AutoCloner

Multiple sequence alignment - TraesCS6D01G040500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G040500	chr6D	100.000	2543	0	0	1	2543	16509763	16512305	0.000000e+00	4697.0
1	TraesCS6D01G040500	chr6D	89.091	770	55	10	828	1578	16307424	16306665	0.000000e+00	929.0
2	TraesCS6D01G040500	chr6D	93.478	92	6	0	1918	2009	16389329	16389238	1.230000e-28	137.0
3	TraesCS6D01G040500	chr6D	81.208	149	17	4	555	693	82596884	82596737	2.670000e-20	110.0
4	TraesCS6D01G040500	chr6D	79.333	150	18	4	555	692	82591083	82590935	2.690000e-15	93.5
5	TraesCS6D01G040500	chr3A	87.507	1873	144	36	724	2543	66249723	66251558	0.000000e+00	2080.0
6	TraesCS6D01G040500	chr6A	92.302	1260	77	9	555	1811	16700541	16701783	0.000000e+00	1772.0
7	TraesCS6D01G040500	chr6A	88.172	837	59	25	747	1566	16594039	16593226	0.000000e+00	961.0
8	TraesCS6D01G040500	chr6A	92.129	559	36	3	1	556	16699920	16700473	0.000000e+00	782.0
9	TraesCS6D01G040500	chr6A	93.750	288	16	2	1896	2183	16701808	16702093	5.030000e-117	431.0
10	TraesCS6D01G040500	chr6A	83.554	377	37	13	2185	2537	16702567	16702942	1.890000e-86	329.0
11	TraesCS6D01G040500	chr6A	94.853	136	7	0	1866	2001	16662520	16662385	1.980000e-51	213.0
12	TraesCS6D01G040500	chr6A	93.590	78	5	0	2178	2255	16702132	16702209	1.600000e-22	117.0
13	TraesCS6D01G040500	chr6B	87.190	1413	97	44	819	2197	28713882	28715244	0.000000e+00	1530.0
14	TraesCS6D01G040500	chr6B	85.089	845	82	30	879	1685	59100438	59101276	0.000000e+00	822.0
15	TraesCS6D01G040500	chr6B	90.113	617	46	11	979	1591	58812383	58812988	0.000000e+00	787.0
16	TraesCS6D01G040500	chr6B	88.941	642	49	16	979	1604	59723181	59723816	0.000000e+00	773.0
17	TraesCS6D01G040500	chr6B	83.247	388	33	7	2178	2543	28715253	28715630	6.780000e-86	327.0
18	TraesCS6D01G040500	chr6B	93.571	140	8	1	555	694	59293897	59294035	9.220000e-50	207.0
19	TraesCS6D01G040500	chr6B	87.975	158	12	1	1859	2009	28516570	28516413	2.010000e-41	180.0
20	TraesCS6D01G040500	chr6B	98.611	72	0	1	724	795	59294706	59294776	2.660000e-25	126.0
21	TraesCS6D01G040500	chr5D	86.085	848	80	22	735	1564	514924361	514923534	0.000000e+00	878.0
22	TraesCS6D01G040500	chr5A	85.495	848	87	22	735	1562	642919649	642918818	0.000000e+00	852.0
23	TraesCS6D01G040500	chr5A	90.230	174	15	2	68	241	653299611	653299440	2.550000e-55	226.0
24	TraesCS6D01G040500	chr7B	92.169	166	13	0	79	244	213468100	213467935	4.230000e-58	235.0
25	TraesCS6D01G040500	chr7B	89.444	180	17	2	80	258	593524309	593524487	2.550000e-55	226.0
26	TraesCS6D01G040500	chr1A	92.169	166	12	1	80	244	39438999	39438834	1.520000e-57	233.0
27	TraesCS6D01G040500	chr1A	91.018	167	15	0	80	246	106220715	106220549	2.550000e-55	226.0
28	TraesCS6D01G040500	chr7D	91.566	166	14	0	79	244	236831730	236831565	1.970000e-56	230.0
29	TraesCS6D01G040500	chr2D	90.643	171	15	1	72	241	134301658	134301488	2.550000e-55	226.0
30	TraesCS6D01G040500	chr2D	90.909	66	4	2	562	626	527902263	527902199	1.250000e-13	87.9
31	TraesCS6D01G040500	chr2D	88.889	72	6	2	555	625	633165506	633165576	1.250000e-13	87.9
32	TraesCS6D01G040500	chr2D	88.889	63	7	0	574	636	6603790	6603728	7.540000e-11	78.7
33	TraesCS6D01G040500	chr3D	89.266	177	18	1	74	249	528611694	528611518	1.180000e-53	220.0
34	TraesCS6D01G040500	chr3D	79.333	150	15	8	555	691	410510467	410510321	9.690000e-15	91.6
35	TraesCS6D01G040500	chr1D	82.143	140	21	4	555	692	81452654	81452517	1.600000e-22	117.0
36	TraesCS6D01G040500	chr2B	80.255	157	14	8	555	696	796609002	796609156	4.480000e-18	102.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G040500	chr6D	16509763	16512305	2542	False	4697.0	4697	100.0000	1	2543	1	chr6D.!!$F1	2542
1	TraesCS6D01G040500	chr6D	16306665	16307424	759	True	929.0	929	89.0910	828	1578	1	chr6D.!!$R1	750
2	TraesCS6D01G040500	chr3A	66249723	66251558	1835	False	2080.0	2080	87.5070	724	2543	1	chr3A.!!$F1	1819
3	TraesCS6D01G040500	chr6A	16593226	16594039	813	True	961.0	961	88.1720	747	1566	1	chr6A.!!$R1	819
4	TraesCS6D01G040500	chr6A	16699920	16702942	3022	False	686.2	1772	91.0650	1	2537	5	chr6A.!!$F1	2536
5	TraesCS6D01G040500	chr6B	28713882	28715630	1748	False	928.5	1530	85.2185	819	2543	2	chr6B.!!$F4	1724
6	TraesCS6D01G040500	chr6B	59100438	59101276	838	False	822.0	822	85.0890	879	1685	1	chr6B.!!$F2	806
7	TraesCS6D01G040500	chr6B	58812383	58812988	605	False	787.0	787	90.1130	979	1591	1	chr6B.!!$F1	612
8	TraesCS6D01G040500	chr6B	59723181	59723816	635	False	773.0	773	88.9410	979	1604	1	chr6B.!!$F3	625
9	TraesCS6D01G040500	chr5D	514923534	514924361	827	True	878.0	878	86.0850	735	1564	1	chr5D.!!$R1	829
10	TraesCS6D01G040500	chr5A	642918818	642919649	831	True	852.0	852	85.4950	735	1562	1	chr5A.!!$R1	827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
435	439	0.322456	AACCTTAGCAAGCATCCGCA	60.322	50.0	0.0	0.0	42.27	5.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1551	1678	0.326618	ACACTGGCTAGGCTATGGGT	60.327	55.0	18.18	11.62	0.0	4.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
26	27	6.751514	TCTCTCAAGTTCTATCTGACACTC	57.248	41.667	0.00	0.00	0.00	3.51
37	38	8.851145	GTTCTATCTGACACTCACATAATCCTA	58.149	37.037	0.00	0.00	0.00	2.94
41	42	6.809869	TCTGACACTCACATAATCCTACATG	58.190	40.000	0.00	0.00	0.00	3.21
77	78	8.897872	TGTTTTACCTGGACTTTCTACTAAAG	57.102	34.615	0.00	0.00	0.00	1.85
78	79	8.707449	TGTTTTACCTGGACTTTCTACTAAAGA	58.293	33.333	0.00	0.00	0.00	2.52
79	80	9.722184	GTTTTACCTGGACTTTCTACTAAAGAT	57.278	33.333	0.00	0.00	33.05	2.40
82	83	9.765295	TTACCTGGACTTTCTACTAAAGATACT	57.235	33.333	0.00	0.00	33.05	2.12
87	89	7.560626	TGGACTTTCTACTAAAGATACTCCCTC	59.439	40.741	4.59	0.00	33.05	4.30
137	139	6.291377	AGATTTCAATGCGGACTACATACAT	58.709	36.000	0.00	0.00	0.00	2.29
207	211	8.609176	TCCGCATGTAGTCTTTGTTAAAATATC	58.391	33.333	0.00	0.00	0.00	1.63
253	257	3.502595	GGAGGGAGTAGTTTGCAAGTTTC	59.497	47.826	0.00	0.00	0.00	2.78
350	354	9.003658	GGATCGATAATCATACATTTTCCAGTT	57.996	33.333	0.00	0.00	35.96	3.16
358	362	7.915293	TCATACATTTTCCAGTTTCATACGT	57.085	32.000	0.00	0.00	0.00	3.57
368	372	2.694109	AGTTTCATACGTAGGAGAGGCC	59.306	50.000	10.13	0.00	0.00	5.19
385	389	2.705658	AGGCCTATGCTAACATGCAGTA	59.294	45.455	1.29	0.00	46.71	2.74
403	407	5.066764	TGCAGTAACATCCATTGACATCATG	59.933	40.000	0.00	0.00	0.00	3.07
431	435	8.840321	TCTTATTGATAAACCTTAGCAAGCATC	58.160	33.333	3.80	0.00	0.00	3.91
432	436	5.835113	TTGATAAACCTTAGCAAGCATCC	57.165	39.130	0.00	0.00	0.00	3.51
433	437	3.876914	TGATAAACCTTAGCAAGCATCCG	59.123	43.478	0.00	0.00	0.00	4.18
434	438	0.811281	AAACCTTAGCAAGCATCCGC	59.189	50.000	0.00	0.00	38.99	5.54
435	439	0.322456	AACCTTAGCAAGCATCCGCA	60.322	50.000	0.00	0.00	42.27	5.69
436	440	0.322456	ACCTTAGCAAGCATCCGCAA	60.322	50.000	0.00	0.00	42.27	4.85
449	453	3.181510	GCATCCGCAAGTACGAAGAATTT	60.182	43.478	0.00	0.00	38.36	1.82
519	523	7.332926	CCCATATGCATGAACTCTTATACTCAC	59.667	40.741	10.16	0.00	33.67	3.51
542	546	4.790140	CGTGAAAGTGATAGCATTGCTTTC	59.210	41.667	17.71	18.29	42.90	2.62
545	549	4.871993	AAGTGATAGCATTGCTTTCTCG	57.128	40.909	23.63	0.00	40.44	4.04
616	689	4.998671	TTTGGTGTGACAATGAACACAT	57.001	36.364	19.51	0.00	46.83	3.21
619	692	4.967036	TGGTGTGACAATGAACACATCTA	58.033	39.130	20.71	11.49	46.83	1.98
696	769	3.056322	AGAGCCAAATTGGATTTCTGTGC	60.056	43.478	17.47	0.00	35.51	4.57
990	1095	4.856607	CTCGCCGCCGGAGAAGTC	62.857	72.222	11.55	0.00	29.80	3.01
1207	1322	1.219393	CTTTCCTCTCCCCGAGCAC	59.781	63.158	0.00	0.00	38.49	4.40
1211	1329	4.154347	CTCTCCCCGAGCACCTGC	62.154	72.222	0.00	0.00	42.49	4.85
1231	1349	2.609244	GCTCTGCTCTGTTCTTCTCGTT	60.609	50.000	0.00	0.00	0.00	3.85
1259	1377	3.067106	GGATTGCTGACTTCGTTTCTGA	58.933	45.455	0.00	0.00	0.00	3.27
1263	1381	2.224281	TGCTGACTTCGTTTCTGATGGT	60.224	45.455	0.00	0.00	0.00	3.55
1269	1387	6.285224	TGACTTCGTTTCTGATGGTCTTTTA	58.715	36.000	0.00	0.00	0.00	1.52
1377	1495	2.600769	AACGACCAGGAGCTCGGT	60.601	61.111	12.58	12.58	38.56	4.69
1458	1579	2.985116	GCTCCCCAAGAAGTCCCCC	61.985	68.421	0.00	0.00	0.00	5.40
1501	1622	0.034896	GTCGCCCAAGAAGAAGACCA	59.965	55.000	0.00	0.00	0.00	4.02
1548	1672	4.858680	GCCAAGGAGTAGCCGCCC	62.859	72.222	0.00	0.00	43.43	6.13
1686	1832	5.470098	ACATTGTACCTGTGATTTCTGTGAC	59.530	40.000	0.00	0.00	0.00	3.67
1687	1833	4.002906	TGTACCTGTGATTTCTGTGACC	57.997	45.455	0.00	0.00	0.00	4.02
1766	1914	7.733773	TTCAATCTCTTGTTCTACCTATGGA	57.266	36.000	0.00	0.00	33.87	3.41
1827	1975	4.800993	CGTCTGAAGGTCACTGCTAAATAG	59.199	45.833	0.00	0.00	0.00	1.73
1861	2014	7.445121	TGTAAATTCTCTCTTGTGTCATCTGT	58.555	34.615	0.00	0.00	0.00	3.41
1951	2122	7.265673	CGGGAAACTGAATCTATGAAGAACTA	58.734	38.462	0.00	0.00	39.98	2.24
2047	2223	6.542005	TGCAGTGAAACATTTCAGTTTAGAGA	59.458	34.615	11.22	0.00	45.84	3.10
2084	2260	7.358352	CGAAACATTTTGCAGAAATGTAACCTC	60.358	37.037	26.05	20.58	46.62	3.85
2113	2289	3.508012	TCTCTCTGTAGTTGAGCTGGTTC	59.492	47.826	0.00	0.00	0.00	3.62
2130	2325	3.123050	GGTTCCATGTTGCTTTGTTCAC	58.877	45.455	0.00	0.00	0.00	3.18
2218	2456	7.148507	GGCTGCTACTAGATGCAAAGTATAATG	60.149	40.741	13.41	3.13	38.81	1.90
2220	2458	9.138062	CTGCTACTAGATGCAAAGTATAATGAG	57.862	37.037	13.41	0.00	38.81	2.90
2295	2978	1.439543	AGTCAGGCCCTTGAAAGACT	58.560	50.000	0.00	0.00	0.00	3.24
2318	3002	8.281212	ACTTCAGTACAAAAATGTTCTTCACT	57.719	30.769	0.00	0.00	0.00	3.41
2411	3095	9.667107	AGAATTTCAGTAAAACCGATGAATAGA	57.333	29.630	0.00	0.00	32.13	1.98
2441	3128	6.113411	AGGTTAAATGGAGAGTTGGTATTCG	58.887	40.000	0.00	0.00	0.00	3.34
2446	3133	4.665833	TGGAGAGTTGGTATTCGGTATG	57.334	45.455	0.00	0.00	0.00	2.39
2504	3192	1.733360	TCGCGGGTTAATTTTTCTCCG	59.267	47.619	6.13	0.00	40.33	4.63
2507	3195	3.609879	CGCGGGTTAATTTTTCTCCGTTT	60.610	43.478	0.00	0.00	39.64	3.60
2524	3213	2.735762	CGTTTTGCTTCCCCGTTGAAAA	60.736	45.455	0.00	0.00	0.00	2.29
2528	3217	3.104843	TGCTTCCCCGTTGAAAATTTG	57.895	42.857	0.00	0.00	0.00	2.32
2537	3226	7.272978	TCCCCGTTGAAAATTTGAATTTGTTA	58.727	30.769	2.71	0.00	38.53	2.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	6.577103	ACATGTAGGATTATGTGAGTGTCAG	58.423	40.000	0.00	0.00	36.26	3.51
37	38	9.921637	CCAGGTAAAACAACATTTAATACATGT	57.078	29.630	2.69	2.69	36.36	3.21
60	61	7.562088	AGGGAGTATCTTTAGTAGAAAGTCCAG	59.438	40.741	0.00	0.00	36.22	3.86
65	66	8.528044	ACAGAGGGAGTATCTTTAGTAGAAAG	57.472	38.462	0.00	0.00	36.22	2.62
78	79	9.900112	ACTTATATTTAGGAACAGAGGGAGTAT	57.100	33.333	0.00	0.00	0.00	2.12
79	80	9.364653	GACTTATATTTAGGAACAGAGGGAGTA	57.635	37.037	0.00	0.00	0.00	2.59
80	81	8.068733	AGACTTATATTTAGGAACAGAGGGAGT	58.931	37.037	0.00	0.00	0.00	3.85
81	82	8.485578	AGACTTATATTTAGGAACAGAGGGAG	57.514	38.462	0.00	0.00	0.00	4.30
82	83	8.855804	AAGACTTATATTTAGGAACAGAGGGA	57.144	34.615	0.00	0.00	0.00	4.20
103	105	6.743172	GTCCGCATTGAAATCTCTAAAAAGAC	59.257	38.462	0.00	0.00	0.00	3.01
124	126	6.701841	ACTCATTTTGCTATGTATGTAGTCCG	59.298	38.462	0.00	0.00	0.00	4.79
163	165	9.890629	ACATGCGGATGTATATAGACATATTTT	57.109	29.630	21.92	0.00	41.27	1.82
217	221	8.773033	ACTACTCCCTCCGTTTCTAAATATAA	57.227	34.615	0.00	0.00	0.00	0.98
231	235	2.861147	ACTTGCAAACTACTCCCTCC	57.139	50.000	0.00	0.00	0.00	4.30
232	236	4.214332	CAGAAACTTGCAAACTACTCCCTC	59.786	45.833	0.00	0.00	0.00	4.30
253	257	1.153289	CCCACATTCGCCCTCTCAG	60.153	63.158	0.00	0.00	0.00	3.35
350	354	2.750141	AGGCCTCTCCTACGTATGAA	57.250	50.000	0.00	0.00	45.41	2.57
368	372	5.759763	TGGATGTTACTGCATGTTAGCATAG	59.240	40.000	0.00	0.00	44.68	2.23
385	389	6.845758	AAGAACATGATGTCAATGGATGTT	57.154	33.333	0.00	0.00	39.39	2.71
403	407	8.458843	TGCTTGCTAAGGTTTATCAATAAGAAC	58.541	33.333	0.00	0.00	0.00	3.01
423	427	1.060937	CGTACTTGCGGATGCTTGC	59.939	57.895	0.00	0.00	43.34	4.01
424	428	1.061131	CTTCGTACTTGCGGATGCTTG	59.939	52.381	0.00	0.00	43.34	4.01
431	435	7.681903	ACTTAATAAATTCTTCGTACTTGCGG	58.318	34.615	0.00	0.00	0.00	5.69
449	453	9.930158	ATCTTATGGTTGGGCTTTAACTTAATA	57.070	29.630	0.00	0.00	0.00	0.98
519	523	4.346734	AAGCAATGCTATCACTTTCACG	57.653	40.909	8.68	0.00	38.25	4.35
566	639	8.466798	GCTATCTGCAAATTTTTAGGGTAAAGA	58.533	33.333	0.00	0.00	42.31	2.52
584	657	3.191162	TGTCACACCAAAATGCTATCTGC	59.809	43.478	0.00	0.00	43.25	4.26
585	658	5.375417	TTGTCACACCAAAATGCTATCTG	57.625	39.130	0.00	0.00	0.00	2.90
670	743	5.416952	ACAGAAATCCAATTTGGCTCTAGTG	59.583	40.000	10.76	6.32	37.47	2.74
798	873	3.637229	AGTGGACGGTGGAGATTAGTATG	59.363	47.826	0.00	0.00	0.00	2.39
868	943	2.355818	GGTTTTATCGGGAAGCAGAGGT	60.356	50.000	0.00	0.00	0.00	3.85
913	999	2.037121	TCGGAATGCTCTGAGTTTGTGA	59.963	45.455	6.53	0.00	31.64	3.58
990	1095	4.183686	CCGGCCATCTTGCTTGCG	62.184	66.667	2.24	0.00	0.00	4.85
1173	1278	3.135530	AGGAAAGATCTGTGCATACCTCC	59.864	47.826	7.22	0.00	0.00	4.30
1207	1322	1.275856	AGAAGAACAGAGCAGAGCAGG	59.724	52.381	0.00	0.00	0.00	4.85
1211	1329	3.296322	AACGAGAAGAACAGAGCAGAG	57.704	47.619	0.00	0.00	0.00	3.35
1231	1349	2.672874	CGAAGTCAGCAATCCATCGAAA	59.327	45.455	0.00	0.00	0.00	3.46
1237	1355	2.807967	CAGAAACGAAGTCAGCAATCCA	59.192	45.455	0.00	0.00	45.00	3.41
1242	1360	2.224281	ACCATCAGAAACGAAGTCAGCA	60.224	45.455	0.00	0.00	45.00	4.41
1243	1361	2.413453	GACCATCAGAAACGAAGTCAGC	59.587	50.000	0.00	0.00	45.00	4.26
1259	1377	6.660949	CAGGACCTGAGATTTTAAAAGACCAT	59.339	38.462	17.22	0.00	32.44	3.55
1263	1381	6.448369	TCCAGGACCTGAGATTTTAAAAGA	57.552	37.500	23.77	3.87	32.44	2.52
1269	1387	2.273619	AGCTCCAGGACCTGAGATTTT	58.726	47.619	23.77	0.42	32.44	1.82
1501	1622	3.966543	CTTGGGGGACTTGGCGGT	61.967	66.667	0.00	0.00	0.00	5.68
1546	1670	2.743718	CTAGGCTATGGGTGCGGG	59.256	66.667	0.00	0.00	0.00	6.13
1547	1671	2.031163	GCTAGGCTATGGGTGCGG	59.969	66.667	0.00	0.00	0.00	5.69
1548	1672	2.031163	GGCTAGGCTATGGGTGCG	59.969	66.667	9.46	0.00	0.00	5.34
1551	1678	0.326618	ACACTGGCTAGGCTATGGGT	60.327	55.000	18.18	11.62	0.00	4.51
1686	1832	1.406180	TGATTGCATCTTTCGCCATGG	59.594	47.619	7.63	7.63	0.00	3.66
1687	1833	2.855660	TGATTGCATCTTTCGCCATG	57.144	45.000	0.00	0.00	0.00	3.66
1827	1975	8.017946	CACAAGAGAGAATTTACAAGTAAAGCC	58.982	37.037	10.70	5.61	38.30	4.35
1951	2122	2.492025	TGATTGGGAATCCTAGGTGCT	58.508	47.619	9.08	0.00	37.09	4.40
2028	2203	8.567948	TGGTCAATCTCTAAACTGAAATGTTTC	58.432	33.333	0.00	0.00	40.23	2.78
2047	2223	3.959535	AAATGTTTCGGCATGGTCAAT	57.040	38.095	0.00	0.00	0.00	2.57
2084	2260	5.034152	GCTCAACTACAGAGAGAAAGATCG	58.966	45.833	0.00	0.00	35.09	3.69
2113	2289	2.653890	CTCGTGAACAAAGCAACATGG	58.346	47.619	0.00	0.00	0.00	3.66
2130	2325	6.363357	CCAACTTTAAGAATTCTTTTGGCTCG	59.637	38.462	25.56	12.40	34.97	5.03
2173	2368	1.399089	CCAAAACGTTGTCAGGTTCGT	59.601	47.619	0.00	0.00	38.15	3.85
2218	2456	1.118838	AGCACCTCATCTGGCTACTC	58.881	55.000	0.00	0.00	34.25	2.59
2220	2458	0.826715	TCAGCACCTCATCTGGCTAC	59.173	55.000	0.00	0.00	34.25	3.58
2295	2978	7.338196	TCCAGTGAAGAACATTTTTGTACTGAA	59.662	33.333	0.00	0.00	36.12	3.02
2318	3002	2.507484	CAGGAAATCTTGTGCACTCCA	58.493	47.619	19.41	1.21	0.00	3.86
2427	3114	5.657474	TGAACATACCGAATACCAACTCTC	58.343	41.667	0.00	0.00	0.00	3.20
2433	3120	5.607939	ACTGATGAACATACCGAATACCA	57.392	39.130	0.00	0.00	0.00	3.25
2470	3157	0.389948	CCGCGACTGGGCCTATTATC	60.390	60.000	8.23	0.00	0.00	1.75
2472	3160	2.504274	CCCGCGACTGGGCCTATTA	61.504	63.158	8.23	0.00	43.70	0.98
2485	3173	1.465777	ACGGAGAAAAATTAACCCGCG	59.534	47.619	0.00	0.00	40.48	6.46
2495	3183	2.101750	GGGGAAGCAAAACGGAGAAAAA	59.898	45.455	0.00	0.00	0.00	1.94
2504	3192	2.588027	TTTCAACGGGGAAGCAAAAC	57.412	45.000	0.00	0.00	0.00	2.43
2507	3195	3.133003	TCAAATTTTCAACGGGGAAGCAA	59.867	39.130	0.00	0.00	0.00	3.91

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.