Multiple sequence alignment - TraesCS6D01G040400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G040400 chr6D 100.000 2535 0 0 1 2535 16501916 16504450 0.000000e+00 4682
1 TraesCS6D01G040400 chr6D 88.631 818 68 14 739 1535 16523451 16522638 0.000000e+00 972
2 TraesCS6D01G040400 chr6D 85.995 764 60 28 811 1535 29089504 29090259 0.000000e+00 774
3 TraesCS6D01G040400 chr6D 85.279 788 67 28 848 1595 29381439 29380661 0.000000e+00 767
4 TraesCS6D01G040400 chr6A 92.251 1368 73 9 1184 2534 16683648 16684999 0.000000e+00 1908
5 TraesCS6D01G040400 chr6A 90.652 1273 81 18 1 1253 16682399 16683653 0.000000e+00 1657
6 TraesCS6D01G040400 chr6A 87.911 943 79 27 809 1726 16658880 16657948 0.000000e+00 1077
7 TraesCS6D01G040400 chr6A 89.558 814 65 12 739 1535 16720460 16719650 0.000000e+00 1014
8 TraesCS6D01G040400 chr6B 89.558 814 65 13 739 1535 28980499 28979689 0.000000e+00 1014
9 TraesCS6D01G040400 chr6B 85.816 987 101 30 741 1707 28925785 28926752 0.000000e+00 1011
10 TraesCS6D01G040400 chr6B 89.330 806 70 9 740 1535 29060857 29060058 0.000000e+00 998
11 TraesCS6D01G040400 chr6B 89.505 667 57 12 922 1579 58812326 58812988 0.000000e+00 832
12 TraesCS6D01G040400 chr6B 93.004 243 15 2 2293 2535 59233445 59233685 1.120000e-93 353
13 TraesCS6D01G040400 chr5A 85.543 920 100 23 638 1535 642919745 642918837 0.000000e+00 931


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G040400 chr6D 16501916 16504450 2534 False 4682.0 4682 100.0000 1 2535 1 chr6D.!!$F1 2534
1 TraesCS6D01G040400 chr6D 16522638 16523451 813 True 972.0 972 88.6310 739 1535 1 chr6D.!!$R1 796
2 TraesCS6D01G040400 chr6D 29089504 29090259 755 False 774.0 774 85.9950 811 1535 1 chr6D.!!$F2 724
3 TraesCS6D01G040400 chr6D 29380661 29381439 778 True 767.0 767 85.2790 848 1595 1 chr6D.!!$R2 747
4 TraesCS6D01G040400 chr6A 16682399 16684999 2600 False 1782.5 1908 91.4515 1 2534 2 chr6A.!!$F1 2533
5 TraesCS6D01G040400 chr6A 16657948 16658880 932 True 1077.0 1077 87.9110 809 1726 1 chr6A.!!$R1 917
6 TraesCS6D01G040400 chr6A 16719650 16720460 810 True 1014.0 1014 89.5580 739 1535 1 chr6A.!!$R2 796
7 TraesCS6D01G040400 chr6B 28979689 28980499 810 True 1014.0 1014 89.5580 739 1535 1 chr6B.!!$R1 796
8 TraesCS6D01G040400 chr6B 28925785 28926752 967 False 1011.0 1011 85.8160 741 1707 1 chr6B.!!$F1 966
9 TraesCS6D01G040400 chr6B 29060058 29060857 799 True 998.0 998 89.3300 740 1535 1 chr6B.!!$R2 795
10 TraesCS6D01G040400 chr6B 58812326 58812988 662 False 832.0 832 89.5050 922 1579 1 chr6B.!!$F2 657
11 TraesCS6D01G040400 chr5A 642918837 642919745 908 True 931.0 931 85.5430 638 1535 1 chr5A.!!$R1 897

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
926 978 0.042188 CGTCCAAACACACAAGCTCG 60.042 55.0 0.0 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 2287 1.143073 ACCTGACTCCCCAAACTTCAC 59.857 52.381 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.367302 TCTCACAAAGTCACATGAATCACA 58.633 37.500 0.00 0.00 0.00 3.58
37 38 7.445096 ACAAAGTCACATGAATCACACTAATCA 59.555 33.333 0.00 0.00 0.00 2.57
87 88 9.567848 AGTAACATTAAACACAAAGTTCAACAG 57.432 29.630 0.00 0.00 40.26 3.16
122 126 5.090652 TGTCATGCGTAAGAGTGAAAAAC 57.909 39.130 0.00 0.00 43.02 2.43
130 134 6.183360 TGCGTAAGAGTGAAAAACAGACAAAT 60.183 34.615 0.00 0.00 43.02 2.32
132 136 6.632834 CGTAAGAGTGAAAAACAGACAAATGG 59.367 38.462 0.00 0.00 43.02 3.16
147 151 5.774690 AGACAAATGGCCAGAGTAATGAAAA 59.225 36.000 13.05 0.00 0.00 2.29
153 157 3.251004 GGCCAGAGTAATGAAAATAGGCG 59.749 47.826 0.00 0.00 40.40 5.52
175 179 6.177822 GCGAAAAACAAACAAATGAACAGAG 58.822 36.000 0.00 0.00 0.00 3.35
190 196 4.690748 TGAACAGAGTAATGAAAAGGCTCG 59.309 41.667 0.00 0.00 0.00 5.03
247 253 8.288913 CACAAAAGTGTCATATACATGTTCACA 58.711 33.333 2.30 0.00 41.10 3.58
316 326 0.102120 TTTCACGCACCCAAGCAAAG 59.898 50.000 0.00 0.00 0.00 2.77
317 327 0.749818 TTCACGCACCCAAGCAAAGA 60.750 50.000 0.00 0.00 0.00 2.52
319 329 0.594796 CACGCACCCAAGCAAAGAAC 60.595 55.000 0.00 0.00 0.00 3.01
325 335 3.486383 CACCCAAGCAAAGAACCTTCTA 58.514 45.455 0.00 0.00 36.28 2.10
394 404 1.745087 GACGACATTGACAATGGCCAT 59.255 47.619 27.46 14.09 44.30 4.40
395 405 2.942376 GACGACATTGACAATGGCCATA 59.058 45.455 27.46 2.39 44.30 2.74
398 408 3.242837 CGACATTGACAATGGCCATACAG 60.243 47.826 27.46 14.64 44.30 2.74
401 411 4.158394 ACATTGACAATGGCCATACAGTTC 59.842 41.667 27.46 11.37 43.21 3.01
422 432 9.101325 CAGTTCTTATCCTTACCCATCCTTATA 57.899 37.037 0.00 0.00 0.00 0.98
438 448 7.013655 CCATCCTTATATTTTTCACTCCACAGG 59.986 40.741 0.00 0.00 0.00 4.00
530 541 9.739276 ACATTTTAGTCTATGGAGTGATGAAAA 57.261 29.630 11.18 4.95 0.00 2.29
589 600 3.695556 CACACATGATGAATGGGCTTACA 59.304 43.478 0.00 0.00 44.25 2.41
598 609 5.559148 TGAATGGGCTTACAACCAAAAAT 57.441 34.783 0.00 0.00 40.73 1.82
599 610 6.672266 TGAATGGGCTTACAACCAAAAATA 57.328 33.333 0.00 0.00 40.73 1.40
600 611 7.067496 TGAATGGGCTTACAACCAAAAATAA 57.933 32.000 0.00 0.00 40.73 1.40
691 703 3.054139 TGGCTGCAAGATAAGAGTGGAAT 60.054 43.478 0.50 0.00 34.07 3.01
734 753 6.857964 CACAAAGACAATCATCAAGTGGTAAC 59.142 38.462 0.00 0.00 0.00 2.50
802 824 1.452108 GCCCCCAAACTGATCTCCG 60.452 63.158 0.00 0.00 0.00 4.63
894 934 1.040893 CCGCCTCCCAATAAAACCCC 61.041 60.000 0.00 0.00 0.00 4.95
926 978 0.042188 CGTCCAAACACACAAGCTCG 60.042 55.000 0.00 0.00 0.00 5.03
946 998 0.465705 GAGCATTCCGATCCAGACCA 59.534 55.000 0.00 0.00 0.00 4.02
1033 1101 2.048127 GCGGCGACAGGAAGAAGT 60.048 61.111 12.98 0.00 0.00 3.01
1056 1124 2.526873 ACCAGGTCCGTCAAGGCT 60.527 61.111 0.00 0.00 40.77 4.58
1215 1352 1.229209 TCCCCGAGCACCTCTTCTT 60.229 57.895 0.00 0.00 0.00 2.52
1541 1702 2.906354 CCACCAAGGAGTAGAATTCCG 58.094 52.381 0.65 0.00 41.22 4.30
1611 1776 5.989777 TGAGCAGTCTTTTGGTTAGTTAGAC 59.010 40.000 0.00 0.00 36.38 2.59
1626 1791 4.396522 AGTTAGACGAGTAGTGGTTCTGT 58.603 43.478 0.00 0.00 0.00 3.41
1723 1888 8.975295 TCAGATCTTGATTCTCTTGTTCTATCA 58.025 33.333 0.00 0.00 0.00 2.15
1728 1893 6.857437 TGATTCTCTTGTTCTATCAGTGGA 57.143 37.500 0.00 0.00 0.00 4.02
1731 1896 5.016051 TCTCTTGTTCTATCAGTGGATGC 57.984 43.478 0.00 0.00 34.89 3.91
1740 1905 6.183810 TCTATCAGTGGATGCAATTGATCT 57.816 37.500 10.34 1.55 34.89 2.75
1751 1916 7.144000 GGATGCAATTGATCTTGTTAATCCTC 58.856 38.462 10.34 0.00 34.00 3.71
1755 1920 6.017934 GCAATTGATCTTGTTAATCCTCGCTA 60.018 38.462 10.34 0.00 0.00 4.26
1759 1924 5.831525 TGATCTTGTTAATCCTCGCTACCTA 59.168 40.000 0.00 0.00 0.00 3.08
1773 1944 3.308866 CGCTACCTATGCTGTTTTGTACC 59.691 47.826 0.00 0.00 0.00 3.34
1786 1957 6.417930 GCTGTTTTGTACCAAATTCTCACTTC 59.582 38.462 0.00 0.00 0.00 3.01
1791 1962 9.567776 TTTTGTACCAAATTCTCACTTCTATCA 57.432 29.630 0.00 0.00 0.00 2.15
1792 1963 9.739276 TTTGTACCAAATTCTCACTTCTATCAT 57.261 29.630 0.00 0.00 0.00 2.45
1812 1983 6.298441 TCATCTGAAAAATTCCCCAATTCC 57.702 37.500 0.00 0.00 30.37 3.01
1822 1993 2.845659 TCCCCAATTCCTTGCTCTCTA 58.154 47.619 0.00 0.00 0.00 2.43
1831 2002 6.890979 ATTCCTTGCTCTCTAAATTATGGC 57.109 37.500 0.00 0.00 0.00 4.40
1840 2011 6.514048 GCTCTCTAAATTATGGCGCTCAATTT 60.514 38.462 21.67 21.67 36.25 1.82
1901 2072 8.562052 CACAATCATATTACTATTGAGCTGCAA 58.438 33.333 1.02 0.00 41.53 4.08
1911 2083 9.762933 TTACTATTGAGCTGCAAAGAAAAATTT 57.237 25.926 1.02 0.00 40.48 1.82
1923 2095 6.652245 CAAAGAAAAATTTGCACCTGATGAC 58.348 36.000 0.00 0.00 33.71 3.06
1944 2116 2.424557 CAGCTTTCTGTCAGTCAGCAT 58.575 47.619 20.95 9.10 43.32 3.79
2007 2179 1.033746 AGCCATGCCAAGACATTCCG 61.034 55.000 0.00 0.00 0.00 4.30
2020 2192 4.331968 AGACATTCCGGCAGTTAATTTCA 58.668 39.130 0.00 0.00 0.00 2.69
2021 2193 4.396166 AGACATTCCGGCAGTTAATTTCAG 59.604 41.667 0.00 0.00 0.00 3.02
2037 2209 4.371624 TTTCAGCTTGATCTTTCCCTCA 57.628 40.909 0.00 0.00 0.00 3.86
2070 2242 7.584987 AGTTCTTTACATGTTGTATTCACAGC 58.415 34.615 2.30 0.00 35.67 4.40
2115 2287 2.823829 GAGCCGGCCGTATGCAAAG 61.824 63.158 26.15 6.93 43.89 2.77
2139 2318 1.697982 AGTTTGGGGAGTCAGGTGTAC 59.302 52.381 0.00 0.00 0.00 2.90
2231 2411 7.773224 TGACCTAAAGAGAAACAAACATTGAGA 59.227 33.333 0.00 0.00 0.00 3.27
2274 2454 8.370493 TGCTCATGTAAGAAAACTGATATAGC 57.630 34.615 0.00 0.00 0.00 2.97
2298 2478 4.545823 TGTTTCACTTCGTTCCATCAAC 57.454 40.909 0.00 0.00 0.00 3.18
2304 2484 6.142818 TCACTTCGTTCCATCAACAAAAAT 57.857 33.333 0.00 0.00 34.20 1.82
2390 2571 7.538303 AAAAACACTTGGAATTGAACACATC 57.462 32.000 0.00 0.00 0.00 3.06
2404 2585 9.988350 AATTGAACACATCGATTCTATTACAAC 57.012 29.630 0.00 0.00 37.57 3.32
2405 2586 7.534085 TGAACACATCGATTCTATTACAACC 57.466 36.000 0.00 0.00 0.00 3.77
2406 2587 6.254804 TGAACACATCGATTCTATTACAACCG 59.745 38.462 0.00 0.00 0.00 4.44
2407 2588 5.898174 ACACATCGATTCTATTACAACCGA 58.102 37.500 0.00 0.00 0.00 4.69
2408 2589 6.513180 ACACATCGATTCTATTACAACCGAT 58.487 36.000 0.00 0.00 35.95 4.18
2409 2590 6.984474 ACACATCGATTCTATTACAACCGATT 59.016 34.615 0.00 0.00 33.72 3.34
2410 2591 7.169308 ACACATCGATTCTATTACAACCGATTC 59.831 37.037 0.00 0.00 33.72 2.52
2411 2592 7.382488 CACATCGATTCTATTACAACCGATTCT 59.618 37.037 0.00 0.00 33.72 2.40
2412 2593 7.926555 ACATCGATTCTATTACAACCGATTCTT 59.073 33.333 0.00 0.00 33.72 2.52
2422 2603 4.250464 ACAACCGATTCTTCGCTAAATCA 58.750 39.130 0.00 0.00 44.12 2.57
2450 2631 2.229784 ACCAAAACTAGTACCGAGTCCG 59.770 50.000 0.00 0.00 0.00 4.79
2477 2658 6.042208 GGAAGGTCTTGTGCTAAGGATATAGT 59.958 42.308 2.24 0.00 0.00 2.12
2516 2697 5.406649 TCTTGTTTTTCATGCTGTTTTCGT 58.593 33.333 0.00 0.00 0.00 3.85
2519 2700 4.109050 GTTTTTCATGCTGTTTTCGTGGA 58.891 39.130 0.00 0.00 0.00 4.02
2527 2708 7.416817 TCATGCTGTTTTCGTGGATTTATATG 58.583 34.615 0.00 0.00 0.00 1.78
2534 2715 9.413048 TGTTTTCGTGGATTTATATGGTTTTTC 57.587 29.630 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 9.915629 TGTTGAACTTTGTGTTTAATGTTACTT 57.084 25.926 0.00 0.00 39.30 2.24
87 88 9.406828 TCTTACGCATGACATGTTACTATTATC 57.593 33.333 16.62 0.00 0.00 1.75
101 102 5.050363 TCTGTTTTTCACTCTTACGCATGAC 60.050 40.000 0.00 0.00 0.00 3.06
122 126 4.264253 TCATTACTCTGGCCATTTGTCTG 58.736 43.478 5.51 7.36 0.00 3.51
130 134 4.207165 GCCTATTTTCATTACTCTGGCCA 58.793 43.478 4.71 4.71 32.50 5.36
132 136 4.127171 TCGCCTATTTTCATTACTCTGGC 58.873 43.478 0.00 0.00 35.02 4.85
147 151 6.758886 TGTTCATTTGTTTGTTTTTCGCCTAT 59.241 30.769 0.00 0.00 0.00 2.57
175 179 9.274065 CTTGTTATTAACGAGCCTTTTCATTAC 57.726 33.333 10.22 0.00 36.19 1.89
227 233 5.582269 GCTGTGTGAACATGTATATGACACT 59.418 40.000 22.49 0.00 42.17 3.55
247 253 8.082242 GTCAATGGTATGTTTAAAAAGAGCTGT 58.918 33.333 4.03 0.00 0.00 4.40
287 293 3.190327 TGGGTGCGTGAAATGTTTCTATG 59.810 43.478 6.99 1.51 38.02 2.23
316 326 8.764524 AATCATGCGAGTAATATAGAAGGTTC 57.235 34.615 0.00 0.00 0.00 3.62
317 327 8.367911 TGAATCATGCGAGTAATATAGAAGGTT 58.632 33.333 0.00 0.00 0.00 3.50
319 329 8.815189 CATGAATCATGCGAGTAATATAGAAGG 58.185 37.037 10.55 0.00 35.02 3.46
325 335 8.557592 ACAATCATGAATCATGCGAGTAATAT 57.442 30.769 17.81 1.56 41.18 1.28
372 382 0.521242 GCCATTGTCAATGTCGTCGC 60.521 55.000 21.32 14.24 37.18 5.19
373 383 0.096976 GGCCATTGTCAATGTCGTCG 59.903 55.000 21.32 9.03 37.18 5.12
394 404 6.449956 AGGATGGGTAAGGATAAGAACTGTA 58.550 40.000 0.00 0.00 0.00 2.74
395 405 5.289510 AGGATGGGTAAGGATAAGAACTGT 58.710 41.667 0.00 0.00 0.00 3.55
422 432 2.949447 ACAGCCTGTGGAGTGAAAAAT 58.051 42.857 0.00 0.00 0.00 1.82
438 448 3.493503 GGAAGGTATATGCGTTGTACAGC 59.506 47.826 3.37 0.00 0.00 4.40
530 541 4.272489 CATCGGGTATTGGCCATATTCAT 58.728 43.478 6.09 0.00 0.00 2.57
814 836 4.701663 CAGCCGTTGGATCTGTGT 57.298 55.556 0.00 0.00 0.00 3.72
926 978 0.250081 GGTCTGGATCGGAATGCTCC 60.250 60.000 0.00 0.00 38.52 4.70
1056 1124 4.974438 ACGGGGAACTGGAGCCCA 62.974 66.667 0.00 0.00 46.57 5.36
1215 1352 4.360563 GTCGAACACAAGAAGAACAGAGA 58.639 43.478 0.00 0.00 0.00 3.10
1541 1702 2.295349 AGCAACAATGGCTATGCTATGC 59.705 45.455 0.00 0.00 46.61 3.14
1611 1776 4.008330 TCTAAGGACAGAACCACTACTCG 58.992 47.826 0.00 0.00 0.00 4.18
1626 1791 2.159043 CCTTGCTCAGCGAATCTAAGGA 60.159 50.000 5.43 0.00 36.23 3.36
1723 1888 6.839124 TTAACAAGATCAATTGCATCCACT 57.161 33.333 0.00 0.00 33.28 4.00
1728 1893 6.732154 CGAGGATTAACAAGATCAATTGCAT 58.268 36.000 0.00 0.00 33.28 3.96
1731 1896 6.369059 AGCGAGGATTAACAAGATCAATTG 57.631 37.500 0.00 0.00 36.22 2.32
1740 1905 4.344102 AGCATAGGTAGCGAGGATTAACAA 59.656 41.667 0.00 0.00 37.01 2.83
1751 1916 3.308866 GGTACAAAACAGCATAGGTAGCG 59.691 47.826 0.00 0.00 37.01 4.26
1786 1957 8.146412 GGAATTGGGGAATTTTTCAGATGATAG 58.854 37.037 0.00 0.00 0.00 2.08
1791 1962 6.714278 CAAGGAATTGGGGAATTTTTCAGAT 58.286 36.000 0.00 0.00 0.00 2.90
1792 1963 5.512921 GCAAGGAATTGGGGAATTTTTCAGA 60.513 40.000 0.00 0.00 0.00 3.27
1802 1973 1.673767 AGAGAGCAAGGAATTGGGGA 58.326 50.000 0.00 0.00 0.00 4.81
1812 1983 3.812053 AGCGCCATAATTTAGAGAGCAAG 59.188 43.478 2.29 0.00 0.00 4.01
1822 1993 5.931146 TGTTTGAAATTGAGCGCCATAATTT 59.069 32.000 20.04 20.04 36.89 1.82
1831 2002 4.977963 ACAATCAGTGTTTGAAATTGAGCG 59.022 37.500 18.58 0.00 37.01 5.03
1873 2044 8.013947 GCAGCTCAATAGTAATATGATTGTGTG 58.986 37.037 0.00 0.00 33.27 3.82
1901 2072 5.163322 TGGTCATCAGGTGCAAATTTTTCTT 60.163 36.000 0.00 0.00 0.00 2.52
1918 2090 2.999355 GACTGACAGAAAGCTGGTCATC 59.001 50.000 10.08 7.50 46.60 2.92
1944 2116 4.825422 CTTGAGCAAGTCTAAGATGGTGA 58.175 43.478 2.11 0.00 33.87 4.02
1976 2148 1.284297 GCATGGCTTTTGTGGTTCGC 61.284 55.000 0.00 0.00 0.00 4.70
2007 2179 5.573337 AGATCAAGCTGAAATTAACTGCC 57.427 39.130 0.00 0.00 33.78 4.85
2020 2192 4.100373 ACTACTGAGGGAAAGATCAAGCT 58.900 43.478 0.00 0.00 0.00 3.74
2021 2193 4.479786 ACTACTGAGGGAAAGATCAAGC 57.520 45.455 0.00 0.00 0.00 4.01
2037 2209 9.998106 ATACAACATGTAAAGAACTCAACTACT 57.002 29.630 0.00 0.00 36.31 2.57
2070 2242 3.389221 CAACCGGAAGAATTTGTTTGGG 58.611 45.455 9.46 1.13 0.00 4.12
2115 2287 1.143073 ACCTGACTCCCCAAACTTCAC 59.857 52.381 0.00 0.00 0.00 3.18
2139 2318 4.561735 ATCTGGTTTGTGGTTTGTTACG 57.438 40.909 0.00 0.00 0.00 3.18
2371 2552 4.747540 TCGATGTGTTCAATTCCAAGTG 57.252 40.909 0.00 0.00 0.00 3.16
2376 2557 8.826710 TGTAATAGAATCGATGTGTTCAATTCC 58.173 33.333 0.00 0.00 0.00 3.01
2390 2571 6.798214 CGAAGAATCGGTTGTAATAGAATCG 58.202 40.000 0.00 0.00 45.32 3.34
2406 2587 5.221891 TGCAAGTGATTTAGCGAAGAATC 57.778 39.130 0.00 0.00 33.83 2.52
2407 2588 5.393962 GTTGCAAGTGATTTAGCGAAGAAT 58.606 37.500 0.00 0.00 0.00 2.40
2408 2589 4.320202 GGTTGCAAGTGATTTAGCGAAGAA 60.320 41.667 0.00 0.00 0.00 2.52
2409 2590 3.188460 GGTTGCAAGTGATTTAGCGAAGA 59.812 43.478 0.00 0.00 0.00 2.87
2410 2591 3.058293 TGGTTGCAAGTGATTTAGCGAAG 60.058 43.478 0.00 0.00 0.00 3.79
2411 2592 2.881513 TGGTTGCAAGTGATTTAGCGAA 59.118 40.909 0.00 0.00 0.00 4.70
2412 2593 2.499197 TGGTTGCAAGTGATTTAGCGA 58.501 42.857 0.00 0.00 0.00 4.93
2422 2603 3.562557 CGGTACTAGTTTTGGTTGCAAGT 59.437 43.478 0.00 0.00 0.00 3.16
2450 2631 1.340114 CCTTAGCACAAGACCTTCCCC 60.340 57.143 0.00 0.00 0.00 4.81
2451 2632 1.628846 TCCTTAGCACAAGACCTTCCC 59.371 52.381 0.00 0.00 0.00 3.97
2477 2658 5.554822 AACAAGAGAAGCGTACACAAAAA 57.445 34.783 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.