Multiple sequence alignment - TraesCS6D01G039100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G039100 chr6D 100.000 3077 0 0 1 3077 16188855 16185779 0.000000e+00 5683.0
1 TraesCS6D01G039100 chr6D 96.809 94 3 0 2693 2786 251235132 251235039 1.140000e-34 158.0
2 TraesCS6D01G039100 chr6A 92.656 1525 101 5 929 2451 16453882 16452367 0.000000e+00 2185.0
3 TraesCS6D01G039100 chr6A 83.528 771 69 28 28 769 16455209 16454468 0.000000e+00 667.0
4 TraesCS6D01G039100 chr6A 89.695 262 14 6 2807 3058 16449796 16449538 3.830000e-84 322.0
5 TraesCS6D01G039100 chr2B 93.724 1466 68 11 929 2386 46592439 46590990 0.000000e+00 2176.0
6 TraesCS6D01G039100 chr2B 82.278 316 13 16 37 317 46593753 46593446 1.840000e-57 233.0
7 TraesCS6D01G039100 chr2B 92.035 113 9 0 472 584 46593432 46593320 3.180000e-35 159.0
8 TraesCS6D01G039100 chr6B 91.846 1349 83 11 1360 2694 27938043 27936708 0.000000e+00 1857.0
9 TraesCS6D01G039100 chr6B 91.495 776 54 5 1835 2599 28013496 28014270 0.000000e+00 1057.0
10 TraesCS6D01G039100 chr6B 93.625 549 28 2 929 1476 28012953 28013495 0.000000e+00 813.0
11 TraesCS6D01G039100 chr6B 81.643 779 61 43 22 750 27939693 27938947 3.440000e-159 571.0
12 TraesCS6D01G039100 chr6B 94.526 274 12 2 2805 3077 27935829 27935558 1.320000e-113 420.0
13 TraesCS6D01G039100 chr6B 89.575 259 16 4 2805 3060 28015603 28015853 4.950000e-83 318.0
14 TraesCS6D01G039100 chr6B 95.161 186 9 0 929 1114 27938236 27938051 8.340000e-76 294.0
15 TraesCS6D01G039100 chr6B 79.200 375 20 30 28 353 28011835 28012200 1.120000e-49 207.0
16 TraesCS6D01G039100 chr6B 88.618 123 13 1 644 766 28012279 28012400 6.870000e-32 148.0
17 TraesCS6D01G039100 chr6B 88.372 86 9 1 2611 2696 28014436 28014520 5.430000e-18 102.0
18 TraesCS6D01G039100 chr6B 100.000 40 0 0 589 628 28012200 28012239 1.180000e-09 75.0
19 TraesCS6D01G039100 chr6B 100.000 29 0 0 3049 3077 28015873 28015901 2.000000e-03 54.7
20 TraesCS6D01G039100 chr4D 97.849 93 2 0 2694 2786 323929671 323929579 8.830000e-36 161.0
21 TraesCS6D01G039100 chr4D 93.069 101 7 0 2686 2786 110080925 110081025 6.870000e-32 148.0
22 TraesCS6D01G039100 chr7A 97.802 91 2 0 2696 2786 704896217 704896127 1.140000e-34 158.0
23 TraesCS6D01G039100 chr5D 96.774 93 3 0 2693 2785 521371680 521371588 4.110000e-34 156.0
24 TraesCS6D01G039100 chr5B 93.204 103 7 0 2692 2794 645989780 645989678 5.310000e-33 152.0
25 TraesCS6D01G039100 chr5A 92.523 107 6 2 2693 2797 90044754 90044648 5.310000e-33 152.0
26 TraesCS6D01G039100 chr3A 92.523 107 6 2 2693 2797 198036035 198035929 5.310000e-33 152.0
27 TraesCS6D01G039100 chr2A 93.939 99 6 0 2688 2786 587158365 587158267 1.910000e-32 150.0
28 TraesCS6D01G039100 chr1D 91.803 61 4 1 2906 2965 84562695 84562755 1.970000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G039100 chr6D 16185779 16188855 3076 True 5683.0000 5683 100.000000 1 3077 1 chr6D.!!$R1 3076
1 TraesCS6D01G039100 chr6A 16449538 16455209 5671 True 1058.0000 2185 88.626333 28 3058 3 chr6A.!!$R1 3030
2 TraesCS6D01G039100 chr2B 46590990 46593753 2763 True 856.0000 2176 89.345667 37 2386 3 chr2B.!!$R1 2349
3 TraesCS6D01G039100 chr6B 27935558 27939693 4135 True 785.5000 1857 90.794000 22 3077 4 chr6B.!!$R1 3055
4 TraesCS6D01G039100 chr6B 28011835 28015901 4066 False 346.8375 1057 91.360625 28 3077 8 chr6B.!!$F1 3049

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 368 0.103876 CCCCTCCCCCTAAGGCTTAT 60.104 60.0 7.54 0.0 32.15 1.73 F
829 956 0.111253 ACTTGGCTGAACTCCCTTGG 59.889 55.0 0.00 0.0 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 2399 0.179048 CCACTGTCTGTGCCTTGACA 60.179 55.000 4.40 0.0 44.92 3.58 R
2497 3260 1.539929 CGGTGGGTACAAACAACGGTA 60.540 52.381 12.33 0.0 43.58 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
230 289 4.813526 CGTCGGCCTCGTCTCGTG 62.814 72.222 0.00 0.00 37.69 4.35
291 354 3.825623 CATGCCTTCCCCTCCCCC 61.826 72.222 0.00 0.00 0.00 5.40
301 368 0.103876 CCCCTCCCCCTAAGGCTTAT 60.104 60.000 7.54 0.00 32.15 1.73
347 415 0.512952 GATTTGCCGATCCGATTCCG 59.487 55.000 0.00 0.00 0.00 4.30
353 421 0.314302 CCGATCCGATTCCGCTTACT 59.686 55.000 0.00 0.00 0.00 2.24
378 446 3.133542 TGCTCTGGATTGATGACTCGATT 59.866 43.478 0.00 0.00 0.00 3.34
380 448 3.969899 TCTGGATTGATGACTCGATTCG 58.030 45.455 0.00 0.00 0.00 3.34
381 449 3.632145 TCTGGATTGATGACTCGATTCGA 59.368 43.478 8.70 8.70 0.00 3.71
403 471 4.114015 TCTAGATTCTAGAATGGGGCGA 57.886 45.455 22.61 8.63 0.00 5.54
447 515 4.467084 TCGCGGCAACCTGATCCC 62.467 66.667 6.13 0.00 0.00 3.85
499 567 1.786928 CGCGTTGAGAAATTTCGAGCC 60.787 52.381 12.42 4.63 0.00 4.70
528 596 1.158007 AGTGGGGGATTCACAGGTTT 58.842 50.000 0.00 0.00 37.58 3.27
562 632 3.261897 ACCGAGTTCAGATTGATTGGAGT 59.738 43.478 0.00 0.00 0.00 3.85
628 702 1.810151 CCAGTTACCACCCAATTCACG 59.190 52.381 0.00 0.00 0.00 4.35
629 703 1.199097 CAGTTACCACCCAATTCACGC 59.801 52.381 0.00 0.00 0.00 5.34
630 704 1.073284 AGTTACCACCCAATTCACGCT 59.927 47.619 0.00 0.00 0.00 5.07
631 705 1.883926 GTTACCACCCAATTCACGCTT 59.116 47.619 0.00 0.00 0.00 4.68
633 707 0.673437 ACCACCCAATTCACGCTTTG 59.327 50.000 0.00 0.00 0.00 2.77
634 708 0.673437 CCACCCAATTCACGCTTTGT 59.327 50.000 0.00 0.00 0.00 2.83
637 711 3.692101 CCACCCAATTCACGCTTTGTATA 59.308 43.478 0.00 0.00 0.00 1.47
638 712 4.338118 CCACCCAATTCACGCTTTGTATAT 59.662 41.667 0.00 0.00 0.00 0.86
639 713 5.529430 CCACCCAATTCACGCTTTGTATATA 59.471 40.000 0.00 0.00 0.00 0.86
640 714 6.206634 CCACCCAATTCACGCTTTGTATATAT 59.793 38.462 0.00 0.00 0.00 0.86
641 715 7.298122 CACCCAATTCACGCTTTGTATATATC 58.702 38.462 0.00 0.00 0.00 1.63
682 794 4.199432 AGAGTGTCAAGCCATCTTACAG 57.801 45.455 0.00 0.00 0.00 2.74
697 809 4.245660 TCTTACAGAAGGAACATTCAGCG 58.754 43.478 2.31 0.00 33.09 5.18
757 884 3.555956 CGTACCTTGTGATCAAGCATACC 59.444 47.826 0.00 0.00 46.74 2.73
770 897 1.308998 GCATACCGCTATTTGGCAGT 58.691 50.000 0.00 0.00 37.77 4.40
771 898 1.676006 GCATACCGCTATTTGGCAGTT 59.324 47.619 0.00 0.00 37.77 3.16
772 899 2.541588 GCATACCGCTATTTGGCAGTTG 60.542 50.000 0.00 0.00 37.77 3.16
773 900 1.745232 TACCGCTATTTGGCAGTTGG 58.255 50.000 0.00 0.00 0.00 3.77
774 901 1.139520 CCGCTATTTGGCAGTTGGC 59.860 57.895 0.00 0.00 43.74 4.52
782 909 3.790416 TGGCAGTTGGCACACTCCC 62.790 63.158 4.06 3.65 46.12 4.30
783 910 2.113986 GCAGTTGGCACACTCCCT 59.886 61.111 0.00 0.00 43.97 4.20
785 912 1.799258 GCAGTTGGCACACTCCCTTG 61.799 60.000 0.00 0.00 43.97 3.61
786 913 1.151450 AGTTGGCACACTCCCTTGG 59.849 57.895 0.00 0.00 39.29 3.61
789 916 1.352622 TTGGCACACTCCCTTGGTCT 61.353 55.000 0.00 0.00 39.29 3.85
790 917 1.352622 TGGCACACTCCCTTGGTCTT 61.353 55.000 0.00 0.00 0.00 3.01
791 918 0.606673 GGCACACTCCCTTGGTCTTC 60.607 60.000 0.00 0.00 0.00 2.87
792 919 0.398318 GCACACTCCCTTGGTCTTCT 59.602 55.000 0.00 0.00 0.00 2.85
793 920 1.879796 GCACACTCCCTTGGTCTTCTG 60.880 57.143 0.00 0.00 0.00 3.02
795 922 0.322008 CACTCCCTTGGTCTTCTGCC 60.322 60.000 0.00 0.00 0.00 4.85
796 923 0.768221 ACTCCCTTGGTCTTCTGCCA 60.768 55.000 0.00 0.00 0.00 4.92
798 925 0.620556 TCCCTTGGTCTTCTGCCATC 59.379 55.000 0.00 0.00 35.71 3.51
799 926 0.329261 CCCTTGGTCTTCTGCCATCA 59.671 55.000 0.00 0.00 35.71 3.07
801 928 2.622452 CCCTTGGTCTTCTGCCATCAAT 60.622 50.000 0.00 0.00 35.71 2.57
803 930 3.512724 CCTTGGTCTTCTGCCATCAATTT 59.487 43.478 0.00 0.00 35.71 1.82
804 931 4.491676 CTTGGTCTTCTGCCATCAATTTG 58.508 43.478 0.00 0.00 35.71 2.32
805 932 3.499338 TGGTCTTCTGCCATCAATTTGT 58.501 40.909 0.00 0.00 0.00 2.83
806 933 3.896888 TGGTCTTCTGCCATCAATTTGTT 59.103 39.130 0.00 0.00 0.00 2.83
808 935 5.163322 TGGTCTTCTGCCATCAATTTGTTTT 60.163 36.000 0.00 0.00 0.00 2.43
809 936 6.041409 TGGTCTTCTGCCATCAATTTGTTTTA 59.959 34.615 0.00 0.00 0.00 1.52
811 938 7.095649 GGTCTTCTGCCATCAATTTGTTTTAAC 60.096 37.037 0.00 0.00 0.00 2.01
812 939 7.653311 GTCTTCTGCCATCAATTTGTTTTAACT 59.347 33.333 0.00 0.00 0.00 2.24
815 942 6.705381 TCTGCCATCAATTTGTTTTAACTTGG 59.295 34.615 0.00 0.00 0.00 3.61
817 944 5.469760 GCCATCAATTTGTTTTAACTTGGCT 59.530 36.000 0.00 0.00 41.97 4.75
819 946 6.705381 CCATCAATTTGTTTTAACTTGGCTGA 59.295 34.615 0.00 0.00 0.00 4.26
820 947 7.226325 CCATCAATTTGTTTTAACTTGGCTGAA 59.774 33.333 0.00 0.00 0.00 3.02
821 948 7.532682 TCAATTTGTTTTAACTTGGCTGAAC 57.467 32.000 0.00 0.00 0.00 3.18
825 952 3.634910 TGTTTTAACTTGGCTGAACTCCC 59.365 43.478 0.00 0.00 0.00 4.30
826 953 3.876309 TTTAACTTGGCTGAACTCCCT 57.124 42.857 0.00 0.00 0.00 4.20
827 954 3.876309 TTAACTTGGCTGAACTCCCTT 57.124 42.857 0.00 0.00 0.00 3.95
828 955 1.986882 AACTTGGCTGAACTCCCTTG 58.013 50.000 0.00 0.00 0.00 3.61
829 956 0.111253 ACTTGGCTGAACTCCCTTGG 59.889 55.000 0.00 0.00 0.00 3.61
831 958 2.361737 GGCTGAACTCCCTTGGCC 60.362 66.667 0.00 0.00 0.00 5.36
832 959 2.759795 GCTGAACTCCCTTGGCCT 59.240 61.111 3.32 0.00 0.00 5.19
834 961 0.540597 GCTGAACTCCCTTGGCCTTT 60.541 55.000 3.32 0.00 0.00 3.11
835 962 2.001076 CTGAACTCCCTTGGCCTTTT 57.999 50.000 3.32 0.00 0.00 2.27
836 963 2.319844 CTGAACTCCCTTGGCCTTTTT 58.680 47.619 3.32 0.00 0.00 1.94
838 965 3.496331 TGAACTCCCTTGGCCTTTTTAG 58.504 45.455 3.32 0.00 0.00 1.85
839 966 2.604912 ACTCCCTTGGCCTTTTTAGG 57.395 50.000 3.32 2.88 0.00 2.69
856 983 2.124736 GCTATGTGCCGGGCTTCA 60.125 61.111 21.46 18.66 35.15 3.02
857 984 1.526917 GCTATGTGCCGGGCTTCAT 60.527 57.895 21.46 23.43 35.15 2.57
859 986 0.464373 CTATGTGCCGGGCTTCATGT 60.464 55.000 27.31 14.33 0.00 3.21
861 988 0.748005 ATGTGCCGGGCTTCATGTAC 60.748 55.000 21.46 8.51 0.00 2.90
862 989 1.078426 GTGCCGGGCTTCATGTACT 60.078 57.895 21.46 0.00 0.00 2.73
864 991 1.264749 TGCCGGGCTTCATGTACTCT 61.265 55.000 21.46 0.00 0.00 3.24
866 993 0.811616 CCGGGCTTCATGTACTCTGC 60.812 60.000 0.00 0.00 0.00 4.26
867 994 0.811616 CGGGCTTCATGTACTCTGCC 60.812 60.000 0.00 0.00 39.61 4.85
868 995 0.543749 GGGCTTCATGTACTCTGCCT 59.456 55.000 12.75 0.00 40.15 4.75
869 996 1.661341 GGCTTCATGTACTCTGCCTG 58.339 55.000 0.00 0.00 37.58 4.85
870 997 1.012841 GCTTCATGTACTCTGCCTGC 58.987 55.000 0.00 0.00 0.00 4.85
871 998 1.406614 GCTTCATGTACTCTGCCTGCT 60.407 52.381 0.00 0.00 0.00 4.24
872 999 2.277969 CTTCATGTACTCTGCCTGCTG 58.722 52.381 0.00 0.00 0.00 4.41
873 1000 1.269958 TCATGTACTCTGCCTGCTGT 58.730 50.000 0.00 0.00 0.00 4.40
874 1001 1.066645 TCATGTACTCTGCCTGCTGTG 60.067 52.381 0.00 0.00 0.00 3.66
875 1002 0.251354 ATGTACTCTGCCTGCTGTGG 59.749 55.000 0.00 0.00 0.00 4.17
876 1003 1.078848 GTACTCTGCCTGCTGTGGG 60.079 63.158 3.71 0.00 0.00 4.61
883 1010 2.583472 GCCTGCTGTGGGCTTTATT 58.417 52.632 0.00 0.00 45.57 1.40
884 1011 1.762708 GCCTGCTGTGGGCTTTATTA 58.237 50.000 0.00 0.00 45.57 0.98
886 1013 2.695147 GCCTGCTGTGGGCTTTATTAAT 59.305 45.455 0.00 0.00 45.57 1.40
887 1014 3.132824 GCCTGCTGTGGGCTTTATTAATT 59.867 43.478 0.00 0.00 45.57 1.40
888 1015 4.685924 CCTGCTGTGGGCTTTATTAATTG 58.314 43.478 0.00 0.00 42.39 2.32
890 1017 5.105392 CCTGCTGTGGGCTTTATTAATTGAA 60.105 40.000 0.00 0.00 42.39 2.69
892 1019 4.805719 GCTGTGGGCTTTATTAATTGAAGC 59.194 41.667 19.92 19.92 43.76 3.86
899 1026 6.202815 GCTTTATTAATTGAAGCCGAATGC 57.797 37.500 18.43 5.62 39.79 3.56
908 1035 4.107051 GCCGAATGCTGCTTGCGT 62.107 61.111 13.97 0.00 46.63 5.24
913 1661 0.519999 GAATGCTGCTTGCGTCTTCG 60.520 55.000 0.00 0.00 46.63 3.79
916 1664 1.154580 GCTGCTTGCGTCTTCGTTC 60.155 57.895 0.00 0.00 39.49 3.95
918 1666 1.698165 CTGCTTGCGTCTTCGTTCTA 58.302 50.000 0.00 0.00 39.49 2.10
921 1669 2.867368 TGCTTGCGTCTTCGTTCTAAAA 59.133 40.909 0.00 0.00 39.49 1.52
1248 2003 2.029470 GGCCTCATCATTAGGAGAGTCG 60.029 54.545 0.00 0.00 35.51 4.18
1318 2073 2.743928 GGGCCAGTGCTTCGTCTG 60.744 66.667 4.39 0.00 37.74 3.51
1470 2225 2.033911 TGCATCTGCGCCCAAGAA 59.966 55.556 4.18 0.00 45.83 2.52
1599 2354 1.162800 GCGAGGCTTCCATCACCATC 61.163 60.000 0.00 0.00 0.00 3.51
1617 2372 2.935481 CCCTGCCCTGACCCTGAA 60.935 66.667 0.00 0.00 0.00 3.02
1623 2378 0.955919 GCCCTGACCCTGAAAAGACG 60.956 60.000 0.00 0.00 0.00 4.18
1637 2392 0.605083 AAGACGCACAGCTCAGATCA 59.395 50.000 0.00 0.00 0.00 2.92
1644 2399 3.552478 CGCACAGCTCAGATCACTATGAT 60.552 47.826 0.00 0.00 40.34 2.45
1660 2415 2.174363 TGATGTCAAGGCACAGACAG 57.826 50.000 11.31 0.00 45.66 3.51
1917 2672 2.428544 ATCTGGCTACACTCTCGAGT 57.571 50.000 13.13 0.00 43.61 4.18
1976 2731 0.888619 GTGTCATCGGTGTCCTCAGA 59.111 55.000 0.00 0.00 0.00 3.27
2118 2873 4.261994 GCCAGAAATCAGGCAAGTTTGTTA 60.262 41.667 11.51 0.00 46.40 2.41
2123 2878 5.705609 AATCAGGCAAGTTTGTTACGAAT 57.294 34.783 0.00 0.00 0.00 3.34
2197 2955 2.584791 CTTGTGCCAATTCAGTTACGC 58.415 47.619 0.00 0.00 0.00 4.42
2216 2974 2.285756 CGCAAGACGTGTTTCCAGTTTA 59.714 45.455 0.00 0.00 43.02 2.01
2347 3108 7.540474 AGAGAAAAGTCTGTGTAGGATACAA 57.460 36.000 0.00 0.00 43.88 2.41
2467 3230 9.996554 TCAAAGGTATATATAGGTGTGATTGTG 57.003 33.333 0.00 0.00 0.00 3.33
2481 3244 2.886523 TGATTGTGCCTGTTTTCCTCTG 59.113 45.455 0.00 0.00 0.00 3.35
2497 3260 3.840666 TCCTCTGCATTAACTTGGACTCT 59.159 43.478 0.00 0.00 0.00 3.24
2534 3303 1.069296 ACCGCACGATGATTTTGTGTG 60.069 47.619 0.00 0.00 45.93 3.82
2551 3325 1.737236 TGTGGTTGCGATGTTGCTATC 59.263 47.619 0.00 0.00 35.36 2.08
2566 3340 8.970691 ATGTTGCTATCAGAACACATTAAAAC 57.029 30.769 0.00 0.00 34.98 2.43
2612 3388 4.647853 AGTGAGTGTACTGTGTAACCAAGA 59.352 41.667 0.00 0.00 34.36 3.02
2658 3588 2.268298 CATTACTTTCCTGGTCGACGG 58.732 52.381 9.92 6.30 0.00 4.79
2681 3611 6.262273 CGGTATGGCTTTGATATGGTAACTTT 59.738 38.462 0.00 0.00 37.61 2.66
2682 3612 7.425606 GGTATGGCTTTGATATGGTAACTTTG 58.574 38.462 0.00 0.00 37.61 2.77
2705 3912 3.454812 GCCCTTCTGTAATACTTCCTCCA 59.545 47.826 0.00 0.00 0.00 3.86
2709 3916 5.221742 CCTTCTGTAATACTTCCTCCATCCC 60.222 48.000 0.00 0.00 0.00 3.85
2710 3917 4.890988 TCTGTAATACTTCCTCCATCCCA 58.109 43.478 0.00 0.00 0.00 4.37
2716 3923 8.561769 TGTAATACTTCCTCCATCCCAAAATAA 58.438 33.333 0.00 0.00 0.00 1.40
2717 3924 9.067986 GTAATACTTCCTCCATCCCAAAATAAG 57.932 37.037 0.00 0.00 0.00 1.73
2722 3929 4.540099 TCCTCCATCCCAAAATAAGTGTCT 59.460 41.667 0.00 0.00 0.00 3.41
2723 3930 4.884164 CCTCCATCCCAAAATAAGTGTCTC 59.116 45.833 0.00 0.00 0.00 3.36
2725 3932 5.886609 TCCATCCCAAAATAAGTGTCTCAA 58.113 37.500 0.00 0.00 0.00 3.02
2726 3933 5.710099 TCCATCCCAAAATAAGTGTCTCAAC 59.290 40.000 0.00 0.00 0.00 3.18
2727 3934 5.711976 CCATCCCAAAATAAGTGTCTCAACT 59.288 40.000 0.00 0.00 0.00 3.16
2728 3935 6.209391 CCATCCCAAAATAAGTGTCTCAACTT 59.791 38.462 0.00 0.00 42.89 2.66
2729 3936 7.255942 CCATCCCAAAATAAGTGTCTCAACTTT 60.256 37.037 0.00 0.00 40.77 2.66
2730 3937 7.038154 TCCCAAAATAAGTGTCTCAACTTTG 57.962 36.000 0.00 0.00 40.77 2.77
2731 3938 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2732 3939 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2733 3940 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2734 3941 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2742 3949 9.915629 AGTGTCTCAACTTTGTACTATCTTTAG 57.084 33.333 0.00 0.00 0.00 1.85
2743 3950 9.694137 GTGTCTCAACTTTGTACTATCTTTAGT 57.306 33.333 0.00 0.00 41.57 2.24
2769 3976 6.258068 ACAAAGTTGTACTAAGCTTGAGACAC 59.742 38.462 9.86 7.18 40.16 3.67
2770 3977 5.793030 AGTTGTACTAAGCTTGAGACACT 57.207 39.130 9.86 7.29 0.00 3.55
2776 3983 9.555727 TTGTACTAAGCTTGAGACACTTATTTT 57.444 29.630 9.86 0.00 0.00 1.82
2777 3984 8.988934 TGTACTAAGCTTGAGACACTTATTTTG 58.011 33.333 9.86 0.00 0.00 2.44
2801 4008 4.367386 ACGGAGTATTACTTTCCTGACG 57.633 45.455 0.00 0.00 41.94 4.35
2802 4009 3.114065 CGGAGTATTACTTTCCTGACGC 58.886 50.000 0.00 0.00 0.00 5.19
2803 4010 3.181489 CGGAGTATTACTTTCCTGACGCT 60.181 47.826 0.00 0.00 0.00 5.07
2816 7013 8.665685 ACTTTCCTGACGCTATAAATTTTACAG 58.334 33.333 0.00 0.00 0.00 2.74
2820 7017 7.705325 TCCTGACGCTATAAATTTTACAGTCTC 59.295 37.037 0.00 3.48 0.00 3.36
2838 7036 6.435591 ACAGTCTCTCATGAAGATGTGTTCTA 59.564 38.462 0.00 0.00 33.05 2.10
2885 7083 1.377202 GACGCAAGGCCATCCTGAA 60.377 57.895 5.01 0.00 43.40 3.02
2956 7154 5.607939 TCTTGGTCGTTGTGGATATGTAT 57.392 39.130 0.00 0.00 0.00 2.29
3003 7201 2.442236 ATTTGATCCTGCCGTCCAAT 57.558 45.000 0.00 0.00 0.00 3.16
3004 7202 1.462616 TTTGATCCTGCCGTCCAATG 58.537 50.000 0.00 0.00 0.00 2.82
3005 7203 0.327924 TTGATCCTGCCGTCCAATGT 59.672 50.000 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
230 289 0.179045 CATCGGTGATGGAAGGGACC 60.179 60.000 0.00 0.00 36.51 4.46
270 329 1.279025 GGGAGGGGAAGGCATGTACA 61.279 60.000 0.00 0.00 0.00 2.90
271 330 1.532238 GGGAGGGGAAGGCATGTAC 59.468 63.158 0.00 0.00 0.00 2.90
317 384 1.133915 TCGGCAAATCCTACCCAATCC 60.134 52.381 0.00 0.00 0.00 3.01
318 385 2.341846 TCGGCAAATCCTACCCAATC 57.658 50.000 0.00 0.00 0.00 2.67
347 415 2.012673 CAATCCAGAGCACCAGTAAGC 58.987 52.381 0.00 0.00 0.00 3.09
353 421 1.911357 AGTCATCAATCCAGAGCACCA 59.089 47.619 0.00 0.00 0.00 4.17
378 446 4.707448 GCCCCATTCTAGAATCTAGATCGA 59.293 45.833 19.49 6.71 0.00 3.59
380 448 4.707448 TCGCCCCATTCTAGAATCTAGATC 59.293 45.833 19.49 0.02 0.00 2.75
381 449 4.678256 TCGCCCCATTCTAGAATCTAGAT 58.322 43.478 19.49 0.00 0.00 1.98
447 515 6.017934 ACAAAAGCACAGACAGTATACACTTG 60.018 38.462 5.50 0.00 30.46 3.16
538 606 5.011090 TCCAATCAATCTGAACTCGGTAG 57.989 43.478 0.00 0.00 0.00 3.18
541 611 3.620374 CACTCCAATCAATCTGAACTCGG 59.380 47.826 0.00 0.00 0.00 4.63
562 632 1.957668 ATACATCTCGCAATGCAGCA 58.042 45.000 5.91 0.00 0.00 4.41
628 702 9.994432 GTTCCTATGCAATGATATATACAAAGC 57.006 33.333 0.00 0.00 0.00 3.51
633 707 9.587772 ACGAAGTTCCTATGCAATGATATATAC 57.412 33.333 0.00 0.00 37.78 1.47
637 711 8.367911 TCTTACGAAGTTCCTATGCAATGATAT 58.632 33.333 0.00 0.00 37.78 1.63
638 712 7.722363 TCTTACGAAGTTCCTATGCAATGATA 58.278 34.615 0.00 0.00 37.78 2.15
639 713 6.582636 TCTTACGAAGTTCCTATGCAATGAT 58.417 36.000 0.00 0.00 37.78 2.45
640 714 5.972935 TCTTACGAAGTTCCTATGCAATGA 58.027 37.500 0.00 0.00 37.78 2.57
641 715 5.812642 ACTCTTACGAAGTTCCTATGCAATG 59.187 40.000 0.00 0.00 37.78 2.82
656 763 2.826128 AGATGGCTTGACACTCTTACGA 59.174 45.455 0.00 0.00 0.00 3.43
682 794 1.537202 ACAAGCGCTGAATGTTCCTTC 59.463 47.619 12.58 0.00 0.00 3.46
697 809 7.140705 TGCATGCATATAGTGAAATAACAAGC 58.859 34.615 18.46 0.00 0.00 4.01
757 884 0.456653 GTGCCAACTGCCAAATAGCG 60.457 55.000 0.00 0.00 40.16 4.26
769 896 1.152756 ACCAAGGGAGTGTGCCAAC 60.153 57.895 0.00 0.00 0.00 3.77
770 897 1.150536 GACCAAGGGAGTGTGCCAA 59.849 57.895 0.00 0.00 0.00 4.52
771 898 1.352622 AAGACCAAGGGAGTGTGCCA 61.353 55.000 0.00 0.00 0.00 4.92
772 899 0.606673 GAAGACCAAGGGAGTGTGCC 60.607 60.000 0.00 0.00 0.00 5.01
773 900 0.398318 AGAAGACCAAGGGAGTGTGC 59.602 55.000 0.00 0.00 0.00 4.57
774 901 1.879796 GCAGAAGACCAAGGGAGTGTG 60.880 57.143 0.00 0.00 0.00 3.82
775 902 0.398318 GCAGAAGACCAAGGGAGTGT 59.602 55.000 0.00 0.00 0.00 3.55
776 903 0.322008 GGCAGAAGACCAAGGGAGTG 60.322 60.000 0.00 0.00 0.00 3.51
780 907 0.329261 TGATGGCAGAAGACCAAGGG 59.671 55.000 0.00 0.00 41.49 3.95
782 909 4.021719 ACAAATTGATGGCAGAAGACCAAG 60.022 41.667 0.00 0.00 41.49 3.61
783 910 3.896888 ACAAATTGATGGCAGAAGACCAA 59.103 39.130 0.00 0.00 41.49 3.67
785 912 4.525912 AACAAATTGATGGCAGAAGACC 57.474 40.909 0.00 0.00 0.00 3.85
786 913 7.653311 AGTTAAAACAAATTGATGGCAGAAGAC 59.347 33.333 0.00 0.00 0.00 3.01
789 916 7.226325 CCAAGTTAAAACAAATTGATGGCAGAA 59.774 33.333 0.00 0.00 0.00 3.02
790 917 6.705381 CCAAGTTAAAACAAATTGATGGCAGA 59.295 34.615 0.00 0.00 0.00 4.26
791 918 6.566376 GCCAAGTTAAAACAAATTGATGGCAG 60.566 38.462 0.00 0.00 46.66 4.85
792 919 5.238214 GCCAAGTTAAAACAAATTGATGGCA 59.762 36.000 0.00 0.00 46.66 4.92
793 920 5.688823 GCCAAGTTAAAACAAATTGATGGC 58.311 37.500 0.00 0.00 42.26 4.40
795 922 7.712264 TCAGCCAAGTTAAAACAAATTGATG 57.288 32.000 0.00 0.00 0.00 3.07
796 923 7.986889 AGTTCAGCCAAGTTAAAACAAATTGAT 59.013 29.630 0.00 0.00 0.00 2.57
798 925 7.254421 GGAGTTCAGCCAAGTTAAAACAAATTG 60.254 37.037 0.00 0.00 0.00 2.32
799 926 6.761242 GGAGTTCAGCCAAGTTAAAACAAATT 59.239 34.615 0.00 0.00 0.00 1.82
801 928 5.394773 GGGAGTTCAGCCAAGTTAAAACAAA 60.395 40.000 0.00 0.00 0.00 2.83
803 930 3.634910 GGGAGTTCAGCCAAGTTAAAACA 59.365 43.478 0.00 0.00 0.00 2.83
804 931 3.889538 AGGGAGTTCAGCCAAGTTAAAAC 59.110 43.478 0.00 0.00 0.00 2.43
805 932 4.178956 AGGGAGTTCAGCCAAGTTAAAA 57.821 40.909 0.00 0.00 0.00 1.52
806 933 3.876309 AGGGAGTTCAGCCAAGTTAAA 57.124 42.857 0.00 0.00 0.00 1.52
808 935 2.224769 CCAAGGGAGTTCAGCCAAGTTA 60.225 50.000 0.00 0.00 0.00 2.24
809 936 1.479389 CCAAGGGAGTTCAGCCAAGTT 60.479 52.381 0.00 0.00 0.00 2.66
811 938 1.246737 GCCAAGGGAGTTCAGCCAAG 61.247 60.000 0.00 0.00 0.00 3.61
812 939 1.228552 GCCAAGGGAGTTCAGCCAA 60.229 57.895 0.00 0.00 0.00 4.52
815 942 0.540597 AAAGGCCAAGGGAGTTCAGC 60.541 55.000 5.01 0.00 0.00 4.26
817 944 2.470057 AAAAAGGCCAAGGGAGTTCA 57.530 45.000 5.01 0.00 0.00 3.18
819 946 2.889512 CCTAAAAAGGCCAAGGGAGTT 58.110 47.619 5.01 0.00 0.00 3.01
820 947 2.604912 CCTAAAAAGGCCAAGGGAGT 57.395 50.000 5.01 0.00 0.00 3.85
839 966 1.526917 ATGAAGCCCGGCACATAGC 60.527 57.895 13.15 0.00 44.65 2.97
840 967 0.464373 ACATGAAGCCCGGCACATAG 60.464 55.000 13.15 12.73 0.00 2.23
842 969 0.748005 GTACATGAAGCCCGGCACAT 60.748 55.000 13.15 13.60 0.00 3.21
843 970 1.376683 GTACATGAAGCCCGGCACA 60.377 57.895 13.15 11.80 0.00 4.57
844 971 1.078426 AGTACATGAAGCCCGGCAC 60.078 57.895 13.15 5.92 0.00 5.01
846 973 0.811616 CAGAGTACATGAAGCCCGGC 60.812 60.000 0.00 0.00 0.00 6.13
847 974 0.811616 GCAGAGTACATGAAGCCCGG 60.812 60.000 0.00 0.00 0.00 5.73
848 975 0.811616 GGCAGAGTACATGAAGCCCG 60.812 60.000 0.00 0.00 36.17 6.13
849 976 0.543749 AGGCAGAGTACATGAAGCCC 59.456 55.000 0.00 0.00 42.97 5.19
850 977 1.661341 CAGGCAGAGTACATGAAGCC 58.339 55.000 0.00 3.26 42.31 4.35
851 978 1.012841 GCAGGCAGAGTACATGAAGC 58.987 55.000 0.00 0.00 0.00 3.86
853 980 1.625315 ACAGCAGGCAGAGTACATGAA 59.375 47.619 0.00 0.00 0.00 2.57
854 981 1.066645 CACAGCAGGCAGAGTACATGA 60.067 52.381 0.00 0.00 0.00 3.07
855 982 1.366679 CACAGCAGGCAGAGTACATG 58.633 55.000 0.00 0.00 0.00 3.21
856 983 0.251354 CCACAGCAGGCAGAGTACAT 59.749 55.000 0.00 0.00 0.00 2.29
857 984 1.673477 CCACAGCAGGCAGAGTACA 59.327 57.895 0.00 0.00 0.00 2.90
859 986 3.392228 CCCACAGCAGGCAGAGTA 58.608 61.111 0.00 0.00 0.00 2.59
869 996 4.805719 GCTTCAATTAATAAAGCCCACAGC 59.194 41.667 18.28 2.36 39.55 4.40
876 1003 6.202815 GCATTCGGCTTCAATTAATAAAGC 57.797 37.500 19.83 19.83 43.63 3.51
892 1019 1.915614 AAGACGCAAGCAGCATTCGG 61.916 55.000 0.00 0.00 46.13 4.30
893 1020 0.519999 GAAGACGCAAGCAGCATTCG 60.520 55.000 0.00 0.00 46.13 3.34
894 1021 0.519999 CGAAGACGCAAGCAGCATTC 60.520 55.000 0.00 2.40 46.13 2.67
895 1022 1.230635 ACGAAGACGCAAGCAGCATT 61.231 50.000 0.00 0.00 46.13 3.56
896 1023 1.230635 AACGAAGACGCAAGCAGCAT 61.231 50.000 0.00 0.00 46.13 3.79
897 1024 1.831389 GAACGAAGACGCAAGCAGCA 61.831 55.000 0.00 0.00 46.13 4.41
898 1025 1.154580 GAACGAAGACGCAAGCAGC 60.155 57.895 0.00 0.00 43.96 5.25
899 1026 1.698165 TAGAACGAAGACGCAAGCAG 58.302 50.000 0.00 0.00 43.96 4.24
900 1027 2.143008 TTAGAACGAAGACGCAAGCA 57.857 45.000 0.00 0.00 43.96 3.91
901 1028 3.515071 TTTTAGAACGAAGACGCAAGC 57.485 42.857 0.00 0.00 43.96 4.01
934 1682 2.723124 ACCGAACAAATTGATGGCAC 57.277 45.000 0.00 0.00 0.00 5.01
937 1685 3.255642 AGGTCAACCGAACAAATTGATGG 59.744 43.478 0.00 0.68 42.08 3.51
985 1733 3.557595 GGAAGCATATCTGGAGAAACACG 59.442 47.826 0.00 0.00 0.00 4.49
1075 1829 1.531423 CTGGCACCTATGGATGATGC 58.469 55.000 0.00 0.00 35.51 3.91
1276 2031 2.862347 GAAGCATGAACAGCTGCCGC 62.862 60.000 15.27 9.41 42.53 6.53
1277 2032 1.136147 GAAGCATGAACAGCTGCCG 59.864 57.895 15.27 0.00 42.53 5.69
1318 2073 2.159142 CCAATCCTTCTGCATGCTTTCC 60.159 50.000 20.33 0.00 0.00 3.13
1335 2090 2.698274 GACCTTCAACCCAAACACCAAT 59.302 45.455 0.00 0.00 0.00 3.16
1470 2225 4.287067 AGGATCATATCGGTAGGTGCAAAT 59.713 41.667 0.00 0.00 0.00 2.32
1617 2372 1.001293 TGATCTGAGCTGTGCGTCTTT 59.999 47.619 0.00 0.00 0.00 2.52
1623 2378 3.449528 TCATAGTGATCTGAGCTGTGC 57.550 47.619 0.00 0.00 0.00 4.57
1637 2392 3.261643 TGTCTGTGCCTTGACATCATAGT 59.738 43.478 0.00 0.00 38.15 2.12
1644 2399 0.179048 CCACTGTCTGTGCCTTGACA 60.179 55.000 4.40 0.00 44.92 3.58
1917 2672 3.695606 GAGCGTCCACTCCAGGCA 61.696 66.667 0.00 0.00 0.00 4.75
1918 2673 3.655810 CTGAGCGTCCACTCCAGGC 62.656 68.421 0.00 0.00 35.72 4.85
1976 2731 2.980233 GGCTTCCAGTTGCGCACT 60.980 61.111 11.12 8.31 35.35 4.40
2118 2873 2.496070 TGGTGCAGCTAAGAGTATTCGT 59.504 45.455 18.08 0.00 0.00 3.85
2123 2878 1.639722 TGGTGGTGCAGCTAAGAGTA 58.360 50.000 18.08 0.00 32.61 2.59
2197 2955 5.816919 ACATTAAACTGGAAACACGTCTTG 58.183 37.500 0.00 0.00 35.60 3.02
2216 2974 6.119240 TGAAATGAGAAGAGACCAGACATT 57.881 37.500 0.00 0.00 0.00 2.71
2467 3230 3.507622 AGTTAATGCAGAGGAAAACAGGC 59.492 43.478 0.00 0.00 0.00 4.85
2481 3244 3.858247 ACGGTAGAGTCCAAGTTAATGC 58.142 45.455 0.00 0.00 0.00 3.56
2497 3260 1.539929 CGGTGGGTACAAACAACGGTA 60.540 52.381 12.33 0.00 43.58 4.02
2534 3303 2.279741 TCTGATAGCAACATCGCAACC 58.720 47.619 0.00 0.00 0.00 3.77
2612 3388 7.337167 GCTATCAACAGGATGGATGAGATATT 58.663 38.462 0.00 0.00 43.62 1.28
2658 3588 7.425606 CCAAAGTTACCATATCAAAGCCATAC 58.574 38.462 0.00 0.00 0.00 2.39
2681 3611 3.454812 GAGGAAGTATTACAGAAGGGCCA 59.545 47.826 6.18 0.00 0.00 5.36
2682 3612 3.181453 GGAGGAAGTATTACAGAAGGGCC 60.181 52.174 0.00 0.00 0.00 5.80
2705 3912 7.287696 ACAAAGTTGAGACACTTATTTTGGGAT 59.712 33.333 0.00 0.00 35.87 3.85
2716 3923 9.915629 CTAAAGATAGTACAAAGTTGAGACACT 57.084 33.333 0.00 0.00 0.00 3.55
2717 3924 9.694137 ACTAAAGATAGTACAAAGTTGAGACAC 57.306 33.333 0.00 0.00 40.62 3.67
2743 3950 7.437267 GTGTCTCAAGCTTAGTACAACTTTGTA 59.563 37.037 0.00 0.00 42.35 2.41
2744 3951 6.258068 GTGTCTCAAGCTTAGTACAACTTTGT 59.742 38.462 0.00 0.00 44.86 2.83
2745 3952 6.480320 AGTGTCTCAAGCTTAGTACAACTTTG 59.520 38.462 0.00 0.00 0.00 2.77
2746 3953 6.583562 AGTGTCTCAAGCTTAGTACAACTTT 58.416 36.000 0.00 0.00 0.00 2.66
2747 3954 6.163135 AGTGTCTCAAGCTTAGTACAACTT 57.837 37.500 0.00 0.00 0.00 2.66
2748 3955 5.793030 AGTGTCTCAAGCTTAGTACAACT 57.207 39.130 0.00 0.00 0.00 3.16
2749 3956 8.535690 AATAAGTGTCTCAAGCTTAGTACAAC 57.464 34.615 0.00 0.00 0.00 3.32
2750 3957 9.555727 AAAATAAGTGTCTCAAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
2751 3958 8.988934 CAAAATAAGTGTCTCAAGCTTAGTACA 58.011 33.333 0.00 0.36 0.00 2.90
2752 3959 8.443937 CCAAAATAAGTGTCTCAAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
2753 3960 7.606456 CCCAAAATAAGTGTCTCAAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
2754 3961 6.431234 CCCAAAATAAGTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
2755 3962 6.655003 TCCCAAAATAAGTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
2756 3963 6.430000 GTCCCAAAATAAGTGTCTCAAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
2757 3964 5.241728 GTCCCAAAATAAGTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
2758 3965 4.762251 GTCCCAAAATAAGTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
2759 3966 4.378459 CGTCCCAAAATAAGTGTCTCAAGC 60.378 45.833 0.00 0.00 0.00 4.01
2760 3967 4.154195 CCGTCCCAAAATAAGTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
2762 3969 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2764 3971 3.326880 ACTCCGTCCCAAAATAAGTGTCT 59.673 43.478 0.00 0.00 0.00 3.41
2769 3976 8.502105 AAAGTAATACTCCGTCCCAAAATAAG 57.498 34.615 0.00 0.00 0.00 1.73
2770 3977 7.553760 GGAAAGTAATACTCCGTCCCAAAATAA 59.446 37.037 0.00 0.00 0.00 1.40
2776 3983 3.449737 CAGGAAAGTAATACTCCGTCCCA 59.550 47.826 11.75 0.00 34.22 4.37
2777 3984 3.703052 TCAGGAAAGTAATACTCCGTCCC 59.297 47.826 11.75 2.77 34.22 4.46
2789 3996 9.656040 TGTAAAATTTATAGCGTCAGGAAAGTA 57.344 29.630 0.00 0.00 0.00 2.24
2790 3997 8.556213 TGTAAAATTTATAGCGTCAGGAAAGT 57.444 30.769 0.00 0.00 0.00 2.66
2791 3998 8.665685 ACTGTAAAATTTATAGCGTCAGGAAAG 58.334 33.333 9.03 0.00 0.00 2.62
2792 3999 8.556213 ACTGTAAAATTTATAGCGTCAGGAAA 57.444 30.769 9.03 0.00 0.00 3.13
2794 4001 7.553334 AGACTGTAAAATTTATAGCGTCAGGA 58.447 34.615 9.03 0.00 0.00 3.86
2795 4002 7.707035 AGAGACTGTAAAATTTATAGCGTCAGG 59.293 37.037 9.03 0.00 0.00 3.86
2796 4003 8.635877 AGAGACTGTAAAATTTATAGCGTCAG 57.364 34.615 9.03 3.95 0.00 3.51
2797 4004 8.248253 TGAGAGACTGTAAAATTTATAGCGTCA 58.752 33.333 9.03 5.06 0.00 4.35
2798 4005 8.630278 TGAGAGACTGTAAAATTTATAGCGTC 57.370 34.615 9.03 6.53 0.00 5.19
2799 4006 9.035607 CATGAGAGACTGTAAAATTTATAGCGT 57.964 33.333 9.03 0.00 0.00 5.07
2800 4007 9.249457 TCATGAGAGACTGTAAAATTTATAGCG 57.751 33.333 9.03 0.00 0.00 4.26
2816 7013 6.751425 CAGTAGAACACATCTTCATGAGAGAC 59.249 42.308 9.00 0.00 39.71 3.36
2820 7017 5.417811 AGCAGTAGAACACATCTTCATGAG 58.582 41.667 0.00 0.00 39.71 2.90
2885 7083 0.916358 CTCCTTGACCATGGACCCCT 60.916 60.000 21.47 0.00 32.10 4.79
2956 7154 2.472695 ATGCTTGAACAAGTCGCCTA 57.527 45.000 14.62 0.00 40.45 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.