Multiple sequence alignment - TraesCS6D01G039900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G039900 chr6D 100.000 2546 0 0 1 2546 16308241 16305696 0.000000e+00 4702.0
1 TraesCS6D01G039900 chr6D 88.527 828 69 13 752 1556 29089445 29090269 0.000000e+00 979.0
2 TraesCS6D01G039900 chr6D 89.004 773 56 10 815 1577 16510587 16511340 0.000000e+00 929.0
3 TraesCS6D01G039900 chr6D 87.001 777 59 27 811 1563 16523379 16522621 0.000000e+00 837.0
4 TraesCS6D01G039900 chr6D 94.188 499 27 2 240 738 27834779 27834283 0.000000e+00 760.0
5 TraesCS6D01G039900 chr6D 79.394 330 43 15 1591 1902 24002231 24002553 2.570000e-50 209.0
6 TraesCS6D01G039900 chr6B 91.176 1156 67 17 737 1871 28256887 28255746 0.000000e+00 1537.0
7 TraesCS6D01G039900 chr6B 89.062 832 66 16 750 1577 28517566 28516756 0.000000e+00 1009.0
8 TraesCS6D01G039900 chr6B 91.770 243 20 0 1 243 28257466 28257224 3.140000e-89 339.0
9 TraesCS6D01G039900 chr6B 91.139 237 20 1 1 237 28925283 28925518 1.140000e-83 320.0
10 TraesCS6D01G039900 chr6B 94.969 159 6 2 2333 2489 28255372 28255214 5.440000e-62 248.0
11 TraesCS6D01G039900 chr6B 90.761 184 14 3 2308 2489 28214004 28213822 2.530000e-60 243.0
12 TraesCS6D01G039900 chr6B 93.506 154 8 1 1945 2096 28255714 28255561 7.090000e-56 228.0
13 TraesCS6D01G039900 chr6B 75.455 330 56 18 1590 1902 38878400 38878721 1.230000e-28 137.0
14 TraesCS6D01G039900 chr6B 88.660 97 8 3 2390 2484 28254637 28254542 5.760000e-22 115.0
15 TraesCS6D01G039900 chr6B 85.859 99 3 2 2204 2302 28255455 28255368 7.500000e-16 95.3
16 TraesCS6D01G039900 chr6A 88.079 1166 77 32 750 1888 16594037 16592907 0.000000e+00 1327.0
17 TraesCS6D01G039900 chr6A 88.902 838 76 9 750 1577 16658939 16658109 0.000000e+00 1016.0
18 TraesCS6D01G039900 chr6A 90.667 375 23 8 2124 2489 16592651 16592280 2.940000e-134 488.0
19 TraesCS6D01G039900 chr6A 86.598 194 17 7 2042 2231 208043536 208043348 3.320000e-49 206.0
20 TraesCS6D01G039900 chr6A 93.750 96 5 1 2390 2484 16591704 16591609 2.640000e-30 143.0
21 TraesCS6D01G039900 chr6A 94.118 68 4 0 2333 2400 16592127 16592060 1.250000e-18 104.0
22 TraesCS6D01G039900 chr6A 94.828 58 3 0 2489 2546 16592132 16592075 9.700000e-15 91.6
23 TraesCS6D01G039900 chr5B 89.267 764 60 15 810 1562 647387512 647386760 0.000000e+00 937.0
24 TraesCS6D01G039900 chr5D 89.108 762 54 18 810 1562 514924276 514923535 0.000000e+00 920.0
25 TraesCS6D01G039900 chr5D 86.364 198 18 7 2027 2222 446902663 446902853 9.230000e-50 207.0
26 TraesCS6D01G039900 chr5A 87.974 765 63 18 810 1565 642919563 642918819 0.000000e+00 876.0
27 TraesCS6D01G039900 chr5A 93.600 500 30 2 240 739 695770236 695770733 0.000000e+00 745.0
28 TraesCS6D01G039900 chr5A 92.510 494 35 2 240 733 582852853 582853344 0.000000e+00 706.0
29 TraesCS6D01G039900 chr1B 87.193 773 62 23 811 1563 587472695 587473450 0.000000e+00 845.0
30 TraesCS6D01G039900 chr1B 92.547 483 29 2 240 715 28827097 28826615 0.000000e+00 686.0
31 TraesCS6D01G039900 chr2A 93.976 498 30 0 240 737 16144109 16143612 0.000000e+00 754.0
32 TraesCS6D01G039900 chr2A 92.157 459 36 0 272 730 713671554 713672012 0.000000e+00 649.0
33 TraesCS6D01G039900 chr2A 83.920 199 21 9 2027 2222 193695086 193694896 2.010000e-41 180.0
34 TraesCS6D01G039900 chr2D 93.661 489 31 0 240 728 110811705 110811217 0.000000e+00 732.0
35 TraesCS6D01G039900 chr1A 93.509 493 30 2 240 732 58404336 58404826 0.000000e+00 732.0
36 TraesCS6D01G039900 chr1A 85.859 198 19 7 2027 2222 435407711 435407901 4.300000e-48 202.0
37 TraesCS6D01G039900 chr3A 92.662 477 35 0 240 716 57800963 57801439 0.000000e+00 688.0
38 TraesCS6D01G039900 chr3D 86.364 198 18 7 2027 2222 497762944 497762754 9.230000e-50 207.0
39 TraesCS6D01G039900 chr3B 76.316 152 30 6 1800 1946 296066200 296066050 2.720000e-10 76.8
40 TraesCS6D01G039900 chr3B 83.133 83 12 2 43 123 102590160 102590242 9.770000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G039900 chr6D 16305696 16308241 2545 True 4702.00 4702 100.0000 1 2546 1 chr6D.!!$R1 2545
1 TraesCS6D01G039900 chr6D 29089445 29090269 824 False 979.00 979 88.5270 752 1556 1 chr6D.!!$F3 804
2 TraesCS6D01G039900 chr6D 16510587 16511340 753 False 929.00 929 89.0040 815 1577 1 chr6D.!!$F1 762
3 TraesCS6D01G039900 chr6D 16522621 16523379 758 True 837.00 837 87.0010 811 1563 1 chr6D.!!$R2 752
4 TraesCS6D01G039900 chr6B 28516756 28517566 810 True 1009.00 1009 89.0620 750 1577 1 chr6B.!!$R2 827
5 TraesCS6D01G039900 chr6B 28254542 28257466 2924 True 427.05 1537 90.9900 1 2489 6 chr6B.!!$R3 2488
6 TraesCS6D01G039900 chr6A 16658109 16658939 830 True 1016.00 1016 88.9020 750 1577 1 chr6A.!!$R1 827
7 TraesCS6D01G039900 chr6A 16591609 16594037 2428 True 430.72 1327 92.2884 750 2546 5 chr6A.!!$R3 1796
8 TraesCS6D01G039900 chr5B 647386760 647387512 752 True 937.00 937 89.2670 810 1562 1 chr5B.!!$R1 752
9 TraesCS6D01G039900 chr5D 514923535 514924276 741 True 920.00 920 89.1080 810 1562 1 chr5D.!!$R1 752
10 TraesCS6D01G039900 chr5A 642918819 642919563 744 True 876.00 876 87.9740 810 1565 1 chr5A.!!$R1 755
11 TraesCS6D01G039900 chr1B 587472695 587473450 755 False 845.00 845 87.1930 811 1563 1 chr1B.!!$F1 752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.036294 GGTGTGGTGGCTAGGAACTC 60.036 60.0 0.0 0.0 41.75 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1601 1694 0.259938 ATCTGATGAAAGGGGCCACC 59.74 55.0 0.0 0.57 40.67 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.202101 TGTCTAAAATGCAAAGTGTGTGGG 60.202 41.667 0.00 0.00 0.00 4.61
40 41 1.774110 ATGCAAAGTGTGTGGGTGAA 58.226 45.000 0.00 0.00 0.00 3.18
41 42 1.550327 TGCAAAGTGTGTGGGTGAAA 58.450 45.000 0.00 0.00 0.00 2.69
77 78 3.918294 TGATCAGATGAGCCATCAACA 57.082 42.857 14.93 8.00 42.72 3.33
126 127 3.131933 CAGAGGTGGTGAGTGGAAGATAG 59.868 52.174 0.00 0.00 0.00 2.08
179 180 1.205893 AGTCGAATCCTCTGACTTGCC 59.794 52.381 0.00 0.00 39.87 4.52
200 201 0.758123 GAGGCAAGCCAGAGAGCTAT 59.242 55.000 14.40 0.00 44.11 2.97
201 202 1.140652 GAGGCAAGCCAGAGAGCTATT 59.859 52.381 14.40 0.00 44.11 1.73
206 207 0.907486 AGCCAGAGAGCTATTGTGCA 59.093 50.000 0.00 0.00 42.70 4.57
220 221 8.147642 AGCTATTGTGCATCTTTACATAGAAC 57.852 34.615 0.00 0.00 34.99 3.01
229 230 6.419413 GCATCTTTACATAGAACGGAGAAGAG 59.581 42.308 0.00 0.00 0.00 2.85
238 239 0.406361 ACGGAGAAGAGGAGTCAGGT 59.594 55.000 0.00 0.00 0.00 4.00
243 244 4.202377 CGGAGAAGAGGAGTCAGGTAGATA 60.202 50.000 0.00 0.00 0.00 1.98
244 245 5.687970 CGGAGAAGAGGAGTCAGGTAGATAA 60.688 48.000 0.00 0.00 0.00 1.75
245 246 6.130569 GGAGAAGAGGAGTCAGGTAGATAAA 58.869 44.000 0.00 0.00 0.00 1.40
246 247 6.780522 GGAGAAGAGGAGTCAGGTAGATAAAT 59.219 42.308 0.00 0.00 0.00 1.40
247 248 7.255801 GGAGAAGAGGAGTCAGGTAGATAAATG 60.256 44.444 0.00 0.00 0.00 2.32
248 249 7.129425 AGAAGAGGAGTCAGGTAGATAAATGT 58.871 38.462 0.00 0.00 0.00 2.71
249 250 6.969993 AGAGGAGTCAGGTAGATAAATGTC 57.030 41.667 0.00 0.00 0.00 3.06
250 251 5.533154 AGAGGAGTCAGGTAGATAAATGTCG 59.467 44.000 0.00 0.00 0.00 4.35
251 252 5.446860 AGGAGTCAGGTAGATAAATGTCGA 58.553 41.667 0.00 0.00 0.00 4.20
253 254 5.171147 AGTCAGGTAGATAAATGTCGACG 57.829 43.478 11.62 0.00 0.00 5.12
254 255 3.729716 GTCAGGTAGATAAATGTCGACGC 59.270 47.826 11.62 0.00 0.00 5.19
255 256 3.379057 TCAGGTAGATAAATGTCGACGCA 59.621 43.478 11.62 0.00 0.00 5.24
258 259 3.060473 GGTAGATAAATGTCGACGCAAGC 60.060 47.826 11.62 0.00 45.62 4.01
260 261 3.262420 AGATAAATGTCGACGCAAGCTT 58.738 40.909 11.62 0.00 45.62 3.74
261 262 3.684788 AGATAAATGTCGACGCAAGCTTT 59.315 39.130 11.62 6.24 45.62 3.51
262 263 2.036556 AAATGTCGACGCAAGCTTTG 57.963 45.000 11.62 0.00 45.62 2.77
265 266 1.082756 GTCGACGCAAGCTTTGTGG 60.083 57.895 0.00 5.24 45.14 4.17
268 269 1.221466 CGACGCAAGCTTTGTGGAGA 61.221 55.000 5.85 0.00 45.14 3.71
269 270 0.514691 GACGCAAGCTTTGTGGAGAG 59.485 55.000 5.85 0.00 45.14 3.20
270 271 1.208614 CGCAAGCTTTGTGGAGAGC 59.791 57.895 0.00 0.00 37.51 4.09
271 272 1.509644 CGCAAGCTTTGTGGAGAGCA 61.510 55.000 0.00 0.00 41.31 4.26
272 273 0.886563 GCAAGCTTTGTGGAGAGCAT 59.113 50.000 0.00 0.00 41.31 3.79
273 274 1.271656 GCAAGCTTTGTGGAGAGCATT 59.728 47.619 0.00 0.00 41.31 3.56
274 275 2.489329 GCAAGCTTTGTGGAGAGCATTA 59.511 45.455 0.00 0.00 41.31 1.90
275 276 3.427233 GCAAGCTTTGTGGAGAGCATTAG 60.427 47.826 0.00 0.00 41.31 1.73
276 277 2.363683 AGCTTTGTGGAGAGCATTAGC 58.636 47.619 0.00 0.00 41.31 3.09
293 294 2.901840 CGCTGCAAGTGTGGGTGT 60.902 61.111 0.00 0.00 40.27 4.16
294 295 2.723746 GCTGCAAGTGTGGGTGTG 59.276 61.111 0.00 0.00 35.30 3.82
295 296 2.848858 GCTGCAAGTGTGGGTGTGG 61.849 63.158 0.00 0.00 35.30 4.17
296 297 1.453745 CTGCAAGTGTGGGTGTGGT 60.454 57.895 0.00 0.00 0.00 4.16
297 298 1.727511 CTGCAAGTGTGGGTGTGGTG 61.728 60.000 0.00 0.00 0.00 4.17
298 299 2.489275 GCAAGTGTGGGTGTGGTGG 61.489 63.158 0.00 0.00 0.00 4.61
299 300 2.123897 AAGTGTGGGTGTGGTGGC 60.124 61.111 0.00 0.00 0.00 5.01
300 301 2.689691 AAGTGTGGGTGTGGTGGCT 61.690 57.895 0.00 0.00 0.00 4.75
301 302 1.349542 AAGTGTGGGTGTGGTGGCTA 61.350 55.000 0.00 0.00 0.00 3.93
302 303 1.302511 GTGTGGGTGTGGTGGCTAG 60.303 63.158 0.00 0.00 0.00 3.42
303 304 2.351276 GTGGGTGTGGTGGCTAGG 59.649 66.667 0.00 0.00 0.00 3.02
304 305 2.205749 TGGGTGTGGTGGCTAGGA 59.794 61.111 0.00 0.00 0.00 2.94
305 306 1.462432 TGGGTGTGGTGGCTAGGAA 60.462 57.895 0.00 0.00 0.00 3.36
306 307 1.002502 GGGTGTGGTGGCTAGGAAC 60.003 63.158 0.00 0.00 0.00 3.62
307 308 1.489560 GGGTGTGGTGGCTAGGAACT 61.490 60.000 0.00 0.00 46.37 3.01
308 309 0.036294 GGTGTGGTGGCTAGGAACTC 60.036 60.000 0.00 0.00 41.75 3.01
309 310 0.036294 GTGTGGTGGCTAGGAACTCC 60.036 60.000 0.00 0.00 41.75 3.85
311 312 0.984995 GTGGTGGCTAGGAACTCCTT 59.015 55.000 3.00 0.00 46.09 3.36
312 313 1.351350 GTGGTGGCTAGGAACTCCTTT 59.649 52.381 3.00 0.00 46.09 3.11
313 314 1.351017 TGGTGGCTAGGAACTCCTTTG 59.649 52.381 3.00 0.00 46.09 2.77
314 315 1.340114 GGTGGCTAGGAACTCCTTTGG 60.340 57.143 3.00 0.00 46.09 3.28
315 316 1.628846 GTGGCTAGGAACTCCTTTGGA 59.371 52.381 3.00 0.00 46.09 3.53
316 317 2.039879 GTGGCTAGGAACTCCTTTGGAA 59.960 50.000 3.00 0.00 46.09 3.53
317 318 2.714250 TGGCTAGGAACTCCTTTGGAAA 59.286 45.455 3.00 0.00 46.09 3.13
318 319 3.333680 TGGCTAGGAACTCCTTTGGAAAT 59.666 43.478 3.00 0.00 46.09 2.17
319 320 3.696548 GGCTAGGAACTCCTTTGGAAATG 59.303 47.826 3.00 0.00 46.09 2.32
320 321 3.129462 GCTAGGAACTCCTTTGGAAATGC 59.871 47.826 3.00 0.00 46.09 3.56
321 322 2.529632 AGGAACTCCTTTGGAAATGCC 58.470 47.619 0.00 0.00 46.09 4.40
322 323 2.158325 AGGAACTCCTTTGGAAATGCCA 60.158 45.455 0.00 0.00 46.09 4.92
323 324 3.502857 AGGAACTCCTTTGGAAATGCCAT 60.503 43.478 0.00 0.00 46.09 4.40
324 325 5.003085 AGGAACTCCTTTGGAAATGCCATT 61.003 41.667 0.00 0.00 46.09 3.16
325 326 7.029331 AGGAACTCCTTTGGAAATGCCATTG 62.029 44.000 0.00 0.00 46.09 2.82
334 335 4.541973 GGAAATGCCATTGTTTCCTCTT 57.458 40.909 9.09 0.00 46.26 2.85
335 336 4.248058 GGAAATGCCATTGTTTCCTCTTG 58.752 43.478 9.09 0.00 46.26 3.02
336 337 3.967332 AATGCCATTGTTTCCTCTTGG 57.033 42.857 0.00 0.00 0.00 3.61
337 338 1.631405 TGCCATTGTTTCCTCTTGGG 58.369 50.000 0.00 0.00 0.00 4.12
338 339 1.146774 TGCCATTGTTTCCTCTTGGGA 59.853 47.619 0.00 0.00 43.41 4.37
339 340 2.225343 TGCCATTGTTTCCTCTTGGGAT 60.225 45.455 0.00 0.00 44.66 3.85
340 341 2.833943 GCCATTGTTTCCTCTTGGGATT 59.166 45.455 0.00 0.00 44.66 3.01
341 342 3.261643 GCCATTGTTTCCTCTTGGGATTT 59.738 43.478 0.00 0.00 44.66 2.17
342 343 4.621510 GCCATTGTTTCCTCTTGGGATTTC 60.622 45.833 0.00 0.00 44.66 2.17
343 344 4.527816 CCATTGTTTCCTCTTGGGATTTCA 59.472 41.667 0.00 0.00 44.66 2.69
344 345 5.188359 CCATTGTTTCCTCTTGGGATTTCAT 59.812 40.000 0.00 0.00 44.66 2.57
345 346 5.982890 TTGTTTCCTCTTGGGATTTCATC 57.017 39.130 0.00 0.00 44.66 2.92
346 347 4.009675 TGTTTCCTCTTGGGATTTCATCG 58.990 43.478 0.00 0.00 44.66 3.84
347 348 3.281727 TTCCTCTTGGGATTTCATCGG 57.718 47.619 0.00 0.00 44.66 4.18
348 349 1.490490 TCCTCTTGGGATTTCATCGGG 59.510 52.381 0.00 0.00 39.58 5.14
349 350 1.312815 CTCTTGGGATTTCATCGGGC 58.687 55.000 0.00 0.00 0.00 6.13
350 351 0.463654 TCTTGGGATTTCATCGGGCG 60.464 55.000 0.00 0.00 0.00 6.13
351 352 0.748005 CTTGGGATTTCATCGGGCGT 60.748 55.000 0.00 0.00 0.00 5.68
352 353 0.322997 TTGGGATTTCATCGGGCGTT 60.323 50.000 0.00 0.00 0.00 4.84
353 354 1.029408 TGGGATTTCATCGGGCGTTG 61.029 55.000 0.00 0.00 0.00 4.10
354 355 1.029947 GGGATTTCATCGGGCGTTGT 61.030 55.000 0.00 0.00 0.00 3.32
355 356 1.658994 GGATTTCATCGGGCGTTGTA 58.341 50.000 0.00 0.00 0.00 2.41
356 357 2.011222 GGATTTCATCGGGCGTTGTAA 58.989 47.619 0.00 0.00 0.00 2.41
357 358 2.420722 GGATTTCATCGGGCGTTGTAAA 59.579 45.455 0.00 0.00 0.00 2.01
358 359 3.119779 GGATTTCATCGGGCGTTGTAAAA 60.120 43.478 0.00 0.00 0.00 1.52
359 360 3.546002 TTTCATCGGGCGTTGTAAAAG 57.454 42.857 0.00 0.00 0.00 2.27
368 369 1.504359 CGTTGTAAAAGCACGGAGGA 58.496 50.000 0.00 0.00 0.00 3.71
369 370 1.868498 CGTTGTAAAAGCACGGAGGAA 59.132 47.619 0.00 0.00 0.00 3.36
370 371 2.096417 CGTTGTAAAAGCACGGAGGAAG 60.096 50.000 0.00 0.00 0.00 3.46
371 372 1.519408 TGTAAAAGCACGGAGGAAGC 58.481 50.000 0.00 0.00 0.00 3.86
372 373 0.442699 GTAAAAGCACGGAGGAAGCG 59.557 55.000 0.00 0.00 0.00 4.68
373 374 0.672401 TAAAAGCACGGAGGAAGCGG 60.672 55.000 0.00 0.00 0.00 5.52
374 375 2.391724 AAAAGCACGGAGGAAGCGGA 62.392 55.000 0.00 0.00 0.00 5.54
375 376 2.391724 AAAGCACGGAGGAAGCGGAA 62.392 55.000 0.00 0.00 0.00 4.30
376 377 3.119096 GCACGGAGGAAGCGGAAC 61.119 66.667 0.00 0.00 0.00 3.62
377 378 2.657237 CACGGAGGAAGCGGAACT 59.343 61.111 0.00 0.00 0.00 3.01
378 379 1.446272 CACGGAGGAAGCGGAACTC 60.446 63.158 0.00 0.00 0.00 3.01
379 380 2.184579 CGGAGGAAGCGGAACTCC 59.815 66.667 8.99 8.99 45.73 3.85
389 390 2.044946 GGAACTCCGGGCTTGCAT 60.045 61.111 0.00 0.00 0.00 3.96
390 391 1.678970 GGAACTCCGGGCTTGCATT 60.679 57.895 0.00 0.00 0.00 3.56
391 392 1.508088 GAACTCCGGGCTTGCATTG 59.492 57.895 0.00 0.00 0.00 2.82
392 393 2.548127 GAACTCCGGGCTTGCATTGC 62.548 60.000 0.00 0.46 0.00 3.56
393 394 2.753043 CTCCGGGCTTGCATTGCT 60.753 61.111 10.49 0.00 0.00 3.91
394 395 3.060020 CTCCGGGCTTGCATTGCTG 62.060 63.158 10.49 4.17 0.00 4.41
395 396 4.137872 CCGGGCTTGCATTGCTGG 62.138 66.667 10.49 9.77 0.00 4.85
396 397 3.376078 CGGGCTTGCATTGCTGGT 61.376 61.111 10.49 0.00 0.00 4.00
397 398 2.575461 GGGCTTGCATTGCTGGTC 59.425 61.111 10.49 4.01 0.00 4.02
398 399 1.980772 GGGCTTGCATTGCTGGTCT 60.981 57.895 10.49 0.00 0.00 3.85
399 400 1.509923 GGCTTGCATTGCTGGTCTC 59.490 57.895 10.49 0.00 0.00 3.36
400 401 0.964358 GGCTTGCATTGCTGGTCTCT 60.964 55.000 10.49 0.00 0.00 3.10
401 402 1.679944 GGCTTGCATTGCTGGTCTCTA 60.680 52.381 10.49 0.00 0.00 2.43
402 403 2.295885 GCTTGCATTGCTGGTCTCTAT 58.704 47.619 10.49 0.00 0.00 1.98
403 404 3.470709 GCTTGCATTGCTGGTCTCTATA 58.529 45.455 10.49 0.00 0.00 1.31
404 405 4.070716 GCTTGCATTGCTGGTCTCTATAT 58.929 43.478 10.49 0.00 0.00 0.86
405 406 5.240891 GCTTGCATTGCTGGTCTCTATATA 58.759 41.667 10.49 0.00 0.00 0.86
406 407 5.350914 GCTTGCATTGCTGGTCTCTATATAG 59.649 44.000 10.49 3.10 0.00 1.31
407 408 5.411831 TGCATTGCTGGTCTCTATATAGG 57.588 43.478 10.49 1.42 0.00 2.57
408 409 4.840680 TGCATTGCTGGTCTCTATATAGGT 59.159 41.667 10.49 0.00 0.00 3.08
409 410 6.016555 TGCATTGCTGGTCTCTATATAGGTA 58.983 40.000 10.49 0.00 0.00 3.08
410 411 6.669591 TGCATTGCTGGTCTCTATATAGGTAT 59.330 38.462 10.49 0.00 0.00 2.73
411 412 7.147828 TGCATTGCTGGTCTCTATATAGGTATC 60.148 40.741 10.49 0.00 0.00 2.24
412 413 7.147828 GCATTGCTGGTCTCTATATAGGTATCA 60.148 40.741 9.89 4.37 0.00 2.15
413 414 7.704578 TTGCTGGTCTCTATATAGGTATCAC 57.295 40.000 9.89 0.64 0.00 3.06
414 415 6.790319 TGCTGGTCTCTATATAGGTATCACA 58.210 40.000 9.89 4.20 0.00 3.58
415 416 6.659668 TGCTGGTCTCTATATAGGTATCACAC 59.340 42.308 9.89 0.24 0.00 3.82
416 417 6.887545 GCTGGTCTCTATATAGGTATCACACT 59.112 42.308 9.89 0.00 0.00 3.55
417 418 7.066525 GCTGGTCTCTATATAGGTATCACACTC 59.933 44.444 9.89 0.00 0.00 3.51
418 419 7.403671 TGGTCTCTATATAGGTATCACACTCC 58.596 42.308 9.89 0.80 0.00 3.85
419 420 7.018249 TGGTCTCTATATAGGTATCACACTCCA 59.982 40.741 9.89 2.93 0.00 3.86
420 421 7.337436 GGTCTCTATATAGGTATCACACTCCAC 59.663 44.444 9.89 0.00 0.00 4.02
421 422 7.883833 GTCTCTATATAGGTATCACACTCCACA 59.116 40.741 9.89 0.00 0.00 4.17
424 425 9.244292 TCTATATAGGTATCACACTCCACAATC 57.756 37.037 9.89 0.00 0.00 2.67
426 427 6.814954 ATAGGTATCACACTCCACAATCTT 57.185 37.500 0.00 0.00 0.00 2.40
427 428 7.914427 ATAGGTATCACACTCCACAATCTTA 57.086 36.000 0.00 0.00 0.00 2.10
430 431 8.319057 AGGTATCACACTCCACAATCTTATAA 57.681 34.615 0.00 0.00 0.00 0.98
432 433 9.561069 GGTATCACACTCCACAATCTTATAATT 57.439 33.333 0.00 0.00 0.00 1.40
453 454 7.865706 AATTTTAGAGACTGACTGTGTGTTT 57.134 32.000 0.00 0.00 0.00 2.83
454 455 6.662414 TTTTAGAGACTGACTGTGTGTTTG 57.338 37.500 0.00 0.00 0.00 2.93
456 457 4.207891 AGAGACTGACTGTGTGTTTGTT 57.792 40.909 0.00 0.00 0.00 2.83
457 458 5.339008 AGAGACTGACTGTGTGTTTGTTA 57.661 39.130 0.00 0.00 0.00 2.41
458 459 5.352284 AGAGACTGACTGTGTGTTTGTTAG 58.648 41.667 0.00 0.00 0.00 2.34
459 460 5.086104 AGACTGACTGTGTGTTTGTTAGT 57.914 39.130 0.00 0.00 34.09 2.24
460 461 4.870426 AGACTGACTGTGTGTTTGTTAGTG 59.130 41.667 0.00 0.00 32.08 2.74
461 462 3.374058 ACTGACTGTGTGTTTGTTAGTGC 59.626 43.478 0.00 0.00 31.01 4.40
462 463 2.350192 TGACTGTGTGTTTGTTAGTGCG 59.650 45.455 0.00 0.00 0.00 5.34
463 464 2.350498 GACTGTGTGTTTGTTAGTGCGT 59.650 45.455 0.00 0.00 0.00 5.24
464 465 2.350498 ACTGTGTGTTTGTTAGTGCGTC 59.650 45.455 0.00 0.00 0.00 5.19
465 466 2.607635 CTGTGTGTTTGTTAGTGCGTCT 59.392 45.455 0.00 0.00 0.00 4.18
466 467 2.605818 TGTGTGTTTGTTAGTGCGTCTC 59.394 45.455 0.00 0.00 0.00 3.36
467 468 2.864343 GTGTGTTTGTTAGTGCGTCTCT 59.136 45.455 0.00 0.00 0.00 3.10
469 470 3.308595 TGTGTTTGTTAGTGCGTCTCTTG 59.691 43.478 0.00 0.00 0.00 3.02
470 471 2.286833 TGTTTGTTAGTGCGTCTCTTGC 59.713 45.455 0.00 0.00 0.00 4.01
471 472 2.232756 TTGTTAGTGCGTCTCTTGCA 57.767 45.000 0.00 0.00 40.70 4.08
472 473 2.232756 TGTTAGTGCGTCTCTTGCAA 57.767 45.000 0.00 0.00 45.23 4.08
473 474 2.556257 TGTTAGTGCGTCTCTTGCAAA 58.444 42.857 0.00 0.00 45.23 3.68
475 476 1.795768 TAGTGCGTCTCTTGCAAAGG 58.204 50.000 0.00 0.00 46.24 3.11
476 477 0.106708 AGTGCGTCTCTTGCAAAGGA 59.893 50.000 0.00 0.00 46.24 3.36
479 487 1.603802 TGCGTCTCTTGCAAAGGAAAG 59.396 47.619 0.00 1.40 46.24 2.62
483 491 4.672409 CGTCTCTTGCAAAGGAAAGTTTT 58.328 39.130 0.00 0.00 46.24 2.43
486 494 5.516696 GTCTCTTGCAAAGGAAAGTTTTGAC 59.483 40.000 0.00 0.00 46.24 3.18
490 498 3.513515 TGCAAAGGAAAGTTTTGACAGGT 59.486 39.130 2.18 0.00 37.65 4.00
496 504 0.663153 AAGTTTTGACAGGTCAGCGC 59.337 50.000 0.00 0.00 41.13 5.92
497 505 0.179045 AGTTTTGACAGGTCAGCGCT 60.179 50.000 2.64 2.64 41.13 5.92
498 506 1.070134 AGTTTTGACAGGTCAGCGCTA 59.930 47.619 10.99 0.00 41.13 4.26
499 507 2.076863 GTTTTGACAGGTCAGCGCTAT 58.923 47.619 10.99 0.00 41.13 2.97
500 508 2.472695 TTTGACAGGTCAGCGCTATT 57.527 45.000 10.99 0.00 41.13 1.73
501 509 2.472695 TTGACAGGTCAGCGCTATTT 57.527 45.000 10.99 0.00 41.13 1.40
503 511 3.603158 TGACAGGTCAGCGCTATTTAA 57.397 42.857 10.99 0.00 34.14 1.52
506 514 4.941263 TGACAGGTCAGCGCTATTTAATTT 59.059 37.500 10.99 0.00 34.14 1.82
508 516 4.941263 ACAGGTCAGCGCTATTTAATTTGA 59.059 37.500 10.99 0.00 0.00 2.69
509 517 5.414454 ACAGGTCAGCGCTATTTAATTTGAA 59.586 36.000 10.99 0.00 0.00 2.69
510 518 5.967674 CAGGTCAGCGCTATTTAATTTGAAG 59.032 40.000 10.99 0.00 0.00 3.02
511 519 5.880332 AGGTCAGCGCTATTTAATTTGAAGA 59.120 36.000 10.99 0.00 0.00 2.87
512 520 6.374333 AGGTCAGCGCTATTTAATTTGAAGAA 59.626 34.615 10.99 0.00 0.00 2.52
513 521 6.688813 GGTCAGCGCTATTTAATTTGAAGAAG 59.311 38.462 10.99 0.00 0.00 2.85
515 523 6.597672 TCAGCGCTATTTAATTTGAAGAAGGA 59.402 34.615 10.99 0.00 0.00 3.36
517 525 7.754924 CAGCGCTATTTAATTTGAAGAAGGAAA 59.245 33.333 10.99 0.00 0.00 3.13
518 526 7.755373 AGCGCTATTTAATTTGAAGAAGGAAAC 59.245 33.333 8.99 0.00 0.00 2.78
520 528 9.405587 CGCTATTTAATTTGAAGAAGGAAACAA 57.594 29.630 0.00 0.00 0.00 2.83
530 538 8.553459 TTGAAGAAGGAAACAATGAGTATCTC 57.447 34.615 0.00 0.00 34.92 2.75
532 540 6.627087 AGAAGGAAACAATGAGTATCTCCA 57.373 37.500 0.00 0.00 34.92 3.86
533 541 7.020827 AGAAGGAAACAATGAGTATCTCCAA 57.979 36.000 0.00 0.00 34.92 3.53
534 542 7.108847 AGAAGGAAACAATGAGTATCTCCAAG 58.891 38.462 0.00 0.00 34.92 3.61
535 543 6.627087 AGGAAACAATGAGTATCTCCAAGA 57.373 37.500 0.00 0.00 34.92 3.02
536 544 7.205515 AGGAAACAATGAGTATCTCCAAGAT 57.794 36.000 0.00 0.00 38.70 2.40
537 545 7.052873 AGGAAACAATGAGTATCTCCAAGATG 58.947 38.462 0.00 0.00 35.37 2.90
538 546 6.238593 GGAAACAATGAGTATCTCCAAGATGC 60.239 42.308 0.00 0.00 37.56 3.91
540 548 6.737720 ACAATGAGTATCTCCAAGATGCTA 57.262 37.500 7.42 0.00 45.64 3.49
542 550 6.098838 ACAATGAGTATCTCCAAGATGCTACA 59.901 38.462 7.42 8.02 45.64 2.74
543 551 6.931790 ATGAGTATCTCCAAGATGCTACAT 57.068 37.500 7.42 9.50 45.64 2.29
545 553 7.459795 TGAGTATCTCCAAGATGCTACATAG 57.540 40.000 7.42 0.00 45.64 2.23
546 554 6.435591 TGAGTATCTCCAAGATGCTACATAGG 59.564 42.308 7.42 0.00 45.64 2.57
547 555 6.318913 AGTATCTCCAAGATGCTACATAGGT 58.681 40.000 5.85 0.00 44.19 3.08
548 556 6.784969 AGTATCTCCAAGATGCTACATAGGTT 59.215 38.462 5.85 0.00 44.19 3.50
549 557 5.537300 TCTCCAAGATGCTACATAGGTTC 57.463 43.478 0.00 0.00 0.00 3.62
553 561 6.480763 TCCAAGATGCTACATAGGTTCAAAA 58.519 36.000 0.00 0.00 0.00 2.44
554 562 7.118723 TCCAAGATGCTACATAGGTTCAAAAT 58.881 34.615 0.00 0.00 0.00 1.82
556 564 8.253113 CCAAGATGCTACATAGGTTCAAAATTT 58.747 33.333 0.00 0.00 0.00 1.82
557 565 9.294030 CAAGATGCTACATAGGTTCAAAATTTC 57.706 33.333 0.00 0.00 0.00 2.17
559 567 9.023962 AGATGCTACATAGGTTCAAAATTTCAA 57.976 29.630 0.00 0.00 0.00 2.69
560 568 9.638239 GATGCTACATAGGTTCAAAATTTCAAA 57.362 29.630 0.00 0.00 0.00 2.69
561 569 9.643693 ATGCTACATAGGTTCAAAATTTCAAAG 57.356 29.630 0.00 0.00 0.00 2.77
562 570 8.855110 TGCTACATAGGTTCAAAATTTCAAAGA 58.145 29.630 0.00 0.00 0.00 2.52
563 571 9.860898 GCTACATAGGTTCAAAATTTCAAAGAT 57.139 29.630 0.00 0.00 0.00 2.40
577 585 9.947433 AAATTTCAAAGATTAATCATTCAGCCA 57.053 25.926 17.56 0.00 0.00 4.75
580 588 8.936070 TTCAAAGATTAATCATTCAGCCAATG 57.064 30.769 17.56 0.33 43.15 2.82
582 590 7.977293 TCAAAGATTAATCATTCAGCCAATGTG 59.023 33.333 17.56 0.00 42.47 3.21
583 591 6.401047 AGATTAATCATTCAGCCAATGTGG 57.599 37.500 17.56 0.00 42.47 4.17
584 592 5.895534 AGATTAATCATTCAGCCAATGTGGT 59.104 36.000 17.56 0.00 42.47 4.16
585 593 3.880047 AATCATTCAGCCAATGTGGTG 57.120 42.857 6.01 0.00 42.47 4.17
586 594 1.548081 TCATTCAGCCAATGTGGTGG 58.452 50.000 6.01 0.00 42.47 4.61
593 601 3.583054 CCAATGTGGTGGCTCATCT 57.417 52.632 0.00 0.00 31.35 2.90
596 604 3.559069 CCAATGTGGTGGCTCATCTTAT 58.441 45.455 0.00 0.00 31.35 1.73
597 605 3.956199 CCAATGTGGTGGCTCATCTTATT 59.044 43.478 0.00 0.00 31.35 1.40
598 606 4.202080 CCAATGTGGTGGCTCATCTTATTG 60.202 45.833 0.00 0.00 31.35 1.90
599 607 2.368439 TGTGGTGGCTCATCTTATTGC 58.632 47.619 0.00 0.00 0.00 3.56
600 608 2.025981 TGTGGTGGCTCATCTTATTGCT 60.026 45.455 0.00 0.00 0.00 3.91
603 611 4.274459 GTGGTGGCTCATCTTATTGCTAAG 59.726 45.833 0.00 0.00 36.46 2.18
604 612 4.080356 TGGTGGCTCATCTTATTGCTAAGT 60.080 41.667 0.00 0.00 36.51 2.24
605 613 5.130311 TGGTGGCTCATCTTATTGCTAAGTA 59.870 40.000 0.00 0.00 36.51 2.24
607 615 7.016170 TGGTGGCTCATCTTATTGCTAAGTATA 59.984 37.037 0.00 0.00 36.51 1.47
610 618 8.651389 TGGCTCATCTTATTGCTAAGTATAGTT 58.349 33.333 0.00 0.00 36.51 2.24
637 645 7.721286 GACAATAGGTCAGATGGTATTCTTG 57.279 40.000 0.00 0.00 46.19 3.02
638 646 7.200434 ACAATAGGTCAGATGGTATTCTTGT 57.800 36.000 0.00 0.00 0.00 3.16
640 648 8.768397 ACAATAGGTCAGATGGTATTCTTGTTA 58.232 33.333 0.00 0.00 0.00 2.41
641 649 9.613428 CAATAGGTCAGATGGTATTCTTGTTAA 57.387 33.333 0.00 0.00 0.00 2.01
643 651 9.784531 ATAGGTCAGATGGTATTCTTGTTAATG 57.215 33.333 0.00 0.00 0.00 1.90
644 652 7.861629 AGGTCAGATGGTATTCTTGTTAATGA 58.138 34.615 0.00 0.00 0.00 2.57
645 653 8.497745 AGGTCAGATGGTATTCTTGTTAATGAT 58.502 33.333 0.00 0.00 0.00 2.45
646 654 8.562892 GGTCAGATGGTATTCTTGTTAATGATG 58.437 37.037 0.00 0.00 0.00 3.07
647 655 9.113838 GTCAGATGGTATTCTTGTTAATGATGT 57.886 33.333 0.00 0.00 0.00 3.06
648 656 9.685276 TCAGATGGTATTCTTGTTAATGATGTT 57.315 29.630 0.00 0.00 0.00 2.71
649 657 9.941664 CAGATGGTATTCTTGTTAATGATGTTC 57.058 33.333 0.00 0.00 0.00 3.18
650 658 9.125026 AGATGGTATTCTTGTTAATGATGTTCC 57.875 33.333 0.00 0.00 0.00 3.62
651 659 7.315247 TGGTATTCTTGTTAATGATGTTCCG 57.685 36.000 0.00 0.00 0.00 4.30
652 660 6.317642 TGGTATTCTTGTTAATGATGTTCCGG 59.682 38.462 0.00 0.00 0.00 5.14
653 661 4.695217 TTCTTGTTAATGATGTTCCGGC 57.305 40.909 0.00 0.00 0.00 6.13
654 662 3.013921 TCTTGTTAATGATGTTCCGGCC 58.986 45.455 0.00 0.00 0.00 6.13
655 663 2.799126 TGTTAATGATGTTCCGGCCT 57.201 45.000 0.00 0.00 0.00 5.19
656 664 2.364632 TGTTAATGATGTTCCGGCCTG 58.635 47.619 0.00 0.00 0.00 4.85
657 665 2.290641 TGTTAATGATGTTCCGGCCTGT 60.291 45.455 0.00 0.00 0.00 4.00
658 666 2.036958 TAATGATGTTCCGGCCTGTG 57.963 50.000 0.00 0.00 0.00 3.66
659 667 0.038166 AATGATGTTCCGGCCTGTGT 59.962 50.000 0.00 0.00 0.00 3.72
660 668 0.677731 ATGATGTTCCGGCCTGTGTG 60.678 55.000 0.00 0.00 0.00 3.82
661 669 2.034066 ATGTTCCGGCCTGTGTGG 59.966 61.111 0.00 0.00 39.35 4.17
662 670 2.748058 GATGTTCCGGCCTGTGTGGT 62.748 60.000 0.00 0.00 38.35 4.16
664 672 3.164977 TTCCGGCCTGTGTGGTCA 61.165 61.111 0.00 0.00 41.50 4.02
665 673 2.747443 TTCCGGCCTGTGTGGTCAA 61.747 57.895 0.00 0.00 41.50 3.18
666 674 2.034066 CCGGCCTGTGTGGTCAAT 59.966 61.111 0.00 0.00 41.50 2.57
667 675 1.603455 CCGGCCTGTGTGGTCAATT 60.603 57.895 0.00 0.00 41.50 2.32
668 676 1.178534 CCGGCCTGTGTGGTCAATTT 61.179 55.000 0.00 0.00 41.50 1.82
669 677 0.673437 CGGCCTGTGTGGTCAATTTT 59.327 50.000 0.00 0.00 41.50 1.82
670 678 1.602668 CGGCCTGTGTGGTCAATTTTG 60.603 52.381 0.00 0.00 41.50 2.44
671 679 1.412343 GGCCTGTGTGGTCAATTTTGT 59.588 47.619 0.00 0.00 40.97 2.83
672 680 2.625790 GGCCTGTGTGGTCAATTTTGTA 59.374 45.455 0.00 0.00 40.97 2.41
674 682 4.262420 GGCCTGTGTGGTCAATTTTGTAAT 60.262 41.667 0.00 0.00 40.97 1.89
676 684 5.508825 GCCTGTGTGGTCAATTTTGTAATGA 60.509 40.000 0.00 0.00 38.35 2.57
677 685 6.151691 CCTGTGTGGTCAATTTTGTAATGAG 58.848 40.000 0.00 0.00 0.00 2.90
678 686 6.239008 CCTGTGTGGTCAATTTTGTAATGAGT 60.239 38.462 0.00 0.00 0.00 3.41
679 687 6.502652 TGTGTGGTCAATTTTGTAATGAGTG 58.497 36.000 0.00 0.00 0.00 3.51
680 688 6.319911 TGTGTGGTCAATTTTGTAATGAGTGA 59.680 34.615 0.00 0.00 0.00 3.41
681 689 7.014134 TGTGTGGTCAATTTTGTAATGAGTGAT 59.986 33.333 0.00 0.00 0.00 3.06
683 691 7.866898 TGTGGTCAATTTTGTAATGAGTGATTG 59.133 33.333 0.00 0.00 0.00 2.67
684 692 7.867403 GTGGTCAATTTTGTAATGAGTGATTGT 59.133 33.333 0.00 0.00 0.00 2.71
685 693 9.072375 TGGTCAATTTTGTAATGAGTGATTGTA 57.928 29.630 0.00 0.00 0.00 2.41
698 706 7.905604 TGAGTGATTGTAATAACTCTGTTGG 57.094 36.000 18.42 0.00 44.16 3.77
699 707 7.450074 TGAGTGATTGTAATAACTCTGTTGGT 58.550 34.615 18.42 0.00 44.16 3.67
700 708 7.936847 TGAGTGATTGTAATAACTCTGTTGGTT 59.063 33.333 18.42 0.00 44.16 3.67
702 710 9.787435 AGTGATTGTAATAACTCTGTTGGTTAA 57.213 29.630 0.00 0.00 33.67 2.01
704 712 9.787435 TGATTGTAATAACTCTGTTGGTTAAGT 57.213 29.630 0.00 0.00 33.67 2.24
718 726 9.273016 CTGTTGGTTAAGTAATATATGAGGTGG 57.727 37.037 0.00 0.00 0.00 4.61
719 727 8.774183 TGTTGGTTAAGTAATATATGAGGTGGT 58.226 33.333 0.00 0.00 0.00 4.16
720 728 9.623000 GTTGGTTAAGTAATATATGAGGTGGTT 57.377 33.333 0.00 0.00 0.00 3.67
967 1006 4.295119 GCCGACACCACACCTCGT 62.295 66.667 0.00 0.00 0.00 4.18
1035 1082 2.436824 GGCGACAGGAAGAAGGCC 60.437 66.667 0.00 0.00 0.00 5.19
1204 1259 1.134670 CAGATCTTTCCTGTCCCCGAC 60.135 57.143 0.00 0.00 0.00 4.79
1205 1260 0.178301 GATCTTTCCTGTCCCCGACC 59.822 60.000 0.00 0.00 0.00 4.79
1206 1261 1.272554 ATCTTTCCTGTCCCCGACCC 61.273 60.000 0.00 0.00 0.00 4.46
1207 1262 2.931649 TTTCCTGTCCCCGACCCC 60.932 66.667 0.00 0.00 0.00 4.95
1264 1323 5.296813 ACAGATAACTGATTTTGTTCGGC 57.703 39.130 7.05 0.00 46.03 5.54
1269 1334 1.069227 ACTGATTTTGTTCGGCGCTTC 60.069 47.619 7.64 0.00 0.00 3.86
1601 1694 8.035394 AGTTAGTTGGATCTTGTATGTAGTGTG 58.965 37.037 0.00 0.00 0.00 3.82
1606 1699 3.328382 TCTTGTATGTAGTGTGGTGGC 57.672 47.619 0.00 0.00 0.00 5.01
1664 1757 5.227569 TGTGTATCTGTGATTTCTGTGGT 57.772 39.130 0.00 0.00 0.00 4.16
1670 1763 5.241403 TCTGTGATTTCTGTGGTAATGGT 57.759 39.130 0.00 0.00 0.00 3.55
1671 1764 5.630121 TCTGTGATTTCTGTGGTAATGGTT 58.370 37.500 0.00 0.00 0.00 3.67
1721 1814 4.657504 TCTCCTGTGAATCTATGGCTGAAT 59.342 41.667 0.00 0.00 0.00 2.57
1725 1819 6.767902 TCCTGTGAATCTATGGCTGAATTAAC 59.232 38.462 0.00 0.00 0.00 2.01
1727 1821 6.422333 TGTGAATCTATGGCTGAATTAACCA 58.578 36.000 0.00 0.00 37.99 3.67
1733 1827 6.422333 TCTATGGCTGAATTAACCATGTGAA 58.578 36.000 13.89 0.00 43.93 3.18
1776 1871 2.997986 CTGAAGCATTTGGTTTGCATCC 59.002 45.455 0.00 0.00 42.62 3.51
1851 1947 8.777413 TCAACTTCAGTCAGTCATCTTAATTTG 58.223 33.333 0.00 0.00 0.00 2.32
1892 1990 7.324178 TCTTAATTTCTCAGTCAGTTCTAGCC 58.676 38.462 0.00 0.00 0.00 3.93
1894 1992 6.859112 AATTTCTCAGTCAGTTCTAGCCTA 57.141 37.500 0.00 0.00 0.00 3.93
1895 1993 7.430760 AATTTCTCAGTCAGTTCTAGCCTAT 57.569 36.000 0.00 0.00 0.00 2.57
1896 1994 6.859112 TTTCTCAGTCAGTTCTAGCCTATT 57.141 37.500 0.00 0.00 0.00 1.73
1900 1998 6.890268 TCTCAGTCAGTTCTAGCCTATTAACA 59.110 38.462 0.00 0.00 0.00 2.41
1903 2001 7.396339 TCAGTCAGTTCTAGCCTATTAACAGAA 59.604 37.037 0.00 0.00 0.00 3.02
1904 2002 7.489757 CAGTCAGTTCTAGCCTATTAACAGAAC 59.510 40.741 4.94 4.94 43.41 3.01
1905 2003 6.472808 GTCAGTTCTAGCCTATTAACAGAACG 59.527 42.308 7.02 3.79 46.15 3.95
1906 2004 6.376299 TCAGTTCTAGCCTATTAACAGAACGA 59.624 38.462 7.02 5.59 46.15 3.85
1908 2006 5.511234 TCTAGCCTATTAACAGAACGACC 57.489 43.478 0.00 0.00 0.00 4.79
1909 2007 4.951715 TCTAGCCTATTAACAGAACGACCA 59.048 41.667 0.00 0.00 0.00 4.02
1910 2008 4.124851 AGCCTATTAACAGAACGACCAG 57.875 45.455 0.00 0.00 0.00 4.00
1911 2009 3.118738 AGCCTATTAACAGAACGACCAGG 60.119 47.826 0.00 0.00 0.00 4.45
1912 2010 3.369157 GCCTATTAACAGAACGACCAGGT 60.369 47.826 0.00 0.00 0.00 4.00
1913 2011 4.828829 CCTATTAACAGAACGACCAGGTT 58.171 43.478 0.00 0.00 0.00 3.50
1914 2012 4.630069 CCTATTAACAGAACGACCAGGTTG 59.370 45.833 5.11 5.11 0.00 3.77
1915 2013 3.823281 TTAACAGAACGACCAGGTTGA 57.177 42.857 14.52 0.00 0.00 3.18
1916 2014 2.702592 AACAGAACGACCAGGTTGAA 57.297 45.000 14.52 0.00 0.00 2.69
1917 2015 2.702592 ACAGAACGACCAGGTTGAAA 57.297 45.000 14.52 0.00 0.00 2.69
1918 2016 2.285977 ACAGAACGACCAGGTTGAAAC 58.714 47.619 14.52 4.45 0.00 2.78
1941 2039 5.012354 ACCAATTGAATTTTCATCCAGCTGT 59.988 36.000 13.81 0.00 37.00 4.40
2072 2184 2.411547 GCGGACAGTTCAACTTTGATCG 60.412 50.000 0.00 0.00 37.00 3.69
2083 2195 1.281867 ACTTTGATCGATCCTTGCCCA 59.718 47.619 22.31 0.00 0.00 5.36
2101 2213 1.143684 CCATGTAGCTGGGCTGGTTAT 59.856 52.381 0.00 0.00 40.10 1.89
2109 2225 2.805657 GCTGGGCTGGTTATAGGTTACG 60.806 54.545 0.00 0.00 0.00 3.18
2115 2231 2.861935 CTGGTTATAGGTTACGTTGGCG 59.138 50.000 0.00 0.00 44.93 5.69
2167 2348 3.888323 TGCAAAATAGACTTTGGACTGCA 59.112 39.130 0.00 0.00 36.89 4.41
2258 2480 5.238650 AGAAATTAACACAGTAGCAGCGTTT 59.761 36.000 0.00 0.00 0.00 3.60
2319 2541 0.465460 AAGGGCGAGCACTGTGAAAA 60.465 50.000 12.86 0.00 0.00 2.29
2458 2680 0.251354 CTAGCTGCACTCCCACATGT 59.749 55.000 1.02 0.00 0.00 3.21
2484 2706 1.062488 ATCCCAGCCCCACTATCACC 61.062 60.000 0.00 0.00 0.00 4.02
2486 2708 2.757124 CCAGCCCCACTATCACCCC 61.757 68.421 0.00 0.00 0.00 4.95
2506 2880 3.506067 CCCCCTGTGAACAATTTCAGTAC 59.494 47.826 0.00 0.00 42.60 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.647715 ACACACTTTGCATTTTAGACACATAAC 59.352 33.333 0.00 0.00 0.00 1.89
23 24 1.476488 ACTTTCACCCACACACTTTGC 59.524 47.619 0.00 0.00 0.00 3.68
36 37 2.604912 AATCCCCCTTCCACTTTCAC 57.395 50.000 0.00 0.00 0.00 3.18
40 41 3.077391 TGATCAAAATCCCCCTTCCACTT 59.923 43.478 0.00 0.00 0.00 3.16
41 42 2.654385 TGATCAAAATCCCCCTTCCACT 59.346 45.455 0.00 0.00 0.00 4.00
77 78 3.716872 CCCAATCCAGTCTTACCACCTAT 59.283 47.826 0.00 0.00 0.00 2.57
126 127 3.599343 TGTGGCTCACATCAACTATGTC 58.401 45.455 4.16 0.00 46.15 3.06
142 143 5.041951 TCGACTTCACATATTTTTGTGGC 57.958 39.130 4.89 0.00 45.63 5.01
146 147 7.907045 CAGAGGATTCGACTTCACATATTTTTG 59.093 37.037 0.00 0.00 0.00 2.44
161 162 1.205655 CTGGCAAGTCAGAGGATTCGA 59.794 52.381 0.00 0.00 36.93 3.71
179 180 1.449956 GCTCTCTGGCTTGCCTCTG 60.450 63.158 13.18 3.74 0.00 3.35
190 191 5.814188 TGTAAAGATGCACAATAGCTCTCTG 59.186 40.000 0.00 0.00 34.99 3.35
194 195 7.953158 TCTATGTAAAGATGCACAATAGCTC 57.047 36.000 0.00 0.00 34.99 4.09
200 201 5.483811 TCCGTTCTATGTAAAGATGCACAA 58.516 37.500 0.00 0.00 0.00 3.33
201 202 5.079689 TCCGTTCTATGTAAAGATGCACA 57.920 39.130 0.00 0.00 0.00 4.57
206 207 6.834451 TCCTCTTCTCCGTTCTATGTAAAGAT 59.166 38.462 0.00 0.00 0.00 2.40
220 221 2.092861 TCTACCTGACTCCTCTTCTCCG 60.093 54.545 0.00 0.00 0.00 4.63
229 230 5.521544 GTCGACATTTATCTACCTGACTCC 58.478 45.833 11.55 0.00 0.00 3.85
238 239 4.041740 AGCTTGCGTCGACATTTATCTA 57.958 40.909 17.16 0.00 0.00 1.98
243 244 1.333619 ACAAAGCTTGCGTCGACATTT 59.666 42.857 17.16 3.53 0.00 2.32
244 245 0.944386 ACAAAGCTTGCGTCGACATT 59.056 45.000 17.16 0.00 0.00 2.71
245 246 0.235665 CACAAAGCTTGCGTCGACAT 59.764 50.000 17.16 0.00 0.00 3.06
246 247 1.641140 CACAAAGCTTGCGTCGACA 59.359 52.632 17.16 0.00 0.00 4.35
247 248 1.082756 CCACAAAGCTTGCGTCGAC 60.083 57.895 5.18 5.18 0.00 4.20
248 249 1.221466 CTCCACAAAGCTTGCGTCGA 61.221 55.000 0.00 0.00 0.00 4.20
249 250 1.205064 CTCCACAAAGCTTGCGTCG 59.795 57.895 0.00 0.00 0.00 5.12
250 251 0.514691 CTCTCCACAAAGCTTGCGTC 59.485 55.000 0.00 0.00 0.00 5.19
251 252 1.510480 GCTCTCCACAAAGCTTGCGT 61.510 55.000 0.00 0.00 35.60 5.24
253 254 0.886563 ATGCTCTCCACAAAGCTTGC 59.113 50.000 0.00 0.00 39.31 4.01
254 255 3.427233 GCTAATGCTCTCCACAAAGCTTG 60.427 47.826 0.00 0.00 39.31 4.01
255 256 2.751806 GCTAATGCTCTCCACAAAGCTT 59.248 45.455 0.00 0.00 39.31 3.74
257 258 1.063174 CGCTAATGCTCTCCACAAAGC 59.937 52.381 0.00 0.00 39.02 3.51
258 259 1.063174 GCGCTAATGCTCTCCACAAAG 59.937 52.381 0.00 0.00 36.97 2.77
260 261 0.250234 AGCGCTAATGCTCTCCACAA 59.750 50.000 8.99 0.00 42.95 3.33
261 262 0.460811 CAGCGCTAATGCTCTCCACA 60.461 55.000 10.99 0.00 45.23 4.17
262 263 1.770085 GCAGCGCTAATGCTCTCCAC 61.770 60.000 10.99 0.00 45.23 4.02
265 266 0.304098 CTTGCAGCGCTAATGCTCTC 59.696 55.000 19.22 0.00 45.23 3.20
269 270 0.795735 CACACTTGCAGCGCTAATGC 60.796 55.000 10.99 12.06 44.11 3.56
270 271 0.179181 CCACACTTGCAGCGCTAATG 60.179 55.000 10.99 6.80 0.00 1.90
271 272 1.308069 CCCACACTTGCAGCGCTAAT 61.308 55.000 10.99 0.00 0.00 1.73
272 273 1.965930 CCCACACTTGCAGCGCTAA 60.966 57.895 10.99 0.00 0.00 3.09
273 274 2.358615 CCCACACTTGCAGCGCTA 60.359 61.111 10.99 0.00 0.00 4.26
274 275 4.569180 ACCCACACTTGCAGCGCT 62.569 61.111 2.64 2.64 0.00 5.92
275 276 4.332637 CACCCACACTTGCAGCGC 62.333 66.667 0.00 0.00 0.00 5.92
276 277 2.901840 ACACCCACACTTGCAGCG 60.902 61.111 0.00 0.00 0.00 5.18
277 278 2.723746 CACACCCACACTTGCAGC 59.276 61.111 0.00 0.00 0.00 5.25
278 279 1.453745 ACCACACCCACACTTGCAG 60.454 57.895 0.00 0.00 0.00 4.41
279 280 1.752310 CACCACACCCACACTTGCA 60.752 57.895 0.00 0.00 0.00 4.08
280 281 2.489275 CCACCACACCCACACTTGC 61.489 63.158 0.00 0.00 0.00 4.01
281 282 2.489275 GCCACCACACCCACACTTG 61.489 63.158 0.00 0.00 0.00 3.16
282 283 1.349542 TAGCCACCACACCCACACTT 61.350 55.000 0.00 0.00 0.00 3.16
283 284 1.768482 TAGCCACCACACCCACACT 60.768 57.895 0.00 0.00 0.00 3.55
284 285 1.302511 CTAGCCACCACACCCACAC 60.303 63.158 0.00 0.00 0.00 3.82
285 286 2.525124 CCTAGCCACCACACCCACA 61.525 63.158 0.00 0.00 0.00 4.17
286 287 1.774894 TTCCTAGCCACCACACCCAC 61.775 60.000 0.00 0.00 0.00 4.61
287 288 1.462432 TTCCTAGCCACCACACCCA 60.462 57.895 0.00 0.00 0.00 4.51
288 289 1.002502 GTTCCTAGCCACCACACCC 60.003 63.158 0.00 0.00 0.00 4.61
289 290 0.036294 GAGTTCCTAGCCACCACACC 60.036 60.000 0.00 0.00 0.00 4.16
290 291 0.036294 GGAGTTCCTAGCCACCACAC 60.036 60.000 0.00 0.00 0.00 3.82
291 292 0.178903 AGGAGTTCCTAGCCACCACA 60.179 55.000 0.00 0.00 46.48 4.17
292 293 2.685202 AGGAGTTCCTAGCCACCAC 58.315 57.895 0.00 0.00 46.48 4.16
298 299 5.938950 GGCATTTCCAAAGGAGTTCCTAGC 61.939 50.000 0.14 0.00 39.24 3.42
299 300 3.696548 GGCATTTCCAAAGGAGTTCCTAG 59.303 47.826 0.14 0.00 39.24 3.02
300 301 3.075283 TGGCATTTCCAAAGGAGTTCCTA 59.925 43.478 0.14 0.00 43.18 2.94
301 302 2.158325 TGGCATTTCCAAAGGAGTTCCT 60.158 45.455 0.00 0.00 44.33 3.36
302 303 2.247358 TGGCATTTCCAAAGGAGTTCC 58.753 47.619 0.00 0.00 43.21 3.62
314 315 4.248058 CCAAGAGGAAACAATGGCATTTC 58.752 43.478 10.65 6.75 36.89 2.17
315 316 3.008266 CCCAAGAGGAAACAATGGCATTT 59.992 43.478 10.65 0.00 38.24 2.32
316 317 2.568509 CCCAAGAGGAAACAATGGCATT 59.431 45.455 6.96 6.96 38.24 3.56
317 318 2.181975 CCCAAGAGGAAACAATGGCAT 58.818 47.619 0.00 0.00 38.24 4.40
318 319 1.146774 TCCCAAGAGGAAACAATGGCA 59.853 47.619 0.00 0.00 43.78 4.92
319 320 1.923356 TCCCAAGAGGAAACAATGGC 58.077 50.000 0.00 0.00 43.78 4.40
329 330 1.972872 CCCGATGAAATCCCAAGAGG 58.027 55.000 0.00 0.00 41.39 3.69
330 331 1.312815 GCCCGATGAAATCCCAAGAG 58.687 55.000 0.00 0.00 41.39 2.85
331 332 0.463654 CGCCCGATGAAATCCCAAGA 60.464 55.000 0.00 0.00 41.39 3.02
332 333 0.748005 ACGCCCGATGAAATCCCAAG 60.748 55.000 0.00 0.00 41.39 3.61
333 334 0.322997 AACGCCCGATGAAATCCCAA 60.323 50.000 0.00 0.00 41.39 4.12
334 335 1.029408 CAACGCCCGATGAAATCCCA 61.029 55.000 0.00 0.00 41.39 4.37
335 336 1.029947 ACAACGCCCGATGAAATCCC 61.030 55.000 4.95 0.00 41.39 3.85
336 337 1.658994 TACAACGCCCGATGAAATCC 58.341 50.000 4.95 0.00 41.39 3.01
337 338 3.750639 TTTACAACGCCCGATGAAATC 57.249 42.857 4.95 0.00 40.89 2.17
338 339 3.672241 GCTTTTACAACGCCCGATGAAAT 60.672 43.478 4.95 0.00 0.00 2.17
339 340 2.350964 GCTTTTACAACGCCCGATGAAA 60.351 45.455 4.95 0.00 0.00 2.69
340 341 1.198178 GCTTTTACAACGCCCGATGAA 59.802 47.619 4.95 0.00 0.00 2.57
341 342 0.800012 GCTTTTACAACGCCCGATGA 59.200 50.000 4.95 0.00 0.00 2.92
342 343 0.519519 TGCTTTTACAACGCCCGATG 59.480 50.000 0.00 0.00 0.00 3.84
343 344 0.519961 GTGCTTTTACAACGCCCGAT 59.480 50.000 0.00 0.00 0.00 4.18
344 345 1.833434 CGTGCTTTTACAACGCCCGA 61.833 55.000 0.00 0.00 0.00 5.14
345 346 1.439693 CGTGCTTTTACAACGCCCG 60.440 57.895 0.00 0.00 0.00 6.13
346 347 1.081708 CCGTGCTTTTACAACGCCC 60.082 57.895 0.00 0.00 0.00 6.13
347 348 0.110373 CTCCGTGCTTTTACAACGCC 60.110 55.000 0.00 0.00 0.00 5.68
348 349 0.110373 CCTCCGTGCTTTTACAACGC 60.110 55.000 0.00 0.00 0.00 4.84
349 350 1.504359 TCCTCCGTGCTTTTACAACG 58.496 50.000 0.00 0.00 0.00 4.10
350 351 2.350484 GCTTCCTCCGTGCTTTTACAAC 60.350 50.000 0.00 0.00 0.00 3.32
351 352 1.877443 GCTTCCTCCGTGCTTTTACAA 59.123 47.619 0.00 0.00 0.00 2.41
352 353 1.519408 GCTTCCTCCGTGCTTTTACA 58.481 50.000 0.00 0.00 0.00 2.41
353 354 0.442699 CGCTTCCTCCGTGCTTTTAC 59.557 55.000 0.00 0.00 0.00 2.01
354 355 0.672401 CCGCTTCCTCCGTGCTTTTA 60.672 55.000 0.00 0.00 0.00 1.52
355 356 1.966451 CCGCTTCCTCCGTGCTTTT 60.966 57.895 0.00 0.00 0.00 2.27
356 357 2.358737 CCGCTTCCTCCGTGCTTT 60.359 61.111 0.00 0.00 0.00 3.51
357 358 2.879233 TTCCGCTTCCTCCGTGCTT 61.879 57.895 0.00 0.00 0.00 3.91
358 359 3.311110 TTCCGCTTCCTCCGTGCT 61.311 61.111 0.00 0.00 0.00 4.40
359 360 3.119096 GTTCCGCTTCCTCCGTGC 61.119 66.667 0.00 0.00 0.00 5.34
360 361 1.446272 GAGTTCCGCTTCCTCCGTG 60.446 63.158 0.00 0.00 0.00 4.94
361 362 2.647158 GGAGTTCCGCTTCCTCCGT 61.647 63.158 0.00 0.00 35.79 4.69
362 363 2.184579 GGAGTTCCGCTTCCTCCG 59.815 66.667 0.00 0.00 35.79 4.63
372 373 1.678970 AATGCAAGCCCGGAGTTCC 60.679 57.895 0.73 0.00 0.00 3.62
373 374 1.508088 CAATGCAAGCCCGGAGTTC 59.492 57.895 0.73 0.00 0.00 3.01
374 375 2.639327 GCAATGCAAGCCCGGAGTT 61.639 57.895 0.73 0.00 0.00 3.01
375 376 3.064324 GCAATGCAAGCCCGGAGT 61.064 61.111 0.73 0.00 0.00 3.85
376 377 2.753043 AGCAATGCAAGCCCGGAG 60.753 61.111 8.35 0.00 0.00 4.63
377 378 3.063704 CAGCAATGCAAGCCCGGA 61.064 61.111 8.35 0.00 0.00 5.14
378 379 4.137872 CCAGCAATGCAAGCCCGG 62.138 66.667 8.35 0.00 0.00 5.73
379 380 3.346631 GACCAGCAATGCAAGCCCG 62.347 63.158 8.35 4.33 0.00 6.13
380 381 1.941999 GAGACCAGCAATGCAAGCCC 61.942 60.000 8.35 0.00 0.00 5.19
381 382 0.964358 AGAGACCAGCAATGCAAGCC 60.964 55.000 8.35 0.00 0.00 4.35
382 383 1.742761 TAGAGACCAGCAATGCAAGC 58.257 50.000 8.35 6.40 0.00 4.01
383 384 5.873712 CCTATATAGAGACCAGCAATGCAAG 59.126 44.000 11.53 0.00 0.00 4.01
384 385 5.307976 ACCTATATAGAGACCAGCAATGCAA 59.692 40.000 11.53 0.00 0.00 4.08
385 386 4.840680 ACCTATATAGAGACCAGCAATGCA 59.159 41.667 11.53 0.00 0.00 3.96
386 387 5.413309 ACCTATATAGAGACCAGCAATGC 57.587 43.478 11.53 0.00 0.00 3.56
387 388 8.194104 GTGATACCTATATAGAGACCAGCAATG 58.806 40.741 11.53 0.00 0.00 2.82
388 389 7.895962 TGTGATACCTATATAGAGACCAGCAAT 59.104 37.037 11.53 0.00 0.00 3.56
389 390 7.176865 GTGTGATACCTATATAGAGACCAGCAA 59.823 40.741 11.53 0.00 0.00 3.91
390 391 6.659668 GTGTGATACCTATATAGAGACCAGCA 59.340 42.308 11.53 0.07 0.00 4.41
391 392 6.887545 AGTGTGATACCTATATAGAGACCAGC 59.112 42.308 11.53 0.00 0.00 4.85
392 393 7.554835 GGAGTGTGATACCTATATAGAGACCAG 59.445 44.444 11.53 0.00 0.00 4.00
393 394 7.018249 TGGAGTGTGATACCTATATAGAGACCA 59.982 40.741 11.53 1.74 0.00 4.02
394 395 7.337436 GTGGAGTGTGATACCTATATAGAGACC 59.663 44.444 11.53 0.00 0.00 3.85
395 396 7.883833 TGTGGAGTGTGATACCTATATAGAGAC 59.116 40.741 11.53 0.00 0.00 3.36
396 397 7.985589 TGTGGAGTGTGATACCTATATAGAGA 58.014 38.462 11.53 0.00 0.00 3.10
397 398 8.637196 TTGTGGAGTGTGATACCTATATAGAG 57.363 38.462 11.53 4.25 0.00 2.43
398 399 9.244292 GATTGTGGAGTGTGATACCTATATAGA 57.756 37.037 11.53 0.00 0.00 1.98
399 400 9.249053 AGATTGTGGAGTGTGATACCTATATAG 57.751 37.037 2.46 2.46 0.00 1.31
400 401 9.601810 AAGATTGTGGAGTGTGATACCTATATA 57.398 33.333 0.00 0.00 0.00 0.86
401 402 8.497910 AAGATTGTGGAGTGTGATACCTATAT 57.502 34.615 0.00 0.00 0.00 0.86
402 403 7.914427 AAGATTGTGGAGTGTGATACCTATA 57.086 36.000 0.00 0.00 0.00 1.31
403 404 6.814954 AAGATTGTGGAGTGTGATACCTAT 57.185 37.500 0.00 0.00 0.00 2.57
404 405 7.914427 ATAAGATTGTGGAGTGTGATACCTA 57.086 36.000 0.00 0.00 0.00 3.08
405 406 6.814954 ATAAGATTGTGGAGTGTGATACCT 57.185 37.500 0.00 0.00 0.00 3.08
406 407 9.561069 AATTATAAGATTGTGGAGTGTGATACC 57.439 33.333 0.00 0.00 0.00 2.73
427 428 9.561069 AAACACACAGTCAGTCTCTAAAATTAT 57.439 29.630 0.00 0.00 0.00 1.28
430 431 6.823689 ACAAACACACAGTCAGTCTCTAAAAT 59.176 34.615 0.00 0.00 0.00 1.82
432 433 5.730550 ACAAACACACAGTCAGTCTCTAAA 58.269 37.500 0.00 0.00 0.00 1.85
435 436 3.895232 ACAAACACACAGTCAGTCTCT 57.105 42.857 0.00 0.00 0.00 3.10
436 437 5.005779 CACTAACAAACACACAGTCAGTCTC 59.994 44.000 0.00 0.00 0.00 3.36
437 438 4.870426 CACTAACAAACACACAGTCAGTCT 59.130 41.667 0.00 0.00 0.00 3.24
440 441 3.544048 CGCACTAACAAACACACAGTCAG 60.544 47.826 0.00 0.00 0.00 3.51
442 443 2.350498 ACGCACTAACAAACACACAGTC 59.650 45.455 0.00 0.00 0.00 3.51
448 449 3.844943 GCAAGAGACGCACTAACAAACAC 60.845 47.826 0.00 0.00 0.00 3.32
452 453 2.232756 TGCAAGAGACGCACTAACAA 57.767 45.000 0.00 0.00 33.55 2.83
453 454 2.232756 TTGCAAGAGACGCACTAACA 57.767 45.000 0.00 0.00 39.59 2.41
454 455 2.096218 CCTTTGCAAGAGACGCACTAAC 60.096 50.000 0.00 0.00 39.59 2.34
456 457 1.343142 TCCTTTGCAAGAGACGCACTA 59.657 47.619 0.00 0.00 39.59 2.74
457 458 0.106708 TCCTTTGCAAGAGACGCACT 59.893 50.000 0.00 0.00 39.59 4.40
458 459 0.944386 TTCCTTTGCAAGAGACGCAC 59.056 50.000 0.00 0.00 39.59 5.34
459 460 1.603802 CTTTCCTTTGCAAGAGACGCA 59.396 47.619 0.00 0.00 37.68 5.24
460 461 1.604278 ACTTTCCTTTGCAAGAGACGC 59.396 47.619 0.00 0.00 0.00 5.19
461 462 3.971032 AACTTTCCTTTGCAAGAGACG 57.029 42.857 0.00 0.00 0.00 4.18
462 463 5.516696 GTCAAAACTTTCCTTTGCAAGAGAC 59.483 40.000 0.00 0.00 34.43 3.36
463 464 5.184864 TGTCAAAACTTTCCTTTGCAAGAGA 59.815 36.000 0.00 0.00 34.43 3.10
464 465 5.410067 TGTCAAAACTTTCCTTTGCAAGAG 58.590 37.500 0.00 0.45 34.43 2.85
465 466 5.398603 TGTCAAAACTTTCCTTTGCAAGA 57.601 34.783 0.00 0.00 34.43 3.02
466 467 4.567959 CCTGTCAAAACTTTCCTTTGCAAG 59.432 41.667 0.00 0.00 34.43 4.01
467 468 4.020662 ACCTGTCAAAACTTTCCTTTGCAA 60.021 37.500 0.00 0.00 34.43 4.08
469 470 4.112634 GACCTGTCAAAACTTTCCTTTGC 58.887 43.478 0.00 0.00 34.43 3.68
470 471 5.323371 TGACCTGTCAAAACTTTCCTTTG 57.677 39.130 0.00 0.00 36.53 2.77
471 472 4.142160 GCTGACCTGTCAAAACTTTCCTTT 60.142 41.667 1.14 0.00 39.39 3.11
472 473 3.381590 GCTGACCTGTCAAAACTTTCCTT 59.618 43.478 1.14 0.00 39.39 3.36
473 474 2.952310 GCTGACCTGTCAAAACTTTCCT 59.048 45.455 1.14 0.00 39.39 3.36
475 476 2.854805 GCGCTGACCTGTCAAAACTTTC 60.855 50.000 0.00 0.00 39.39 2.62
476 477 1.065551 GCGCTGACCTGTCAAAACTTT 59.934 47.619 0.00 0.00 39.39 2.66
479 487 1.508632 TAGCGCTGACCTGTCAAAAC 58.491 50.000 22.90 0.00 39.39 2.43
483 491 3.603158 TTAAATAGCGCTGACCTGTCA 57.397 42.857 22.90 0.00 38.06 3.58
486 494 5.484173 TCAAATTAAATAGCGCTGACCTG 57.516 39.130 22.90 6.50 0.00 4.00
490 498 6.597672 TCCTTCTTCAAATTAAATAGCGCTGA 59.402 34.615 22.90 2.60 0.00 4.26
503 511 9.525826 AGATACTCATTGTTTCCTTCTTCAAAT 57.474 29.630 0.00 0.00 0.00 2.32
506 514 7.106239 GGAGATACTCATTGTTTCCTTCTTCA 58.894 38.462 0.00 0.00 31.08 3.02
508 516 7.020827 TGGAGATACTCATTGTTTCCTTCTT 57.979 36.000 0.00 0.00 31.08 2.52
509 517 6.627087 TGGAGATACTCATTGTTTCCTTCT 57.373 37.500 0.00 0.00 31.08 2.85
510 518 7.106239 TCTTGGAGATACTCATTGTTTCCTTC 58.894 38.462 0.00 0.00 31.08 3.46
511 519 7.020827 TCTTGGAGATACTCATTGTTTCCTT 57.979 36.000 0.00 0.00 31.08 3.36
512 520 6.627087 TCTTGGAGATACTCATTGTTTCCT 57.373 37.500 0.00 0.00 31.08 3.36
513 521 6.238593 GCATCTTGGAGATACTCATTGTTTCC 60.239 42.308 0.00 0.00 32.12 3.13
515 523 6.421485 AGCATCTTGGAGATACTCATTGTTT 58.579 36.000 0.00 0.00 32.12 2.83
517 525 5.627182 AGCATCTTGGAGATACTCATTGT 57.373 39.130 0.00 0.00 32.12 2.71
518 526 6.519382 TGTAGCATCTTGGAGATACTCATTG 58.481 40.000 0.00 0.00 32.12 2.82
520 528 6.931790 ATGTAGCATCTTGGAGATACTCAT 57.068 37.500 0.00 0.00 32.12 2.90
521 529 6.435591 CCTATGTAGCATCTTGGAGATACTCA 59.564 42.308 0.00 0.00 32.12 3.41
522 530 6.435904 ACCTATGTAGCATCTTGGAGATACTC 59.564 42.308 0.00 0.00 32.12 2.59
523 531 6.318913 ACCTATGTAGCATCTTGGAGATACT 58.681 40.000 0.00 0.00 32.12 2.12
524 532 6.597832 ACCTATGTAGCATCTTGGAGATAC 57.402 41.667 0.00 0.00 32.12 2.24
526 534 5.604231 TGAACCTATGTAGCATCTTGGAGAT 59.396 40.000 0.00 0.00 34.74 2.75
527 535 4.962362 TGAACCTATGTAGCATCTTGGAGA 59.038 41.667 0.00 0.00 0.00 3.71
528 536 5.282055 TGAACCTATGTAGCATCTTGGAG 57.718 43.478 0.00 0.00 0.00 3.86
530 538 6.757897 TTTTGAACCTATGTAGCATCTTGG 57.242 37.500 0.00 0.00 0.00 3.61
532 540 9.023962 TGAAATTTTGAACCTATGTAGCATCTT 57.976 29.630 0.00 0.00 0.00 2.40
533 541 8.579850 TGAAATTTTGAACCTATGTAGCATCT 57.420 30.769 0.00 0.00 0.00 2.90
534 542 9.638239 TTTGAAATTTTGAACCTATGTAGCATC 57.362 29.630 0.00 0.00 0.00 3.91
535 543 9.643693 CTTTGAAATTTTGAACCTATGTAGCAT 57.356 29.630 0.00 0.00 0.00 3.79
536 544 8.855110 TCTTTGAAATTTTGAACCTATGTAGCA 58.145 29.630 0.00 0.00 0.00 3.49
537 545 9.860898 ATCTTTGAAATTTTGAACCTATGTAGC 57.139 29.630 0.00 0.00 0.00 3.58
554 562 9.373603 CATTGGCTGAATGATTAATCTTTGAAA 57.626 29.630 18.40 5.35 43.87 2.69
556 564 7.977293 CACATTGGCTGAATGATTAATCTTTGA 59.023 33.333 18.40 11.07 43.87 2.69
557 565 7.223971 CCACATTGGCTGAATGATTAATCTTTG 59.776 37.037 18.40 8.55 43.87 2.77
559 567 6.381994 ACCACATTGGCTGAATGATTAATCTT 59.618 34.615 16.24 7.48 43.87 2.40
560 568 5.895534 ACCACATTGGCTGAATGATTAATCT 59.104 36.000 16.24 0.00 43.87 2.40
561 569 5.981315 CACCACATTGGCTGAATGATTAATC 59.019 40.000 8.60 8.60 43.87 1.75
562 570 5.163385 CCACCACATTGGCTGAATGATTAAT 60.163 40.000 13.75 0.00 43.87 1.40
563 571 4.160065 CCACCACATTGGCTGAATGATTAA 59.840 41.667 13.75 0.00 43.87 1.40
564 572 3.700539 CCACCACATTGGCTGAATGATTA 59.299 43.478 13.75 0.00 43.87 1.75
565 573 2.498481 CCACCACATTGGCTGAATGATT 59.502 45.455 13.75 0.00 43.87 2.57
566 574 2.104967 CCACCACATTGGCTGAATGAT 58.895 47.619 13.75 0.00 43.87 2.45
575 583 1.843368 AAGATGAGCCACCACATTGG 58.157 50.000 0.00 0.00 45.02 3.16
576 584 4.735578 GCAATAAGATGAGCCACCACATTG 60.736 45.833 0.00 0.00 0.00 2.82
577 585 3.382546 GCAATAAGATGAGCCACCACATT 59.617 43.478 0.00 0.00 0.00 2.71
580 588 2.648059 AGCAATAAGATGAGCCACCAC 58.352 47.619 0.00 0.00 0.00 4.16
582 590 4.455606 ACTTAGCAATAAGATGAGCCACC 58.544 43.478 2.19 0.00 0.00 4.61
583 591 8.091449 ACTATACTTAGCAATAAGATGAGCCAC 58.909 37.037 2.19 0.00 0.00 5.01
584 592 8.195165 ACTATACTTAGCAATAAGATGAGCCA 57.805 34.615 2.19 0.00 0.00 4.75
585 593 9.495572 AAACTATACTTAGCAATAAGATGAGCC 57.504 33.333 2.19 0.00 0.00 4.70
596 604 9.953565 ACCTATTGTCAAAACTATACTTAGCAA 57.046 29.630 0.00 0.00 0.00 3.91
597 605 9.595823 GACCTATTGTCAAAACTATACTTAGCA 57.404 33.333 0.00 0.00 43.85 3.49
615 623 9.613428 TTAACAAGAATACCATCTGACCTATTG 57.387 33.333 0.00 0.00 0.00 1.90
617 625 9.784531 CATTAACAAGAATACCATCTGACCTAT 57.215 33.333 0.00 0.00 0.00 2.57
618 626 8.988060 TCATTAACAAGAATACCATCTGACCTA 58.012 33.333 0.00 0.00 0.00 3.08
619 627 7.861629 TCATTAACAAGAATACCATCTGACCT 58.138 34.615 0.00 0.00 0.00 3.85
620 628 8.562892 CATCATTAACAAGAATACCATCTGACC 58.437 37.037 0.00 0.00 0.00 4.02
621 629 9.113838 ACATCATTAACAAGAATACCATCTGAC 57.886 33.333 0.00 0.00 0.00 3.51
623 631 9.941664 GAACATCATTAACAAGAATACCATCTG 57.058 33.333 0.00 0.00 0.00 2.90
625 633 8.070171 CGGAACATCATTAACAAGAATACCATC 58.930 37.037 0.00 0.00 0.00 3.51
626 634 7.013274 CCGGAACATCATTAACAAGAATACCAT 59.987 37.037 0.00 0.00 0.00 3.55
627 635 6.317642 CCGGAACATCATTAACAAGAATACCA 59.682 38.462 0.00 0.00 0.00 3.25
628 636 6.725246 CCGGAACATCATTAACAAGAATACC 58.275 40.000 0.00 0.00 0.00 2.73
629 637 6.199393 GCCGGAACATCATTAACAAGAATAC 58.801 40.000 5.05 0.00 0.00 1.89
630 638 5.298276 GGCCGGAACATCATTAACAAGAATA 59.702 40.000 5.05 0.00 0.00 1.75
634 642 3.016736 AGGCCGGAACATCATTAACAAG 58.983 45.455 5.05 0.00 0.00 3.16
635 643 2.752354 CAGGCCGGAACATCATTAACAA 59.248 45.455 5.05 0.00 0.00 2.83
636 644 2.290641 ACAGGCCGGAACATCATTAACA 60.291 45.455 10.86 0.00 0.00 2.41
637 645 2.097466 CACAGGCCGGAACATCATTAAC 59.903 50.000 10.86 0.00 0.00 2.01
638 646 2.290641 ACACAGGCCGGAACATCATTAA 60.291 45.455 10.86 0.00 0.00 1.40
640 648 0.038166 ACACAGGCCGGAACATCATT 59.962 50.000 10.86 0.00 0.00 2.57
641 649 0.677731 CACACAGGCCGGAACATCAT 60.678 55.000 10.86 0.00 0.00 2.45
643 651 2.040544 CCACACAGGCCGGAACATC 61.041 63.158 10.86 0.00 0.00 3.06
644 652 2.034066 CCACACAGGCCGGAACAT 59.966 61.111 10.86 0.00 0.00 2.71
645 653 3.469863 GACCACACAGGCCGGAACA 62.470 63.158 10.86 0.00 43.14 3.18
646 654 2.668550 GACCACACAGGCCGGAAC 60.669 66.667 10.86 0.00 43.14 3.62
647 655 2.063015 ATTGACCACACAGGCCGGAA 62.063 55.000 10.86 0.00 43.14 4.30
648 656 2.063015 AATTGACCACACAGGCCGGA 62.063 55.000 10.86 0.00 43.14 5.14
649 657 1.178534 AAATTGACCACACAGGCCGG 61.179 55.000 0.00 0.00 43.14 6.13
650 658 0.673437 AAAATTGACCACACAGGCCG 59.327 50.000 0.00 0.00 43.14 6.13
651 659 1.412343 ACAAAATTGACCACACAGGCC 59.588 47.619 0.00 0.00 43.14 5.19
652 660 2.888834 ACAAAATTGACCACACAGGC 57.111 45.000 0.00 0.00 43.14 4.85
653 661 6.083098 TCATTACAAAATTGACCACACAGG 57.917 37.500 0.00 0.00 45.67 4.00
654 662 6.638063 CACTCATTACAAAATTGACCACACAG 59.362 38.462 0.00 0.00 0.00 3.66
655 663 6.319911 TCACTCATTACAAAATTGACCACACA 59.680 34.615 0.00 0.00 0.00 3.72
656 664 6.734137 TCACTCATTACAAAATTGACCACAC 58.266 36.000 0.00 0.00 0.00 3.82
657 665 6.951062 TCACTCATTACAAAATTGACCACA 57.049 33.333 0.00 0.00 0.00 4.17
658 666 7.867403 ACAATCACTCATTACAAAATTGACCAC 59.133 33.333 0.00 0.00 0.00 4.16
659 667 7.950512 ACAATCACTCATTACAAAATTGACCA 58.049 30.769 0.00 0.00 0.00 4.02
660 668 9.906660 TTACAATCACTCATTACAAAATTGACC 57.093 29.630 0.00 0.00 0.00 4.02
672 680 8.950210 CCAACAGAGTTATTACAATCACTCATT 58.050 33.333 15.24 8.54 40.44 2.57
674 682 7.450074 ACCAACAGAGTTATTACAATCACTCA 58.550 34.615 15.24 0.00 40.44 3.41
676 684 9.787435 TTAACCAACAGAGTTATTACAATCACT 57.213 29.630 0.00 0.00 30.17 3.41
678 686 9.787435 ACTTAACCAACAGAGTTATTACAATCA 57.213 29.630 0.00 0.00 30.17 2.57
692 700 9.273016 CCACCTCATATATTACTTAACCAACAG 57.727 37.037 0.00 0.00 0.00 3.16
693 701 8.774183 ACCACCTCATATATTACTTAACCAACA 58.226 33.333 0.00 0.00 0.00 3.33
694 702 9.623000 AACCACCTCATATATTACTTAACCAAC 57.377 33.333 0.00 0.00 0.00 3.77
730 738 9.007901 GCAGAGATCAGCCTATGTATTTTATTT 57.992 33.333 0.00 0.00 0.00 1.40
731 739 8.381636 AGCAGAGATCAGCCTATGTATTTTATT 58.618 33.333 0.00 0.00 0.00 1.40
732 740 7.915930 AGCAGAGATCAGCCTATGTATTTTAT 58.084 34.615 0.00 0.00 0.00 1.40
733 741 7.234371 AGAGCAGAGATCAGCCTATGTATTTTA 59.766 37.037 0.00 0.00 0.00 1.52
734 742 6.043012 AGAGCAGAGATCAGCCTATGTATTTT 59.957 38.462 0.00 0.00 0.00 1.82
735 743 5.543405 AGAGCAGAGATCAGCCTATGTATTT 59.457 40.000 0.00 0.00 0.00 1.40
876 899 2.882366 GCGCGGCTTTTATCGGAGG 61.882 63.158 8.83 0.00 0.00 4.30
1017 1064 2.347490 GCCTTCTTCCTGTCGCCA 59.653 61.111 0.00 0.00 0.00 5.69
1035 1082 3.909258 CTTGACGGACCGGGTCACG 62.909 68.421 27.32 26.58 43.59 4.35
1204 1259 1.817099 GCAGAACAGATGCTCGGGG 60.817 63.158 0.00 0.00 40.59 5.73
1205 1260 3.805267 GCAGAACAGATGCTCGGG 58.195 61.111 0.00 0.00 40.59 5.14
1264 1323 2.005451 CAGGACCTGAGATTTGAAGCG 58.995 52.381 17.22 0.00 32.44 4.68
1269 1334 1.558756 AGCTCCAGGACCTGAGATTTG 59.441 52.381 23.77 4.93 32.44 2.32
1601 1694 0.259938 ATCTGATGAAAGGGGCCACC 59.740 55.000 0.00 0.57 40.67 4.61
1606 1699 3.323115 TCATCGAGATCTGATGAAAGGGG 59.677 47.826 23.88 7.32 46.77 4.79
1664 1757 8.359875 TGAAAGGATTGCATCTTTAACCATTA 57.640 30.769 9.27 0.00 33.85 1.90
1721 1814 6.514870 GCAGTGACAAAGATTCACATGGTTAA 60.515 38.462 0.00 0.00 45.00 2.01
1725 1819 3.366679 GGCAGTGACAAAGATTCACATGG 60.367 47.826 0.00 0.00 45.00 3.66
1727 1821 3.759581 AGGCAGTGACAAAGATTCACAT 58.240 40.909 0.00 0.00 45.00 3.21
1757 1852 1.994779 CGGATGCAAACCAAATGCTTC 59.005 47.619 12.59 6.00 44.14 3.86
1776 1871 1.726791 CACGGACCAGTCTCATTTTCG 59.273 52.381 0.00 0.00 0.00 3.46
1871 1969 5.753721 AGGCTAGAACTGACTGAGAAATT 57.246 39.130 0.00 0.00 0.00 1.82
1873 1971 6.859112 AATAGGCTAGAACTGACTGAGAAA 57.141 37.500 0.00 0.00 0.00 2.52
1882 1980 6.472808 GTCGTTCTGTTAATAGGCTAGAACTG 59.527 42.308 18.41 17.38 42.96 3.16
1884 1982 5.747675 GGTCGTTCTGTTAATAGGCTAGAAC 59.252 44.000 13.21 13.21 42.18 3.01
1888 1986 4.098960 CCTGGTCGTTCTGTTAATAGGCTA 59.901 45.833 0.00 0.00 0.00 3.93
1890 1988 3.195661 CCTGGTCGTTCTGTTAATAGGC 58.804 50.000 0.00 0.00 0.00 3.93
1892 1990 5.475719 TCAACCTGGTCGTTCTGTTAATAG 58.524 41.667 0.00 0.00 0.00 1.73
1894 1992 4.345859 TCAACCTGGTCGTTCTGTTAAT 57.654 40.909 0.00 0.00 0.00 1.40
1895 1993 3.823281 TCAACCTGGTCGTTCTGTTAA 57.177 42.857 0.00 0.00 0.00 2.01
1896 1994 3.823281 TTCAACCTGGTCGTTCTGTTA 57.177 42.857 0.00 0.00 0.00 2.41
1900 1998 1.963172 GGTTTCAACCTGGTCGTTCT 58.037 50.000 0.00 0.00 45.75 3.01
1906 2004 7.799315 TGAAAATTCAATTGGTTTCAACCTGGT 60.799 33.333 20.76 0.00 41.03 4.00
1908 2006 7.551035 TGAAAATTCAATTGGTTTCAACCTG 57.449 32.000 20.76 0.70 41.03 4.00
1909 2007 7.445096 GGATGAAAATTCAATTGGTTTCAACCT 59.555 33.333 28.27 18.16 43.84 3.50
1910 2008 7.228308 TGGATGAAAATTCAATTGGTTTCAACC 59.772 33.333 28.52 28.52 45.74 3.77
1911 2009 8.152309 TGGATGAAAATTCAATTGGTTTCAAC 57.848 30.769 24.00 21.88 41.77 3.18
1912 2010 7.041235 GCTGGATGAAAATTCAATTGGTTTCAA 60.041 33.333 24.00 14.21 41.77 2.69
1913 2011 6.427547 GCTGGATGAAAATTCAATTGGTTTCA 59.572 34.615 23.15 23.15 42.42 2.69
1914 2012 6.652062 AGCTGGATGAAAATTCAATTGGTTTC 59.348 34.615 16.69 16.69 41.13 2.78
1915 2013 6.428771 CAGCTGGATGAAAATTCAATTGGTTT 59.571 34.615 5.57 4.89 41.13 3.27
1916 2014 5.935789 CAGCTGGATGAAAATTCAATTGGTT 59.064 36.000 5.57 0.00 41.13 3.67
1917 2015 5.012354 ACAGCTGGATGAAAATTCAATTGGT 59.988 36.000 19.93 0.00 41.13 3.67
1918 2016 5.484715 ACAGCTGGATGAAAATTCAATTGG 58.515 37.500 19.93 0.00 41.13 3.16
1919 2017 6.755141 CCTACAGCTGGATGAAAATTCAATTG 59.245 38.462 19.93 0.00 41.13 2.32
1920 2018 6.664816 TCCTACAGCTGGATGAAAATTCAATT 59.335 34.615 19.93 0.00 41.13 2.32
1921 2019 6.189859 TCCTACAGCTGGATGAAAATTCAAT 58.810 36.000 19.93 0.00 41.13 2.57
1924 2022 6.319658 TGATTCCTACAGCTGGATGAAAATTC 59.680 38.462 19.04 13.15 33.09 2.17
1926 2024 5.759059 TGATTCCTACAGCTGGATGAAAAT 58.241 37.500 19.04 5.37 33.09 1.82
1981 2092 2.961526 TTAGTGCCCTCGTCATCTTC 57.038 50.000 0.00 0.00 0.00 2.87
1984 2095 2.614057 CCAATTTAGTGCCCTCGTCATC 59.386 50.000 0.00 0.00 0.00 2.92
2072 2184 1.602311 CAGCTACATGGGCAAGGATC 58.398 55.000 13.84 0.00 0.00 3.36
2083 2195 2.639839 CCTATAACCAGCCCAGCTACAT 59.360 50.000 0.00 0.00 36.40 2.29
2096 2208 1.594397 GCGCCAACGTAACCTATAACC 59.406 52.381 0.00 0.00 42.83 2.85
2101 2213 2.650196 ACGCGCCAACGTAACCTA 59.350 55.556 5.73 0.00 46.19 3.08
2109 2225 2.325082 AACTGGATGACGCGCCAAC 61.325 57.895 5.73 0.00 32.95 3.77
2115 2231 0.798776 CAACTCCAACTGGATGACGC 59.201 55.000 0.00 0.00 44.46 5.19
2160 2334 4.035675 GGCTAACATAAATCAGTGCAGTCC 59.964 45.833 0.00 0.00 0.00 3.85
2167 2348 7.338800 CCTCATTTGGCTAACATAAATCAGT 57.661 36.000 0.00 0.00 0.00 3.41
2241 2459 1.597663 GACAAACGCTGCTACTGTGTT 59.402 47.619 0.00 0.00 37.56 3.32
2245 2463 4.921547 TCTATAGACAAACGCTGCTACTG 58.078 43.478 0.00 0.00 0.00 2.74
2387 2609 5.418840 AGTGCCCACAGAATAATTAGTTTGG 59.581 40.000 8.14 5.58 0.00 3.28
2396 2618 0.698238 AGCCAGTGCCCACAGAATAA 59.302 50.000 0.82 0.00 38.69 1.40
2423 2645 1.209504 GCTAGAGGCCCAATACACACA 59.790 52.381 0.00 0.00 34.27 3.72
2458 2680 3.877450 GGGGCTGGGATGCATCGA 61.877 66.667 20.15 8.60 34.04 3.59
2484 2706 2.597455 ACTGAAATTGTTCACAGGGGG 58.403 47.619 0.00 0.00 38.88 5.40
2486 2708 5.707298 AGATGTACTGAAATTGTTCACAGGG 59.293 40.000 0.00 0.00 38.88 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.