Multiple sequence alignment - TraesCS6D01G040300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G040300 chr6D 100.000 1624 0 0 911 2534 16390173 16388550 0.000000e+00 3000.0
1 TraesCS6D01G040300 chr6D 89.630 810 63 11 911 1703 16510673 16511478 0.000000e+00 1011.0
2 TraesCS6D01G040300 chr6D 100.000 521 0 0 1 521 16391083 16390563 0.000000e+00 963.0
3 TraesCS6D01G040300 chr6D 91.192 579 39 9 978 1549 16523196 16522623 0.000000e+00 776.0
4 TraesCS6D01G040300 chr6D 93.478 92 6 0 1755 1846 16511680 16511771 1.220000e-28 137.0
5 TraesCS6D01G040300 chr6B 90.640 844 60 14 911 1740 28925949 28926787 0.000000e+00 1103.0
6 TraesCS6D01G040300 chr6B 93.268 713 40 6 911 1619 28713974 28714682 0.000000e+00 1044.0
7 TraesCS6D01G040300 chr6B 89.556 833 70 15 911 1732 28517414 28516588 0.000000e+00 1040.0
8 TraesCS6D01G040300 chr6B 92.272 647 41 8 911 1553 28256712 28256071 0.000000e+00 909.0
9 TraesCS6D01G040300 chr6B 92.548 577 32 7 978 1549 28980244 28979674 0.000000e+00 817.0
10 TraesCS6D01G040300 chr6B 91.589 214 14 1 1767 1976 28516492 28516279 2.470000e-75 292.0
11 TraesCS6D01G040300 chr6B 95.973 149 6 0 1818 1966 28926821 28926969 2.520000e-60 243.0
12 TraesCS6D01G040300 chr6B 87.647 170 14 4 2042 2206 28715282 28715449 9.250000e-45 191.0
13 TraesCS6D01G040300 chr6B 89.189 148 16 0 2042 2189 59296026 59296173 4.300000e-43 185.0
14 TraesCS6D01G040300 chr6B 93.506 77 3 2 1879 1954 28715041 28715116 2.060000e-21 113.0
15 TraesCS6D01G040300 chr6B 94.737 38 2 0 1867 1904 58817744 58817781 2.720000e-05 60.2
16 TraesCS6D01G040300 chr6B 94.737 38 2 0 1867 1904 59101556 59101593 2.720000e-05 60.2
17 TraesCS6D01G040300 chr6A 90.088 797 64 12 911 1699 16700895 16701684 0.000000e+00 1020.0
18 TraesCS6D01G040300 chr6A 89.715 807 69 11 911 1704 16658775 16657970 0.000000e+00 1018.0
19 TraesCS6D01G040300 chr6A 90.957 575 45 5 978 1549 16720205 16719635 0.000000e+00 767.0
20 TraesCS6D01G040300 chr6A 88.494 591 47 14 1161 1732 16663133 16662545 0.000000e+00 695.0
21 TraesCS6D01G040300 chr6A 86.600 500 53 2 3 493 16659781 16659287 7.980000e-150 540.0
22 TraesCS6D01G040300 chr6A 83.333 198 14 5 1956 2140 16702065 16702256 5.610000e-37 165.0
23 TraesCS6D01G040300 chr1D 87.123 497 55 1 3 490 63350809 63351305 2.850000e-154 555.0
24 TraesCS6D01G040300 chr1B 86.145 498 58 4 3 490 101124130 101124626 6.210000e-146 527.0
25 TraesCS6D01G040300 chr3D 85.282 496 64 3 3 489 81204298 81203803 1.050000e-138 503.0
26 TraesCS6D01G040300 chr3D 95.527 313 9 2 2207 2516 12369088 12368778 1.750000e-136 496.0
27 TraesCS6D01G040300 chr2A 85.341 498 53 9 6 490 502898845 502899335 4.870000e-137 497.0
28 TraesCS6D01G040300 chr2A 93.498 323 15 4 2203 2522 585704271 585703952 2.280000e-130 475.0
29 TraesCS6D01G040300 chr2D 95.779 308 8 2 2210 2514 516860641 516860946 2.260000e-135 492.0
30 TraesCS6D01G040300 chr2D 95.779 308 8 2 2210 2514 591307405 591307100 2.260000e-135 492.0
31 TraesCS6D01G040300 chr7D 95.146 309 10 2 2209 2514 109361495 109361801 1.360000e-132 483.0
32 TraesCS6D01G040300 chr7D 85.307 456 56 5 4 450 146653237 146653690 6.390000e-126 460.0
33 TraesCS6D01G040300 chr5D 95.146 309 10 2 2209 2514 543670714 543671020 1.360000e-132 483.0
34 TraesCS6D01G040300 chr5D 94.855 311 10 3 2208 2514 415748685 415748993 4.900000e-132 481.0
35 TraesCS6D01G040300 chr5D 94.175 309 12 3 2211 2516 240835455 240835760 1.370000e-127 466.0
36 TraesCS6D01G040300 chr4D 95.146 309 9 3 2210 2515 501974334 501974639 1.360000e-132 483.0
37 TraesCS6D01G040300 chrUn 82.635 501 76 6 3 493 81274180 81273681 1.390000e-117 433.0
38 TraesCS6D01G040300 chr7A 85.410 329 48 0 3 331 148174932 148175260 2.410000e-90 342.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G040300 chr6D 16388550 16391083 2533 True 1981.500000 3000 100.000000 1 2534 2 chr6D.!!$R2 2533
1 TraesCS6D01G040300 chr6D 16522623 16523196 573 True 776.000000 776 91.192000 978 1549 1 chr6D.!!$R1 571
2 TraesCS6D01G040300 chr6D 16510673 16511771 1098 False 574.000000 1011 91.554000 911 1846 2 chr6D.!!$F1 935
3 TraesCS6D01G040300 chr6B 28256071 28256712 641 True 909.000000 909 92.272000 911 1553 1 chr6B.!!$R1 642
4 TraesCS6D01G040300 chr6B 28979674 28980244 570 True 817.000000 817 92.548000 978 1549 1 chr6B.!!$R2 571
5 TraesCS6D01G040300 chr6B 28925949 28926969 1020 False 673.000000 1103 93.306500 911 1966 2 chr6B.!!$F5 1055
6 TraesCS6D01G040300 chr6B 28516279 28517414 1135 True 666.000000 1040 90.572500 911 1976 2 chr6B.!!$R3 1065
7 TraesCS6D01G040300 chr6B 28713974 28715449 1475 False 449.333333 1044 91.473667 911 2206 3 chr6B.!!$F4 1295
8 TraesCS6D01G040300 chr6A 16719635 16720205 570 True 767.000000 767 90.957000 978 1549 1 chr6A.!!$R1 571
9 TraesCS6D01G040300 chr6A 16657970 16663133 5163 True 751.000000 1018 88.269667 3 1732 3 chr6A.!!$R2 1729
10 TraesCS6D01G040300 chr6A 16700895 16702256 1361 False 592.500000 1020 86.710500 911 2140 2 chr6A.!!$F1 1229

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 3534 0.179163 GCCGATGCTAGTTTTGTGGC 60.179 55.0 0.00 0.0 33.53 5.01 F
228 3579 0.651031 GTTGCCGCTAGGAATTCGTC 59.349 55.0 3.47 0.0 41.02 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1089 4815 0.831307 ATCGGCCCTTCTTGAGGTAC 59.169 55.0 0.00 0.0 44.71 3.34 R
2223 6264 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.0 2.64 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 3377 7.067008 ACGTGGAAAATTATTGGTCCTCTTATG 59.933 37.037 8.72 0.00 0.00 1.90
29 3380 6.262273 GGAAAATTATTGGTCCTCTTATGCGA 59.738 38.462 0.00 0.00 0.00 5.10
30 3381 6.867662 AAATTATTGGTCCTCTTATGCGAG 57.132 37.500 0.00 0.00 0.00 5.03
35 3386 2.139118 GGTCCTCTTATGCGAGCAATC 58.861 52.381 0.57 0.00 0.00 2.67
38 3389 2.168313 TCCTCTTATGCGAGCAATCACA 59.832 45.455 0.57 0.00 0.00 3.58
41 3392 3.333804 TCTTATGCGAGCAATCACAACA 58.666 40.909 0.57 0.00 0.00 3.33
45 3396 2.698803 TGCGAGCAATCACAACACTAT 58.301 42.857 0.00 0.00 0.00 2.12
48 3399 3.001330 GCGAGCAATCACAACACTATACC 59.999 47.826 0.00 0.00 0.00 2.73
61 3412 5.416271 ACACTATACCGTTGGATTCTTGT 57.584 39.130 0.00 0.00 0.00 3.16
83 3434 4.665833 AACAAAGGTAAGGAAAAGGTGC 57.334 40.909 0.00 0.00 0.00 5.01
88 3439 1.271217 GGTAAGGAAAAGGTGCGAGGT 60.271 52.381 0.00 0.00 0.00 3.85
96 3447 1.165270 AAGGTGCGAGGTGTTATTGC 58.835 50.000 0.00 0.00 0.00 3.56
135 3486 2.996631 AGAGCATGAGGTGTGGAAATC 58.003 47.619 0.00 0.00 0.00 2.17
141 3492 1.299976 AGGTGTGGAAATCGCCTCC 59.700 57.895 0.00 0.00 41.24 4.30
150 3501 1.672881 GAAATCGCCTCCTGTGGATTG 59.327 52.381 0.00 0.00 0.00 2.67
163 3514 6.115446 TCCTGTGGATTGTATCAAGATCAAC 58.885 40.000 0.00 0.00 0.00 3.18
165 3516 4.332543 TGTGGATTGTATCAAGATCAACGC 59.667 41.667 0.00 0.00 0.00 4.84
183 3534 0.179163 GCCGATGCTAGTTTTGTGGC 60.179 55.000 0.00 0.00 33.53 5.01
213 3564 4.912395 TGCCAGTGTGGGGGTTGC 62.912 66.667 0.00 0.00 38.19 4.17
225 3576 1.101635 GGGGTTGCCGCTAGGAATTC 61.102 60.000 0.00 0.00 41.02 2.17
226 3577 1.436983 GGGTTGCCGCTAGGAATTCG 61.437 60.000 0.00 0.00 41.02 3.34
227 3578 0.743345 GGTTGCCGCTAGGAATTCGT 60.743 55.000 5.87 5.87 41.02 3.85
228 3579 0.651031 GTTGCCGCTAGGAATTCGTC 59.349 55.000 3.47 0.00 41.02 4.20
241 3592 1.792006 ATTCGTCCGGCGGAATTATC 58.208 50.000 32.91 17.05 41.72 1.75
300 3651 2.513026 AATGAAGCTGAGCTCCGCGT 62.513 55.000 22.26 20.02 38.25 6.01
301 3652 3.184683 GAAGCTGAGCTCCGCGTG 61.185 66.667 21.90 3.70 38.25 5.34
311 3662 4.435436 TCCGCGTGTGCCTAGCAG 62.435 66.667 4.92 0.00 40.08 4.24
332 3683 6.495872 AGCAGGTCTTTATATCGGTATTACCA 59.504 38.462 13.22 1.14 38.47 3.25
337 3688 9.886132 GGTCTTTATATCGGTATTACCATTCAT 57.114 33.333 13.22 3.28 38.47 2.57
397 3748 6.686630 ACATTATTTCCTTGCGAATGACAAA 58.313 32.000 0.00 0.00 32.90 2.83
403 3754 3.003275 TCCTTGCGAATGACAAACTTGAC 59.997 43.478 0.00 0.00 0.00 3.18
405 3756 3.607422 TGCGAATGACAAACTTGACAG 57.393 42.857 0.00 0.00 36.40 3.51
408 3759 4.994217 TGCGAATGACAAACTTGACAGATA 59.006 37.500 0.00 0.00 36.40 1.98
440 3800 6.055231 AGAAAGAGATTCTGAGTATCGTCG 57.945 41.667 0.00 0.00 46.71 5.12
461 3821 5.853282 GTCGAGATGTTCCAAAATTTGAGTG 59.147 40.000 7.37 0.00 0.00 3.51
465 3825 7.352079 AGATGTTCCAAAATTTGAGTGTCTT 57.648 32.000 7.37 0.00 0.00 3.01
478 3838 8.970691 ATTTGAGTGTCTTGAAAATAAATCGG 57.029 30.769 0.00 0.00 0.00 4.18
479 3839 7.504924 TTGAGTGTCTTGAAAATAAATCGGT 57.495 32.000 0.00 0.00 0.00 4.69
480 3840 6.898041 TGAGTGTCTTGAAAATAAATCGGTG 58.102 36.000 0.00 0.00 0.00 4.94
490 3850 5.596836 AAATAAATCGGTGTGCCAATGAT 57.403 34.783 0.00 0.00 34.09 2.45
493 3853 1.838112 ATCGGTGTGCCAATGATGTT 58.162 45.000 0.00 0.00 34.09 2.71
494 3854 2.481289 TCGGTGTGCCAATGATGTTA 57.519 45.000 0.00 0.00 34.09 2.41
496 3856 1.132262 CGGTGTGCCAATGATGTTACC 59.868 52.381 0.00 0.00 34.09 2.85
508 4221 4.487714 TGATGTTACCTCTGATTGGTCC 57.512 45.455 0.00 0.00 38.88 4.46
512 4229 1.481871 TACCTCTGATTGGTCCGGAC 58.518 55.000 27.04 27.04 38.88 4.79
968 4688 2.593436 CCAACACCACACCCCGAC 60.593 66.667 0.00 0.00 0.00 4.79
974 4694 2.045340 CCACACCCCGACAATCCC 60.045 66.667 0.00 0.00 0.00 3.85
983 4706 4.137872 GACAATCCCCGTCGCCGA 62.138 66.667 0.00 0.00 35.63 5.54
1041 4767 1.371183 CAGGAAGAAGGCGGTGACA 59.629 57.895 0.00 0.00 0.00 3.58
1192 4919 1.440476 GAGGTATGCGGCCGTTACT 59.560 57.895 28.70 17.56 0.00 2.24
1197 4924 0.533491 TATGCGGCCGTTACTCTGTT 59.467 50.000 28.70 2.74 0.00 3.16
1206 4933 2.288825 CCGTTACTCTGTTCTTGAGCCA 60.289 50.000 0.00 0.00 35.12 4.75
1420 5165 0.726827 CGTCATCCCCAACATCAACG 59.273 55.000 0.00 0.00 0.00 4.10
1549 5304 2.448582 TAACCGCCCCCATAGCCTG 61.449 63.158 0.00 0.00 0.00 4.85
1650 5406 2.363680 AGATTCGTCGAGCAAGGATGAT 59.636 45.455 0.00 0.00 30.09 2.45
1709 5579 8.599055 GATGCAATCATCTCAATCTTGTACTA 57.401 34.615 0.00 0.00 44.70 1.82
1740 5610 8.939201 TTCTCTCTTCTAGCATCTGTAATTTG 57.061 34.615 0.00 0.00 0.00 2.32
1741 5611 8.298729 TCTCTCTTCTAGCATCTGTAATTTGA 57.701 34.615 0.00 0.00 0.00 2.69
1742 5612 8.412456 TCTCTCTTCTAGCATCTGTAATTTGAG 58.588 37.037 0.00 0.00 0.00 3.02
1743 5613 6.983307 TCTCTTCTAGCATCTGTAATTTGAGC 59.017 38.462 0.00 0.00 0.00 4.26
1744 5614 6.051717 TCTTCTAGCATCTGTAATTTGAGCC 58.948 40.000 0.00 0.00 0.00 4.70
1745 5615 5.357742 TCTAGCATCTGTAATTTGAGCCA 57.642 39.130 0.00 0.00 0.00 4.75
1746 5616 5.933617 TCTAGCATCTGTAATTTGAGCCAT 58.066 37.500 0.00 0.00 0.00 4.40
1747 5617 6.359804 TCTAGCATCTGTAATTTGAGCCATT 58.640 36.000 0.00 0.00 0.00 3.16
1749 5619 7.992608 TCTAGCATCTGTAATTTGAGCCATTTA 59.007 33.333 0.00 0.00 0.00 1.40
1752 5676 7.504911 AGCATCTGTAATTTGAGCCATTTATCT 59.495 33.333 0.00 0.00 0.00 1.98
1765 5689 4.214119 GCCATTTATCTAATCAAGCTGCGA 59.786 41.667 0.00 0.00 0.00 5.10
1770 5701 7.792374 TTTATCTAATCAAGCTGCGAGAAAT 57.208 32.000 0.00 0.00 0.00 2.17
1795 5726 8.484641 TTGAATCTATGAAGAACTAGCACTTG 57.515 34.615 6.72 0.00 34.73 3.16
1982 6005 0.179134 AGCCGACTACATGCGAACTC 60.179 55.000 0.00 0.00 0.00 3.01
2040 6063 3.126001 AGATCTGAGAACGTTTTGGCA 57.874 42.857 0.46 0.00 0.00 4.92
2049 6082 3.129638 AGAACGTTTTGGCAGCAAACTAA 59.870 39.130 0.46 0.00 32.79 2.24
2057 6090 7.254286 CGTTTTGGCAGCAAACTAAAATAACTT 60.254 33.333 11.73 0.00 32.79 2.66
2081 6114 2.030540 CAGGTGAGGTGCTGATTTTGTG 60.031 50.000 0.00 0.00 0.00 3.33
2082 6115 1.956477 GGTGAGGTGCTGATTTTGTGT 59.044 47.619 0.00 0.00 0.00 3.72
2086 6119 5.156355 GTGAGGTGCTGATTTTGTGTAATG 58.844 41.667 0.00 0.00 0.00 1.90
2140 6179 4.164204 AGATAGGATTAGTCAGGCCCTTC 58.836 47.826 0.00 0.00 0.00 3.46
2144 6183 3.054065 AGGATTAGTCAGGCCCTTCAAAG 60.054 47.826 0.00 0.00 0.00 2.77
2145 6184 3.054361 GGATTAGTCAGGCCCTTCAAAGA 60.054 47.826 0.00 0.00 0.00 2.52
2154 6194 2.355209 GGCCCTTCAAAGAGTCCAGTAG 60.355 54.545 0.00 0.00 0.00 2.57
2170 6210 6.202954 AGTCCAGTAGAAAAATGTTCTTCACG 59.797 38.462 0.00 0.00 0.00 4.35
2171 6211 6.202188 GTCCAGTAGAAAAATGTTCTTCACGA 59.798 38.462 0.00 0.00 0.00 4.35
2191 6232 1.004044 AGAGTGCACAAGATTCCTGGG 59.996 52.381 21.04 0.00 0.00 4.45
2196 6237 3.191371 GTGCACAAGATTCCTGGGTAAAG 59.809 47.826 13.17 0.00 0.00 1.85
2206 6247 3.486383 TCCTGGGTAAAGAAGCAAGTTG 58.514 45.455 0.00 0.00 0.00 3.16
2207 6248 3.137544 TCCTGGGTAAAGAAGCAAGTTGA 59.862 43.478 7.16 0.00 0.00 3.18
2208 6249 4.082125 CCTGGGTAAAGAAGCAAGTTGAT 58.918 43.478 7.16 0.00 0.00 2.57
2209 6250 4.524328 CCTGGGTAAAGAAGCAAGTTGATT 59.476 41.667 5.96 5.96 0.00 2.57
2210 6251 5.011023 CCTGGGTAAAGAAGCAAGTTGATTT 59.989 40.000 7.94 0.20 0.00 2.17
2211 6252 6.462909 CCTGGGTAAAGAAGCAAGTTGATTTT 60.463 38.462 7.94 0.00 0.00 1.82
2212 6253 6.883744 TGGGTAAAGAAGCAAGTTGATTTTT 58.116 32.000 7.94 5.80 0.00 1.94
2238 6279 3.917988 TGAGCATCAGTACAGACACAAG 58.082 45.455 0.00 0.00 42.56 3.16
2239 6280 2.670414 GAGCATCAGTACAGACACAAGC 59.330 50.000 0.00 0.00 33.17 4.01
2240 6281 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
2241 6282 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
2242 6283 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
2243 6284 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
2244 6285 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
2245 6286 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
2246 6287 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
2247 6288 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
2248 6289 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
2249 6290 4.327982 ACAGACACAAGCGCTCATATAT 57.672 40.909 12.06 0.00 0.00 0.86
2250 6291 5.453567 ACAGACACAAGCGCTCATATATA 57.546 39.130 12.06 0.00 0.00 0.86
2251 6292 5.223382 ACAGACACAAGCGCTCATATATAC 58.777 41.667 12.06 0.00 0.00 1.47
2252 6293 4.322009 CAGACACAAGCGCTCATATATACG 59.678 45.833 12.06 0.00 0.00 3.06
2260 6301 2.397478 CGCTCATATATACGCGCATACG 59.603 50.000 5.73 0.00 39.11 3.06
2270 6311 3.125607 CGCATACGCTCACCCCTA 58.874 61.111 0.00 0.00 35.30 3.53
2271 6312 1.666011 CGCATACGCTCACCCCTAT 59.334 57.895 0.00 0.00 35.30 2.57
2272 6313 0.667487 CGCATACGCTCACCCCTATG 60.667 60.000 0.00 0.00 35.30 2.23
2273 6314 0.679505 GCATACGCTCACCCCTATGA 59.320 55.000 0.00 0.00 34.30 2.15
2274 6315 1.070134 GCATACGCTCACCCCTATGAA 59.930 52.381 0.00 0.00 34.30 2.57
2275 6316 2.755650 CATACGCTCACCCCTATGAAC 58.244 52.381 0.00 0.00 0.00 3.18
2276 6317 0.742505 TACGCTCACCCCTATGAACG 59.257 55.000 0.00 0.00 42.48 3.95
2277 6318 1.883084 CGCTCACCCCTATGAACGC 60.883 63.158 0.00 0.00 32.08 4.84
2278 6319 1.220749 GCTCACCCCTATGAACGCA 59.779 57.895 0.00 0.00 0.00 5.24
2279 6320 1.090052 GCTCACCCCTATGAACGCAC 61.090 60.000 0.00 0.00 0.00 5.34
2280 6321 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
2281 6322 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
2282 6323 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
2283 6324 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
2284 6325 0.321210 CCCCTATGAACGCACACACA 60.321 55.000 0.00 0.00 0.00 3.72
2285 6326 0.796312 CCCTATGAACGCACACACAC 59.204 55.000 0.00 0.00 0.00 3.82
2286 6327 1.507562 CCTATGAACGCACACACACA 58.492 50.000 0.00 0.00 0.00 3.72
2287 6328 2.076100 CCTATGAACGCACACACACAT 58.924 47.619 0.00 0.00 0.00 3.21
2288 6329 3.258228 CCTATGAACGCACACACACATA 58.742 45.455 0.00 0.00 0.00 2.29
2289 6330 3.062099 CCTATGAACGCACACACACATAC 59.938 47.826 0.00 0.00 0.00 2.39
2290 6331 1.941325 TGAACGCACACACACATACA 58.059 45.000 0.00 0.00 0.00 2.29
2291 6332 1.595328 TGAACGCACACACACATACAC 59.405 47.619 0.00 0.00 0.00 2.90
2292 6333 1.864711 GAACGCACACACACATACACT 59.135 47.619 0.00 0.00 0.00 3.55
2293 6334 1.497991 ACGCACACACACATACACTC 58.502 50.000 0.00 0.00 0.00 3.51
2294 6335 1.068588 ACGCACACACACATACACTCT 59.931 47.619 0.00 0.00 0.00 3.24
2295 6336 2.295070 ACGCACACACACATACACTCTA 59.705 45.455 0.00 0.00 0.00 2.43
2296 6337 2.661675 CGCACACACACATACACTCTAC 59.338 50.000 0.00 0.00 0.00 2.59
2297 6338 2.993899 GCACACACACATACACTCTACC 59.006 50.000 0.00 0.00 0.00 3.18
2298 6339 3.585862 CACACACACATACACTCTACCC 58.414 50.000 0.00 0.00 0.00 3.69
2299 6340 2.565834 ACACACACATACACTCTACCCC 59.434 50.000 0.00 0.00 0.00 4.95
2300 6341 2.832129 CACACACATACACTCTACCCCT 59.168 50.000 0.00 0.00 0.00 4.79
2301 6342 4.021229 CACACACATACACTCTACCCCTA 58.979 47.826 0.00 0.00 0.00 3.53
2302 6343 4.649674 CACACACATACACTCTACCCCTAT 59.350 45.833 0.00 0.00 0.00 2.57
2303 6344 4.649674 ACACACATACACTCTACCCCTATG 59.350 45.833 0.00 0.00 0.00 2.23
2304 6345 4.893524 CACACATACACTCTACCCCTATGA 59.106 45.833 0.00 0.00 0.00 2.15
2305 6346 5.010112 CACACATACACTCTACCCCTATGAG 59.990 48.000 0.00 0.00 0.00 2.90
2306 6347 4.021894 CACATACACTCTACCCCTATGAGC 60.022 50.000 0.00 0.00 0.00 4.26
2307 6348 2.848678 ACACTCTACCCCTATGAGCA 57.151 50.000 0.00 0.00 0.00 4.26
2308 6349 2.389715 ACACTCTACCCCTATGAGCAC 58.610 52.381 0.00 0.00 0.00 4.40
2309 6350 1.689273 CACTCTACCCCTATGAGCACC 59.311 57.143 0.00 0.00 0.00 5.01
2310 6351 1.576272 ACTCTACCCCTATGAGCACCT 59.424 52.381 0.00 0.00 0.00 4.00
2311 6352 2.243810 CTCTACCCCTATGAGCACCTC 58.756 57.143 0.00 0.00 0.00 3.85
2312 6353 1.133136 TCTACCCCTATGAGCACCTCC 60.133 57.143 0.00 0.00 0.00 4.30
2313 6354 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
2314 6355 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
2315 6356 1.467678 CCCCTATGAGCACCTCCGAG 61.468 65.000 0.00 0.00 0.00 4.63
2316 6357 0.468214 CCCTATGAGCACCTCCGAGA 60.468 60.000 0.00 0.00 0.00 4.04
2317 6358 0.958091 CCTATGAGCACCTCCGAGAG 59.042 60.000 0.00 0.00 0.00 3.20
2318 6359 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
2319 6360 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
2320 6361 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
2321 6362 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
2322 6363 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
2323 6364 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
2324 6365 1.806568 CACCTCCGAGAGACTGAGC 59.193 63.158 0.00 0.00 0.00 4.26
2325 6366 0.679640 CACCTCCGAGAGACTGAGCT 60.680 60.000 0.00 0.00 0.00 4.09
2326 6367 0.679640 ACCTCCGAGAGACTGAGCTG 60.680 60.000 0.00 0.00 0.00 4.24
2327 6368 1.383456 CCTCCGAGAGACTGAGCTGG 61.383 65.000 0.00 0.00 0.00 4.85
2328 6369 2.003658 CTCCGAGAGACTGAGCTGGC 62.004 65.000 0.00 0.00 0.00 4.85
2329 6370 2.346541 CCGAGAGACTGAGCTGGCA 61.347 63.158 0.00 0.00 0.00 4.92
2330 6371 1.674764 CCGAGAGACTGAGCTGGCAT 61.675 60.000 0.00 0.00 0.00 4.40
2331 6372 1.028130 CGAGAGACTGAGCTGGCATA 58.972 55.000 0.00 0.00 0.00 3.14
2332 6373 1.612950 CGAGAGACTGAGCTGGCATAT 59.387 52.381 0.00 0.00 0.00 1.78
2333 6374 2.351641 CGAGAGACTGAGCTGGCATATC 60.352 54.545 0.00 0.00 0.00 1.63
2334 6375 2.627221 GAGAGACTGAGCTGGCATATCA 59.373 50.000 0.00 0.00 0.00 2.15
2335 6376 3.241156 AGAGACTGAGCTGGCATATCAT 58.759 45.455 0.00 0.00 0.00 2.45
2336 6377 3.258872 AGAGACTGAGCTGGCATATCATC 59.741 47.826 0.00 3.89 0.00 2.92
2337 6378 3.241156 AGACTGAGCTGGCATATCATCT 58.759 45.455 0.00 5.63 0.00 2.90
2338 6379 3.647113 AGACTGAGCTGGCATATCATCTT 59.353 43.478 0.00 0.00 0.00 2.40
2339 6380 3.741249 ACTGAGCTGGCATATCATCTTG 58.259 45.455 0.00 0.00 0.00 3.02
2340 6381 3.390311 ACTGAGCTGGCATATCATCTTGA 59.610 43.478 0.00 0.00 0.00 3.02
2341 6382 3.997681 CTGAGCTGGCATATCATCTTGAG 59.002 47.826 0.00 0.00 0.00 3.02
2342 6383 3.644738 TGAGCTGGCATATCATCTTGAGA 59.355 43.478 0.00 0.00 0.00 3.27
2343 6384 4.286291 TGAGCTGGCATATCATCTTGAGAT 59.714 41.667 0.00 0.00 34.56 2.75
2344 6385 5.221864 TGAGCTGGCATATCATCTTGAGATT 60.222 40.000 0.00 0.00 31.21 2.40
2345 6386 5.632118 AGCTGGCATATCATCTTGAGATTT 58.368 37.500 0.00 0.00 31.21 2.17
2346 6387 6.776744 AGCTGGCATATCATCTTGAGATTTA 58.223 36.000 0.00 0.00 31.21 1.40
2347 6388 6.654161 AGCTGGCATATCATCTTGAGATTTAC 59.346 38.462 0.00 0.00 31.21 2.01
2348 6389 6.401903 GCTGGCATATCATCTTGAGATTTACG 60.402 42.308 0.00 0.00 31.21 3.18
2349 6390 6.758254 TGGCATATCATCTTGAGATTTACGA 58.242 36.000 0.00 0.00 31.21 3.43
2350 6391 7.216494 TGGCATATCATCTTGAGATTTACGAA 58.784 34.615 0.00 0.00 31.21 3.85
2351 6392 7.386025 TGGCATATCATCTTGAGATTTACGAAG 59.614 37.037 0.00 0.00 31.21 3.79
2352 6393 7.232994 GCATATCATCTTGAGATTTACGAAGC 58.767 38.462 0.00 0.00 31.21 3.86
2353 6394 7.623089 GCATATCATCTTGAGATTTACGAAGCC 60.623 40.741 0.00 0.00 31.21 4.35
2354 6395 5.084818 TCATCTTGAGATTTACGAAGCCA 57.915 39.130 0.00 0.00 31.21 4.75
2355 6396 4.870426 TCATCTTGAGATTTACGAAGCCAC 59.130 41.667 0.00 0.00 31.21 5.01
2356 6397 3.596214 TCTTGAGATTTACGAAGCCACC 58.404 45.455 0.00 0.00 0.00 4.61
2357 6398 3.007506 TCTTGAGATTTACGAAGCCACCA 59.992 43.478 0.00 0.00 0.00 4.17
2358 6399 3.627395 TGAGATTTACGAAGCCACCAT 57.373 42.857 0.00 0.00 0.00 3.55
2359 6400 4.746535 TGAGATTTACGAAGCCACCATA 57.253 40.909 0.00 0.00 0.00 2.74
2360 6401 4.693283 TGAGATTTACGAAGCCACCATAG 58.307 43.478 0.00 0.00 0.00 2.23
2361 6402 4.058817 GAGATTTACGAAGCCACCATAGG 58.941 47.826 0.00 0.00 0.00 2.57
2369 6410 3.849951 CCACCATAGGCGCCTCGT 61.850 66.667 36.73 24.45 0.00 4.18
2370 6411 2.279517 CACCATAGGCGCCTCGTC 60.280 66.667 36.73 1.08 0.00 4.20
2371 6412 3.900892 ACCATAGGCGCCTCGTCG 61.901 66.667 36.73 21.01 36.23 5.12
2372 6413 3.900892 CCATAGGCGCCTCGTCGT 61.901 66.667 36.73 11.27 36.23 4.34
2373 6414 2.353607 CATAGGCGCCTCGTCGTC 60.354 66.667 36.73 0.00 36.23 4.20
2374 6415 3.950254 ATAGGCGCCTCGTCGTCG 61.950 66.667 36.73 0.00 39.34 5.12
2397 6438 1.797025 GGAACGTCTCCCACTGAAAG 58.203 55.000 0.00 0.00 38.44 2.62
2398 6439 1.149148 GAACGTCTCCCACTGAAAGC 58.851 55.000 0.00 0.00 37.60 3.51
2399 6440 0.600255 AACGTCTCCCACTGAAAGCG 60.600 55.000 0.00 0.00 37.60 4.68
2400 6441 2.383527 CGTCTCCCACTGAAAGCGC 61.384 63.158 0.00 0.00 37.60 5.92
2401 6442 1.301716 GTCTCCCACTGAAAGCGCA 60.302 57.895 11.47 0.00 37.60 6.09
2402 6443 0.674895 GTCTCCCACTGAAAGCGCAT 60.675 55.000 11.47 0.00 37.60 4.73
2403 6444 0.391661 TCTCCCACTGAAAGCGCATC 60.392 55.000 11.47 8.39 37.60 3.91
2404 6445 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
2415 6456 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
2416 6457 2.180204 CGCATCGCCGGAAATCCTT 61.180 57.895 5.05 0.00 0.00 3.36
2417 6458 0.878523 CGCATCGCCGGAAATCCTTA 60.879 55.000 5.05 0.00 0.00 2.69
2418 6459 1.305201 GCATCGCCGGAAATCCTTAA 58.695 50.000 5.05 0.00 0.00 1.85
2419 6460 1.673920 GCATCGCCGGAAATCCTTAAA 59.326 47.619 5.05 0.00 0.00 1.52
2420 6461 2.293399 GCATCGCCGGAAATCCTTAAAT 59.707 45.455 5.05 0.00 0.00 1.40
2421 6462 3.500680 GCATCGCCGGAAATCCTTAAATA 59.499 43.478 5.05 0.00 0.00 1.40
2422 6463 4.023536 GCATCGCCGGAAATCCTTAAATAA 60.024 41.667 5.05 0.00 0.00 1.40
2423 6464 5.506649 GCATCGCCGGAAATCCTTAAATAAA 60.507 40.000 5.05 0.00 0.00 1.40
2424 6465 6.677913 CATCGCCGGAAATCCTTAAATAAAT 58.322 36.000 5.05 0.00 0.00 1.40
2425 6466 6.308371 TCGCCGGAAATCCTTAAATAAATC 57.692 37.500 5.05 0.00 0.00 2.17
2426 6467 5.239963 TCGCCGGAAATCCTTAAATAAATCC 59.760 40.000 5.05 0.00 0.00 3.01
2427 6468 5.009210 CGCCGGAAATCCTTAAATAAATCCA 59.991 40.000 5.05 0.00 0.00 3.41
2428 6469 6.447162 GCCGGAAATCCTTAAATAAATCCAG 58.553 40.000 5.05 0.00 0.00 3.86
2429 6470 6.516693 GCCGGAAATCCTTAAATAAATCCAGG 60.517 42.308 5.05 0.00 0.00 4.45
2430 6471 6.775629 CCGGAAATCCTTAAATAAATCCAGGA 59.224 38.462 0.00 0.00 38.04 3.86
2431 6472 7.286775 CCGGAAATCCTTAAATAAATCCAGGAA 59.713 37.037 0.00 0.00 37.20 3.36
2432 6473 8.860088 CGGAAATCCTTAAATAAATCCAGGAAT 58.140 33.333 0.00 0.00 37.20 3.01
2438 6479 8.792633 TCCTTAAATAAATCCAGGAATAATGCG 58.207 33.333 0.00 0.00 30.33 4.73
2439 6480 8.792633 CCTTAAATAAATCCAGGAATAATGCGA 58.207 33.333 0.00 0.00 0.00 5.10
2440 6481 9.831737 CTTAAATAAATCCAGGAATAATGCGAG 57.168 33.333 0.00 0.00 0.00 5.03
2441 6482 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
2442 6483 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
2443 6484 1.953559 TCCAGGAATAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
2444 6485 0.947244 CCAGGAATAATGCGAGCACC 59.053 55.000 0.00 0.00 0.00 5.01
2445 6486 1.667236 CAGGAATAATGCGAGCACCA 58.333 50.000 0.00 0.00 0.00 4.17
2446 6487 1.600957 CAGGAATAATGCGAGCACCAG 59.399 52.381 0.00 0.00 0.00 4.00
2447 6488 0.947244 GGAATAATGCGAGCACCAGG 59.053 55.000 0.00 0.00 0.00 4.45
2448 6489 1.475034 GGAATAATGCGAGCACCAGGA 60.475 52.381 0.00 0.00 0.00 3.86
2449 6490 2.498167 GAATAATGCGAGCACCAGGAT 58.502 47.619 0.00 0.00 0.00 3.24
2450 6491 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
2451 6492 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
2452 6493 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
2453 6494 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
2454 6495 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
2455 6496 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
2456 6497 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
2457 6498 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
2458 6499 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
2475 6516 2.938956 CCTGATGGGTTGAGGATACC 57.061 55.000 0.00 0.00 34.82 2.73
2476 6517 2.126882 CCTGATGGGTTGAGGATACCA 58.873 52.381 0.00 0.00 37.40 3.25
2477 6518 2.158755 CCTGATGGGTTGAGGATACCAC 60.159 54.545 0.00 0.00 37.40 4.16
2478 6519 2.774234 CTGATGGGTTGAGGATACCACT 59.226 50.000 0.00 0.00 37.40 4.00
2479 6520 2.505407 TGATGGGTTGAGGATACCACTG 59.495 50.000 0.00 0.00 37.40 3.66
2480 6521 2.038863 TGGGTTGAGGATACCACTGT 57.961 50.000 0.00 0.00 37.40 3.55
2481 6522 1.906574 TGGGTTGAGGATACCACTGTC 59.093 52.381 0.00 0.00 37.40 3.51
2482 6523 1.209747 GGGTTGAGGATACCACTGTCC 59.790 57.143 0.00 0.00 37.40 4.02
2483 6524 1.906574 GGTTGAGGATACCACTGTCCA 59.093 52.381 0.00 0.00 36.96 4.02
2484 6525 2.354805 GGTTGAGGATACCACTGTCCAC 60.355 54.545 0.00 0.00 36.96 4.02
2485 6526 1.568504 TGAGGATACCACTGTCCACC 58.431 55.000 0.00 0.00 36.96 4.61
2486 6527 1.078823 TGAGGATACCACTGTCCACCT 59.921 52.381 0.00 0.00 36.96 4.00
2487 6528 2.313643 TGAGGATACCACTGTCCACCTA 59.686 50.000 0.00 0.00 36.96 3.08
2488 6529 3.245839 TGAGGATACCACTGTCCACCTAA 60.246 47.826 0.00 0.00 36.96 2.69
2489 6530 3.105283 AGGATACCACTGTCCACCTAAC 58.895 50.000 0.00 0.00 36.96 2.34
2490 6531 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
2491 6532 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
2492 6533 1.742308 ACCACTGTCCACCTAACCAT 58.258 50.000 0.00 0.00 0.00 3.55
2493 6534 1.628846 ACCACTGTCCACCTAACCATC 59.371 52.381 0.00 0.00 0.00 3.51
2494 6535 1.909302 CCACTGTCCACCTAACCATCT 59.091 52.381 0.00 0.00 0.00 2.90
2495 6536 2.093447 CCACTGTCCACCTAACCATCTC 60.093 54.545 0.00 0.00 0.00 2.75
2496 6537 2.567169 CACTGTCCACCTAACCATCTCA 59.433 50.000 0.00 0.00 0.00 3.27
2497 6538 3.007940 CACTGTCCACCTAACCATCTCAA 59.992 47.826 0.00 0.00 0.00 3.02
2498 6539 3.008049 ACTGTCCACCTAACCATCTCAAC 59.992 47.826 0.00 0.00 0.00 3.18
2499 6540 2.304761 TGTCCACCTAACCATCTCAACC 59.695 50.000 0.00 0.00 0.00 3.77
2500 6541 2.304761 GTCCACCTAACCATCTCAACCA 59.695 50.000 0.00 0.00 0.00 3.67
2501 6542 2.304761 TCCACCTAACCATCTCAACCAC 59.695 50.000 0.00 0.00 0.00 4.16
2502 6543 2.039746 CCACCTAACCATCTCAACCACA 59.960 50.000 0.00 0.00 0.00 4.17
2503 6544 3.338249 CACCTAACCATCTCAACCACAG 58.662 50.000 0.00 0.00 0.00 3.66
2504 6545 2.305927 ACCTAACCATCTCAACCACAGG 59.694 50.000 0.00 0.00 0.00 4.00
2505 6546 2.305927 CCTAACCATCTCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
2514 6555 2.244000 AACCACAGGTTGATTCGCG 58.756 52.632 0.00 0.00 45.07 5.87
2515 6556 0.250124 AACCACAGGTTGATTCGCGA 60.250 50.000 3.71 3.71 45.07 5.87
2516 6557 0.250124 ACCACAGGTTGATTCGCGAA 60.250 50.000 25.66 25.66 27.29 4.70
2517 6558 0.443869 CCACAGGTTGATTCGCGAAG 59.556 55.000 27.20 13.64 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.897377 AAGAGGACCAATAATTTTCCACG 57.103 39.130 0.00 0.00 0.00 4.94
2 3 7.203218 GCATAAGAGGACCAATAATTTTCCAC 58.797 38.462 0.00 0.00 0.00 4.02
3 4 6.039270 CGCATAAGAGGACCAATAATTTTCCA 59.961 38.462 0.00 0.00 0.00 3.53
4 5 6.262273 TCGCATAAGAGGACCAATAATTTTCC 59.738 38.462 0.00 0.00 0.00 3.13
5 6 7.259290 TCGCATAAGAGGACCAATAATTTTC 57.741 36.000 0.00 0.00 0.00 2.29
6 7 6.238759 GCTCGCATAAGAGGACCAATAATTTT 60.239 38.462 0.00 0.00 38.63 1.82
10 3361 3.133901 TGCTCGCATAAGAGGACCAATAA 59.866 43.478 0.00 0.00 38.63 1.40
26 3377 3.001330 GGTATAGTGTTGTGATTGCTCGC 59.999 47.826 0.00 0.00 0.00 5.03
29 3380 4.202245 ACGGTATAGTGTTGTGATTGCT 57.798 40.909 0.00 0.00 0.00 3.91
30 3381 4.436852 CCAACGGTATAGTGTTGTGATTGC 60.437 45.833 13.24 0.00 42.99 3.56
35 3386 5.175859 AGAATCCAACGGTATAGTGTTGTG 58.824 41.667 13.24 7.33 42.99 3.33
38 3389 5.801380 ACAAGAATCCAACGGTATAGTGTT 58.199 37.500 0.00 0.00 0.00 3.32
41 3392 6.938507 TGTTACAAGAATCCAACGGTATAGT 58.061 36.000 0.00 0.00 0.00 2.12
45 3396 5.470777 CCTTTGTTACAAGAATCCAACGGTA 59.529 40.000 0.00 0.00 0.00 4.02
48 3399 5.432885 ACCTTTGTTACAAGAATCCAACG 57.567 39.130 0.00 0.00 0.00 4.10
61 3412 4.276431 CGCACCTTTTCCTTACCTTTGTTA 59.724 41.667 0.00 0.00 0.00 2.41
83 3434 2.223249 CCAAATCCGCAATAACACCTCG 60.223 50.000 0.00 0.00 0.00 4.63
88 3439 2.223456 CGATGCCAAATCCGCAATAACA 60.223 45.455 0.00 0.00 40.22 2.41
96 3447 0.808125 TTTCACCGATGCCAAATCCG 59.192 50.000 0.00 0.00 0.00 4.18
135 3486 1.138859 TGATACAATCCACAGGAGGCG 59.861 52.381 0.00 0.00 34.05 5.52
141 3492 5.503031 GCGTTGATCTTGATACAATCCACAG 60.503 44.000 0.00 0.00 0.00 3.66
150 3501 2.096713 GCATCGGCGTTGATCTTGATAC 60.097 50.000 21.15 0.00 0.00 2.24
165 3516 0.096976 CGCCACAAAACTAGCATCGG 59.903 55.000 0.00 0.00 0.00 4.18
183 3534 3.001634 CACACTGGCAGCATTAATACTCG 59.998 47.826 15.89 0.00 0.00 4.18
213 3564 1.299926 CCGGACGAATTCCTAGCGG 60.300 63.158 0.00 0.00 43.25 5.52
225 3576 0.790207 CATGATAATTCCGCCGGACG 59.210 55.000 4.70 8.73 43.15 4.79
226 3577 1.798813 GACATGATAATTCCGCCGGAC 59.201 52.381 4.70 0.00 0.00 4.79
227 3578 1.270625 GGACATGATAATTCCGCCGGA 60.271 52.381 5.05 0.00 0.00 5.14
228 3579 1.156736 GGACATGATAATTCCGCCGG 58.843 55.000 0.00 0.00 0.00 6.13
229 3580 2.069273 GAGGACATGATAATTCCGCCG 58.931 52.381 0.00 0.00 34.31 6.46
234 3585 4.336889 TCCCACGAGGACATGATAATTC 57.663 45.455 0.00 0.00 40.93 2.17
261 3612 7.754851 TCATTGACACTAGTACACAGACTAA 57.245 36.000 0.00 0.00 31.57 2.24
263 3614 6.650427 TTCATTGACACTAGTACACAGACT 57.350 37.500 0.00 0.00 0.00 3.24
266 3617 5.347093 CAGCTTCATTGACACTAGTACACAG 59.653 44.000 0.00 0.00 0.00 3.66
267 3618 5.010617 TCAGCTTCATTGACACTAGTACACA 59.989 40.000 0.00 0.00 0.00 3.72
300 3651 4.262036 CGATATAAAGACCTGCTAGGCACA 60.262 45.833 2.50 0.00 39.63 4.57
301 3652 4.238514 CGATATAAAGACCTGCTAGGCAC 58.761 47.826 2.50 0.00 39.63 5.01
311 3662 9.886132 ATGAATGGTAATACCGATATAAAGACC 57.114 33.333 4.83 0.00 42.58 3.85
352 3703 5.237815 TGTACAAAAGCACGATCATTCTCT 58.762 37.500 0.00 0.00 0.00 3.10
353 3704 5.530519 TGTACAAAAGCACGATCATTCTC 57.469 39.130 0.00 0.00 0.00 2.87
357 3708 7.915397 GGAAATAATGTACAAAAGCACGATCAT 59.085 33.333 0.00 0.00 0.00 2.45
361 3712 6.811253 AGGAAATAATGTACAAAAGCACGA 57.189 33.333 0.00 0.00 0.00 4.35
362 3713 6.183359 GCAAGGAAATAATGTACAAAAGCACG 60.183 38.462 0.00 0.00 0.00 5.34
370 3721 6.372937 TGTCATTCGCAAGGAAATAATGTACA 59.627 34.615 0.00 0.00 38.36 2.90
408 3759 8.081517 ACTCAGAATCTCTTTCTTCAGATCAT 57.918 34.615 0.00 0.00 42.15 2.45
415 3775 6.631238 CGACGATACTCAGAATCTCTTTCTTC 59.369 42.308 0.00 0.00 42.15 2.87
425 3785 5.278071 GGAACATCTCGACGATACTCAGAAT 60.278 44.000 0.00 0.00 0.00 2.40
440 3800 6.974965 AGACACTCAAATTTTGGAACATCTC 58.025 36.000 9.18 0.00 39.30 2.75
461 3821 4.857037 GGCACACCGATTTATTTTCAAGAC 59.143 41.667 0.00 0.00 0.00 3.01
465 3825 4.855715 TTGGCACACCGATTTATTTTCA 57.144 36.364 0.00 0.00 39.29 2.69
478 3838 3.127548 CAGAGGTAACATCATTGGCACAC 59.872 47.826 0.00 0.00 37.13 3.82
479 3839 3.008923 TCAGAGGTAACATCATTGGCACA 59.991 43.478 0.00 0.00 41.41 4.57
480 3840 3.609853 TCAGAGGTAACATCATTGGCAC 58.390 45.455 0.00 0.00 41.41 5.01
490 3850 1.553248 CCGGACCAATCAGAGGTAACA 59.447 52.381 0.00 0.00 40.09 2.41
493 3853 1.481871 GTCCGGACCAATCAGAGGTA 58.518 55.000 24.75 0.00 40.09 3.08
494 3854 2.287829 GTCCGGACCAATCAGAGGT 58.712 57.895 24.75 0.00 43.46 3.85
925 4642 4.819761 GCGCTGGATCGGAGTGCA 62.820 66.667 18.97 0.00 44.70 4.57
983 4706 2.751806 GCCATCTTGCTTGCTACTTCTT 59.248 45.455 0.00 0.00 0.00 2.52
1089 4815 0.831307 ATCGGCCCTTCTTGAGGTAC 59.169 55.000 0.00 0.00 44.71 3.34
1184 4910 1.727335 GCTCAAGAACAGAGTAACGGC 59.273 52.381 0.00 0.00 35.55 5.68
1186 4912 2.731976 GTGGCTCAAGAACAGAGTAACG 59.268 50.000 0.00 0.00 35.55 3.18
1187 4913 3.743396 CAGTGGCTCAAGAACAGAGTAAC 59.257 47.826 0.00 0.00 35.55 2.50
1192 4919 3.388024 AGTAACAGTGGCTCAAGAACAGA 59.612 43.478 0.00 0.00 0.00 3.41
1197 4924 2.965831 ACAGAGTAACAGTGGCTCAAGA 59.034 45.455 12.12 0.00 0.00 3.02
1206 4933 2.706190 AGGGCAAGAACAGAGTAACAGT 59.294 45.455 0.00 0.00 0.00 3.55
1404 5149 1.809207 GGCGTTGATGTTGGGGATG 59.191 57.895 0.00 0.00 0.00 3.51
1549 5304 1.340017 TGGATCTAAGCAACACTGGCC 60.340 52.381 0.00 0.00 0.00 5.36
1650 5406 9.671279 ATTGTCACAGAAATCACAGATACAATA 57.329 29.630 0.00 0.00 33.42 1.90
1695 5451 8.918961 AGAGAATTTCGTAGTACAAGATTGAG 57.081 34.615 0.38 0.00 0.00 3.02
1709 5579 6.127479 ACAGATGCTAGAAGAGAGAATTTCGT 60.127 38.462 0.00 0.00 0.00 3.85
1740 5610 5.616424 CGCAGCTTGATTAGATAAATGGCTC 60.616 44.000 0.00 0.00 0.00 4.70
1741 5611 4.214971 CGCAGCTTGATTAGATAAATGGCT 59.785 41.667 0.00 0.00 0.00 4.75
1742 5612 4.214119 TCGCAGCTTGATTAGATAAATGGC 59.786 41.667 0.00 0.00 0.00 4.40
1743 5613 5.698089 TCTCGCAGCTTGATTAGATAAATGG 59.302 40.000 0.00 0.00 0.00 3.16
1744 5614 6.775939 TCTCGCAGCTTGATTAGATAAATG 57.224 37.500 0.00 0.00 0.00 2.32
1745 5615 7.792374 TTTCTCGCAGCTTGATTAGATAAAT 57.208 32.000 0.00 0.00 0.00 1.40
1746 5616 7.792374 ATTTCTCGCAGCTTGATTAGATAAA 57.208 32.000 0.00 0.00 0.00 1.40
1747 5617 7.495606 TCAATTTCTCGCAGCTTGATTAGATAA 59.504 33.333 0.00 0.00 0.00 1.75
1749 5619 5.819379 TCAATTTCTCGCAGCTTGATTAGAT 59.181 36.000 0.00 0.00 0.00 1.98
1752 5676 5.878332 TTCAATTTCTCGCAGCTTGATTA 57.122 34.783 0.00 0.00 0.00 1.75
1765 5689 9.896645 TGCTAGTTCTTCATAGATTCAATTTCT 57.103 29.630 0.00 0.00 0.00 2.52
1770 5701 7.550551 CCAAGTGCTAGTTCTTCATAGATTCAA 59.449 37.037 0.00 0.00 0.00 2.69
1795 5726 1.782752 TGGAGGATGATTGGGAATCCC 59.217 52.381 12.39 12.39 42.97 3.85
1982 6005 6.215121 TGCATCAAACAACTATCCAAACTTG 58.785 36.000 0.00 0.00 0.00 3.16
2019 6042 4.245660 CTGCCAAAACGTTCTCAGATCTA 58.754 43.478 0.00 0.00 0.00 1.98
2023 6046 0.944386 GCTGCCAAAACGTTCTCAGA 59.056 50.000 17.45 0.00 0.00 3.27
2028 6051 1.921243 AGTTTGCTGCCAAAACGTTC 58.079 45.000 0.00 0.00 42.19 3.95
2040 6063 5.304357 ACCTGGCAAGTTATTTTAGTTTGCT 59.696 36.000 7.34 0.00 42.68 3.91
2049 6082 3.157087 CACCTCACCTGGCAAGTTATTT 58.843 45.455 0.00 0.00 0.00 1.40
2057 6090 1.782201 AATCAGCACCTCACCTGGCA 61.782 55.000 0.00 0.00 0.00 4.92
2081 6114 6.727824 TCTGTTTCTGCTTTAGCTCATTAC 57.272 37.500 3.10 0.00 42.66 1.89
2082 6115 9.618890 AATATCTGTTTCTGCTTTAGCTCATTA 57.381 29.630 3.10 0.00 42.66 1.90
2086 6119 7.493971 TCTCAATATCTGTTTCTGCTTTAGCTC 59.506 37.037 3.10 0.00 42.66 4.09
2140 6179 8.159344 AGAACATTTTTCTACTGGACTCTTTG 57.841 34.615 0.00 0.00 0.00 2.77
2144 6183 7.569591 CGTGAAGAACATTTTTCTACTGGACTC 60.570 40.741 0.00 0.00 0.00 3.36
2145 6184 6.202954 CGTGAAGAACATTTTTCTACTGGACT 59.797 38.462 0.00 0.00 0.00 3.85
2154 6194 4.906437 GCACTCTCGTGAAGAACATTTTTC 59.094 41.667 0.00 0.00 43.97 2.29
2170 6210 2.354259 CCAGGAATCTTGTGCACTCTC 58.646 52.381 19.41 6.99 0.00 3.20
2171 6211 1.004044 CCCAGGAATCTTGTGCACTCT 59.996 52.381 19.41 0.00 0.00 3.24
2213 6254 5.122519 TGTGTCTGTACTGATGCTCAAAAA 58.877 37.500 5.69 0.00 0.00 1.94
2214 6255 4.702831 TGTGTCTGTACTGATGCTCAAAA 58.297 39.130 5.69 0.00 0.00 2.44
2215 6256 4.335400 TGTGTCTGTACTGATGCTCAAA 57.665 40.909 5.69 0.00 0.00 2.69
2216 6257 4.309933 CTTGTGTCTGTACTGATGCTCAA 58.690 43.478 5.69 6.69 0.00 3.02
2217 6258 3.862264 GCTTGTGTCTGTACTGATGCTCA 60.862 47.826 5.69 0.00 0.00 4.26
2218 6259 2.670414 GCTTGTGTCTGTACTGATGCTC 59.330 50.000 5.69 0.00 0.00 4.26
2219 6260 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
2220 6261 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
2221 6262 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
2222 6263 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
2223 6264 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
2224 6265 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
2225 6266 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
2226 6267 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
2227 6268 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
2228 6269 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
2229 6270 4.322009 CGTATATATGAGCGCTTGTGTCTG 59.678 45.833 13.26 0.00 0.00 3.51
2230 6271 4.476862 CGTATATATGAGCGCTTGTGTCT 58.523 43.478 13.26 0.00 0.00 3.41
2231 6272 3.059570 GCGTATATATGAGCGCTTGTGTC 59.940 47.826 13.26 0.00 45.48 3.67
2232 6273 2.987149 GCGTATATATGAGCGCTTGTGT 59.013 45.455 13.26 4.27 45.48 3.72
2233 6274 2.026860 CGCGTATATATGAGCGCTTGTG 59.973 50.000 13.26 6.56 46.56 3.33
2234 6275 2.251040 CGCGTATATATGAGCGCTTGT 58.749 47.619 13.26 5.98 46.56 3.16
2235 6276 2.959586 CGCGTATATATGAGCGCTTG 57.040 50.000 13.26 7.35 46.56 4.01
2254 6295 0.679505 TCATAGGGGTGAGCGTATGC 59.320 55.000 0.00 0.00 43.24 3.14
2255 6296 2.755650 GTTCATAGGGGTGAGCGTATG 58.244 52.381 0.00 0.00 0.00 2.39
2256 6297 1.340248 CGTTCATAGGGGTGAGCGTAT 59.660 52.381 5.22 0.00 44.41 3.06
2257 6298 0.742505 CGTTCATAGGGGTGAGCGTA 59.257 55.000 5.22 0.00 44.41 4.42
2258 6299 1.515954 CGTTCATAGGGGTGAGCGT 59.484 57.895 5.22 0.00 44.41 5.07
2259 6300 4.420143 CGTTCATAGGGGTGAGCG 57.580 61.111 0.00 0.00 44.14 5.03
2260 6301 1.090052 GTGCGTTCATAGGGGTGAGC 61.090 60.000 0.00 0.00 0.00 4.26
2261 6302 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
2262 6303 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
2263 6304 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
2264 6305 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
2265 6306 0.321210 TGTGTGTGCGTTCATAGGGG 60.321 55.000 0.00 0.00 0.00 4.79
2266 6307 0.796312 GTGTGTGTGCGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
2267 6308 1.507562 TGTGTGTGTGCGTTCATAGG 58.492 50.000 0.00 0.00 0.00 2.57
2268 6309 3.677596 TGTATGTGTGTGTGCGTTCATAG 59.322 43.478 0.00 0.00 0.00 2.23
2269 6310 3.430556 GTGTATGTGTGTGTGCGTTCATA 59.569 43.478 0.00 0.00 0.00 2.15
2270 6311 2.223144 GTGTATGTGTGTGTGCGTTCAT 59.777 45.455 0.00 0.00 0.00 2.57
2271 6312 1.595328 GTGTATGTGTGTGTGCGTTCA 59.405 47.619 0.00 0.00 0.00 3.18
2272 6313 1.864711 AGTGTATGTGTGTGTGCGTTC 59.135 47.619 0.00 0.00 0.00 3.95
2273 6314 1.864711 GAGTGTATGTGTGTGTGCGTT 59.135 47.619 0.00 0.00 0.00 4.84
2274 6315 1.068588 AGAGTGTATGTGTGTGTGCGT 59.931 47.619 0.00 0.00 0.00 5.24
2275 6316 1.783284 AGAGTGTATGTGTGTGTGCG 58.217 50.000 0.00 0.00 0.00 5.34
2276 6317 2.993899 GGTAGAGTGTATGTGTGTGTGC 59.006 50.000 0.00 0.00 0.00 4.57
2277 6318 3.585862 GGGTAGAGTGTATGTGTGTGTG 58.414 50.000 0.00 0.00 0.00 3.82
2278 6319 2.565834 GGGGTAGAGTGTATGTGTGTGT 59.434 50.000 0.00 0.00 0.00 3.72
2279 6320 2.832129 AGGGGTAGAGTGTATGTGTGTG 59.168 50.000 0.00 0.00 0.00 3.82
2280 6321 3.185880 AGGGGTAGAGTGTATGTGTGT 57.814 47.619 0.00 0.00 0.00 3.72
2281 6322 4.893524 TCATAGGGGTAGAGTGTATGTGTG 59.106 45.833 0.00 0.00 0.00 3.82
2282 6323 5.138758 TCATAGGGGTAGAGTGTATGTGT 57.861 43.478 0.00 0.00 0.00 3.72
2283 6324 4.021894 GCTCATAGGGGTAGAGTGTATGTG 60.022 50.000 0.00 0.00 0.00 3.21
2284 6325 4.153411 GCTCATAGGGGTAGAGTGTATGT 58.847 47.826 0.00 0.00 0.00 2.29
2285 6326 4.021894 GTGCTCATAGGGGTAGAGTGTATG 60.022 50.000 0.00 0.00 0.00 2.39
2286 6327 4.153411 GTGCTCATAGGGGTAGAGTGTAT 58.847 47.826 0.00 0.00 0.00 2.29
2287 6328 3.563223 GTGCTCATAGGGGTAGAGTGTA 58.437 50.000 0.00 0.00 0.00 2.90
2288 6329 2.389715 GTGCTCATAGGGGTAGAGTGT 58.610 52.381 0.00 0.00 0.00 3.55
2289 6330 1.689273 GGTGCTCATAGGGGTAGAGTG 59.311 57.143 0.00 0.00 0.00 3.51
2290 6331 1.576272 AGGTGCTCATAGGGGTAGAGT 59.424 52.381 0.00 0.00 0.00 3.24
2291 6332 2.243810 GAGGTGCTCATAGGGGTAGAG 58.756 57.143 0.00 0.00 0.00 2.43
2292 6333 1.133136 GGAGGTGCTCATAGGGGTAGA 60.133 57.143 0.00 0.00 31.08 2.59
2293 6334 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
2294 6335 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
2295 6336 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
2296 6337 1.457643 TCGGAGGTGCTCATAGGGG 60.458 63.158 0.00 0.00 31.08 4.79
2297 6338 0.468214 TCTCGGAGGTGCTCATAGGG 60.468 60.000 4.96 0.00 31.08 3.53
2298 6339 0.958091 CTCTCGGAGGTGCTCATAGG 59.042 60.000 4.96 0.00 31.08 2.57
2299 6340 1.606668 GTCTCTCGGAGGTGCTCATAG 59.393 57.143 4.96 0.00 31.08 2.23
2300 6341 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
2301 6342 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
2302 6343 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
2303 6344 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
2304 6345 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
2305 6346 1.806568 CTCAGTCTCTCGGAGGTGC 59.193 63.158 4.96 0.00 35.32 5.01
2306 6347 0.679640 AGCTCAGTCTCTCGGAGGTG 60.680 60.000 4.96 0.00 44.55 4.00
2307 6348 0.679640 CAGCTCAGTCTCTCGGAGGT 60.680 60.000 4.96 0.00 46.44 3.85
2308 6349 1.383456 CCAGCTCAGTCTCTCGGAGG 61.383 65.000 4.96 0.00 38.48 4.30
2309 6350 2.003658 GCCAGCTCAGTCTCTCGGAG 62.004 65.000 0.00 0.00 40.44 4.63
2310 6351 2.049185 GCCAGCTCAGTCTCTCGGA 61.049 63.158 0.00 0.00 0.00 4.55
2311 6352 1.674764 ATGCCAGCTCAGTCTCTCGG 61.675 60.000 0.00 0.00 0.00 4.63
2312 6353 1.028130 TATGCCAGCTCAGTCTCTCG 58.972 55.000 0.00 0.00 0.00 4.04
2313 6354 2.627221 TGATATGCCAGCTCAGTCTCTC 59.373 50.000 0.00 0.00 0.00 3.20
2314 6355 2.675583 TGATATGCCAGCTCAGTCTCT 58.324 47.619 0.00 0.00 0.00 3.10
2315 6356 3.258872 AGATGATATGCCAGCTCAGTCTC 59.741 47.826 0.00 0.00 0.00 3.36
2316 6357 3.241156 AGATGATATGCCAGCTCAGTCT 58.759 45.455 0.00 0.00 0.00 3.24
2317 6358 3.681593 AGATGATATGCCAGCTCAGTC 57.318 47.619 0.00 0.00 0.00 3.51
2318 6359 3.390311 TCAAGATGATATGCCAGCTCAGT 59.610 43.478 0.00 0.00 30.67 3.41
2319 6360 3.997681 CTCAAGATGATATGCCAGCTCAG 59.002 47.826 0.00 0.00 30.67 3.35
2320 6361 3.644738 TCTCAAGATGATATGCCAGCTCA 59.355 43.478 0.00 0.00 30.67 4.26
2321 6362 4.268797 TCTCAAGATGATATGCCAGCTC 57.731 45.455 0.00 0.00 30.67 4.09
2322 6363 4.912317 ATCTCAAGATGATATGCCAGCT 57.088 40.909 0.00 0.00 33.74 4.24
2323 6364 5.961396 AAATCTCAAGATGATATGCCAGC 57.039 39.130 0.00 0.00 34.49 4.85
2324 6365 6.870439 TCGTAAATCTCAAGATGATATGCCAG 59.130 38.462 0.00 0.00 34.49 4.85
2325 6366 6.758254 TCGTAAATCTCAAGATGATATGCCA 58.242 36.000 0.00 0.00 34.49 4.92
2326 6367 7.623089 GCTTCGTAAATCTCAAGATGATATGCC 60.623 40.741 0.00 0.00 34.49 4.40
2327 6368 7.232994 GCTTCGTAAATCTCAAGATGATATGC 58.767 38.462 0.00 0.00 34.49 3.14
2328 6369 7.386025 TGGCTTCGTAAATCTCAAGATGATATG 59.614 37.037 0.00 0.00 34.49 1.78
2329 6370 7.386299 GTGGCTTCGTAAATCTCAAGATGATAT 59.614 37.037 0.00 0.00 34.49 1.63
2330 6371 6.701841 GTGGCTTCGTAAATCTCAAGATGATA 59.298 38.462 0.00 0.00 34.49 2.15
2331 6372 5.525378 GTGGCTTCGTAAATCTCAAGATGAT 59.475 40.000 0.00 0.00 34.49 2.45
2332 6373 4.870426 GTGGCTTCGTAAATCTCAAGATGA 59.130 41.667 0.00 0.00 34.49 2.92
2333 6374 4.034510 GGTGGCTTCGTAAATCTCAAGATG 59.965 45.833 0.00 0.00 34.49 2.90
2334 6375 4.192317 GGTGGCTTCGTAAATCTCAAGAT 58.808 43.478 0.00 0.00 36.07 2.40
2335 6376 3.007506 TGGTGGCTTCGTAAATCTCAAGA 59.992 43.478 0.00 0.00 0.00 3.02
2336 6377 3.334691 TGGTGGCTTCGTAAATCTCAAG 58.665 45.455 0.00 0.00 0.00 3.02
2337 6378 3.410631 TGGTGGCTTCGTAAATCTCAA 57.589 42.857 0.00 0.00 0.00 3.02
2338 6379 3.627395 ATGGTGGCTTCGTAAATCTCA 57.373 42.857 0.00 0.00 0.00 3.27
2339 6380 4.058817 CCTATGGTGGCTTCGTAAATCTC 58.941 47.826 0.00 0.00 0.00 2.75
2340 6381 4.073293 CCTATGGTGGCTTCGTAAATCT 57.927 45.455 0.00 0.00 0.00 2.40
2352 6393 3.792053 GACGAGGCGCCTATGGTGG 62.792 68.421 32.97 16.50 33.18 4.61
2353 6394 2.279517 GACGAGGCGCCTATGGTG 60.280 66.667 32.97 18.94 36.10 4.17
2354 6395 3.900892 CGACGAGGCGCCTATGGT 61.901 66.667 32.97 26.91 0.00 3.55
2355 6396 3.825833 GACGACGAGGCGCCTATGG 62.826 68.421 32.97 23.64 33.86 2.74
2356 6397 2.353607 GACGACGAGGCGCCTATG 60.354 66.667 32.97 27.02 33.86 2.23
2378 6419 1.797025 CTTTCAGTGGGAGACGTTCC 58.203 55.000 7.90 7.90 46.00 3.62
2379 6420 1.149148 GCTTTCAGTGGGAGACGTTC 58.851 55.000 0.00 0.00 0.00 3.95
2380 6421 0.600255 CGCTTTCAGTGGGAGACGTT 60.600 55.000 0.00 0.00 0.00 3.99
2381 6422 1.006102 CGCTTTCAGTGGGAGACGT 60.006 57.895 0.00 0.00 0.00 4.34
2382 6423 2.383527 GCGCTTTCAGTGGGAGACG 61.384 63.158 0.00 0.00 0.00 4.18
2383 6424 0.674895 ATGCGCTTTCAGTGGGAGAC 60.675 55.000 9.73 0.00 0.00 3.36
2384 6425 0.391661 GATGCGCTTTCAGTGGGAGA 60.392 55.000 9.73 0.00 0.00 3.71
2385 6426 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
2386 6427 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
2387 6428 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
2398 6439 0.878523 TAAGGATTTCCGGCGATGCG 60.879 55.000 9.30 0.00 42.08 4.73
2399 6440 1.305201 TTAAGGATTTCCGGCGATGC 58.695 50.000 9.30 0.00 42.08 3.91
2400 6441 5.682943 TTATTTAAGGATTTCCGGCGATG 57.317 39.130 9.30 0.00 42.08 3.84
2401 6442 6.072119 GGATTTATTTAAGGATTTCCGGCGAT 60.072 38.462 9.30 0.00 42.08 4.58
2402 6443 5.239963 GGATTTATTTAAGGATTTCCGGCGA 59.760 40.000 9.30 0.00 42.08 5.54
2403 6444 5.009210 TGGATTTATTTAAGGATTTCCGGCG 59.991 40.000 0.00 0.00 42.08 6.46
2404 6445 6.399639 TGGATTTATTTAAGGATTTCCGGC 57.600 37.500 0.00 0.00 42.08 6.13
2405 6446 6.775629 TCCTGGATTTATTTAAGGATTTCCGG 59.224 38.462 0.00 0.00 42.08 5.14
2406 6447 7.817418 TCCTGGATTTATTTAAGGATTTCCG 57.183 36.000 0.00 0.00 42.08 4.30
2412 6453 8.792633 CGCATTATTCCTGGATTTATTTAAGGA 58.207 33.333 0.00 0.00 35.24 3.36
2413 6454 8.792633 TCGCATTATTCCTGGATTTATTTAAGG 58.207 33.333 0.00 0.00 0.00 2.69
2414 6455 9.831737 CTCGCATTATTCCTGGATTTATTTAAG 57.168 33.333 0.00 0.00 0.00 1.85
2415 6456 8.296713 GCTCGCATTATTCCTGGATTTATTTAA 58.703 33.333 0.00 0.00 0.00 1.52
2416 6457 7.446931 TGCTCGCATTATTCCTGGATTTATTTA 59.553 33.333 0.00 0.00 0.00 1.40
2417 6458 6.265196 TGCTCGCATTATTCCTGGATTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
2418 6459 5.769662 TGCTCGCATTATTCCTGGATTTATT 59.230 36.000 0.00 0.00 0.00 1.40
2419 6460 5.182001 GTGCTCGCATTATTCCTGGATTTAT 59.818 40.000 0.00 0.00 0.00 1.40
2420 6461 4.515191 GTGCTCGCATTATTCCTGGATTTA 59.485 41.667 0.00 0.00 0.00 1.40
2421 6462 3.316308 GTGCTCGCATTATTCCTGGATTT 59.684 43.478 0.00 0.00 0.00 2.17
2422 6463 2.880890 GTGCTCGCATTATTCCTGGATT 59.119 45.455 0.00 0.00 0.00 3.01
2423 6464 2.498167 GTGCTCGCATTATTCCTGGAT 58.502 47.619 0.00 0.00 0.00 3.41
2424 6465 1.475034 GGTGCTCGCATTATTCCTGGA 60.475 52.381 0.00 0.00 0.00 3.86
2425 6466 0.947244 GGTGCTCGCATTATTCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
2426 6467 1.600957 CTGGTGCTCGCATTATTCCTG 59.399 52.381 0.00 0.00 0.00 3.86
2427 6468 1.475751 CCTGGTGCTCGCATTATTCCT 60.476 52.381 0.00 0.00 0.00 3.36
2428 6469 0.947244 CCTGGTGCTCGCATTATTCC 59.053 55.000 0.00 0.00 0.00 3.01
2429 6470 1.953559 TCCTGGTGCTCGCATTATTC 58.046 50.000 0.00 0.00 0.00 1.75
2430 6471 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
2431 6472 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
2432 6473 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
2433 6474 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
2434 6475 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
2435 6476 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
2436 6477 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
2437 6478 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
2438 6479 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
2439 6480 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
2440 6481 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
2456 6497 2.126882 TGGTATCCTCAACCCATCAGG 58.873 52.381 0.00 0.00 43.78 3.86
2457 6498 2.774234 AGTGGTATCCTCAACCCATCAG 59.226 50.000 0.00 0.00 36.06 2.90
2458 6499 2.505407 CAGTGGTATCCTCAACCCATCA 59.495 50.000 0.00 0.00 36.06 3.07
2459 6500 2.505819 ACAGTGGTATCCTCAACCCATC 59.494 50.000 0.00 0.00 36.06 3.51
2460 6501 2.505819 GACAGTGGTATCCTCAACCCAT 59.494 50.000 0.00 0.00 36.06 4.00
2461 6502 1.906574 GACAGTGGTATCCTCAACCCA 59.093 52.381 0.00 0.00 36.06 4.51
2462 6503 1.209747 GGACAGTGGTATCCTCAACCC 59.790 57.143 0.00 0.00 36.06 4.11
2463 6504 1.906574 TGGACAGTGGTATCCTCAACC 59.093 52.381 0.00 0.00 35.86 3.77
2464 6505 2.354805 GGTGGACAGTGGTATCCTCAAC 60.355 54.545 0.00 0.00 35.86 3.18
2465 6506 1.906574 GGTGGACAGTGGTATCCTCAA 59.093 52.381 0.00 0.00 35.86 3.02
2466 6507 1.078823 AGGTGGACAGTGGTATCCTCA 59.921 52.381 0.00 0.00 35.86 3.86
2467 6508 1.867363 AGGTGGACAGTGGTATCCTC 58.133 55.000 0.00 0.00 35.86 3.71
2468 6509 3.105283 GTTAGGTGGACAGTGGTATCCT 58.895 50.000 0.00 0.00 35.86 3.24
2469 6510 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
2470 6511 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
2471 6512 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
2472 6513 2.402182 TGGTTAGGTGGACAGTGGTA 57.598 50.000 0.00 0.00 0.00 3.25
2473 6514 1.628846 GATGGTTAGGTGGACAGTGGT 59.371 52.381 0.00 0.00 0.00 4.16
2474 6515 1.909302 AGATGGTTAGGTGGACAGTGG 59.091 52.381 0.00 0.00 0.00 4.00
2475 6516 2.567169 TGAGATGGTTAGGTGGACAGTG 59.433 50.000 0.00 0.00 0.00 3.66
2476 6517 2.902608 TGAGATGGTTAGGTGGACAGT 58.097 47.619 0.00 0.00 0.00 3.55
2477 6518 3.600388 GTTGAGATGGTTAGGTGGACAG 58.400 50.000 0.00 0.00 0.00 3.51
2478 6519 2.304761 GGTTGAGATGGTTAGGTGGACA 59.695 50.000 0.00 0.00 0.00 4.02
2479 6520 2.304761 TGGTTGAGATGGTTAGGTGGAC 59.695 50.000 0.00 0.00 0.00 4.02
2480 6521 2.304761 GTGGTTGAGATGGTTAGGTGGA 59.695 50.000 0.00 0.00 0.00 4.02
2481 6522 2.039746 TGTGGTTGAGATGGTTAGGTGG 59.960 50.000 0.00 0.00 0.00 4.61
2482 6523 3.338249 CTGTGGTTGAGATGGTTAGGTG 58.662 50.000 0.00 0.00 0.00 4.00
2483 6524 2.305927 CCTGTGGTTGAGATGGTTAGGT 59.694 50.000 0.00 0.00 0.00 3.08
2484 6525 2.305927 ACCTGTGGTTGAGATGGTTAGG 59.694 50.000 0.00 0.00 27.29 2.69
2485 6526 3.703001 ACCTGTGGTTGAGATGGTTAG 57.297 47.619 0.00 0.00 27.29 2.34
2497 6538 0.250124 TTCGCGAATCAACCTGTGGT 60.250 50.000 19.38 0.00 37.65 4.16
2498 6539 0.443869 CTTCGCGAATCAACCTGTGG 59.556 55.000 23.67 2.23 0.00 4.17
2499 6540 0.179215 GCTTCGCGAATCAACCTGTG 60.179 55.000 23.67 8.30 0.00 3.66
2500 6541 0.602638 TGCTTCGCGAATCAACCTGT 60.603 50.000 23.67 0.00 0.00 4.00
2501 6542 0.516877 TTGCTTCGCGAATCAACCTG 59.483 50.000 28.49 14.54 0.00 4.00
2502 6543 0.798776 CTTGCTTCGCGAATCAACCT 59.201 50.000 28.49 0.00 0.00 3.50
2503 6544 0.517316 ACTTGCTTCGCGAATCAACC 59.483 50.000 28.49 13.38 0.00 3.77
2504 6545 1.971962 CAACTTGCTTCGCGAATCAAC 59.028 47.619 28.49 16.56 0.00 3.18
2505 6546 1.870402 TCAACTTGCTTCGCGAATCAA 59.130 42.857 29.60 29.60 0.00 2.57
2506 6547 1.507562 TCAACTTGCTTCGCGAATCA 58.492 45.000 23.67 21.94 0.00 2.57
2507 6548 2.159653 ACATCAACTTGCTTCGCGAATC 60.160 45.455 23.67 19.26 0.00 2.52
2508 6549 1.806542 ACATCAACTTGCTTCGCGAAT 59.193 42.857 23.67 3.64 0.00 3.34
2509 6550 1.225855 ACATCAACTTGCTTCGCGAA 58.774 45.000 22.01 22.01 0.00 4.70
2510 6551 1.069973 CAACATCAACTTGCTTCGCGA 60.070 47.619 3.71 3.71 0.00 5.87
2511 6552 1.069973 TCAACATCAACTTGCTTCGCG 60.070 47.619 0.00 0.00 0.00 5.87
2512 6553 2.686558 TCAACATCAACTTGCTTCGC 57.313 45.000 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.