCCAGGTTTGATATCCCG 58.846 52.381 0.00 0.00 0.00 5.14
261 262 2.224523 GCATCCAGGTTTGATATCCCGA 60.225 50.000 0.00 0.00 0.00 5.14
262 263 3.747388 GCATCCAGGTTTGATATCCCGAA 60.747 47.826 0.00 0.00 0.00 4.30
263 264 4.460263 CATCCAGGTTTGATATCCCGAAA 58.540 43.478 0.00 0.00 0.00 3.46
264 265 4.788925 TCCAGGTTTGATATCCCGAAAT 57.211 40.909 0.00 0.00 0.00 2.17
265 266 5.124036 TCCAGGTTTGATATCCCGAAATT 57.876 39.130 0.00 0.00 0.00 1.82
266 267 5.130350 TCCAGGTTTGATATCCCGAAATTC 58.870 41.667 0.00 0.00 0.00 2.17
267 268 4.278419 CCAGGTTTGATATCCCGAAATTCC 59.722 45.833 0.00 0.00 0.00 3.01
268 269 4.024048 CAGGTTTGATATCCCGAAATTCCG 60.024 45.833 0.00 0.00 0.00 4.30
269 270 3.881089 GGTTTGATATCCCGAAATTCCGT 59.119 43.478 0.00 0.00 0.00 4.69
270 271 4.261031 GGTTTGATATCCCGAAATTCCGTG 60.261 45.833 0.00 0.00 0.00 4.94
271 272 4.409718 TTGATATCCCGAAATTCCGTGA 57.590 40.909 0.00 0.00 0.00 4.35
272 273 4.617253 TGATATCCCGAAATTCCGTGAT 57.383 40.909 0.00 0.00 31.96 3.06
273 274 5.731957 TGATATCCCGAAATTCCGTGATA 57.268 39.130 0.00 0.00 34.47 2.15
274 275 6.294361 TGATATCCCGAAATTCCGTGATAT 57.706 37.500 1.92 1.92 40.48 1.63
275 276 6.707290 TGATATCCCGAAATTCCGTGATATT 58.293 36.000 3.80 0.00 38.85 1.28
276 277 7.165485 TGATATCCCGAAATTCCGTGATATTT 58.835 34.615 3.80 0.00 38.85 1.40
277 278 7.663905 TGATATCCCGAAATTCCGTGATATTTT 59.336 33.333 3.80 0.00 38.85 1.82
278 279 6.709018 ATCCCGAAATTCCGTGATATTTTT 57.291 33.333 0.00 0.00 0.00 1.94
279 280 6.126568 TCCCGAAATTCCGTGATATTTTTC 57.873 37.500 0.00 0.00 0.00 2.29
280 281 5.883673 TCCCGAAATTCCGTGATATTTTTCT 59.116 36.000 0.00 0.00 0.00 2.52
281 282 7.049133 TCCCGAAATTCCGTGATATTTTTCTA 58.951 34.615 0.00 0.00 0.00 2.10
282 283 7.553402 TCCCGAAATTCCGTGATATTTTTCTAA 59.447 33.333 0.00 0.00 0.00 2.10
283 284 8.349983 CCCGAAATTCCGTGATATTTTTCTAAT 58.650 33.333 0.00 0.00 0.00 1.73
284 285 9.169468 CCGAAATTCCGTGATATTTTTCTAATG 57.831 33.333 0.00 0.00 0.00 1.90
285 286 8.682016 CGAAATTCCGTGATATTTTTCTAATGC 58.318 33.333 0.00 0.00 0.00 3.56
286 287 9.736023 GAAATTCCGTGATATTTTTCTAATGCT 57.264 29.630 0.00 0.00 0.00 3.79
304 305 9.729550 TCTAATGCTATATTCATATAGGGGTGT 57.270 33.333 13.46 0.00 41.48 4.16
305 306 9.770097 CTAATGCTATATTCATATAGGGGTGTG 57.230 37.037 13.46 0.00 41.48 3.82
306 307 7.755666 ATGCTATATTCATATAGGGGTGTGT 57.244 36.000 13.46 0.00 41.48 3.72
307 308 6.946340 TGCTATATTCATATAGGGGTGTGTG 58.054 40.000 13.46 0.00 41.48 3.82
308 309 6.070251 TGCTATATTCATATAGGGGTGTGTGG 60.070 42.308 13.46 0.00 41.48 4.17
309 310 3.508845 ATTCATATAGGGGTGTGTGGC 57.491 47.619 0.00 0.00 0.00 5.01
310 311 1.886422 TCATATAGGGGTGTGTGGCA 58.114 50.000 0.00 0.00 0.00 4.92
311 312 1.488812 TCATATAGGGGTGTGTGGCAC 59.511 52.381 11.55 11.55 46.97 5.01
325 326 4.966787 GCACCCGGGAGCCACAAA 62.967 66.667 30.60 0.00 0.00 2.83
326 327 2.035626 CACCCGGGAGCCACAAAT 59.964 61.111 32.02 0.00 0.00 2.32
327 328 2.046285 CACCCGGGAGCCACAAATC 61.046 63.158 32.02 0.00 0.00 2.17
328 329 2.440247 CCCGGGAGCCACAAATCC 60.440 66.667 18.48 0.00 34.64 3.01
329 330 2.677228 CCGGGAGCCACAAATCCT 59.323 61.111 0.00 0.00 35.80 3.24
330 331 1.452108 CCGGGAGCCACAAATCCTC 60.452 63.158 0.00 0.00 35.80 3.71
331 332 1.299648 CGGGAGCCACAAATCCTCA 59.700 57.895 0.00 0.00 35.80 3.86
332 333 0.107017 CGGGAGCCACAAATCCTCAT 60.107 55.000 0.00 0.00 35.80 2.90
333 334 1.685148 GGGAGCCACAAATCCTCATC 58.315 55.000 0.00 0.00 35.80 2.92
340 341 2.679837 CCACAAATCCTCATCCAACTCG 59.320 50.000 0.00 0.00 0.00 4.18
448 449 4.799564 TCATGTAATTTTGGGTCTTGGC 57.200 40.909 0.00 0.00 0.00 4.52
546 552 8.047310 AGGTTAGTCGAAATGATACTTCCATTT 58.953 33.333 0.00 0.00 44.23 2.32
606 612 2.360553 TTGTGCAAGTTGGTTGTGTG 57.639 45.000 4.75 0.00 38.55 3.82
653 1002 3.304525 CGGGAAGTAGTCATAGGCTTACG 60.305 52.174 0.00 0.00 0.00 3.18
654 1003 3.887716 GGGAAGTAGTCATAGGCTTACGA 59.112 47.826 0.00 0.00 0.00 3.43
693 1042 0.250234 AACTGATAGAAGCTGGCGCA 59.750 50.000 10.83 0.00 39.10 6.09
694 1043 0.179089 ACTGATAGAAGCTGGCGCAG 60.179 55.000 10.83 6.07 39.10 5.18
727 1076 2.071540 GGCTTGCCAAGAAATTTCTGC 58.928 47.619 21.15 19.81 37.65 4.26
729 1078 3.332034 GCTTGCCAAGAAATTTCTGCAT 58.668 40.909 25.33 9.04 36.50 3.96
739 1090 9.806203 CCAAGAAATTTCTGCATGTTCATATAA 57.194 29.630 21.15 0.00 37.65 0.98
772 1123 4.341806 TGCTCATGTTTGATTCCACACTTT 59.658 37.500 0.00 0.00 0.00 2.66
778 1129 2.728690 TGATTCCACACTTTGCATGC 57.271 45.000 11.82 11.82 0.00 4.06
795 1146 4.202192 TGCATGCCATTGTTTTACTTGTCA 60.202 37.500 16.68 0.00 0.00 3.58
811 1162 9.944663 TTTACTTGTCAATCATGTAAACTTGAC 57.055 29.630 14.76 14.76 44.28 3.18
813 1164 6.260050 ACTTGTCAATCATGTAAACTTGACGT 59.740 34.615 15.71 0.00 46.57 4.34
827 1204 3.991773 ACTTGACGTTGTAACATGCGTAT 59.008 39.130 0.00 0.00 37.71 3.06
908 1744 8.927059 ATTATACCATAGGCCTCCTTTGTATA 57.073 34.615 9.68 11.89 34.61 1.47
961 1825 3.700863 AGTCATAAGCCCACCTACCTA 57.299 47.619 0.00 0.00 0.00 3.08
962 1826 3.306613 AGTCATAAGCCCACCTACCTAC 58.693 50.000 0.00 0.00 0.00 3.18
963 1827 2.367894 GTCATAAGCCCACCTACCTACC 59.632 54.545 0.00 0.00 0.00 3.18
964 1828 1.697982 CATAAGCCCACCTACCTACCC 59.302 57.143 0.00 0.00 0.00 3.69
977 1842 4.159693 CCTACCTACCCCTTGCAATTTTTC 59.840 45.833 0.00 0.00 0.00 2.29
1152 2046 1.675641 GTTGTGATGAGCGGGGCTT 60.676 57.895 0.00 0.00 39.88 4.35
1399 2316 0.111061 AGGCTTGATGTGGTTGCTGA 59.889 50.000 0.00 0.00 0.00 4.26
1488 2406 4.012374 ACACTGTGATGCTTTGGATAAGG 58.988 43.478 15.86 0.00 0.00 2.69
1519 2437 7.471890 TGGGTTAGTTTGGTATTAGATGGTTT 58.528 34.615 0.00 0.00 0.00 3.27
1521 2439 7.201670 GGGTTAGTTTGGTATTAGATGGTTTCG 60.202 40.741 0.00 0.00 0.00 3.46
1522 2440 7.335171 GGTTAGTTTGGTATTAGATGGTTTCGT 59.665 37.037 0.00 0.00 0.00 3.85
1523 2441 6.737254 AGTTTGGTATTAGATGGTTTCGTG 57.263 37.500 0.00 0.00 0.00 4.35
1524 2442 6.235664 AGTTTGGTATTAGATGGTTTCGTGT 58.764 36.000 0.00 0.00 0.00 4.49
1526 2444 6.730960 TTGGTATTAGATGGTTTCGTGTTC 57.269 37.500 0.00 0.00 0.00 3.18
1528 2446 6.469410 TGGTATTAGATGGTTTCGTGTTCTT 58.531 36.000 0.00 0.00 0.00 2.52
1531 2449 9.106070 GGTATTAGATGGTTTCGTGTTCTTAAT 57.894 33.333 0.00 0.00 0.00 1.40
1534 2452 6.642683 AGATGGTTTCGTGTTCTTAATACG 57.357 37.500 2.97 2.97 45.70 3.06
1535 2453 5.579511 AGATGGTTTCGTGTTCTTAATACGG 59.420 40.000 8.69 0.00 44.65 4.02
1559 2511 6.442952 GTTAGTTTTGCACATGAACCACATA 58.557 36.000 0.00 0.00 37.46 2.29
1565 2517 7.798596 TTTGCACATGAACCACATAATTTTT 57.201 28.000 0.00 0.00 37.46 1.94
1629 2581 3.296854 TCGACAATATAGCCCAGTGTCT 58.703 45.455 8.23 0.00 37.13 3.41
1633 2585 5.563085 CGACAATATAGCCCAGTGTCTAGAC 60.563 48.000 16.32 16.32 37.13 2.59
1640 2592 1.550976 CCCAGTGTCTAGACCCTGTTC 59.449 57.143 27.02 9.76 35.46 3.18
1642 2594 2.530701 CAGTGTCTAGACCCTGTTCCT 58.469 52.381 22.88 5.29 33.11 3.36
1670 2622 9.713684 TTTAATCCCATGGAGAAATGTTCTTAT 57.286 29.630 15.22 0.00 40.87 1.73
1676 2629 7.420800 CCATGGAGAAATGTTCTTATTGTAGC 58.579 38.462 5.56 0.00 40.87 3.58
1784 2737 9.643693 CTGAACTGGCTTAAATACATTTGAAAT 57.356 29.630 0.00 0.00 0.00 2.17
1921 2897 1.540267 AGCTAGACGGGCATATGTACG 59.460 52.381 16.15 16.15 0.00 3.67
1928 2904 2.159071 ACGGGCATATGTACGCACTAAA 60.159 45.455 17.21 0.00 0.00 1.85
1973 2949 8.453320 GGTTACTAACCCACACATATTTGTAAC 58.547 37.037 6.71 10.04 46.12 2.50
1978 2954 4.095782 ACCCACACATATTTGTAACGATGC 59.904 41.667 0.00 0.00 33.76 3.91
2006 2982 0.730265 TTGCTAACCGCTAATTGCCG 59.270 50.000 0.00 0.00 40.11 5.69
2022 2998 7.964011 GCTAATTGCCGTTGTTAACATTTACTA 59.036 33.333 9.56 0.00 35.15 1.82
2063 3043 6.673839 ATCCTAACTAGCTATGTTTCCTCC 57.326 41.667 11.97 0.00 0.00 4.30
2075 3055 7.890655 AGCTATGTTTCCTCCTGTTTAATTTCT 59.109 33.333 0.00 0.00 0.00 2.52
2086 3066 9.971922 CTCCTGTTTAATTTCTGTTCTTTTCAT 57.028 29.630 0.00 0.00 0.00 2.57
2173 3153 0.468226 TCGAAACACCCAGCAGAAGT 59.532 50.000 0.00 0.00 0.00 3.01
2175 3155 1.541233 CGAAACACCCAGCAGAAGTCT 60.541 52.381 0.00 0.00 0.00 3.24
2197 3177 2.297033 GGAAAGAGCAATGAAGTTGGCA 59.703 45.455 0.00 0.00 38.29 4.92
2199 3179 3.863142 AAGAGCAATGAAGTTGGCATC 57.137 42.857 0.00 0.00 38.29 3.91
2212 3192 3.571401 AGTTGGCATCTCCACTTTGAAAG 59.429 43.478 2.89 2.89 46.55 2.62
2251 3267 5.840715 TGTGCTGCAATTTTGAGAATGTTA 58.159 33.333 2.77 0.00 0.00 2.41
2288 3304 2.586258 TAAGTGGCGCTCTTGATCTC 57.414 50.000 21.64 1.12 0.00 2.75
2332 3348 4.782019 TTGGGATTCCGAAATTTGTCTG 57.218 40.909 0.00 0.00 35.24 3.51
2361 3377 6.545504 TTTCTCTGTTACAGAAAGCATCAC 57.454 37.500 16.28 0.00 40.18 3.06
2362 3378 5.213891 TCTCTGTTACAGAAAGCATCACA 57.786 39.130 16.28 0.00 40.18 3.58
2408 3424 4.199310 TGGCTCACATACTTTGCTAATCC 58.801 43.478 0.00 0.00 0.00 3.01
2409 3425 4.199310 GGCTCACATACTTTGCTAATCCA 58.801 43.478 0.00 0.00 0.00 3.41
2411 3427 5.449177 GGCTCACATACTTTGCTAATCCAAC 60.449 44.000 0.00 0.00 0.00 3.77
2412 3428 5.355350 GCTCACATACTTTGCTAATCCAACT 59.645 40.000 0.00 0.00 0.00 3.16
2413 3429 6.457528 GCTCACATACTTTGCTAATCCAACTC 60.458 42.308 0.00 0.00 0.00 3.01
2414 3430 6.711277 TCACATACTTTGCTAATCCAACTCT 58.289 36.000 0.00 0.00 0.00 3.24
2415 3431 7.168219 TCACATACTTTGCTAATCCAACTCTT 58.832 34.615 0.00 0.00 0.00 2.85
2416 3432 7.119699 TCACATACTTTGCTAATCCAACTCTTG 59.880 37.037 0.00 0.00 0.00 3.02
2425 3441 8.177119 TGCTAATCCAACTCTTGTGTTAATTT 57.823 30.769 0.00 0.00 0.00 1.82
2483 3501 7.710475 ACATGTGTTAATTTGTCTCCCTTTTTG 59.290 33.333 0.00 0.00 0.00 2.44
2554 3576 4.689612 ATATCCAGTGCTACGGTTCATT 57.310 40.909 0.00 0.00 0.00 2.57
2580 3602 2.757686 TACGCTGCTACAAGATCTCG 57.242 50.000 0.00 0.00 0.00 4.04
2587 3609 1.404181 GCTACAAGATCTCGTGGTGCA 60.404 52.381 0.00 0.00 32.13 4.57
2588 3610 2.534298 CTACAAGATCTCGTGGTGCAG 58.466 52.381 0.00 0.00 0.00 4.41
2590 3612 1.337260 ACAAGATCTCGTGGTGCAGTC 60.337 52.381 0.00 0.00 0.00 3.51
2596 3637 1.938657 CTCGTGGTGCAGTCGGATCT 61.939 60.000 0.00 0.00 0.00 2.75
2597 3638 1.079819 CGTGGTGCAGTCGGATCTT 60.080 57.895 0.00 0.00 0.00 2.40
2600 3641 1.880027 GTGGTGCAGTCGGATCTTTTT 59.120 47.619 0.00 0.00 0.00 1.94
2640 3682 1.684869 CCCCCTTGGTACATTCGCATT 60.685 52.381 0.00 0.00 39.30 3.56
2644 3686 3.056891 CCCTTGGTACATTCGCATTTTGT 60.057 43.478 0.00 0.00 39.30 2.83
2649 3691 0.894835 ACATTCGCATTTTGTCCCCC 59.105 50.000 0.00 0.00 0.00 5.40
2650 3692 0.894141 CATTCGCATTTTGTCCCCCA 59.106 50.000 0.00 0.00 0.00 4.96
2662 3704 2.526375 CCCCCAAAAGGCCTTGCA 60.526 61.111 21.33 0.00 0.00 4.08
2684 3726 6.006449 GCAAACCCACAATAGATCTCCATAT 58.994 40.000 0.00 0.00 0.00 1.78
2709 3774 3.119291 GTCCTCGACAGCAGATTATGTG 58.881 50.000 0.00 0.00 32.09 3.21
2718 3783 1.331756 GCAGATTATGTGCTCAACCGG 59.668 52.381 7.10 0.00 37.96 5.28
2719 3784 2.905075 CAGATTATGTGCTCAACCGGA 58.095 47.619 9.46 0.00 0.00 5.14
2767 3840 3.515104 CCAGTGTAAATCAAAAGGGGCAT 59.485 43.478 0.00 0.00 0.00 4.40
2768 3841 4.020307 CCAGTGTAAATCAAAAGGGGCATT 60.020 41.667 0.00 0.00 0.00 3.56
2824 4772 7.822334 ACCTACATGACGAAATCAACAATTAGA 59.178 33.333 0.00 0.00 41.93 2.10
2825 4773 8.116753 CCTACATGACGAAATCAACAATTAGAC 58.883 37.037 0.00 0.00 41.93 2.59
2829 4777 8.830580 CATGACGAAATCAACAATTAGACCTAT 58.169 33.333 0.00 0.00 41.93 2.57
2862 6416 4.063689 AGACTGTCATTCTTGCTTGTGAG 58.936 43.478 10.88 0.00 0.00 3.51
2920 6474 6.824305 ACTTGGGTTACAAATGATCTTGAG 57.176 37.500 1.96 0.00 38.91 3.02
3030 6586 9.684702 ATTCCTATATTTCCTACTACCCAGAAA 57.315 33.333 0.00 0.00 33.13 2.52
3072 6633 6.979238 GCTACAGTAAATTGAAGGAGACGTAT 59.021 38.462 0.00 0.00 0.00 3.06
3102 6663 2.047844 CGTGCACCTGTCCCTGAG 60.048 66.667 12.15 0.00 0.00 3.35
3170 6970 1.375908 GCGTGCTCCATCTTGTCCA 60.376 57.895 0.00 0.00 0.00 4.02
3188 6988 3.706594 GTCCATAGAGTCCAGATCCAACA 59.293 47.826 0.00 0.00 0.00 3.33
3189 6989 3.706594 TCCATAGAGTCCAGATCCAACAC 59.293 47.826 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.034800 TGAAATTTCCTGGTATTTTCTAATGCT 57.965 29.630 15.48 0.00 0.00 3.79
6 7 9.651913 TTGAAATTTCCTGGTATTTTCTAATGC 57.348 29.630 15.48 3.99 0.00 3.56
35 36 9.283768 GGTTTGTTATCCCAAAATTTCAGAATT 57.716 29.630 0.00 0.00 36.17 2.17
36 37 8.659527 AGGTTTGTTATCCCAAAATTTCAGAAT 58.340 29.630 0.00 0.00 36.17 2.40
37 38 7.930865 CAGGTTTGTTATCCCAAAATTTCAGAA 59.069 33.333 0.00 0.00 36.17 3.02
38 39 7.441017 CAGGTTTGTTATCCCAAAATTTCAGA 58.559 34.615 0.00 0.00 36.17 3.27
39 40 6.650390 CCAGGTTTGTTATCCCAAAATTTCAG 59.350 38.462 0.00 0.00 36.17 3.02
40 41 6.465035 CCCAGGTTTGTTATCCCAAAATTTCA 60.465 38.462 0.00 0.00 36.17 2.69
41 42 5.937540 CCCAGGTTTGTTATCCCAAAATTTC 59.062 40.000 0.00 0.00 36.17 2.17
42 43 5.371176 ACCCAGGTTTGTTATCCCAAAATTT 59.629 36.000 0.00 0.00 36.17 1.82
43 44 4.910913 ACCCAGGTTTGTTATCCCAAAATT 59.089 37.500 0.00 0.00 36.17 1.82
44 45 4.285775 CACCCAGGTTTGTTATCCCAAAAT 59.714 41.667 0.00 0.00 36.17 1.82
45 46 3.643792 CACCCAGGTTTGTTATCCCAAAA 59.356 43.478 0.00 0.00 36.17 2.44
46 47 3.235200 CACCCAGGTTTGTTATCCCAAA 58.765 45.455 0.00 0.00 32.12 3.28
47 48 2.883026 CACCCAGGTTTGTTATCCCAA 58.117 47.619 0.00 0.00 0.00 4.12
48 49 1.549037 GCACCCAGGTTTGTTATCCCA 60.549 52.381 0.00 0.00 0.00 4.37
49 50 1.182667 GCACCCAGGTTTGTTATCCC 58.817 55.000 0.00 0.00 0.00 3.85
50 51 1.182667 GGCACCCAGGTTTGTTATCC 58.817 55.000 0.00 0.00 0.00 2.59
65 66 1.953686 ACACAAGTGTACAATGGGCAC 59.046 47.619 11.12 2.14 42.90 5.01
66 67 2.356665 ACACAAGTGTACAATGGGCA 57.643 45.000 11.12 0.00 42.90 5.36
67 68 2.621055 TGAACACAAGTGTACAATGGGC 59.379 45.455 6.24 0.00 44.13 5.36
68 69 4.909696 TTGAACACAAGTGTACAATGGG 57.090 40.909 6.24 9.92 44.13 4.00
69 70 6.977502 TGAAATTGAACACAAGTGTACAATGG 59.022 34.615 6.24 5.57 44.13 3.16
70 71 7.984002 TGAAATTGAACACAAGTGTACAATG 57.016 32.000 6.24 2.45 44.13 2.82
71 72 9.897744 CTATGAAATTGAACACAAGTGTACAAT 57.102 29.630 6.24 0.00 44.13 2.71
72 73 9.114952 TCTATGAAATTGAACACAAGTGTACAA 57.885 29.630 6.24 1.83 44.13 2.41
73 74 8.669946 TCTATGAAATTGAACACAAGTGTACA 57.330 30.769 6.24 0.00 44.13 2.90
74 75 8.988934 TCTCTATGAAATTGAACACAAGTGTAC 58.011 33.333 6.24 0.00 44.13 2.90
75 76 9.554395 TTCTCTATGAAATTGAACACAAGTGTA 57.446 29.630 6.24 0.00 44.13 2.90
76 77 9.071276 ATTCTCTATGAAATTGAACACAAGTGT 57.929 29.630 0.00 0.00 41.01 3.55
77 78 9.338291 CATTCTCTATGAAATTGAACACAAGTG 57.662 33.333 0.00 0.00 38.29 3.16
78 79 8.517878 CCATTCTCTATGAAATTGAACACAAGT 58.482 33.333 0.00 0.00 38.29 3.16
79 80 7.972277 CCCATTCTCTATGAAATTGAACACAAG 59.028 37.037 0.00 0.00 38.29 3.16
80 81 7.451255 ACCCATTCTCTATGAAATTGAACACAA 59.549 33.333 0.00 0.00 38.29 3.33
81 82 6.947733 ACCCATTCTCTATGAAATTGAACACA 59.052 34.615 0.00 0.00 38.29 3.72
82 83 7.253422 CACCCATTCTCTATGAAATTGAACAC 58.747 38.462 0.00 0.00 38.29 3.32
83 84 6.127647 GCACCCATTCTCTATGAAATTGAACA 60.128 38.462 0.00 0.00 38.29 3.18
84 85 6.268566 GCACCCATTCTCTATGAAATTGAAC 58.731 40.000 0.00 0.00 38.29 3.18
85 86 5.360714 GGCACCCATTCTCTATGAAATTGAA 59.639 40.000 0.00 0.00 38.29 2.69
86 87 4.889409 GGCACCCATTCTCTATGAAATTGA 59.111 41.667 0.00 0.00 38.29 2.57
87 88 5.192327 GGCACCCATTCTCTATGAAATTG 57.808 43.478 0.00 0.00 38.29 2.32
103 104 1.853428 ATGGATACCATGGGCACCC 59.147 57.895 18.09 11.82 43.39 4.61
111 112 1.434188 TCCTTCGCCATGGATACCAT 58.566 50.000 18.40 0.00 46.37 3.55
112 113 1.208706 TTCCTTCGCCATGGATACCA 58.791 50.000 18.40 0.00 38.19 3.25
113 114 1.947456 GTTTCCTTCGCCATGGATACC 59.053 52.381 18.40 0.00 31.21 2.73
114 115 2.639065 TGTTTCCTTCGCCATGGATAC 58.361 47.619 18.40 0.00 35.71 2.24
115 116 3.213506 CATGTTTCCTTCGCCATGGATA 58.786 45.455 18.40 0.00 32.87 2.59
116 117 2.026641 CATGTTTCCTTCGCCATGGAT 58.973 47.619 18.40 0.00 32.87 3.41
117 118 1.462616 CATGTTTCCTTCGCCATGGA 58.537 50.000 18.40 0.00 32.87 3.41
118 119 0.457035 CCATGTTTCCTTCGCCATGG 59.543 55.000 7.63 7.63 45.90 3.66
119 120 1.133025 GACCATGTTTCCTTCGCCATG 59.867 52.381 0.00 0.00 35.56 3.66
120 121 1.463674 GACCATGTTTCCTTCGCCAT 58.536 50.000 0.00 0.00 0.00 4.40
121 122 0.608035 GGACCATGTTTCCTTCGCCA 60.608 55.000 3.75 0.00 0.00 5.69
122 123 0.608035 TGGACCATGTTTCCTTCGCC 60.608 55.000 11.02 0.00 33.84 5.54
123 124 1.401905 GATGGACCATGTTTCCTTCGC 59.598 52.381 12.99 0.00 33.84 4.70
124 125 2.017049 GGATGGACCATGTTTCCTTCG 58.983 52.381 12.99 0.00 37.92 3.79
125 126 3.085952 TGGATGGACCATGTTTCCTTC 57.914 47.619 12.99 14.01 44.64 3.46
179 180 3.949113 GCCCATGGTAATCTCGGTAAAAA 59.051 43.478 11.73 0.00 0.00 1.94
180 181 3.054287 TGCCCATGGTAATCTCGGTAAAA 60.054 43.478 11.73 0.00 0.00 1.52
181 182 2.506231 TGCCCATGGTAATCTCGGTAAA 59.494 45.455 11.73 0.00 0.00 2.01
182 183 2.120312 TGCCCATGGTAATCTCGGTAA 58.880 47.619 11.73 0.00 0.00 2.85
183 184 1.414919 GTGCCCATGGTAATCTCGGTA 59.585 52.381 11.73 0.00 0.00 4.02
184 185 0.180406 GTGCCCATGGTAATCTCGGT 59.820 55.000 11.73 0.00 0.00 4.69
185 186 0.535102 GGTGCCCATGGTAATCTCGG 60.535 60.000 11.73 0.00 0.00 4.63
186 187 0.535102 GGGTGCCCATGGTAATCTCG 60.535 60.000 11.73 0.00 35.81 4.04
187 188 0.550914 TGGGTGCCCATGGTAATCTC 59.449 55.000 11.73 0.00 41.89 2.75
188 189 2.721966 TGGGTGCCCATGGTAATCT 58.278 52.632 11.73 0.00 41.89 2.40
199 200 3.577334 TTCGTGGGGAATGGGTGCC 62.577 63.158 0.00 0.00 36.87 5.01
200 201 1.605165 TTTCGTGGGGAATGGGTGC 60.605 57.895 0.00 0.00 33.85 5.01
201 202 0.251165 AGTTTCGTGGGGAATGGGTG 60.251 55.000 0.00 0.00 33.85 4.61
202 203 1.364269 TAGTTTCGTGGGGAATGGGT 58.636 50.000 0.00 0.00 33.85 4.51
203 204 2.490509 GTTTAGTTTCGTGGGGAATGGG 59.509 50.000 0.00 0.00 33.85 4.00
204 205 3.057806 GTGTTTAGTTTCGTGGGGAATGG 60.058 47.826 0.00 0.00 33.85 3.16
205 206 3.364565 CGTGTTTAGTTTCGTGGGGAATG 60.365 47.826 0.00 0.00 33.85 2.67
206 207 2.809696 CGTGTTTAGTTTCGTGGGGAAT 59.190 45.455 0.00 0.00 33.85 3.01
207 208 2.211806 CGTGTTTAGTTTCGTGGGGAA 58.788 47.619 0.00 0.00 0.00 3.97
208 209 1.540797 CCGTGTTTAGTTTCGTGGGGA 60.541 52.381 0.00 0.00 0.00 4.81
209 210 0.869730 CCGTGTTTAGTTTCGTGGGG 59.130 55.000 0.00 0.00 0.00 4.96
210 211 0.869730 CCCGTGTTTAGTTTCGTGGG 59.130 55.000 0.00 0.00 0.00 4.61
211 212 1.262151 CACCCGTGTTTAGTTTCGTGG 59.738 52.381 0.00 0.00 0.00 4.94
212 213 1.935199 ACACCCGTGTTTAGTTTCGTG 59.065 47.619 0.00 0.00 41.83 4.35
213 214 2.314323 ACACCCGTGTTTAGTTTCGT 57.686 45.000 0.00 0.00 41.83 3.85
214 215 3.122297 TGTACACCCGTGTTTAGTTTCG 58.878 45.455 5.69 0.00 41.83 3.46
215 216 5.613142 CGATTGTACACCCGTGTTTAGTTTC 60.613 44.000 5.69 0.00 41.83 2.78
216 217 4.211794 CGATTGTACACCCGTGTTTAGTTT 59.788 41.667 5.69 0.00 41.83 2.66
217 218 3.742369 CGATTGTACACCCGTGTTTAGTT 59.258 43.478 5.69 0.00 41.83 2.24
218 219 3.319755 CGATTGTACACCCGTGTTTAGT 58.680 45.455 5.69 0.00 41.83 2.24
219 220 2.669434 CCGATTGTACACCCGTGTTTAG 59.331 50.000 5.69 0.00 41.83 1.85
220 221 2.686235 CCGATTGTACACCCGTGTTTA 58.314 47.619 5.69 0.00 41.83 2.01
221 222 1.515081 CCGATTGTACACCCGTGTTT 58.485 50.000 5.69 0.00 41.83 2.83
222 223 0.952010 GCCGATTGTACACCCGTGTT 60.952 55.000 5.69 0.00 41.83 3.32
223 224 1.375013 GCCGATTGTACACCCGTGT 60.375 57.895 5.69 5.69 46.87 4.49
224 225 0.742990 ATGCCGATTGTACACCCGTG 60.743 55.000 13.05 0.00 0.00 4.94
225 226 0.461339 GATGCCGATTGTACACCCGT 60.461 55.000 13.05 0.00 0.00 5.28
226 227 1.157870 GGATGCCGATTGTACACCCG 61.158 60.000 0.00 1.74 0.00 5.28
227 228 0.107410 TGGATGCCGATTGTACACCC 60.107 55.000 0.00 0.00 0.00 4.61
228 229 1.299541 CTGGATGCCGATTGTACACC 58.700 55.000 0.00 0.00 0.00 4.16
229 230 1.299541 CCTGGATGCCGATTGTACAC 58.700 55.000 0.00 0.00 0.00 2.90
230 231 0.908910 ACCTGGATGCCGATTGTACA 59.091 50.000 0.00 0.00 0.00 2.90
231 232 2.038387 AACCTGGATGCCGATTGTAC 57.962 50.000 0.00 0.00 0.00 2.90
232 233 2.026729 TCAAACCTGGATGCCGATTGTA 60.027 45.455 0.00 0.00 0.00 2.41
233 234 1.176527 CAAACCTGGATGCCGATTGT 58.823 50.000 0.00 0.00 0.00 2.71
234 235 1.462616 TCAAACCTGGATGCCGATTG 58.537 50.000 0.00 0.00 0.00 2.67
235 236 2.442236 ATCAAACCTGGATGCCGATT 57.558 45.000 0.00 0.00 0.00 3.34
236 237 3.560025 GGATATCAAACCTGGATGCCGAT 60.560 47.826 0.00 0.00 0.00 4.18
237 238 2.224523 GGATATCAAACCTGGATGCCGA 60.225 50.000 0.00 0.00 0.00 5.54
238 239 2.154462 GGATATCAAACCTGGATGCCG 58.846 52.381 0.00 0.00 0.00 5.69
239 240 2.519013 GGGATATCAAACCTGGATGCC 58.481 52.381 0.00 0.00 0.00 4.40
240 241 2.154462 CGGGATATCAAACCTGGATGC 58.846 52.381 0.00 0.00 0.00 3.91
241 242 3.769739 TCGGGATATCAAACCTGGATG 57.230 47.619 0.00 0.00 33.75 3.51
242 243 4.788925 TTTCGGGATATCAAACCTGGAT 57.211 40.909 0.00 0.00 33.75 3.41
243 244 4.788925 ATTTCGGGATATCAAACCTGGA 57.211 40.909 0.00 0.00 33.75 3.86
244 245 4.278419 GGAATTTCGGGATATCAAACCTGG 59.722 45.833 4.83 0.00 33.75 4.45
245 246 4.024048 CGGAATTTCGGGATATCAAACCTG 60.024 45.833 4.83 0.00 0.00 4.00
246 247 4.134563 CGGAATTTCGGGATATCAAACCT 58.865 43.478 4.83 0.00 0.00 3.50
247 248 3.881089 ACGGAATTTCGGGATATCAAACC 59.119 43.478 11.59 0.00 0.00 3.27
248 249 4.573201 TCACGGAATTTCGGGATATCAAAC 59.427 41.667 7.09 0.00 37.68 2.93
249 250 4.771903 TCACGGAATTTCGGGATATCAAA 58.228 39.130 7.09 0.00 37.68 2.69
250 251 4.409718 TCACGGAATTTCGGGATATCAA 57.590 40.909 7.09 0.00 37.68 2.57
257 258 6.131544 AGAAAAATATCACGGAATTTCGGG 57.868 37.500 11.59 6.56 33.28 5.14
258 259 9.169468 CATTAGAAAAATATCACGGAATTTCGG 57.831 33.333 11.59 0.00 33.28 4.30
259 260 8.682016 GCATTAGAAAAATATCACGGAATTTCG 58.318 33.333 4.10 4.10 33.28 3.46
260 261 9.736023 AGCATTAGAAAAATATCACGGAATTTC 57.264 29.630 0.00 0.00 0.00 2.17
278 279 9.729550 ACACCCCTATATGAATATAGCATTAGA 57.270 33.333 10.62 0.00 40.42 2.10
279 280 9.770097 CACACCCCTATATGAATATAGCATTAG 57.230 37.037 10.62 3.94 40.42 1.73
280 281 9.279233 ACACACCCCTATATGAATATAGCATTA 57.721 33.333 10.62 0.00 40.42 1.90
281 282 8.049117 CACACACCCCTATATGAATATAGCATT 58.951 37.037 10.62 0.00 40.42 3.56
282 283 7.365921 CCACACACCCCTATATGAATATAGCAT 60.366 40.741 10.62 0.00 40.42 3.79
283 284 6.070251 CCACACACCCCTATATGAATATAGCA 60.070 42.308 10.62 0.00 40.42 3.49
284 285 6.349300 CCACACACCCCTATATGAATATAGC 58.651 44.000 10.62 0.00 40.42 2.97
285 286 6.070251 TGCCACACACCCCTATATGAATATAG 60.070 42.308 9.50 9.50 41.08 1.31
286 287 5.788014 TGCCACACACCCCTATATGAATATA 59.212 40.000 0.00 0.00 0.00 0.86
287 288 4.601420 TGCCACACACCCCTATATGAATAT 59.399 41.667 0.00 0.00 0.00 1.28
288 289 3.977326 TGCCACACACCCCTATATGAATA 59.023 43.478 0.00 0.00 0.00 1.75
289 290 2.782925 TGCCACACACCCCTATATGAAT 59.217 45.455 0.00 0.00 0.00 2.57
290 291 2.092646 GTGCCACACACCCCTATATGAA 60.093 50.000 0.00 0.00 44.02 2.57
291 292 1.488812 GTGCCACACACCCCTATATGA 59.511 52.381 0.00 0.00 44.02 2.15
292 293 1.967319 GTGCCACACACCCCTATATG 58.033 55.000 0.00 0.00 44.02 1.78
308 309 4.966787 TTTGTGGCTCCCGGGTGC 62.967 66.667 34.54 34.54 0.00 5.01
309 310 2.035626 ATTTGTGGCTCCCGGGTG 59.964 61.111 22.86 20.53 0.00 4.61
310 311 2.355115 GATTTGTGGCTCCCGGGT 59.645 61.111 22.86 0.00 0.00 5.28
311 312 2.440247 GGATTTGTGGCTCCCGGG 60.440 66.667 16.85 16.85 0.00 5.73
312 313 1.452108 GAGGATTTGTGGCTCCCGG 60.452 63.158 0.00 0.00 31.49 5.73
313 314 0.107017 ATGAGGATTTGTGGCTCCCG 60.107 55.000 0.00 0.00 31.49 5.14
314 315 1.685148 GATGAGGATTTGTGGCTCCC 58.315 55.000 0.00 0.00 31.49 4.30
315 316 1.064463 TGGATGAGGATTTGTGGCTCC 60.064 52.381 0.00 0.00 0.00 4.70
316 317 2.424956 GTTGGATGAGGATTTGTGGCTC 59.575 50.000 0.00 0.00 0.00 4.70
317 318 2.042162 AGTTGGATGAGGATTTGTGGCT 59.958 45.455 0.00 0.00 0.00 4.75
318 319 2.424956 GAGTTGGATGAGGATTTGTGGC 59.575 50.000 0.00 0.00 0.00 5.01
319 320 2.679837 CGAGTTGGATGAGGATTTGTGG 59.320 50.000 0.00 0.00 0.00 4.17
320 321 3.372206 GTCGAGTTGGATGAGGATTTGTG 59.628 47.826 0.00 0.00 0.00 3.33
321 322 3.261897 AGTCGAGTTGGATGAGGATTTGT 59.738 43.478 0.00 0.00 0.00 2.83
322 323 3.866651 AGTCGAGTTGGATGAGGATTTG 58.133 45.455 0.00 0.00 0.00 2.32
323 324 4.223923 AGAAGTCGAGTTGGATGAGGATTT 59.776 41.667 10.94 0.00 0.00 2.17
324 325 3.772025 AGAAGTCGAGTTGGATGAGGATT 59.228 43.478 10.94 0.00 0.00 3.01
325 326 3.370104 AGAAGTCGAGTTGGATGAGGAT 58.630 45.455 10.94 0.00 0.00 3.24
326 327 2.755655 GAGAAGTCGAGTTGGATGAGGA 59.244 50.000 10.94 0.00 0.00 3.71
327 328 2.757868 AGAGAAGTCGAGTTGGATGAGG 59.242 50.000 10.94 0.00 0.00 3.86
328 329 4.448537 AAGAGAAGTCGAGTTGGATGAG 57.551 45.455 10.94 0.00 0.00 2.90
329 330 4.873746 AAAGAGAAGTCGAGTTGGATGA 57.126 40.909 10.94 0.00 0.00 2.92
330 331 5.931441 AAAAAGAGAAGTCGAGTTGGATG 57.069 39.130 10.94 0.00 0.00 3.51
357 358 5.238432 TCATACAACTCGTGCTTTTGAACAT 59.762 36.000 0.00 0.00 0.00 2.71
366 367 2.094026 TGCAGATCATACAACTCGTGCT 60.094 45.455 0.00 0.00 0.00 4.40
372 373 3.339253 TGCACTGCAGATCATACAACT 57.661 42.857 23.35 0.00 33.32 3.16
430 431 4.521256 GTGTAGCCAAGACCCAAAATTACA 59.479 41.667 0.00 0.00 0.00 2.41
484 485 4.023193 AGACCGCAACAACTCCAAAATAAG 60.023 41.667 0.00 0.00 0.00 1.73
565 571 5.376854 AAGGAACAACATCTGCAACATAC 57.623 39.130 0.00 0.00 0.00 2.39
632 979 3.887716 TCGTAAGCCTATGACTACTTCCC 59.112 47.826 0.00 0.00 37.18 3.97
653 1002 9.809096 TCAGTTTCTTATCTAGTGATCATTGTC 57.191 33.333 0.00 0.00 34.32 3.18
693 1042 0.037975 CAAGCCGCTCCAATTTTGCT 60.038 50.000 0.00 0.00 0.00 3.91
694 1043 1.629345 GCAAGCCGCTCCAATTTTGC 61.629 55.000 0.00 0.00 37.77 3.68
727 1076 7.934457 AGCAAAGCCTACTTTATATGAACATG 58.066 34.615 0.00 0.00 44.41 3.21
729 1078 7.109501 TGAGCAAAGCCTACTTTATATGAACA 58.890 34.615 0.00 0.00 44.41 3.18
739 1090 4.144297 TCAAACATGAGCAAAGCCTACTT 58.856 39.130 0.00 0.00 37.90 2.24
772 1123 4.202192 TGACAAGTAAAACAATGGCATGCA 60.202 37.500 21.36 6.13 0.00 3.96
778 1129 9.689976 TTACATGATTGACAAGTAAAACAATGG 57.310 29.630 0.00 0.00 38.92 3.16
795 1146 7.921787 TGTTACAACGTCAAGTTTACATGATT 58.078 30.769 0.00 0.00 42.02 2.57
811 1162 7.478978 TGATTTTTACATACGCATGTTACAACG 59.521 33.333 6.58 9.11 42.98 4.10
813 1164 9.283420 CATGATTTTTACATACGCATGTTACAA 57.717 29.630 6.58 0.00 42.98 2.41
827 1204 9.527157 TCTTAAGGAATGACCATGATTTTTACA 57.473 29.630 1.85 0.00 42.04 2.41
852 1229 7.595130 GTGAAACAGTATGGACATTCCTTTTTC 59.405 37.037 11.95 11.95 43.62 2.29
961 1825 3.716353 AGAAAGGAAAAATTGCAAGGGGT 59.284 39.130 4.94 0.00 0.00 4.95
962 1826 4.356405 AGAAAGGAAAAATTGCAAGGGG 57.644 40.909 4.94 0.00 0.00 4.79
963 1827 4.931601 GCTAGAAAGGAAAAATTGCAAGGG 59.068 41.667 4.94 0.00 0.00 3.95
964 1828 4.931601 GGCTAGAAAGGAAAAATTGCAAGG 59.068 41.667 4.94 0.00 0.00 3.61
977 1842 2.105649 GGGGAGAATGAGGCTAGAAAGG 59.894 54.545 0.00 0.00 0.00 3.11
1284 2180 1.414897 CGAACTTCTTGCGCCGTAC 59.585 57.895 4.18 0.00 0.00 3.67
1399 2316 3.782046 CCCGAAGAAACACGATCATAGT 58.218 45.455 0.00 0.00 0.00 2.12
1488 2406 9.636789 ATCTAATACCAAACTAACCCAATTACC 57.363 33.333 0.00 0.00 0.00 2.85
1519 2437 7.569226 GCAAAACTAACCGTATTAAGAACACGA 60.569 37.037 0.00 0.00 37.89 4.35
1521 2439 7.321984 GTGCAAAACTAACCGTATTAAGAACAC 59.678 37.037 0.00 0.00 0.00 3.32
1522 2440 7.012138 TGTGCAAAACTAACCGTATTAAGAACA 59.988 33.333 0.00 0.00 0.00 3.18
1523 2441 7.354257 TGTGCAAAACTAACCGTATTAAGAAC 58.646 34.615 0.00 0.00 0.00 3.01
1524 2442 7.493743 TGTGCAAAACTAACCGTATTAAGAA 57.506 32.000 0.00 0.00 0.00 2.52
1526 2444 7.523219 TCATGTGCAAAACTAACCGTATTAAG 58.477 34.615 0.00 0.00 0.00 1.85
1528 2446 7.299586 GTTCATGTGCAAAACTAACCGTATTA 58.700 34.615 0.00 0.00 0.00 0.98
1531 2449 4.023878 GGTTCATGTGCAAAACTAACCGTA 60.024 41.667 0.00 0.00 31.59 4.02
1532 2450 3.243267 GGTTCATGTGCAAAACTAACCGT 60.243 43.478 0.00 0.00 31.59 4.83
1533 2451 3.243234 TGGTTCATGTGCAAAACTAACCG 60.243 43.478 11.62 0.00 38.52 4.44
1534 2452 4.048504 GTGGTTCATGTGCAAAACTAACC 58.951 43.478 10.15 10.15 37.32 2.85
1535 2453 4.677584 TGTGGTTCATGTGCAAAACTAAC 58.322 39.130 0.00 0.00 0.00 2.34
1579 2531 9.574516 AGTCCACTGAAGTGTTTATAAATTTCT 57.425 29.630 9.49 0.00 44.21 2.52
1597 2549 4.920340 GCTATATTGTCGATCAGTCCACTG 59.080 45.833 0.00 0.00 45.08 3.66
1598 2550 4.021894 GGCTATATTGTCGATCAGTCCACT 60.022 45.833 0.00 0.00 0.00 4.00
1602 2554 4.021894 ACTGGGCTATATTGTCGATCAGTC 60.022 45.833 0.00 0.00 0.00 3.51
1603 2555 3.898123 ACTGGGCTATATTGTCGATCAGT 59.102 43.478 0.00 0.00 0.00 3.41
1629 2581 6.214278 TGGGATTAAATAGGAACAGGGTCTA 58.786 40.000 0.00 0.00 0.00 2.59
1633 2585 5.079643 CCATGGGATTAAATAGGAACAGGG 58.920 45.833 2.85 0.00 0.00 4.45
1640 2592 8.482852 AACATTTCTCCATGGGATTAAATAGG 57.517 34.615 13.02 5.22 30.88 2.57
1642 2594 9.713684 AAGAACATTTCTCCATGGGATTAAATA 57.286 29.630 13.02 0.00 39.61 1.40
1670 2622 8.445275 TTTCATTTTCTTACAGAGTGCTACAA 57.555 30.769 0.00 0.00 0.00 2.41
1921 2897 6.039717 TGGAATATCTGAAATGCCTTTAGTGC 59.960 38.462 0.00 0.00 0.00 4.40
1928 2904 4.803329 ACCTGGAATATCTGAAATGCCT 57.197 40.909 0.00 0.00 0.00 4.75
1960 2936 5.799435 TGCAAAGCATCGTTACAAATATGTG 59.201 36.000 0.00 0.00 35.20 3.21
1961 2937 5.948588 TGCAAAGCATCGTTACAAATATGT 58.051 33.333 0.00 0.00 37.30 2.29
1973 2949 3.763319 GCAAGCTGCAAAGCATCG 58.237 55.556 1.02 0.00 44.26 3.84
2022 2998 7.181125 AGTTAGGATTCTACCAGTTGAACTCAT 59.819 37.037 0.00 0.00 0.00 2.90
2031 3007 7.299134 ACATAGCTAGTTAGGATTCTACCAGT 58.701 38.462 5.22 0.00 0.00 4.00
2032 3008 7.768807 ACATAGCTAGTTAGGATTCTACCAG 57.231 40.000 5.22 0.00 0.00 4.00
2086 3066 9.625747 TTCTCTGCATCATAAATTAACCACATA 57.374 29.630 0.00 0.00 0.00 2.29
2173 3153 3.822735 CCAACTTCATTGCTCTTTCCAGA 59.177 43.478 0.00 0.00 36.93 3.86
2175 3155 2.297033 GCCAACTTCATTGCTCTTTCCA 59.703 45.455 0.00 0.00 36.93 3.53
2182 3162 2.097825 GGAGATGCCAACTTCATTGCT 58.902 47.619 0.00 0.00 36.93 3.91
2197 3177 2.554032 CAACGGCTTTCAAAGTGGAGAT 59.446 45.455 0.00 0.00 0.00 2.75
2199 3179 1.676006 ACAACGGCTTTCAAAGTGGAG 59.324 47.619 0.00 0.00 0.00 3.86
2212 3192 1.128692 GCACAACTATCAGACAACGGC 59.871 52.381 0.00 0.00 0.00 5.68
2251 3267 6.129179 CCACTTATTGGTTGGGTTATCAGAT 58.871 40.000 0.00 0.00 41.10 2.90
2320 3336 5.973565 AGAGAAAAACTGCAGACAAATTTCG 59.026 36.000 23.35 0.00 31.78 3.46
2332 3348 5.683302 GCTTTCTGTAACAGAGAAAAACTGC 59.317 40.000 5.79 2.63 41.75 4.40
2385 3401 4.640201 GGATTAGCAAAGTATGTGAGCCAA 59.360 41.667 0.00 0.00 0.00 4.52
2386 3402 4.199310 GGATTAGCAAAGTATGTGAGCCA 58.801 43.478 0.00 0.00 0.00 4.75
2408 3424 9.462174 TCATTAAGCAAATTAACACAAGAGTTG 57.538 29.630 0.00 0.00 36.20 3.16
2483 3501 4.263727 TGCATCTCCTCTCTCTATAGGACC 60.264 50.000 0.00 0.00 36.97 4.46
2554 3576 2.693074 TCTTGTAGCAGCGTATCATGGA 59.307 45.455 0.00 0.00 0.00 3.41
2580 3602 1.523758 AAAAGATCCGACTGCACCAC 58.476 50.000 0.00 0.00 0.00 4.16
2600 3641 8.396619 AGGGGGTGTATGTAAAAAGATAAGTA 57.603 34.615 0.00 0.00 0.00 2.24
2640 3682 0.030603 AAGGCCTTTTGGGGGACAAA 60.031 50.000 13.78 0.00 46.82 2.83
2644 3686 2.203773 GCAAGGCCTTTTGGGGGA 60.204 61.111 17.61 0.00 40.82 4.81
2649 3691 0.179936 TGGGTTTGCAAGGCCTTTTG 59.820 50.000 17.61 7.85 0.00 2.44
2650 3692 0.180171 GTGGGTTTGCAAGGCCTTTT 59.820 50.000 17.61 0.00 0.00 2.27
2662 3704 7.941238 CAGAATATGGAGATCTATTGTGGGTTT 59.059 37.037 0.00 0.00 29.55 3.27
2709 3774 0.674895 AGCAAGATGTCCGGTTGAGC 60.675 55.000 0.00 0.00 0.00 4.26
2712 3777 1.066143 ACCTAGCAAGATGTCCGGTTG 60.066 52.381 0.00 0.00 0.00 3.77
2716 3781 0.872021 GCGACCTAGCAAGATGTCCG 60.872 60.000 0.00 0.00 37.05 4.79
2718 3783 1.565305 CAGCGACCTAGCAAGATGTC 58.435 55.000 0.00 0.00 40.15 3.06
2719 3784 0.460987 GCAGCGACCTAGCAAGATGT 60.461 55.000 0.00 0.00 40.15 3.06
2824 4772 7.482169 TGACAGTCTCACAGAAATTATAGGT 57.518 36.000 1.31 0.00 0.00 3.08
2825 4773 8.954950 AATGACAGTCTCACAGAAATTATAGG 57.045 34.615 1.31 0.00 0.00 2.57
2829 4777 7.095060 GCAAGAATGACAGTCTCACAGAAATTA 60.095 37.037 5.78 0.00 0.00 1.40
2920 6474 0.319405 AACATTTGCAGGCAGGCTTC 59.681 50.000 0.00 0.00 34.04 3.86
3025 6581 5.413833 AGCCACATCAACTTGTCTATTTCTG 59.586 40.000 0.00 0.00 0.00 3.02
3030 6586 5.046304 ACTGTAGCCACATCAACTTGTCTAT 60.046 40.000 0.00 0.00 33.14 1.98
3072 6633 2.129607 GGTGCACGTCTTTTCGTTCTA 58.870 47.619 11.45 0.00 42.27 2.10
3085 6646 2.047844 CTCAGGGACAGGTGCACG 60.048 66.667 11.45 0.00 0.00 5.34
3102 6663 1.202348 GACCCTTGGTTATGCTGCAAC 59.798 52.381 6.36 0.29 35.25 4.17
3137 6937 1.727335 GCACGCTGACTTCCTTCTAAC 59.273 52.381 0.00 0.00 0.00 2.34
3139 6939 1.202582 GAGCACGCTGACTTCCTTCTA 59.797 52.381 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.