Multiple sequence alignment - TraesCS6D01G039200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G039200 chr6D 100.000 4668 0 0 1 4668 16197640 16192973 0.000000e+00 8621.0
1 TraesCS6D01G039200 chr6D 100.000 2781 0 0 5059 7839 16192582 16189802 0.000000e+00 5136.0
2 TraesCS6D01G039200 chr6D 85.496 786 87 14 6329 7097 16380584 16381359 0.000000e+00 795.0
3 TraesCS6D01G039200 chr6D 94.516 310 17 0 6623 6932 16232612 16232303 5.500000e-131 479.0
4 TraesCS6D01G039200 chr6D 94.872 39 1 1 611 649 141690003 141690040 8.490000e-05 60.2
5 TraesCS6D01G039200 chr3D 99.068 1932 15 3 2723 4654 587653994 587655922 0.000000e+00 3465.0
6 TraesCS6D01G039200 chr3D 85.714 147 5 6 5088 5219 587655954 587656099 2.950000e-29 141.0
7 TraesCS6D01G039200 chr3D 98.246 57 1 0 2669 2725 587653828 587653884 5.010000e-17 100.0
8 TraesCS6D01G039200 chr5D 92.646 2026 78 34 2667 4662 564792404 564794388 0.000000e+00 2850.0
9 TraesCS6D01G039200 chr5D 89.527 592 45 5 3982 4570 369143719 369143142 0.000000e+00 734.0
10 TraesCS6D01G039200 chr5D 93.750 80 5 0 5142 5221 249165024 249164945 3.840000e-23 121.0
11 TraesCS6D01G039200 chr5D 90.909 77 7 0 5059 5135 564794496 564794572 3.870000e-18 104.0
12 TraesCS6D01G039200 chr6A 88.566 2274 170 48 422 2658 16461243 16459023 0.000000e+00 2676.0
13 TraesCS6D01G039200 chr6A 87.957 2051 125 56 5548 7538 16458455 16456467 0.000000e+00 2307.0
14 TraesCS6D01G039200 chr6A 92.903 310 22 0 6623 6932 16467123 16466814 1.200000e-122 451.0
15 TraesCS6D01G039200 chr6A 85.496 131 11 4 5304 5430 16458946 16458820 6.380000e-26 130.0
16 TraesCS6D01G039200 chr6A 93.617 47 3 0 5228 5274 16458998 16458952 3.920000e-08 71.3
17 TraesCS6D01G039200 chr1A 96.503 1630 31 13 2741 4352 575457514 575459135 0.000000e+00 2671.0
18 TraesCS6D01G039200 chr1A 82.326 1737 235 38 922 2616 392786749 392785043 0.000000e+00 1441.0
19 TraesCS6D01G039200 chr1A 95.513 312 14 0 4349 4660 575459407 575459718 4.220000e-137 499.0
20 TraesCS6D01G039200 chr1A 82.745 510 64 10 6348 6838 392783213 392782709 4.340000e-117 433.0
21 TraesCS6D01G039200 chr1A 97.531 81 2 0 2670 2750 575454686 575454766 1.060000e-28 139.0
22 TraesCS6D01G039200 chr2B 89.734 1802 114 20 895 2670 46602161 46600405 0.000000e+00 2237.0
23 TraesCS6D01G039200 chr2B 89.240 1552 94 27 5384 6910 46596961 46595458 0.000000e+00 1873.0
24 TraesCS6D01G039200 chr2B 85.496 786 73 21 6904 7653 46595369 46594589 0.000000e+00 782.0
25 TraesCS6D01G039200 chr2B 89.243 251 26 1 83 332 46602925 46602675 5.910000e-81 313.0
26 TraesCS6D01G039200 chr2B 100.000 29 0 0 7569 7597 46594734 46594706 4.000000e-03 54.7
27 TraesCS6D01G039200 chr6B 90.097 1757 116 24 895 2633 28002470 28004186 0.000000e+00 2228.0
28 TraesCS6D01G039200 chr6B 89.097 1761 105 29 5540 7278 28004885 28006580 0.000000e+00 2108.0
29 TraesCS6D01G039200 chr6B 89.681 1628 112 27 6070 7653 27942361 27940746 0.000000e+00 2025.0
30 TraesCS6D01G039200 chr6B 92.446 1390 82 9 1283 2658 27944703 27943323 0.000000e+00 1964.0
31 TraesCS6D01G039200 chr6B 83.367 998 105 25 6332 7284 59301537 59300556 0.000000e+00 867.0
32 TraesCS6D01G039200 chr6B 85.832 847 64 16 5228 6040 27943288 27942464 0.000000e+00 848.0
33 TraesCS6D01G039200 chr6B 85.176 823 83 17 6332 7131 28724981 28724175 0.000000e+00 808.0
34 TraesCS6D01G039200 chr6B 88.364 593 58 2 1893 2485 27996698 27997279 0.000000e+00 702.0
35 TraesCS6D01G039200 chr6B 85.338 532 49 12 6332 6847 27998317 27998835 2.510000e-144 523.0
36 TraesCS6D01G039200 chr6B 87.719 399 36 10 7345 7733 28010332 28010727 3.340000e-123 453.0
37 TraesCS6D01G039200 chr6B 87.834 337 33 4 1 329 28000565 28000901 9.540000e-104 388.0
38 TraesCS6D01G039200 chr6B 83.728 338 23 7 5225 5542 28004230 28004555 2.770000e-74 291.0
39 TraesCS6D01G039200 chr6B 82.249 338 38 12 1276 1598 27995840 27996170 1.000000e-68 272.0
40 TraesCS6D01G039200 chr6B 83.099 284 35 10 817 1099 27945077 27944806 6.080000e-61 246.0
41 TraesCS6D01G039200 chr6B 85.345 116 13 2 1127 1238 27944815 27944700 4.970000e-22 117.0
42 TraesCS6D01G039200 chr1D 83.593 1731 221 34 922 2616 313216281 313214578 0.000000e+00 1565.0
43 TraesCS6D01G039200 chr1D 81.579 722 95 15 2800 3488 188346503 188347219 5.310000e-156 562.0
44 TraesCS6D01G039200 chr1B 83.314 1738 213 40 922 2616 423593221 423591518 0.000000e+00 1531.0
45 TraesCS6D01G039200 chr1B 94.161 805 37 7 2667 3467 12422280 12423078 0.000000e+00 1218.0
46 TraesCS6D01G039200 chr1B 91.954 348 9 3 3736 4065 12423095 12423441 3.310000e-128 470.0
47 TraesCS6D01G039200 chr1B 90.855 339 12 5 4059 4386 12423561 12423891 3.360000e-118 436.0
48 TraesCS6D01G039200 chrUn 100.000 406 0 0 4161 4566 478152042 478151637 0.000000e+00 750.0
49 TraesCS6D01G039200 chr5A 87.184 593 45 8 3982 4570 471295846 471296411 0.000000e+00 645.0
50 TraesCS6D01G039200 chr5A 79.861 864 102 31 2670 3488 421864704 421865540 4.110000e-157 566.0
51 TraesCS6D01G039200 chr5A 82.765 528 65 9 3545 4052 421865547 421866068 1.550000e-121 448.0
52 TraesCS6D01G039200 chr7B 80.278 862 116 31 2669 3488 749530650 749529801 1.130000e-167 601.0
53 TraesCS6D01G039200 chr7B 100.000 29 0 0 5192 5220 583929527 583929555 4.000000e-03 54.7
54 TraesCS6D01G039200 chr7B 100.000 28 0 0 611 638 523164167 523164194 1.400000e-02 52.8
55 TraesCS6D01G039200 chr3B 79.977 864 116 29 2670 3488 762974533 762975384 1.130000e-162 584.0
56 TraesCS6D01G039200 chr3B 89.831 59 3 2 5165 5221 805900470 805900413 1.090000e-08 73.1
57 TraesCS6D01G039200 chr2A 79.358 872 119 29 2670 3488 18547069 18547932 2.470000e-154 556.0
58 TraesCS6D01G039200 chr2A 79.405 874 108 37 2660 3488 266206181 266205335 1.150000e-152 551.0
59 TraesCS6D01G039200 chr2A 83.815 519 61 7 3554 4052 266205319 266204804 9.210000e-129 472.0
60 TraesCS6D01G039200 chr3A 82.798 529 57 16 3545 4052 737804268 737804783 7.220000e-120 442.0
61 TraesCS6D01G039200 chr5B 89.873 79 8 0 5143 5221 641161590 641161512 1.390000e-17 102.0
62 TraesCS6D01G039200 chr4A 90.323 62 2 3 5161 5220 616610522 616610581 2.350000e-10 78.7
63 TraesCS6D01G039200 chr7A 100.000 30 0 0 5192 5221 130019804 130019833 1.000000e-03 56.5
64 TraesCS6D01G039200 chr4B 100.000 29 0 0 5192 5220 47656773 47656801 4.000000e-03 54.7
65 TraesCS6D01G039200 chr4B 100.000 29 0 0 5192 5220 322657355 322657383 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G039200 chr6D 16189802 16197640 7838 True 6878.500000 8621 100.000000 1 7839 2 chr6D.!!$R2 7838
1 TraesCS6D01G039200 chr6D 16380584 16381359 775 False 795.000000 795 85.496000 6329 7097 1 chr6D.!!$F1 768
2 TraesCS6D01G039200 chr3D 587653828 587656099 2271 False 1235.333333 3465 94.342667 2669 5219 3 chr3D.!!$F1 2550
3 TraesCS6D01G039200 chr5D 564792404 564794572 2168 False 1477.000000 2850 91.777500 2667 5135 2 chr5D.!!$F1 2468
4 TraesCS6D01G039200 chr5D 369143142 369143719 577 True 734.000000 734 89.527000 3982 4570 1 chr5D.!!$R2 588
5 TraesCS6D01G039200 chr6A 16456467 16461243 4776 True 1296.075000 2676 88.909000 422 7538 4 chr6A.!!$R2 7116
6 TraesCS6D01G039200 chr1A 575454686 575459718 5032 False 1103.000000 2671 96.515667 2670 4660 3 chr1A.!!$F1 1990
7 TraesCS6D01G039200 chr1A 392782709 392786749 4040 True 937.000000 1441 82.535500 922 6838 2 chr1A.!!$R1 5916
8 TraesCS6D01G039200 chr2B 46594589 46602925 8336 True 1051.940000 2237 90.742600 83 7653 5 chr2B.!!$R1 7570
9 TraesCS6D01G039200 chr6B 27940746 27945077 4331 True 1040.000000 2025 87.280600 817 7653 5 chr6B.!!$R3 6836
10 TraesCS6D01G039200 chr6B 27995840 28010727 14887 False 870.625000 2228 86.803250 1 7733 8 chr6B.!!$F1 7732
11 TraesCS6D01G039200 chr6B 59300556 59301537 981 True 867.000000 867 83.367000 6332 7284 1 chr6B.!!$R2 952
12 TraesCS6D01G039200 chr6B 28724175 28724981 806 True 808.000000 808 85.176000 6332 7131 1 chr6B.!!$R1 799
13 TraesCS6D01G039200 chr1D 313214578 313216281 1703 True 1565.000000 1565 83.593000 922 2616 1 chr1D.!!$R1 1694
14 TraesCS6D01G039200 chr1D 188346503 188347219 716 False 562.000000 562 81.579000 2800 3488 1 chr1D.!!$F1 688
15 TraesCS6D01G039200 chr1B 423591518 423593221 1703 True 1531.000000 1531 83.314000 922 2616 1 chr1B.!!$R1 1694
16 TraesCS6D01G039200 chr1B 12422280 12423891 1611 False 708.000000 1218 92.323333 2667 4386 3 chr1B.!!$F1 1719
17 TraesCS6D01G039200 chr5A 471295846 471296411 565 False 645.000000 645 87.184000 3982 4570 1 chr5A.!!$F1 588
18 TraesCS6D01G039200 chr5A 421864704 421866068 1364 False 507.000000 566 81.313000 2670 4052 2 chr5A.!!$F2 1382
19 TraesCS6D01G039200 chr7B 749529801 749530650 849 True 601.000000 601 80.278000 2669 3488 1 chr7B.!!$R1 819
20 TraesCS6D01G039200 chr3B 762974533 762975384 851 False 584.000000 584 79.977000 2670 3488 1 chr3B.!!$F1 818
21 TraesCS6D01G039200 chr2A 18547069 18547932 863 False 556.000000 556 79.358000 2670 3488 1 chr2A.!!$F1 818
22 TraesCS6D01G039200 chr2A 266204804 266206181 1377 True 511.500000 551 81.610000 2660 4052 2 chr2A.!!$R1 1392
23 TraesCS6D01G039200 chr3A 737804268 737804783 515 False 442.000000 442 82.798000 3545 4052 1 chr3A.!!$F1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
800 6576 0.107214 TTATACAGCCCAGCACCAGC 60.107 55.000 0.00 0.0 42.56 4.85 F
1639 7526 0.251341 AGGTGAAGTGTGAATGGGCC 60.251 55.000 0.00 0.0 0.00 5.80 F
2384 8282 0.550914 ACCAGTGAGGAGTTTGGCAA 59.449 50.000 0.00 0.0 41.22 4.52 F
2414 8312 4.944619 TGCTATGGACTCTTGTAGATGG 57.055 45.455 0.00 0.0 0.00 3.51 F
2630 8535 5.069781 ACAGAGAATAGGACTCAATGGTAGC 59.930 44.000 0.00 0.0 36.91 3.58 F
4663 14055 2.747686 GTCACCGCCTCAGGGAAA 59.252 61.111 0.00 0.0 35.02 3.13 F
5199 14605 1.902508 TCGCCTCTGAGGATGTTTTCT 59.097 47.619 27.53 0.0 37.67 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 7914 0.323957 AGGGTTCTTTCTACCGGCAC 59.676 55.000 0.00 0.00 36.49 5.01 R
2621 8526 2.816087 GCTACCATGGATGCTACCATTG 59.184 50.000 21.47 10.92 47.00 2.82 R
4009 12985 6.726258 TTCTATTGCAGGTCATAATATGCG 57.274 37.500 0.00 0.00 41.58 4.73 R
4601 13993 3.655211 CCCCTTGCCACCTGCTCT 61.655 66.667 0.00 0.00 42.00 4.09 R
5071 14463 3.407967 CCTTGCCGGCCCTCCTTA 61.408 66.667 26.77 0.00 0.00 2.69 R
5724 18860 0.034616 GTGCAGCTCTGTCTTGGACT 59.965 55.000 0.00 0.00 33.15 3.85 R
6999 21129 0.394938 TCTTGCAACAGAGCCCGTTA 59.605 50.000 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 4756 4.980434 GCATATCTTGCCAACACATGATTC 59.020 41.667 0.00 0.00 46.15 2.52
31 4757 3.770263 ATCTTGCCAACACATGATTCG 57.230 42.857 0.00 0.00 32.24 3.34
34 4760 0.251121 TGCCAACACATGATTCGGGT 60.251 50.000 0.00 0.00 0.00 5.28
50 4776 4.223556 TCGGGTGCATAAATTTGAGGTA 57.776 40.909 0.00 0.00 0.00 3.08
51 4777 4.787551 TCGGGTGCATAAATTTGAGGTAT 58.212 39.130 0.00 0.00 0.00 2.73
57 4783 6.751888 GGTGCATAAATTTGAGGTATGTGAAC 59.248 38.462 0.00 0.00 0.00 3.18
64 4790 8.986477 AAATTTGAGGTATGTGAACTAATTGC 57.014 30.769 0.00 0.00 0.00 3.56
66 4792 6.741992 TTGAGGTATGTGAACTAATTGCAG 57.258 37.500 0.00 0.00 0.00 4.41
67 4793 4.635765 TGAGGTATGTGAACTAATTGCAGC 59.364 41.667 0.00 0.00 0.00 5.25
70 4796 4.094294 GGTATGTGAACTAATTGCAGCGAA 59.906 41.667 0.00 0.00 0.00 4.70
80 4808 0.591170 TTGCAGCGAACTAAGTTGGC 59.409 50.000 0.00 0.00 45.19 4.52
81 4809 1.234615 TGCAGCGAACTAAGTTGGCC 61.235 55.000 0.00 0.00 45.80 5.36
118 4847 8.655651 TTTCATTTACAAAAGTAGGGCAAAAG 57.344 30.769 0.00 0.00 0.00 2.27
131 4860 5.226194 AGGGCAAAAGCATTAAATCAACA 57.774 34.783 0.00 0.00 0.00 3.33
137 4866 8.330302 GGCAAAAGCATTAAATCAACACATATC 58.670 33.333 0.00 0.00 0.00 1.63
166 4895 7.872881 TCGAGTTACTATAAATCCTAGCAGTG 58.127 38.462 0.00 0.00 0.00 3.66
234 4968 5.414454 TCAAAGAAATCGGAACTAATGTGGG 59.586 40.000 0.00 0.00 0.00 4.61
241 4975 2.355716 CGGAACTAATGTGGGGTGATGT 60.356 50.000 0.00 0.00 0.00 3.06
259 4993 4.722855 GCATGCAAACCGCCGCTT 62.723 61.111 14.21 0.00 41.33 4.68
263 4997 4.999939 GCAAACCGCCGCTTGGTG 63.000 66.667 0.36 0.00 40.35 4.17
271 5005 2.432628 CCGCTTGGTGGAGTCGAC 60.433 66.667 7.70 7.70 34.74 4.20
273 5007 3.112709 GCTTGGTGGAGTCGACGC 61.113 66.667 11.19 11.19 0.00 5.19
275 5009 1.079819 CTTGGTGGAGTCGACGCAT 60.080 57.895 21.01 0.00 0.00 4.73
279 5013 0.454600 GGTGGAGTCGACGCATCTTA 59.545 55.000 21.01 0.00 0.00 2.10
325 5059 1.469703 CAAGCGAATGATGCAAGGTGA 59.530 47.619 0.00 0.00 33.85 4.02
332 5066 0.251033 TGATGCAAGGTGAAGCTGCT 60.251 50.000 0.00 0.00 37.00 4.24
333 5067 0.886563 GATGCAAGGTGAAGCTGCTT 59.113 50.000 15.92 15.92 37.00 3.91
334 5068 2.086869 GATGCAAGGTGAAGCTGCTTA 58.913 47.619 15.95 1.24 37.00 3.09
335 5069 2.205022 TGCAAGGTGAAGCTGCTTAT 57.795 45.000 15.95 0.00 37.00 1.73
337 5071 2.229543 TGCAAGGTGAAGCTGCTTATTG 59.770 45.455 15.95 17.05 37.00 1.90
338 5072 2.489329 GCAAGGTGAAGCTGCTTATTGA 59.511 45.455 15.95 0.00 33.20 2.57
339 5073 3.129988 GCAAGGTGAAGCTGCTTATTGAT 59.870 43.478 15.95 0.00 33.20 2.57
340 5074 4.669318 CAAGGTGAAGCTGCTTATTGATG 58.331 43.478 15.95 8.50 0.00 3.07
351 5085 1.003116 CTTATTGATGCAGAGCGCCAC 60.003 52.381 2.29 0.00 41.33 5.01
352 5086 0.815213 TATTGATGCAGAGCGCCACC 60.815 55.000 2.29 0.00 41.33 4.61
374 5148 2.047061 TCACACTACACTGCCCTCTTT 58.953 47.619 0.00 0.00 0.00 2.52
375 5149 2.438021 TCACACTACACTGCCCTCTTTT 59.562 45.455 0.00 0.00 0.00 2.27
390 5164 0.893727 CTTTTTGCAGTAGGGCGGGT 60.894 55.000 0.00 0.00 36.28 5.28
415 5189 3.194861 TCATATACAACACCTTGAGCGC 58.805 45.455 0.00 0.00 0.00 5.92
420 5194 3.165160 AACACCTTGAGCGCCGACT 62.165 57.895 2.29 0.00 0.00 4.18
425 5199 2.280797 TTGAGCGCCGACTTGCTT 60.281 55.556 2.29 0.00 42.60 3.91
427 5205 4.451652 GAGCGCCGACTTGCTTGC 62.452 66.667 2.29 0.00 42.60 4.01
499 5277 2.898738 CCCTCATGTGCTCGCTCT 59.101 61.111 0.00 0.00 0.00 4.09
500 5278 1.220206 CCCTCATGTGCTCGCTCTT 59.780 57.895 0.00 0.00 0.00 2.85
501 5279 0.392193 CCCTCATGTGCTCGCTCTTT 60.392 55.000 0.00 0.00 0.00 2.52
502 5280 1.446907 CCTCATGTGCTCGCTCTTTT 58.553 50.000 0.00 0.00 0.00 2.27
573 5352 8.573035 TGTCGGCTTTCTCTGTTAATTTTAAAT 58.427 29.630 0.00 0.00 0.00 1.40
615 5412 5.176407 TGTTCACGGGTTTCAATAAAGTG 57.824 39.130 0.00 0.00 0.00 3.16
687 5493 6.035542 ACTGTTGGCAAGTTTTTAAAATGTCG 59.964 34.615 0.00 0.00 0.00 4.35
759 6535 6.510746 AAGTTGCGTATTTGAAAAAGCTTC 57.489 33.333 0.00 0.00 0.00 3.86
793 6569 8.034215 TGAATTTTGAAACATTATACAGCCCAG 58.966 33.333 0.00 0.00 0.00 4.45
794 6570 4.981806 TTGAAACATTATACAGCCCAGC 57.018 40.909 0.00 0.00 0.00 4.85
796 6572 3.694072 TGAAACATTATACAGCCCAGCAC 59.306 43.478 0.00 0.00 0.00 4.40
797 6573 2.348411 ACATTATACAGCCCAGCACC 57.652 50.000 0.00 0.00 0.00 5.01
799 6575 2.224606 CATTATACAGCCCAGCACCAG 58.775 52.381 0.00 0.00 0.00 4.00
800 6576 0.107214 TTATACAGCCCAGCACCAGC 60.107 55.000 0.00 0.00 42.56 4.85
801 6577 1.271127 TATACAGCCCAGCACCAGCA 61.271 55.000 0.00 0.00 45.49 4.41
802 6578 1.929860 ATACAGCCCAGCACCAGCAT 61.930 55.000 0.00 0.00 45.49 3.79
803 6579 2.141011 TACAGCCCAGCACCAGCATT 62.141 55.000 0.00 0.00 45.49 3.56
804 6580 2.118951 AGCCCAGCACCAGCATTT 59.881 55.556 0.00 0.00 45.49 2.32
805 6581 0.966875 CAGCCCAGCACCAGCATTTA 60.967 55.000 0.00 0.00 45.49 1.40
806 6582 0.682209 AGCCCAGCACCAGCATTTAG 60.682 55.000 0.00 0.00 45.49 1.85
807 6583 1.811860 CCCAGCACCAGCATTTAGC 59.188 57.895 0.00 0.00 45.49 3.09
835 6611 1.656652 CACTCCAGAACATAAGCCCG 58.343 55.000 0.00 0.00 0.00 6.13
880 6656 3.370846 CCAGCCCATCTAACATCAACAGA 60.371 47.826 0.00 0.00 0.00 3.41
1150 6973 1.586154 GCAACATGTCCTTCCACCGG 61.586 60.000 0.00 0.00 0.00 5.28
1183 7021 3.735097 AAAACCCCGGCGCCCTAT 61.735 61.111 23.46 0.05 0.00 2.57
1203 7044 2.944954 AACCCCTTACCCCAGGCC 60.945 66.667 0.00 0.00 31.69 5.19
1486 7358 3.461773 CCGAGGACGAGGCCACAT 61.462 66.667 5.01 0.00 42.66 3.21
1487 7359 2.202797 CGAGGACGAGGCCACATG 60.203 66.667 5.01 0.00 42.66 3.21
1516 7394 2.032681 GTTCTGCCAGCGGAGGTT 59.967 61.111 0.77 0.00 33.74 3.50
1535 7413 6.332735 AGGTTTCAATTTTAAGCTCCTGTC 57.667 37.500 0.00 0.00 0.00 3.51
1539 7417 4.985538 TCAATTTTAAGCTCCTGTCCAGT 58.014 39.130 0.00 0.00 0.00 4.00
1540 7418 5.385198 TCAATTTTAAGCTCCTGTCCAGTT 58.615 37.500 0.00 0.00 0.00 3.16
1541 7419 6.539173 TCAATTTTAAGCTCCTGTCCAGTTA 58.461 36.000 0.00 0.00 0.00 2.24
1559 7437 8.956426 GTCCAGTTATTATCACCATTGAAAGAA 58.044 33.333 0.00 0.00 34.61 2.52
1576 7454 6.486248 TGAAAGAACAGAACAAACTTGATCG 58.514 36.000 0.00 0.00 35.42 3.69
1639 7526 0.251341 AGGTGAAGTGTGAATGGGCC 60.251 55.000 0.00 0.00 0.00 5.80
1646 7533 1.173043 GTGTGAATGGGCCGATGAAA 58.827 50.000 0.00 0.00 0.00 2.69
1654 7541 3.202706 GCCGATGAAACCTCGCCC 61.203 66.667 0.00 0.00 34.84 6.13
1735 7622 4.299155 CACTGTACTCGACATTGTCTGTT 58.701 43.478 14.54 1.43 38.54 3.16
2027 7914 2.926200 CGCTACTTGGATGAGTTGTCTG 59.074 50.000 0.00 0.00 0.00 3.51
2126 8020 0.714180 TCCAGCTAGGGTCCCTACAA 59.286 55.000 14.22 0.00 38.24 2.41
2147 8041 5.190925 ACAAGGGTCTGTGTAATGGCTATAA 59.809 40.000 0.00 0.00 0.00 0.98
2165 8059 8.750298 TGGCTATAATAATAGTGGCTCTAAGAC 58.250 37.037 0.00 0.00 37.90 3.01
2241 8135 5.940595 AGTCACTCTCGTAAGTCATGTAAC 58.059 41.667 0.00 0.00 39.48 2.50
2273 8167 7.094463 CCATAAATATGATGGGCTGAACTTCTC 60.094 40.741 8.48 0.00 40.29 2.87
2309 8207 0.606130 TGCGAGGCAGCAAGAAATCA 60.606 50.000 5.20 0.00 45.06 2.57
2337 8235 3.236816 GTCTGACCGTGATGCAAATTTG 58.763 45.455 14.03 14.03 0.00 2.32
2347 8245 4.624024 GTGATGCAAATTTGTCACCATCTG 59.376 41.667 24.49 1.47 35.98 2.90
2384 8282 0.550914 ACCAGTGAGGAGTTTGGCAA 59.449 50.000 0.00 0.00 41.22 4.52
2414 8312 4.944619 TGCTATGGACTCTTGTAGATGG 57.055 45.455 0.00 0.00 0.00 3.51
2461 8361 5.207110 TGGTAATTGTTTGACCATTGGTG 57.793 39.130 14.44 0.00 38.34 4.17
2620 8525 7.728083 AGCTATGTCATAACAGAGAATAGGACT 59.272 37.037 0.00 0.00 45.62 3.85
2621 8526 8.026607 GCTATGTCATAACAGAGAATAGGACTC 58.973 40.741 0.00 0.00 45.62 3.36
2629 8534 6.723298 ACAGAGAATAGGACTCAATGGTAG 57.277 41.667 0.00 0.00 36.91 3.18
2630 8535 5.069781 ACAGAGAATAGGACTCAATGGTAGC 59.930 44.000 0.00 0.00 36.91 3.58
2734 8822 6.997239 AGCCATGTCATGTATATGCAATAG 57.003 37.500 11.84 0.00 34.21 1.73
4009 12985 6.925165 AGAACATGAATTTGAATTGTGTGGAC 59.075 34.615 0.00 0.00 29.56 4.02
4662 14054 3.691342 CGTCACCGCCTCAGGGAA 61.691 66.667 0.00 0.00 35.02 3.97
4663 14055 2.747686 GTCACCGCCTCAGGGAAA 59.252 61.111 0.00 0.00 35.02 3.13
5199 14605 1.902508 TCGCCTCTGAGGATGTTTTCT 59.097 47.619 27.53 0.00 37.67 2.52
5203 14609 3.823304 GCCTCTGAGGATGTTTTCTTGTT 59.177 43.478 27.53 0.00 37.67 2.83
5204 14610 4.279420 GCCTCTGAGGATGTTTTCTTGTTT 59.721 41.667 27.53 0.00 37.67 2.83
5206 14612 6.016276 GCCTCTGAGGATGTTTTCTTGTTTAA 60.016 38.462 27.53 0.00 37.67 1.52
5208 14614 9.231297 CCTCTGAGGATGTTTTCTTGTTTAATA 57.769 33.333 19.13 0.00 37.67 0.98
5210 14616 9.793259 TCTGAGGATGTTTTCTTGTTTAATAGT 57.207 29.630 0.00 0.00 0.00 2.12
5265 14676 9.764363 CACTAGTCTATCTTGCAATGGTAATTA 57.236 33.333 0.00 0.00 0.00 1.40
5269 14680 9.851686 AGTCTATCTTGCAATGGTAATTATCAA 57.148 29.630 1.78 0.00 0.00 2.57
5294 14705 4.342359 ACCGAGGTAGGATATGTATGGAC 58.658 47.826 0.00 0.00 34.73 4.02
5558 18691 6.583806 GCAGGATTACAGAAATCAACAAACAG 59.416 38.462 0.65 0.00 45.05 3.16
5719 18855 6.149308 GGGATCCCATGTTTCAAAAATTCAAC 59.851 38.462 26.95 0.00 35.81 3.18
5720 18856 6.149308 GGATCCCATGTTTCAAAAATTCAACC 59.851 38.462 0.00 0.00 0.00 3.77
5721 18857 5.994250 TCCCATGTTTCAAAAATTCAACCA 58.006 33.333 0.00 0.00 0.00 3.67
5722 18858 6.418101 TCCCATGTTTCAAAAATTCAACCAA 58.582 32.000 0.00 0.00 0.00 3.67
5723 18859 6.541641 TCCCATGTTTCAAAAATTCAACCAAG 59.458 34.615 0.00 0.00 0.00 3.61
5724 18860 6.541641 CCCATGTTTCAAAAATTCAACCAAGA 59.458 34.615 0.00 0.00 0.00 3.02
5725 18861 7.254863 CCCATGTTTCAAAAATTCAACCAAGAG 60.255 37.037 0.00 0.00 0.00 2.85
5726 18862 7.280652 CCATGTTTCAAAAATTCAACCAAGAGT 59.719 33.333 0.00 0.00 0.00 3.24
5779 18915 2.563620 TGTACGGATGGTGCTCAGTAAA 59.436 45.455 0.00 0.00 29.57 2.01
5801 18940 1.004044 CCCCTGTGAGAACAGAGCATT 59.996 52.381 7.43 0.00 39.99 3.56
5903 19051 6.721668 GGATGCCCCTTCTATTAAATAAAGCT 59.278 38.462 0.00 0.00 0.00 3.74
5905 19053 5.763204 TGCCCCTTCTATTAAATAAAGCTCG 59.237 40.000 0.00 0.00 0.00 5.03
5922 19070 2.124529 GCAAGGGCTAGTCCTGGC 60.125 66.667 26.83 26.83 45.58 4.85
5925 19073 1.081092 AAGGGCTAGTCCTGGCTGA 59.919 57.895 18.80 0.00 37.20 4.26
5943 19091 6.662755 TGGCTGATCTGGTTTGTTATTATCT 58.337 36.000 1.46 0.00 0.00 1.98
5946 19094 8.560374 GGCTGATCTGGTTTGTTATTATCTTAC 58.440 37.037 1.46 0.00 0.00 2.34
6062 19298 7.330262 TCACAGTGATATGTTTGCTCAGATTA 58.670 34.615 0.00 0.00 0.00 1.75
6063 19299 7.989170 TCACAGTGATATGTTTGCTCAGATTAT 59.011 33.333 0.00 0.00 0.00 1.28
6064 19300 9.264719 CACAGTGATATGTTTGCTCAGATTATA 57.735 33.333 0.00 0.00 0.00 0.98
6069 19305 9.710900 TGATATGTTTGCTCAGATTATAATCGT 57.289 29.630 17.69 5.87 40.35 3.73
6073 19309 8.039603 TGTTTGCTCAGATTATAATCGTTTGT 57.960 30.769 17.69 0.00 40.35 2.83
6074 19310 7.962373 TGTTTGCTCAGATTATAATCGTTTGTG 59.038 33.333 17.69 12.92 40.35 3.33
6075 19311 7.609760 TTGCTCAGATTATAATCGTTTGTGT 57.390 32.000 17.69 0.00 40.35 3.72
6076 19312 7.234187 TGCTCAGATTATAATCGTTTGTGTC 57.766 36.000 17.69 9.63 40.35 3.67
6098 19336 4.471025 TCTTGAGTGAATGCATTCTAGGGA 59.529 41.667 33.23 21.64 35.45 4.20
6103 19341 4.051922 GTGAATGCATTCTAGGGAGTACG 58.948 47.826 33.23 0.00 37.67 3.67
6150 19392 8.784043 AGTAGTGGTACAAAATTGATGAAGTTC 58.216 33.333 0.00 0.00 44.16 3.01
6442 20421 4.481930 TTTGATGTCTAAACCTGTTGCG 57.518 40.909 0.00 0.00 0.00 4.85
6454 20433 2.224426 ACCTGTTGCGTTGTAGGATGAA 60.224 45.455 0.00 0.00 34.42 2.57
6465 20444 6.861055 GCGTTGTAGGATGAAAATTCAAAAGA 59.139 34.615 0.00 0.00 41.13 2.52
6600 20603 5.437060 AGACCACGGATTTTGTTATATGCT 58.563 37.500 0.00 0.00 0.00 3.79
6611 20614 4.502105 TGTTATATGCTGCCAAGGAAGA 57.498 40.909 0.00 0.00 0.00 2.87
6703 20706 5.066893 ACATGCTGATTATTACCTGTTGCTG 59.933 40.000 0.00 0.00 0.00 4.41
6886 20905 5.266788 TCAGGCTGAAGATTTTGATGGATT 58.733 37.500 16.28 0.00 0.00 3.01
6887 20906 5.126545 TCAGGCTGAAGATTTTGATGGATTG 59.873 40.000 16.28 0.00 0.00 2.67
6888 20907 4.117685 GGCTGAAGATTTTGATGGATTGC 58.882 43.478 0.00 0.00 0.00 3.56
6889 20908 4.117685 GCTGAAGATTTTGATGGATTGCC 58.882 43.478 0.00 0.00 0.00 4.52
6999 21129 2.774234 ACCAGACGATGAGGATCCAAAT 59.226 45.455 15.82 6.71 0.00 2.32
7005 21135 3.067106 CGATGAGGATCCAAATAACGGG 58.933 50.000 15.82 0.00 0.00 5.28
7037 21168 3.062763 AGATCTTGCTGACAAAGTGACG 58.937 45.455 0.00 0.00 34.74 4.35
7045 21176 3.194861 CTGACAAAGTGACGAGGAACAA 58.805 45.455 0.00 0.00 0.00 2.83
7050 21181 6.316640 TGACAAAGTGACGAGGAACAATAAAA 59.683 34.615 0.00 0.00 0.00 1.52
7060 21191 6.530534 ACGAGGAACAATAAAACTGTATCTCG 59.469 38.462 18.00 18.00 45.11 4.04
7394 25234 9.749490 CATGAAATATTTCTTCATTGTTGTTGC 57.251 29.630 24.77 0.00 40.69 4.17
7447 25288 9.729281 ATTGGTCAAATTCAAAGCAAAATATCT 57.271 25.926 4.19 0.00 34.47 1.98
7468 25309 2.094675 ACTCTTGCGGATCAATTTGGG 58.905 47.619 0.00 0.00 33.57 4.12
7604 25486 9.821240 TGATATATGCTAAAATGTTACCCCATT 57.179 29.630 0.00 0.00 36.62 3.16
7616 25498 4.884744 TGTTACCCCATTATTGAATCCACG 59.115 41.667 0.00 0.00 0.00 4.94
7650 25534 6.830114 TGAAACACACGAAAAAGTTGTTTT 57.170 29.167 0.00 0.00 36.49 2.43
7653 25544 4.872664 ACACACGAAAAAGTTGTTTTCCA 58.127 34.783 6.09 0.00 34.64 3.53
7656 25547 3.001168 CACGAAAAAGTTGTTTTCCAGCG 60.001 43.478 6.09 0.00 34.64 5.18
7671 25562 0.815615 CAGCGATTAGGGTGAAGGGC 60.816 60.000 0.00 0.00 37.61 5.19
7673 25564 0.815615 GCGATTAGGGTGAAGGGCTG 60.816 60.000 0.00 0.00 0.00 4.85
7712 25603 1.491668 ATGTATCTGGTGCACCGGTA 58.508 50.000 37.57 26.84 43.01 4.02
7718 25609 0.319083 CTGGTGCACCGGTACTTGTA 59.681 55.000 32.99 11.34 39.43 2.41
7726 25617 1.821136 ACCGGTACTTGTAGTGCTACC 59.179 52.381 4.49 0.00 35.26 3.18
7733 25624 0.611200 TTGTAGTGCTACCGGTGCAT 59.389 50.000 26.82 19.47 42.69 3.96
7734 25625 0.611200 TGTAGTGCTACCGGTGCATT 59.389 50.000 26.82 24.82 42.69 3.56
7735 25626 1.006832 GTAGTGCTACCGGTGCATTG 58.993 55.000 26.82 10.79 42.69 2.82
7736 25627 0.107897 TAGTGCTACCGGTGCATTGG 60.108 55.000 26.82 5.69 42.69 3.16
7737 25628 1.376683 GTGCTACCGGTGCATTGGA 60.377 57.895 26.82 8.70 42.69 3.53
7738 25629 1.376683 TGCTACCGGTGCATTGGAC 60.377 57.895 19.93 0.00 35.31 4.02
7739 25630 2.461110 GCTACCGGTGCATTGGACG 61.461 63.158 19.93 2.92 0.00 4.79
7740 25631 2.435234 TACCGGTGCATTGGACGC 60.435 61.111 19.93 0.00 0.00 5.19
7741 25632 3.961838 TACCGGTGCATTGGACGCC 62.962 63.158 19.93 0.00 0.00 5.68
7743 25634 3.133464 CGGTGCATTGGACGCCAT 61.133 61.111 2.01 0.00 37.56 4.40
7744 25635 1.817520 CGGTGCATTGGACGCCATA 60.818 57.895 2.01 0.00 37.56 2.74
7745 25636 1.165907 CGGTGCATTGGACGCCATAT 61.166 55.000 2.01 0.00 37.56 1.78
7746 25637 0.593128 GGTGCATTGGACGCCATATC 59.407 55.000 2.01 0.00 37.64 1.63
7747 25638 0.235665 GTGCATTGGACGCCATATCG 59.764 55.000 0.00 0.00 31.53 2.92
7748 25639 1.207593 GCATTGGACGCCATATCGC 59.792 57.895 0.00 0.00 31.53 4.58
7749 25640 1.506309 GCATTGGACGCCATATCGCA 61.506 55.000 0.00 0.00 31.53 5.10
7750 25641 1.159285 CATTGGACGCCATATCGCAT 58.841 50.000 0.00 0.00 31.53 4.73
7751 25642 1.536766 CATTGGACGCCATATCGCATT 59.463 47.619 0.00 0.00 31.53 3.56
7752 25643 0.943673 TTGGACGCCATATCGCATTG 59.056 50.000 0.00 0.00 31.53 2.82
7753 25644 0.179059 TGGACGCCATATCGCATTGT 60.179 50.000 0.00 0.00 0.00 2.71
7754 25645 1.069358 TGGACGCCATATCGCATTGTA 59.931 47.619 0.00 0.00 0.00 2.41
7755 25646 2.139917 GGACGCCATATCGCATTGTAA 58.860 47.619 0.00 0.00 0.00 2.41
7756 25647 2.546368 GGACGCCATATCGCATTGTAAA 59.454 45.455 0.00 0.00 0.00 2.01
7757 25648 3.002862 GGACGCCATATCGCATTGTAAAA 59.997 43.478 0.00 0.00 0.00 1.52
7758 25649 4.320202 GGACGCCATATCGCATTGTAAAAT 60.320 41.667 0.00 0.00 0.00 1.82
7759 25650 4.536065 ACGCCATATCGCATTGTAAAATG 58.464 39.130 0.81 0.81 0.00 2.32
7760 25651 4.036262 ACGCCATATCGCATTGTAAAATGT 59.964 37.500 7.46 0.00 32.87 2.71
7761 25652 4.975502 CGCCATATCGCATTGTAAAATGTT 59.024 37.500 7.46 0.00 32.87 2.71
7762 25653 5.458452 CGCCATATCGCATTGTAAAATGTTT 59.542 36.000 7.46 0.00 32.87 2.83
7763 25654 6.344936 CGCCATATCGCATTGTAAAATGTTTC 60.345 38.462 7.46 0.00 32.87 2.78
7764 25655 6.475076 GCCATATCGCATTGTAAAATGTTTCA 59.525 34.615 7.46 0.00 32.87 2.69
7765 25656 7.009999 GCCATATCGCATTGTAAAATGTTTCAA 59.990 33.333 7.46 0.00 32.87 2.69
7766 25657 8.867935 CCATATCGCATTGTAAAATGTTTCAAA 58.132 29.630 7.46 0.00 29.21 2.69
7792 25683 9.468532 AAAAATCTTGAAAAAGTCTAGCACATC 57.531 29.630 0.00 0.00 0.00 3.06
7793 25684 5.845985 TCTTGAAAAAGTCTAGCACATCG 57.154 39.130 0.00 0.00 0.00 3.84
7794 25685 5.538118 TCTTGAAAAAGTCTAGCACATCGA 58.462 37.500 0.00 0.00 0.00 3.59
7795 25686 5.405571 TCTTGAAAAAGTCTAGCACATCGAC 59.594 40.000 0.00 0.00 0.00 4.20
7796 25687 4.627058 TGAAAAAGTCTAGCACATCGACA 58.373 39.130 0.00 0.00 0.00 4.35
7797 25688 4.447724 TGAAAAAGTCTAGCACATCGACAC 59.552 41.667 0.00 0.00 0.00 3.67
7798 25689 3.660501 AAAGTCTAGCACATCGACACA 57.339 42.857 0.00 0.00 0.00 3.72
7799 25690 3.660501 AAGTCTAGCACATCGACACAA 57.339 42.857 0.00 0.00 0.00 3.33
7800 25691 2.947852 AGTCTAGCACATCGACACAAC 58.052 47.619 0.00 0.00 0.00 3.32
7801 25692 2.296190 AGTCTAGCACATCGACACAACA 59.704 45.455 0.00 0.00 0.00 3.33
7802 25693 3.056536 AGTCTAGCACATCGACACAACAT 60.057 43.478 0.00 0.00 0.00 2.71
7803 25694 3.679980 GTCTAGCACATCGACACAACATT 59.320 43.478 0.00 0.00 0.00 2.71
7804 25695 4.862574 GTCTAGCACATCGACACAACATTA 59.137 41.667 0.00 0.00 0.00 1.90
7805 25696 5.347635 GTCTAGCACATCGACACAACATTAA 59.652 40.000 0.00 0.00 0.00 1.40
7806 25697 5.929415 TCTAGCACATCGACACAACATTAAA 59.071 36.000 0.00 0.00 0.00 1.52
7807 25698 5.034554 AGCACATCGACACAACATTAAAG 57.965 39.130 0.00 0.00 0.00 1.85
7808 25699 4.515191 AGCACATCGACACAACATTAAAGT 59.485 37.500 0.00 0.00 0.00 2.66
7809 25700 5.699001 AGCACATCGACACAACATTAAAGTA 59.301 36.000 0.00 0.00 0.00 2.24
7810 25701 6.371548 AGCACATCGACACAACATTAAAGTAT 59.628 34.615 0.00 0.00 0.00 2.12
7811 25702 6.465781 GCACATCGACACAACATTAAAGTATG 59.534 38.462 0.00 0.00 0.00 2.39
7812 25703 7.518161 CACATCGACACAACATTAAAGTATGT 58.482 34.615 0.00 1.50 40.37 2.29
7813 25704 8.015087 CACATCGACACAACATTAAAGTATGTT 58.985 33.333 0.00 0.00 40.76 2.71
7814 25705 8.015087 ACATCGACACAACATTAAAGTATGTTG 58.985 33.333 21.47 21.47 40.76 3.33
7815 25706 7.485418 TCGACACAACATTAAAGTATGTTGT 57.515 32.000 22.51 22.51 40.76 3.32
7816 25707 7.921787 TCGACACAACATTAAAGTATGTTGTT 58.078 30.769 24.54 17.98 40.76 2.83
7817 25708 9.043079 TCGACACAACATTAAAGTATGTTGTTA 57.957 29.630 24.54 12.74 40.76 2.41
7818 25709 9.098746 CGACACAACATTAAAGTATGTTGTTAC 57.901 33.333 24.54 20.10 40.76 2.50
7819 25710 9.938670 GACACAACATTAAAGTATGTTGTTACA 57.061 29.630 24.54 0.00 40.76 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 4749 5.590145 TCAAATTTATGCACCCGAATCATG 58.410 37.500 0.00 0.00 0.00 3.07
30 4756 4.338118 ACATACCTCAAATTTATGCACCCG 59.662 41.667 0.00 0.00 0.00 5.28
31 4757 5.359576 TCACATACCTCAAATTTATGCACCC 59.640 40.000 0.00 0.00 0.00 4.61
34 4760 7.701539 AGTTCACATACCTCAAATTTATGCA 57.298 32.000 0.00 0.00 0.00 3.96
50 4776 3.753272 AGTTCGCTGCAATTAGTTCACAT 59.247 39.130 0.00 0.00 0.00 3.21
51 4777 3.138304 AGTTCGCTGCAATTAGTTCACA 58.862 40.909 0.00 0.00 0.00 3.58
57 4783 4.651994 CCAACTTAGTTCGCTGCAATTAG 58.348 43.478 0.00 0.00 0.00 1.73
63 4789 1.502190 GGCCAACTTAGTTCGCTGC 59.498 57.895 13.76 5.92 30.82 5.25
64 4790 0.949105 ACGGCCAACTTAGTTCGCTG 60.949 55.000 19.18 19.18 40.76 5.18
66 4792 0.589708 AAACGGCCAACTTAGTTCGC 59.410 50.000 6.16 6.16 0.00 4.70
67 4793 2.032426 ACAAAACGGCCAACTTAGTTCG 59.968 45.455 2.24 0.00 0.00 3.95
70 4796 2.645802 TCACAAAACGGCCAACTTAGT 58.354 42.857 2.24 0.00 0.00 2.24
80 4808 7.513190 TTGTAAATGAAAGTTCACAAAACGG 57.487 32.000 0.00 0.00 40.49 4.44
81 4809 9.459276 CTTTTGTAAATGAAAGTTCACAAAACG 57.541 29.630 12.57 8.18 40.49 3.60
110 4838 4.754114 TGTGTTGATTTAATGCTTTTGCCC 59.246 37.500 0.00 0.00 46.87 5.36
118 4847 9.449550 TCGAAATGATATGTGTTGATTTAATGC 57.550 29.630 0.00 0.00 0.00 3.56
137 4866 9.692749 TGCTAGGATTTATAGTAACTCGAAATG 57.307 33.333 0.00 0.00 0.00 2.32
142 4871 7.085116 CCACTGCTAGGATTTATAGTAACTCG 58.915 42.308 0.00 0.00 0.00 4.18
154 4883 4.164988 AGTTATTCTGCCACTGCTAGGATT 59.835 41.667 0.00 0.00 38.71 3.01
166 4895 5.643379 TCCAATGTTCAAGTTATTCTGCC 57.357 39.130 0.00 0.00 0.00 4.85
210 4940 5.414454 CCCACATTAGTTCCGATTTCTTTGA 59.586 40.000 0.00 0.00 0.00 2.69
230 4964 1.534336 TTGCATGCACATCACCCCAC 61.534 55.000 22.58 0.00 0.00 4.61
234 4968 0.733566 CGGTTTGCATGCACATCACC 60.734 55.000 22.58 21.19 0.00 4.02
259 4993 1.532604 AAGATGCGTCGACTCCACCA 61.533 55.000 14.70 3.32 0.00 4.17
263 4997 2.563471 ACTTAAGATGCGTCGACTCC 57.437 50.000 14.70 5.06 0.00 3.85
271 5005 0.855349 CAGCGGCTACTTAAGATGCG 59.145 55.000 10.09 9.78 33.47 4.73
343 5077 3.277211 TAGTGTGACGGTGGCGCTC 62.277 63.158 7.64 0.23 0.00 5.03
344 5078 3.299977 TAGTGTGACGGTGGCGCT 61.300 61.111 7.64 0.00 0.00 5.92
347 5081 0.944311 CAGTGTAGTGTGACGGTGGC 60.944 60.000 0.00 0.00 0.00 5.01
351 5085 1.374252 GGGCAGTGTAGTGTGACGG 60.374 63.158 0.00 0.00 0.00 4.79
352 5086 0.388649 GAGGGCAGTGTAGTGTGACG 60.389 60.000 0.00 0.00 0.00 4.35
353 5087 0.969894 AGAGGGCAGTGTAGTGTGAC 59.030 55.000 0.00 0.00 0.00 3.67
355 5089 2.550830 AAAGAGGGCAGTGTAGTGTG 57.449 50.000 0.00 0.00 0.00 3.82
374 5148 1.297364 GTACCCGCCCTACTGCAAA 59.703 57.895 0.00 0.00 0.00 3.68
375 5149 2.662070 GGTACCCGCCCTACTGCAA 61.662 63.158 0.00 0.00 0.00 4.08
390 5164 5.451381 CGCTCAAGGTGTTGTATATGAGGTA 60.451 44.000 0.00 0.00 35.87 3.08
405 5179 2.357517 CAAGTCGGCGCTCAAGGT 60.358 61.111 7.64 0.00 0.00 3.50
415 5189 0.097674 GCACTATGCAAGCAAGTCGG 59.902 55.000 0.00 0.00 44.26 4.79
459 5237 3.151022 AGGCGAGCCTACTGAGCC 61.151 66.667 15.98 0.00 46.14 4.70
462 5240 1.890894 GAACAGGCGAGCCTACTGA 59.109 57.895 17.13 0.00 46.28 3.41
465 5243 2.886124 GCGAACAGGCGAGCCTAC 60.886 66.667 17.13 10.14 46.28 3.18
512 5290 5.525378 CCTTGAGAGAACATACCAATAGCAC 59.475 44.000 0.00 0.00 0.00 4.40
544 5322 1.813513 AACAGAGAAAGCCGACATGG 58.186 50.000 0.00 0.00 42.50 3.66
545 5323 5.551760 AATTAACAGAGAAAGCCGACATG 57.448 39.130 0.00 0.00 0.00 3.21
546 5324 6.575162 AAAATTAACAGAGAAAGCCGACAT 57.425 33.333 0.00 0.00 0.00 3.06
547 5325 7.499321 TTAAAATTAACAGAGAAAGCCGACA 57.501 32.000 0.00 0.00 0.00 4.35
589 5386 7.223777 CACTTTATTGAAACCCGTGAACATTTT 59.776 33.333 0.00 0.00 0.00 1.82
599 5396 8.980143 ATTAATGAACACTTTATTGAAACCCG 57.020 30.769 0.00 0.00 0.00 5.28
652 5449 2.604174 GCCAACAGTTCGTGACCGG 61.604 63.158 0.00 0.00 33.95 5.28
653 5450 1.433053 TTGCCAACAGTTCGTGACCG 61.433 55.000 0.00 0.00 0.00 4.79
687 5493 5.820926 TTTGCAAACATACTTGAATTCGC 57.179 34.783 8.05 0.00 0.00 4.70
765 6541 9.382275 GGGCTGTATAATGTTTCAAAATTCATT 57.618 29.630 0.00 0.00 35.24 2.57
777 6553 2.025416 TGGTGCTGGGCTGTATAATGTT 60.025 45.455 0.00 0.00 0.00 2.71
793 6569 0.607620 TTTGGGCTAAATGCTGGTGC 59.392 50.000 0.00 0.00 42.39 5.01
794 6570 1.404583 GCTTTGGGCTAAATGCTGGTG 60.405 52.381 0.00 0.00 42.39 4.17
796 6572 0.176449 GGCTTTGGGCTAAATGCTGG 59.824 55.000 13.95 0.00 42.39 4.85
797 6573 0.176449 GGGCTTTGGGCTAAATGCTG 59.824 55.000 13.95 0.00 42.39 4.41
799 6575 0.108186 GTGGGCTTTGGGCTAAATGC 60.108 55.000 0.00 3.15 41.46 3.56
800 6576 1.478105 GAGTGGGCTTTGGGCTAAATG 59.522 52.381 0.00 0.00 41.46 2.32
801 6577 1.619704 GGAGTGGGCTTTGGGCTAAAT 60.620 52.381 0.00 0.00 41.46 1.40
802 6578 0.251608 GGAGTGGGCTTTGGGCTAAA 60.252 55.000 0.00 0.00 41.46 1.85
803 6579 1.382629 GGAGTGGGCTTTGGGCTAA 59.617 57.895 0.00 0.00 41.46 3.09
804 6580 1.850289 TGGAGTGGGCTTTGGGCTA 60.850 57.895 0.00 0.00 41.46 3.93
805 6581 3.185203 TGGAGTGGGCTTTGGGCT 61.185 61.111 0.00 0.00 41.46 5.19
806 6582 2.677875 CTGGAGTGGGCTTTGGGC 60.678 66.667 0.00 0.00 40.90 5.36
807 6583 0.895559 GTTCTGGAGTGGGCTTTGGG 60.896 60.000 0.00 0.00 0.00 4.12
808 6584 0.178992 TGTTCTGGAGTGGGCTTTGG 60.179 55.000 0.00 0.00 0.00 3.28
809 6585 1.915141 ATGTTCTGGAGTGGGCTTTG 58.085 50.000 0.00 0.00 0.00 2.77
810 6586 3.690460 CTTATGTTCTGGAGTGGGCTTT 58.310 45.455 0.00 0.00 0.00 3.51
811 6587 2.619074 GCTTATGTTCTGGAGTGGGCTT 60.619 50.000 0.00 0.00 0.00 4.35
812 6588 1.065126 GCTTATGTTCTGGAGTGGGCT 60.065 52.381 0.00 0.00 0.00 5.19
813 6589 1.383523 GCTTATGTTCTGGAGTGGGC 58.616 55.000 0.00 0.00 0.00 5.36
814 6590 1.408822 GGGCTTATGTTCTGGAGTGGG 60.409 57.143 0.00 0.00 0.00 4.61
815 6591 1.743772 CGGGCTTATGTTCTGGAGTGG 60.744 57.143 0.00 0.00 0.00 4.00
835 6611 3.072038 AGTTGGGTTAGTAGGGTTGACAC 59.928 47.826 0.00 0.00 0.00 3.67
880 6656 3.241530 TGCCTCAGAACTGCCGGT 61.242 61.111 1.90 0.00 0.00 5.28
1183 7021 1.542881 CCTGGGGTAAGGGGTTGGA 60.543 63.158 0.00 0.00 33.28 3.53
1205 7050 4.426313 CGAAGGGAGGGGTTGCCC 62.426 72.222 0.00 0.00 44.51 5.36
1206 7051 2.821679 CTTCGAAGGGAGGGGTTGCC 62.822 65.000 17.70 0.00 37.61 4.52
1209 7054 1.560146 GATTCTTCGAAGGGAGGGGTT 59.440 52.381 24.37 1.68 0.00 4.11
1210 7055 1.205055 GATTCTTCGAAGGGAGGGGT 58.795 55.000 24.37 3.80 0.00 4.95
1270 7130 4.527583 CAGCTCCTCTGGCTCGCC 62.528 72.222 0.00 0.00 39.15 5.54
1277 7137 2.422231 CGAGTCCCCAGCTCCTCTG 61.422 68.421 0.00 0.00 42.49 3.35
1516 7394 5.385198 ACTGGACAGGAGCTTAAAATTGAA 58.615 37.500 4.14 0.00 0.00 2.69
1535 7413 8.739039 TGTTCTTTCAATGGTGATAATAACTGG 58.261 33.333 0.00 0.00 32.48 4.00
1540 7418 9.513906 TGTTCTGTTCTTTCAATGGTGATAATA 57.486 29.630 0.00 0.00 32.48 0.98
1541 7419 8.408043 TGTTCTGTTCTTTCAATGGTGATAAT 57.592 30.769 0.00 0.00 32.48 1.28
1559 7437 6.650807 ACATATGTCGATCAAGTTTGTTCTGT 59.349 34.615 1.41 0.00 0.00 3.41
1576 7454 6.163476 TGGACACAAAGACACTACATATGTC 58.837 40.000 12.68 0.00 45.70 3.06
1639 7526 2.845752 TTCGGGGCGAGGTTTCATCG 62.846 60.000 0.00 0.00 43.00 3.84
1646 7533 2.346365 GTCTTTTCGGGGCGAGGT 59.654 61.111 0.00 0.00 37.14 3.85
1654 7541 1.298859 CCCTTCGCCTGTCTTTTCGG 61.299 60.000 0.00 0.00 0.00 4.30
1735 7622 4.458989 GCAATATGACAGGACAGGAAACAA 59.541 41.667 0.00 0.00 0.00 2.83
2027 7914 0.323957 AGGGTTCTTTCTACCGGCAC 59.676 55.000 0.00 0.00 36.49 5.01
2126 8020 7.626999 TTATTATAGCCATTACACAGACCCT 57.373 36.000 0.00 0.00 0.00 4.34
2147 8041 7.906199 ACTGAAGTCTTAGAGCCACTATTAT 57.094 36.000 0.00 0.00 0.00 1.28
2165 8059 7.012704 CCCTTGACCATTGATGTTATACTGAAG 59.987 40.741 0.00 0.00 0.00 3.02
2241 8135 4.954202 AGCCCATCATATTTATGGCAGATG 59.046 41.667 7.96 0.00 42.24 2.90
2273 8167 4.142730 CCTCGCAAATCTCCTGAAGAAAAG 60.143 45.833 0.00 0.00 37.61 2.27
2309 8207 0.836400 ATCACGGTCAGACCCACCTT 60.836 55.000 14.46 0.00 33.75 3.50
2384 8282 7.530426 ACAAGAGTCCATAGCAATTCTTTTT 57.470 32.000 0.00 0.00 0.00 1.94
2414 8312 6.027131 TGTGCAACGTCAATTTTATCATAGC 58.973 36.000 0.00 0.00 42.39 2.97
2460 8360 4.870123 AAAATGATGTAGGTGCAAAGCA 57.130 36.364 0.00 0.00 35.60 3.91
2506 8408 5.277250 TGGACAACATAAGGATGAGACCTA 58.723 41.667 0.00 0.00 39.62 3.08
2591 8496 8.797438 CCTATTCTCTGTTATGACATAGCTACA 58.203 37.037 10.24 4.93 34.72 2.74
2620 8525 3.496692 GCTACCATGGATGCTACCATTGA 60.497 47.826 21.47 5.07 47.00 2.57
2621 8526 2.816087 GCTACCATGGATGCTACCATTG 59.184 50.000 21.47 10.92 47.00 2.82
3015 11924 4.639755 TGAATCATGTGGATGCGTTACATT 59.360 37.500 6.93 0.00 39.84 2.71
4009 12985 6.726258 TTCTATTGCAGGTCATAATATGCG 57.274 37.500 0.00 0.00 41.58 4.73
4601 13993 3.655211 CCCCTTGCCACCTGCTCT 61.655 66.667 0.00 0.00 42.00 4.09
5071 14463 3.407967 CCTTGCCGGCCCTCCTTA 61.408 66.667 26.77 0.00 0.00 2.69
5084 14476 1.337823 CCCCGCGATACCTAATCCTTG 60.338 57.143 8.23 0.00 0.00 3.61
5085 14477 0.974383 CCCCGCGATACCTAATCCTT 59.026 55.000 8.23 0.00 0.00 3.36
5135 14527 2.281276 GGCACGAAAAGGTCCCGT 60.281 61.111 0.00 0.00 36.95 5.28
5212 14618 8.895737 GCTCTACACATAAGAGGGTATCTATAC 58.104 40.741 2.57 0.00 40.73 1.47
5213 14619 8.053963 GGCTCTACACATAAGAGGGTATCTATA 58.946 40.741 2.57 0.00 40.73 1.31
5214 14620 6.893005 GGCTCTACACATAAGAGGGTATCTAT 59.107 42.308 2.57 0.00 40.73 1.98
5215 14621 6.183361 TGGCTCTACACATAAGAGGGTATCTA 60.183 42.308 2.57 0.00 40.73 1.98
5216 14622 5.081032 GGCTCTACACATAAGAGGGTATCT 58.919 45.833 2.57 0.00 40.73 1.98
5217 14623 4.833380 TGGCTCTACACATAAGAGGGTATC 59.167 45.833 2.57 0.00 40.73 2.24
5226 14637 7.519057 AGATAGACTAGTGGCTCTACACATAA 58.481 38.462 0.00 0.00 43.72 1.90
5265 14676 8.696374 CATACATATCCTACCTCGGTAATTGAT 58.304 37.037 0.00 3.32 0.00 2.57
5269 14680 6.606395 GTCCATACATATCCTACCTCGGTAAT 59.394 42.308 0.00 0.00 0.00 1.89
5274 14685 4.341487 TGGTCCATACATATCCTACCTCG 58.659 47.826 0.00 0.00 0.00 4.63
5282 14693 9.102757 CAGCTATAACAATGGTCCATACATATC 57.897 37.037 4.33 0.00 0.00 1.63
5382 18155 9.869757 CATACATCGACATATTATTCTACCCAA 57.130 33.333 0.00 0.00 0.00 4.12
5537 18338 6.917477 TGCACTGTTTGTTGATTTCTGTAATC 59.083 34.615 0.58 0.58 42.52 1.75
5558 18691 2.005451 CAGTGGAAGATACTGCTGCAC 58.995 52.381 0.00 0.00 39.09 4.57
5638 18773 6.618287 TTGTCAGACCTCTATGTTTGTTTG 57.382 37.500 0.00 0.00 0.00 2.93
5640 18775 6.591935 TCTTTGTCAGACCTCTATGTTTGTT 58.408 36.000 0.00 0.00 0.00 2.83
5719 18855 1.622811 AGCTCTGTCTTGGACTCTTGG 59.377 52.381 0.00 0.00 33.15 3.61
5720 18856 2.686235 CAGCTCTGTCTTGGACTCTTG 58.314 52.381 0.00 0.00 33.15 3.02
5721 18857 1.001860 GCAGCTCTGTCTTGGACTCTT 59.998 52.381 0.00 0.00 33.15 2.85
5722 18858 0.607620 GCAGCTCTGTCTTGGACTCT 59.392 55.000 0.00 0.00 33.15 3.24
5723 18859 0.319728 TGCAGCTCTGTCTTGGACTC 59.680 55.000 0.00 0.00 33.15 3.36
5724 18860 0.034616 GTGCAGCTCTGTCTTGGACT 59.965 55.000 0.00 0.00 33.15 3.85
5725 18861 0.034616 AGTGCAGCTCTGTCTTGGAC 59.965 55.000 0.00 0.00 0.00 4.02
5726 18862 0.761187 AAGTGCAGCTCTGTCTTGGA 59.239 50.000 0.00 0.00 0.00 3.53
5801 18940 2.165641 CACGTGCCATCCTAACAGAGTA 59.834 50.000 0.82 0.00 0.00 2.59
5899 19047 1.219393 GACTAGCCCTTGCGAGCTT 59.781 57.895 0.00 0.00 43.27 3.74
5903 19051 2.359169 CCAGGACTAGCCCTTGCGA 61.359 63.158 0.00 0.00 44.33 5.10
5905 19053 2.124529 GCCAGGACTAGCCCTTGC 60.125 66.667 5.38 5.38 37.73 4.01
5916 19064 1.067295 ACAAACCAGATCAGCCAGGA 58.933 50.000 0.00 0.00 0.00 3.86
5946 19094 8.547967 TGTACTTCTAAGCTTTCCTTAACATG 57.452 34.615 3.20 0.00 35.68 3.21
6062 19298 7.521529 CATTCACTCAAGACACAAACGATTAT 58.478 34.615 0.00 0.00 0.00 1.28
6063 19299 6.565811 GCATTCACTCAAGACACAAACGATTA 60.566 38.462 0.00 0.00 0.00 1.75
6064 19300 5.751680 CATTCACTCAAGACACAAACGATT 58.248 37.500 0.00 0.00 0.00 3.34
6069 19305 5.300034 AGAATGCATTCACTCAAGACACAAA 59.700 36.000 34.59 0.00 39.23 2.83
6070 19306 4.823442 AGAATGCATTCACTCAAGACACAA 59.177 37.500 34.59 0.00 39.23 3.33
6071 19307 4.392047 AGAATGCATTCACTCAAGACACA 58.608 39.130 34.59 0.00 39.23 3.72
6072 19308 5.064452 CCTAGAATGCATTCACTCAAGACAC 59.936 44.000 34.59 9.78 39.23 3.67
6073 19309 5.181009 CCTAGAATGCATTCACTCAAGACA 58.819 41.667 34.59 11.59 39.23 3.41
6074 19310 4.574013 CCCTAGAATGCATTCACTCAAGAC 59.426 45.833 34.59 10.95 39.23 3.01
6075 19311 4.471025 TCCCTAGAATGCATTCACTCAAGA 59.529 41.667 34.59 21.79 39.23 3.02
6076 19312 4.774124 TCCCTAGAATGCATTCACTCAAG 58.226 43.478 34.59 23.01 39.23 3.02
6098 19336 8.667076 AAACATTTGGTCTAGTAAAACGTACT 57.333 30.769 0.00 0.00 0.00 2.73
6125 19367 8.784043 AGAACTTCATCAATTTTGTACCACTAC 58.216 33.333 0.00 0.00 0.00 2.73
6143 19385 6.352016 AGTCTGCAGAATTAGAGAACTTCA 57.648 37.500 20.19 0.00 0.00 3.02
6150 19392 6.640499 CCTTCGAATAGTCTGCAGAATTAGAG 59.360 42.308 23.21 14.00 0.00 2.43
6275 19517 2.565391 TGCATTACCTCTCGTCCTTTGA 59.435 45.455 0.00 0.00 0.00 2.69
6442 20421 7.867403 TGCTCTTTTGAATTTTCATCCTACAAC 59.133 33.333 0.00 0.00 37.00 3.32
6454 20433 4.734398 TGTGGTGTGCTCTTTTGAATTT 57.266 36.364 0.00 0.00 0.00 1.82
6465 20444 1.133823 TCACTCCATTTGTGGTGTGCT 60.134 47.619 19.44 0.00 46.90 4.40
6536 20533 5.628130 ACTTTGTATCCCTGATGATGATGG 58.372 41.667 0.00 0.00 0.00 3.51
6611 20614 2.173569 GGTAACCATCTGATCTTGGCCT 59.826 50.000 3.32 0.00 36.41 5.19
6703 20706 1.080298 AAGCTTGGCAAATGAGCGC 60.080 52.632 0.00 0.00 41.19 5.92
6887 20906 1.604604 TACTGACTTGGCAAACTGGC 58.395 50.000 0.00 0.00 44.03 4.85
6888 20907 4.549458 CAATTACTGACTTGGCAAACTGG 58.451 43.478 0.00 0.00 0.00 4.00
6889 20908 4.037923 ACCAATTACTGACTTGGCAAACTG 59.962 41.667 0.00 5.52 44.74 3.16
6890 20909 4.037923 CACCAATTACTGACTTGGCAAACT 59.962 41.667 0.00 0.00 44.74 2.66
6891 20910 4.037446 TCACCAATTACTGACTTGGCAAAC 59.963 41.667 0.00 0.00 44.74 2.93
6892 20911 4.211125 TCACCAATTACTGACTTGGCAAA 58.789 39.130 0.00 0.00 44.74 3.68
6893 20912 3.826524 TCACCAATTACTGACTTGGCAA 58.173 40.909 0.00 0.00 44.74 4.52
6999 21129 0.394938 TCTTGCAACAGAGCCCGTTA 59.605 50.000 0.00 0.00 0.00 3.18
7037 21168 7.760340 AGTCGAGATACAGTTTTATTGTTCCTC 59.240 37.037 0.00 0.00 0.00 3.71
7050 21181 5.871524 TCGTTAGTACAAGTCGAGATACAGT 59.128 40.000 0.00 0.00 0.00 3.55
7060 21191 4.809426 CCATGGGAATCGTTAGTACAAGTC 59.191 45.833 2.85 0.00 0.00 3.01
7235 21384 4.589908 ACATACAAAAGGTGAGGTGGATC 58.410 43.478 0.00 0.00 0.00 3.36
7306 21488 8.211629 CCCTAGCTAAATCCAGTAGTACAAAAT 58.788 37.037 2.52 0.00 0.00 1.82
7394 25234 5.791367 CATGGCTTGGAGATATGAATACG 57.209 43.478 0.00 0.00 0.00 3.06
7447 25288 3.054728 TCCCAAATTGATCCGCAAGAGTA 60.055 43.478 0.00 0.00 40.42 2.59
7451 25292 3.056607 AGTTTCCCAAATTGATCCGCAAG 60.057 43.478 0.00 0.00 40.42 4.01
7452 25293 2.896685 AGTTTCCCAAATTGATCCGCAA 59.103 40.909 0.00 0.00 41.53 4.85
7468 25309 3.704800 AGAGTAGCCTTGGGAAGTTTC 57.295 47.619 0.00 0.00 0.00 2.78
7483 25324 9.515226 GGAAATGGGTATATAATGCAAAGAGTA 57.485 33.333 0.00 0.00 0.00 2.59
7485 25326 8.641498 AGGAAATGGGTATATAATGCAAAGAG 57.359 34.615 0.00 0.00 0.00 2.85
7597 25479 3.435026 CCTCGTGGATTCAATAATGGGGT 60.435 47.826 0.00 0.00 34.57 4.95
7643 25527 2.817844 ACCCTAATCGCTGGAAAACAAC 59.182 45.455 0.00 0.00 0.00 3.32
7645 25529 2.039216 TCACCCTAATCGCTGGAAAACA 59.961 45.455 0.00 0.00 0.00 2.83
7646 25530 2.706890 TCACCCTAATCGCTGGAAAAC 58.293 47.619 0.00 0.00 0.00 2.43
7650 25534 0.830648 CCTTCACCCTAATCGCTGGA 59.169 55.000 0.00 0.00 0.00 3.86
7653 25544 0.983378 AGCCCTTCACCCTAATCGCT 60.983 55.000 0.00 0.00 0.00 4.93
7656 25547 0.466372 GGCAGCCCTTCACCCTAATC 60.466 60.000 0.00 0.00 0.00 1.75
7671 25562 1.032114 CCCCTAAAAAGGAGCGGCAG 61.032 60.000 1.45 0.00 0.00 4.85
7673 25564 1.753078 CCCCCTAAAAAGGAGCGGC 60.753 63.158 0.00 0.00 0.00 6.53
7712 25603 0.037605 GCACCGGTAGCACTACAAGT 60.038 55.000 19.85 3.62 37.78 3.16
7718 25609 1.377202 CCAATGCACCGGTAGCACT 60.377 57.895 26.70 17.62 45.95 4.40
7726 25617 1.165907 ATATGGCGTCCAATGCACCG 61.166 55.000 2.68 0.00 36.95 4.94
7733 25624 0.943673 CAATGCGATATGGCGTCCAA 59.056 50.000 4.79 0.00 36.95 3.53
7734 25625 0.179059 ACAATGCGATATGGCGTCCA 60.179 50.000 4.79 1.01 38.19 4.02
7735 25626 1.790755 TACAATGCGATATGGCGTCC 58.209 50.000 4.79 0.00 35.06 4.79
7736 25627 3.870723 TTTACAATGCGATATGGCGTC 57.129 42.857 4.79 0.00 35.06 5.19
7737 25628 4.036262 ACATTTTACAATGCGATATGGCGT 59.964 37.500 5.18 1.55 43.39 5.68
7738 25629 4.536065 ACATTTTACAATGCGATATGGCG 58.464 39.130 5.18 0.00 43.39 5.69
7739 25630 6.475076 TGAAACATTTTACAATGCGATATGGC 59.525 34.615 2.25 2.25 43.39 4.40
7740 25631 7.984002 TGAAACATTTTACAATGCGATATGG 57.016 32.000 1.43 0.00 43.39 2.74
7766 25657 9.468532 GATGTGCTAGACTTTTTCAAGATTTTT 57.531 29.630 0.00 0.00 33.72 1.94
7767 25658 7.805071 CGATGTGCTAGACTTTTTCAAGATTTT 59.195 33.333 0.00 0.00 33.72 1.82
7768 25659 7.173218 TCGATGTGCTAGACTTTTTCAAGATTT 59.827 33.333 0.00 0.00 33.72 2.17
7769 25660 6.650807 TCGATGTGCTAGACTTTTTCAAGATT 59.349 34.615 0.00 0.00 33.72 2.40
7770 25661 6.091441 GTCGATGTGCTAGACTTTTTCAAGAT 59.909 38.462 0.00 0.00 33.72 2.40
7771 25662 5.405571 GTCGATGTGCTAGACTTTTTCAAGA 59.594 40.000 0.00 0.00 33.72 3.02
7772 25663 5.177511 TGTCGATGTGCTAGACTTTTTCAAG 59.822 40.000 0.00 0.00 36.01 3.02
7773 25664 5.050363 GTGTCGATGTGCTAGACTTTTTCAA 60.050 40.000 0.00 0.00 36.01 2.69
7774 25665 4.447724 GTGTCGATGTGCTAGACTTTTTCA 59.552 41.667 0.00 0.00 36.01 2.69
7775 25666 4.447724 TGTGTCGATGTGCTAGACTTTTTC 59.552 41.667 0.00 0.00 36.01 2.29
7776 25667 4.377021 TGTGTCGATGTGCTAGACTTTTT 58.623 39.130 0.00 0.00 36.01 1.94
7777 25668 3.990092 TGTGTCGATGTGCTAGACTTTT 58.010 40.909 0.00 0.00 36.01 2.27
7778 25669 3.660501 TGTGTCGATGTGCTAGACTTT 57.339 42.857 0.00 0.00 36.01 2.66
7779 25670 3.243737 TGTTGTGTCGATGTGCTAGACTT 60.244 43.478 0.00 0.00 36.01 3.01
7780 25671 2.296190 TGTTGTGTCGATGTGCTAGACT 59.704 45.455 0.00 0.00 36.01 3.24
7781 25672 2.672714 TGTTGTGTCGATGTGCTAGAC 58.327 47.619 0.00 0.00 35.61 2.59
7782 25673 3.592898 ATGTTGTGTCGATGTGCTAGA 57.407 42.857 0.00 0.00 0.00 2.43
7783 25674 5.778161 TTAATGTTGTGTCGATGTGCTAG 57.222 39.130 0.00 0.00 0.00 3.42
7784 25675 5.699001 ACTTTAATGTTGTGTCGATGTGCTA 59.301 36.000 0.00 0.00 0.00 3.49
7785 25676 4.515191 ACTTTAATGTTGTGTCGATGTGCT 59.485 37.500 0.00 0.00 0.00 4.40
7786 25677 4.783242 ACTTTAATGTTGTGTCGATGTGC 58.217 39.130 0.00 0.00 0.00 4.57
7787 25678 7.518161 ACATACTTTAATGTTGTGTCGATGTG 58.482 34.615 0.00 0.00 36.71 3.21
7788 25679 7.667043 ACATACTTTAATGTTGTGTCGATGT 57.333 32.000 0.00 0.00 36.71 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.