Multiple sequence alignment - TraesCS6D01G039000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G039000 chr6D 100.000 2761 0 0 1 2761 16186567 16183807 0.000000e+00 5099.0
1 TraesCS6D01G039000 chr6D 96.809 94 3 0 405 498 251235132 251235039 1.020000e-34 158.0
2 TraesCS6D01G039000 chr6B 92.387 1169 72 5 829 1984 27923528 27922364 0.000000e+00 1650.0
3 TraesCS6D01G039000 chr6B 89.401 1236 98 20 761 1981 28015873 28017090 0.000000e+00 1526.0
4 TraesCS6D01G039000 chr6B 91.787 414 23 4 4 406 27937121 27936708 1.440000e-157 566.0
5 TraesCS6D01G039000 chr6B 93.272 327 15 4 517 842 27935829 27935509 2.490000e-130 475.0
6 TraesCS6D01G039000 chr6B 91.720 314 19 3 4 311 28013958 28014270 1.960000e-116 429.0
7 TraesCS6D01G039000 chr6B 89.575 259 16 4 517 772 28015603 28015853 4.440000e-83 318.0
8 TraesCS6D01G039000 chr6B 96.875 64 2 0 1983 2046 27922295 27922232 1.050000e-19 108.0
9 TraesCS6D01G039000 chr6B 88.372 86 9 1 323 408 28014436 28014520 4.860000e-18 102.0
10 TraesCS6D01G039000 chr6B 92.000 50 0 2 1998 2047 28017166 28017211 1.770000e-07 67.6
11 TraesCS6D01G039000 chr6A 88.036 1446 100 29 519 1931 16449796 16448391 0.000000e+00 1644.0
12 TraesCS6D01G039000 chr6A 94.545 165 7 2 1 163 16452531 16452367 1.270000e-63 254.0
13 TraesCS6D01G039000 chr6A 80.952 168 25 7 2220 2385 16447977 16447815 2.890000e-25 126.0
14 TraesCS6D01G039000 chr6A 83.582 134 17 4 2534 2667 54867506 54867378 1.340000e-23 121.0
15 TraesCS6D01G039000 chr6A 87.368 95 11 1 2596 2689 52761154 52761248 1.050000e-19 108.0
16 TraesCS6D01G039000 chr6A 100.000 41 0 0 1936 1976 16448014 16448054 2.950000e-10 76.8
17 TraesCS6D01G039000 chr2B 90.070 715 43 8 1267 1981 46590978 46590292 0.000000e+00 902.0
18 TraesCS6D01G039000 chr2B 96.970 99 2 1 1 98 46591088 46590990 6.120000e-37 165.0
19 TraesCS6D01G039000 chr2B 94.595 74 4 0 2595 2668 41493280 41493353 6.250000e-22 115.0
20 TraesCS6D01G039000 chr2B 90.625 64 3 1 1983 2046 46590267 46590207 6.340000e-12 82.4
21 TraesCS6D01G039000 chr7A 82.353 935 128 24 1005 1922 644735139 644736053 0.000000e+00 778.0
22 TraesCS6D01G039000 chr7A 83.509 758 110 10 1005 1761 644710592 644711335 0.000000e+00 693.0
23 TraesCS6D01G039000 chr7A 97.802 91 2 0 408 498 704896217 704896127 1.020000e-34 158.0
24 TraesCS6D01G039000 chr7B 81.098 947 148 24 1005 1936 608405329 608406259 0.000000e+00 728.0
25 TraesCS6D01G039000 chr7B 80.506 949 150 28 1005 1936 608380046 608380976 0.000000e+00 695.0
26 TraesCS6D01G039000 chr7D 80.638 940 155 19 1005 1930 560603169 560604095 0.000000e+00 702.0
27 TraesCS6D01G039000 chr7D 80.338 946 148 21 1005 1928 560597272 560598201 0.000000e+00 682.0
28 TraesCS6D01G039000 chr7D 83.212 137 16 7 2580 2712 604536054 604535921 4.830000e-23 119.0
29 TraesCS6D01G039000 chr7D 90.698 86 5 3 2596 2680 534673829 534673746 8.080000e-21 111.0
30 TraesCS6D01G039000 chr7D 89.773 88 6 3 2594 2679 100104103 100104017 2.910000e-20 110.0
31 TraesCS6D01G039000 chr7D 86.275 102 10 4 2596 2696 492211778 492211680 1.050000e-19 108.0
32 TraesCS6D01G039000 chr1D 89.404 151 14 2 2598 2748 465700299 465700447 3.630000e-44 189.0
33 TraesCS6D01G039000 chr1D 91.803 61 4 1 618 677 84562695 84562755 1.760000e-12 84.2
34 TraesCS6D01G039000 chr4D 97.849 93 2 0 406 498 323929671 323929579 7.910000e-36 161.0
35 TraesCS6D01G039000 chr4D 93.069 101 7 0 398 498 110080925 110081025 6.160000e-32 148.0
36 TraesCS6D01G039000 chr5D 96.774 93 3 0 405 497 521371680 521371588 3.680000e-34 156.0
37 TraesCS6D01G039000 chr5B 93.204 103 7 0 404 506 645989780 645989678 4.760000e-33 152.0
38 TraesCS6D01G039000 chr5A 92.523 107 6 2 405 509 90044754 90044648 4.760000e-33 152.0
39 TraesCS6D01G039000 chr3A 92.523 107 6 2 405 509 198036035 198035929 4.760000e-33 152.0
40 TraesCS6D01G039000 chr2A 93.939 99 6 0 400 498 587158365 587158267 1.710000e-32 150.0
41 TraesCS6D01G039000 chr3B 94.595 74 4 0 2596 2669 59715003 59714930 6.250000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G039000 chr6D 16183807 16186567 2760 True 5099.000000 5099 100.000000 1 2761 1 chr6D.!!$R1 2760
1 TraesCS6D01G039000 chr6B 27922232 27923528 1296 True 879.000000 1650 94.631000 829 2046 2 chr6B.!!$R1 1217
2 TraesCS6D01G039000 chr6B 27935509 27937121 1612 True 520.500000 566 92.529500 4 842 2 chr6B.!!$R2 838
3 TraesCS6D01G039000 chr6B 28013958 28017211 3253 False 488.520000 1526 90.213600 4 2047 5 chr6B.!!$F1 2043
4 TraesCS6D01G039000 chr6A 16447815 16452531 4716 True 674.666667 1644 87.844333 1 2385 3 chr6A.!!$R2 2384
5 TraesCS6D01G039000 chr2B 46590207 46591088 881 True 383.133333 902 92.555000 1 2046 3 chr2B.!!$R1 2045
6 TraesCS6D01G039000 chr7A 644735139 644736053 914 False 778.000000 778 82.353000 1005 1922 1 chr7A.!!$F2 917
7 TraesCS6D01G039000 chr7A 644710592 644711335 743 False 693.000000 693 83.509000 1005 1761 1 chr7A.!!$F1 756
8 TraesCS6D01G039000 chr7B 608405329 608406259 930 False 728.000000 728 81.098000 1005 1936 1 chr7B.!!$F2 931
9 TraesCS6D01G039000 chr7B 608380046 608380976 930 False 695.000000 695 80.506000 1005 1936 1 chr7B.!!$F1 931
10 TraesCS6D01G039000 chr7D 560603169 560604095 926 False 702.000000 702 80.638000 1005 1930 1 chr7D.!!$F2 925
11 TraesCS6D01G039000 chr7D 560597272 560598201 929 False 682.000000 682 80.338000 1005 1928 1 chr7D.!!$F1 923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 4154 0.327924 TTGATCCTGCCGTCCAATGT 59.672 50.000 0.0 0.0 0.0 2.71 F
1299 4808 1.063190 TCTTCTTCTCCGGCCTCCATA 60.063 52.381 0.0 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1664 5173 0.03601 CAGGCTCCGATCCAAACACT 60.036 55.0 0.00 0.0 0.0 3.55 R
2289 6048 0.17902 CCTGCTCGATTATGGGCCAA 60.179 55.0 11.89 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 61 7.540474 AGAGAAAAGTCTGTGTAGGATACAA 57.460 36.000 0.00 0.00 43.88 2.41
179 183 9.996554 TCAAAGGTATATATAGGTGTGATTGTG 57.003 33.333 0.00 0.00 0.00 3.33
193 197 2.886523 TGATTGTGCCTGTTTTCCTCTG 59.113 45.455 0.00 0.00 0.00 3.35
209 213 3.840666 TCCTCTGCATTAACTTGGACTCT 59.159 43.478 0.00 0.00 0.00 3.24
246 256 1.069296 ACCGCACGATGATTTTGTGTG 60.069 47.619 0.00 0.00 45.93 3.82
263 278 1.737236 TGTGGTTGCGATGTTGCTATC 59.263 47.619 0.00 0.00 35.36 2.08
278 293 8.970691 ATGTTGCTATCAGAACACATTAAAAC 57.029 30.769 0.00 0.00 34.98 2.43
324 341 4.647853 AGTGAGTGTACTGTGTAACCAAGA 59.352 41.667 0.00 0.00 34.36 3.02
370 541 2.268298 CATTACTTTCCTGGTCGACGG 58.732 52.381 9.92 6.30 0.00 4.79
393 564 6.262273 CGGTATGGCTTTGATATGGTAACTTT 59.738 38.462 0.00 0.00 37.61 2.66
394 565 7.425606 GGTATGGCTTTGATATGGTAACTTTG 58.574 38.462 0.00 0.00 37.61 2.77
417 865 3.454812 GCCCTTCTGTAATACTTCCTCCA 59.545 47.826 0.00 0.00 0.00 3.86
421 869 5.221742 CCTTCTGTAATACTTCCTCCATCCC 60.222 48.000 0.00 0.00 0.00 3.85
422 870 4.890988 TCTGTAATACTTCCTCCATCCCA 58.109 43.478 0.00 0.00 0.00 4.37
428 876 8.561769 TGTAATACTTCCTCCATCCCAAAATAA 58.438 33.333 0.00 0.00 0.00 1.40
429 877 9.067986 GTAATACTTCCTCCATCCCAAAATAAG 57.932 37.037 0.00 0.00 0.00 1.73
434 882 4.540099 TCCTCCATCCCAAAATAAGTGTCT 59.460 41.667 0.00 0.00 0.00 3.41
435 883 4.884164 CCTCCATCCCAAAATAAGTGTCTC 59.116 45.833 0.00 0.00 0.00 3.36
437 885 5.886609 TCCATCCCAAAATAAGTGTCTCAA 58.113 37.500 0.00 0.00 0.00 3.02
438 886 5.710099 TCCATCCCAAAATAAGTGTCTCAAC 59.290 40.000 0.00 0.00 0.00 3.18
439 887 5.711976 CCATCCCAAAATAAGTGTCTCAACT 59.288 40.000 0.00 0.00 0.00 3.16
440 888 6.209391 CCATCCCAAAATAAGTGTCTCAACTT 59.791 38.462 0.00 0.00 42.89 2.66
441 889 7.255942 CCATCCCAAAATAAGTGTCTCAACTTT 60.256 37.037 0.00 0.00 40.77 2.66
442 890 7.038154 TCCCAAAATAAGTGTCTCAACTTTG 57.962 36.000 0.00 0.00 40.77 2.77
443 891 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
444 892 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
445 893 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
446 894 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
454 902 9.915629 AGTGTCTCAACTTTGTACTATCTTTAG 57.084 33.333 0.00 0.00 0.00 1.85
455 903 9.694137 GTGTCTCAACTTTGTACTATCTTTAGT 57.306 33.333 0.00 0.00 41.57 2.24
481 929 6.258068 ACAAAGTTGTACTAAGCTTGAGACAC 59.742 38.462 9.86 7.18 40.16 3.67
482 930 5.793030 AGTTGTACTAAGCTTGAGACACT 57.207 39.130 9.86 7.29 0.00 3.55
488 936 9.555727 TTGTACTAAGCTTGAGACACTTATTTT 57.444 29.630 9.86 0.00 0.00 1.82
489 937 8.988934 TGTACTAAGCTTGAGACACTTATTTTG 58.011 33.333 9.86 0.00 0.00 2.44
513 961 4.367386 ACGGAGTATTACTTTCCTGACG 57.633 45.455 0.00 0.00 41.94 4.35
514 962 3.114065 CGGAGTATTACTTTCCTGACGC 58.886 50.000 0.00 0.00 0.00 5.19
515 963 3.181489 CGGAGTATTACTTTCCTGACGCT 60.181 47.826 0.00 0.00 0.00 5.07
528 3964 8.665685 ACTTTCCTGACGCTATAAATTTTACAG 58.334 33.333 0.00 0.00 0.00 2.74
532 3968 7.705325 TCCTGACGCTATAAATTTTACAGTCTC 59.295 37.037 0.00 3.48 0.00 3.36
550 3987 6.435591 ACAGTCTCTCATGAAGATGTGTTCTA 59.564 38.462 0.00 0.00 33.05 2.10
597 4034 1.377202 GACGCAAGGCCATCCTGAA 60.377 57.895 5.01 0.00 43.40 3.02
668 4105 5.607939 TCTTGGTCGTTGTGGATATGTAT 57.392 39.130 0.00 0.00 0.00 2.29
715 4152 2.442236 ATTTGATCCTGCCGTCCAAT 57.558 45.000 0.00 0.00 0.00 3.16
716 4153 1.462616 TTTGATCCTGCCGTCCAATG 58.537 50.000 0.00 0.00 0.00 2.82
717 4154 0.327924 TTGATCCTGCCGTCCAATGT 59.672 50.000 0.00 0.00 0.00 2.71
807 4287 4.348168 ACATCACAAGACTTGTTCCTACCT 59.652 41.667 18.27 0.00 43.23 3.08
826 4312 9.705103 TCCTACCTAACCCATGTATATACATAC 57.295 37.037 24.50 0.00 44.57 2.39
852 4338 2.750814 TGACACTATGGCAGGATCTCA 58.249 47.619 0.00 0.00 28.05 3.27
894 4382 7.011389 TCCATTATTGTTTAGAGATCGCAGTTG 59.989 37.037 0.00 0.00 0.00 3.16
912 4406 1.285023 GAAGCAGCACAGCAACCAG 59.715 57.895 0.00 0.00 36.85 4.00
969 4463 3.002348 GTGTCAACACTGCTTGGTAACTC 59.998 47.826 6.03 0.00 43.25 3.01
978 4472 4.202182 ACTGCTTGGTAACTCGTTTCAGTA 60.202 41.667 0.00 0.00 31.40 2.74
979 4473 4.053295 TGCTTGGTAACTCGTTTCAGTAC 58.947 43.478 0.00 0.00 37.61 2.73
989 4485 2.535166 TCGTTTCAGTACGGTGAAAACG 59.465 45.455 18.42 18.42 45.65 3.60
992 4488 2.886862 TCAGTACGGTGAAAACGGAA 57.113 45.000 0.00 0.00 35.23 4.30
994 4490 3.731089 TCAGTACGGTGAAAACGGAAAT 58.269 40.909 0.00 0.00 35.23 2.17
995 4491 4.880759 TCAGTACGGTGAAAACGGAAATA 58.119 39.130 0.00 0.00 35.23 1.40
996 4492 4.925054 TCAGTACGGTGAAAACGGAAATAG 59.075 41.667 0.00 0.00 35.23 1.73
997 4493 4.925054 CAGTACGGTGAAAACGGAAATAGA 59.075 41.667 0.00 0.00 35.23 1.98
998 4494 4.925646 AGTACGGTGAAAACGGAAATAGAC 59.074 41.667 0.00 0.00 35.23 2.59
999 4495 3.731089 ACGGTGAAAACGGAAATAGACA 58.269 40.909 0.00 0.00 35.23 3.41
1117 4613 1.284982 CTTCTGTGTCGCGGACAAGG 61.285 60.000 6.13 6.12 44.49 3.61
1299 4808 1.063190 TCTTCTTCTCCGGCCTCCATA 60.063 52.381 0.00 0.00 0.00 2.74
1331 4840 3.741476 GCCAACAAGCAGGGCTCG 61.741 66.667 0.00 0.00 44.32 5.03
1362 4871 2.086426 GTCAACGTCGCGCAGATCA 61.086 57.895 8.75 0.00 0.00 2.92
1664 5173 1.447140 GATCACGGTAGCCAACGCA 60.447 57.895 0.00 0.00 37.52 5.24
1778 5290 1.921243 AAAAAGTCTTGTGTTGCGGC 58.079 45.000 0.00 0.00 0.00 6.53
1804 5337 7.524531 CGTTTGTTTGTTTGTTTGTTGAAGTAC 59.475 33.333 0.00 0.00 0.00 2.73
1850 5392 5.127356 TGGATTGCATTGCATGTTCTTCATA 59.873 36.000 12.95 0.00 38.76 2.15
1892 5437 9.736023 GGATTTTTAATCCTCATGTGTATGTTC 57.264 33.333 10.48 0.00 35.73 3.18
1951 5503 6.311200 CACCTCTATTTGTTTATTGCAAAGGC 59.689 38.462 1.71 0.00 38.91 4.35
1991 5696 3.505680 TGTCATTATTTTTCTGCCGCTGT 59.494 39.130 0.00 0.00 0.00 4.40
2047 5752 2.554032 GGACCTCACAAATCCAAGTGTG 59.446 50.000 0.00 0.00 45.29 3.82
2048 5753 3.214328 GACCTCACAAATCCAAGTGTGT 58.786 45.455 3.92 0.00 44.45 3.72
2050 5755 2.951642 CCTCACAAATCCAAGTGTGTGT 59.048 45.455 3.92 0.00 44.45 3.72
2051 5756 3.243168 CCTCACAAATCCAAGTGTGTGTG 60.243 47.826 3.92 0.00 44.45 3.82
2052 5757 3.351740 TCACAAATCCAAGTGTGTGTGT 58.648 40.909 3.92 0.00 44.45 3.72
2053 5758 4.518249 TCACAAATCCAAGTGTGTGTGTA 58.482 39.130 3.92 0.00 44.45 2.90
2054 5759 4.334203 TCACAAATCCAAGTGTGTGTGTAC 59.666 41.667 3.92 0.00 44.45 2.90
2056 5761 4.887071 ACAAATCCAAGTGTGTGTGTACAT 59.113 37.500 0.00 0.00 39.39 2.29
2057 5762 5.214417 CAAATCCAAGTGTGTGTGTACATG 58.786 41.667 0.00 0.00 39.39 3.21
2058 5763 2.217750 TCCAAGTGTGTGTGTACATGC 58.782 47.619 0.00 0.00 39.39 4.06
2059 5764 1.946081 CCAAGTGTGTGTGTACATGCA 59.054 47.619 0.00 0.00 39.39 3.96
2061 5766 3.548616 CCAAGTGTGTGTGTACATGCAAG 60.549 47.826 0.00 0.00 39.39 4.01
2062 5767 1.603802 AGTGTGTGTGTACATGCAAGC 59.396 47.619 0.00 0.00 39.39 4.01
2064 5769 2.033299 GTGTGTGTGTACATGCAAGCTT 59.967 45.455 0.00 0.00 39.39 3.74
2065 5770 3.249799 GTGTGTGTGTACATGCAAGCTTA 59.750 43.478 0.00 0.00 39.39 3.09
2066 5771 3.879892 TGTGTGTGTACATGCAAGCTTAA 59.120 39.130 0.00 0.00 39.39 1.85
2067 5772 4.336713 TGTGTGTGTACATGCAAGCTTAAA 59.663 37.500 0.00 0.00 39.39 1.52
2068 5773 4.675114 GTGTGTGTACATGCAAGCTTAAAC 59.325 41.667 0.00 0.00 39.39 2.01
2069 5774 4.578516 TGTGTGTACATGCAAGCTTAAACT 59.421 37.500 0.00 0.00 0.00 2.66
2070 5775 4.911610 GTGTGTACATGCAAGCTTAAACTG 59.088 41.667 0.00 0.00 0.00 3.16
2074 5779 4.756084 ACATGCAAGCTTAAACTGAGTC 57.244 40.909 0.00 0.00 0.00 3.36
2075 5780 4.392940 ACATGCAAGCTTAAACTGAGTCT 58.607 39.130 0.00 0.00 0.00 3.24
2076 5781 4.453819 ACATGCAAGCTTAAACTGAGTCTC 59.546 41.667 0.00 0.00 0.00 3.36
2078 5783 3.060602 GCAAGCTTAAACTGAGTCTCGT 58.939 45.455 0.00 0.00 0.00 4.18
2080 5785 4.684703 GCAAGCTTAAACTGAGTCTCGTTA 59.315 41.667 0.00 0.18 0.00 3.18
2081 5786 5.164041 GCAAGCTTAAACTGAGTCTCGTTAG 60.164 44.000 0.00 6.70 0.00 2.34
2082 5787 4.487019 AGCTTAAACTGAGTCTCGTTAGC 58.513 43.478 16.33 16.33 0.00 3.09
2085 5790 5.348997 GCTTAAACTGAGTCTCGTTAGCAAT 59.651 40.000 17.78 6.06 29.53 3.56
2086 5791 6.530534 GCTTAAACTGAGTCTCGTTAGCAATA 59.469 38.462 17.78 5.43 29.53 1.90
2088 5793 6.952935 AAACTGAGTCTCGTTAGCAATAAG 57.047 37.500 9.48 0.00 0.00 1.73
2102 5807 4.443850 GCAATAAGCGTGTGTAGATGAG 57.556 45.455 0.00 0.00 0.00 2.90
2103 5808 3.246226 GCAATAAGCGTGTGTAGATGAGG 59.754 47.826 0.00 0.00 0.00 3.86
2104 5809 3.735237 ATAAGCGTGTGTAGATGAGGG 57.265 47.619 0.00 0.00 0.00 4.30
2105 5810 1.557099 AAGCGTGTGTAGATGAGGGA 58.443 50.000 0.00 0.00 0.00 4.20
2108 5813 1.927895 CGTGTGTAGATGAGGGAAGC 58.072 55.000 0.00 0.00 0.00 3.86
2109 5814 1.478510 CGTGTGTAGATGAGGGAAGCT 59.521 52.381 0.00 0.00 0.00 3.74
2110 5815 2.736719 CGTGTGTAGATGAGGGAAGCTG 60.737 54.545 0.00 0.00 0.00 4.24
2111 5816 2.234908 GTGTGTAGATGAGGGAAGCTGT 59.765 50.000 0.00 0.00 0.00 4.40
2112 5817 2.234661 TGTGTAGATGAGGGAAGCTGTG 59.765 50.000 0.00 0.00 0.00 3.66
2114 5819 3.055819 GTGTAGATGAGGGAAGCTGTGAA 60.056 47.826 0.00 0.00 0.00 3.18
2117 5822 2.575279 AGATGAGGGAAGCTGTGAACAT 59.425 45.455 0.00 0.00 0.00 2.71
2118 5823 2.189594 TGAGGGAAGCTGTGAACATG 57.810 50.000 0.00 0.00 0.00 3.21
2119 5824 1.271543 TGAGGGAAGCTGTGAACATGG 60.272 52.381 0.00 0.00 0.00 3.66
2133 5892 1.331214 ACATGGCAAGTTTGGTCAGG 58.669 50.000 0.00 0.00 0.00 3.86
2134 5893 0.604578 CATGGCAAGTTTGGTCAGGG 59.395 55.000 0.00 0.00 0.00 4.45
2138 5897 2.978010 AAGTTTGGTCAGGGCGCG 60.978 61.111 0.00 0.00 0.00 6.86
2145 5904 2.340328 GGTCAGGGCGCGGATTTTT 61.340 57.895 8.83 0.00 0.00 1.94
2165 5924 1.181786 TTTTTAGGGCATTCAGGGCG 58.818 50.000 0.00 0.00 0.00 6.13
2166 5925 1.319614 TTTTAGGGCATTCAGGGCGC 61.320 55.000 0.00 0.00 43.74 6.53
2169 5928 4.802051 GGGCATTCAGGGCGCTGA 62.802 66.667 27.90 27.90 40.63 4.26
2170 5929 2.517875 GGCATTCAGGGCGCTGAT 60.518 61.111 31.24 19.09 32.91 2.90
2171 5930 2.123428 GGCATTCAGGGCGCTGATT 61.123 57.895 31.24 24.84 32.91 2.57
2172 5931 1.669999 GGCATTCAGGGCGCTGATTT 61.670 55.000 31.24 19.92 32.91 2.17
2173 5932 0.174162 GCATTCAGGGCGCTGATTTT 59.826 50.000 31.24 17.60 32.91 1.82
2174 5933 1.404583 GCATTCAGGGCGCTGATTTTT 60.405 47.619 31.24 15.33 32.91 1.94
2192 5951 0.316841 TTTTTGGACAATCAGGGCGC 59.683 50.000 0.00 0.00 0.00 6.53
2193 5952 0.539438 TTTTGGACAATCAGGGCGCT 60.539 50.000 7.64 0.00 0.00 5.92
2194 5953 1.243342 TTTGGACAATCAGGGCGCTG 61.243 55.000 23.98 23.98 0.00 5.18
2195 5954 2.045926 GGACAATCAGGGCGCTGT 60.046 61.111 27.76 11.69 0.00 4.40
2196 5955 1.675641 GGACAATCAGGGCGCTGTT 60.676 57.895 27.76 18.51 0.00 3.16
2197 5956 1.244019 GGACAATCAGGGCGCTGTTT 61.244 55.000 27.76 22.91 0.00 2.83
2198 5957 0.598065 GACAATCAGGGCGCTGTTTT 59.402 50.000 27.76 19.72 0.00 2.43
2199 5958 1.000274 GACAATCAGGGCGCTGTTTTT 60.000 47.619 27.76 19.34 0.00 1.94
2225 5984 3.161866 GGGCAGTTTTTACAATCAGGGA 58.838 45.455 0.00 0.00 0.00 4.20
2229 5988 4.616835 GCAGTTTTTACAATCAGGGAGCTG 60.617 45.833 0.00 0.00 0.00 4.24
2258 6017 2.182842 CCCGCAGCAGGATACAAGC 61.183 63.158 4.99 0.00 39.82 4.01
2259 6018 1.450134 CCGCAGCAGGATACAAGCA 60.450 57.895 0.00 0.00 41.70 3.91
2289 6048 0.036306 CAAGGACGCCCTAAACAGGT 59.964 55.000 0.00 0.00 43.48 4.00
2302 6061 1.762708 AACAGGTTGGCCCATAATCG 58.237 50.000 0.00 0.00 34.66 3.34
2303 6062 0.916086 ACAGGTTGGCCCATAATCGA 59.084 50.000 0.00 0.00 34.66 3.59
2315 6074 3.244215 CCCATAATCGAGCAGGTACATGT 60.244 47.826 9.57 2.69 0.00 3.21
2317 6076 4.923871 CCATAATCGAGCAGGTACATGTAC 59.076 45.833 25.00 25.00 35.40 2.90
2321 6080 2.823747 TCGAGCAGGTACATGTACAGTT 59.176 45.455 31.52 22.44 37.78 3.16
2325 6084 5.614668 CGAGCAGGTACATGTACAGTTTTTG 60.615 44.000 31.52 20.34 37.78 2.44
2328 6087 6.768861 AGCAGGTACATGTACAGTTTTTGTTA 59.231 34.615 31.52 0.00 41.29 2.41
2329 6088 7.447238 AGCAGGTACATGTACAGTTTTTGTTAT 59.553 33.333 31.52 11.04 41.29 1.89
2330 6089 8.079809 GCAGGTACATGTACAGTTTTTGTTATT 58.920 33.333 31.52 3.75 41.29 1.40
2339 6098 9.220767 TGTACAGTTTTTGTTATTTTTGCCTTT 57.779 25.926 0.00 0.00 41.29 3.11
2495 6254 9.691362 AGTGTAATCACAAAAATTGTTGATACC 57.309 29.630 15.43 6.91 46.01 2.73
2496 6255 9.469807 GTGTAATCACAAAAATTGTTGATACCA 57.530 29.630 15.43 1.63 43.23 3.25
2497 6256 9.469807 TGTAATCACAAAAATTGTTGATACCAC 57.530 29.630 15.43 7.55 43.23 4.16
2498 6257 9.691362 GTAATCACAAAAATTGTTGATACCACT 57.309 29.630 15.43 0.00 43.23 4.00
2530 6289 7.697352 TTCATGACATTCAAAACATGTTCAC 57.303 32.000 12.39 0.00 40.32 3.18
2531 6290 6.803642 TCATGACATTCAAAACATGTTCACA 58.196 32.000 12.39 4.38 40.32 3.58
2532 6291 6.696583 TCATGACATTCAAAACATGTTCACAC 59.303 34.615 12.39 0.00 40.32 3.82
2533 6292 5.958955 TGACATTCAAAACATGTTCACACA 58.041 33.333 12.39 2.44 34.89 3.72
2534 6293 6.571605 TGACATTCAAAACATGTTCACACAT 58.428 32.000 12.39 0.00 45.18 3.21
2535 6294 7.040494 TGACATTCAAAACATGTTCACACATT 58.960 30.769 12.39 0.00 41.16 2.71
2536 6295 7.548427 TGACATTCAAAACATGTTCACACATTT 59.452 29.630 12.39 0.00 41.16 2.32
2537 6296 7.908230 ACATTCAAAACATGTTCACACATTTC 58.092 30.769 12.39 0.00 41.16 2.17
2538 6297 7.548427 ACATTCAAAACATGTTCACACATTTCA 59.452 29.630 12.39 0.00 41.16 2.69
2539 6298 7.895975 TTCAAAACATGTTCACACATTTCAA 57.104 28.000 12.39 0.00 41.16 2.69
2540 6299 7.895975 TCAAAACATGTTCACACATTTCAAA 57.104 28.000 12.39 0.00 41.16 2.69
2541 6300 8.315391 TCAAAACATGTTCACACATTTCAAAA 57.685 26.923 12.39 0.00 41.16 2.44
2542 6301 8.944029 TCAAAACATGTTCACACATTTCAAAAT 58.056 25.926 12.39 0.00 41.16 1.82
2547 6306 9.545105 ACATGTTCACACATTTCAAAATAATGT 57.455 25.926 0.00 0.00 41.16 2.71
2550 6309 9.175060 TGTTCACACATTTCAAAATAATGTACG 57.825 29.630 0.00 0.00 42.63 3.67
2551 6310 9.176181 GTTCACACATTTCAAAATAATGTACGT 57.824 29.630 0.00 0.00 42.63 3.57
2552 6311 8.720909 TCACACATTTCAAAATAATGTACGTG 57.279 30.769 0.00 0.00 42.63 4.49
2553 6312 8.560374 TCACACATTTCAAAATAATGTACGTGA 58.440 29.630 13.38 13.38 42.63 4.35
2554 6313 9.340695 CACACATTTCAAAATAATGTACGTGAT 57.659 29.630 0.00 0.00 42.63 3.06
2651 6410 8.997323 ACTATATTATTTCTCTTGACATGCAGC 58.003 33.333 0.00 0.00 0.00 5.25
2652 6411 4.970662 TTATTTCTCTTGACATGCAGCC 57.029 40.909 0.00 0.00 0.00 4.85
2653 6412 2.574006 TTTCTCTTGACATGCAGCCT 57.426 45.000 0.00 0.00 0.00 4.58
2654 6413 3.701205 TTTCTCTTGACATGCAGCCTA 57.299 42.857 0.00 0.00 0.00 3.93
2655 6414 3.920231 TTCTCTTGACATGCAGCCTAT 57.080 42.857 0.00 0.00 0.00 2.57
2656 6415 3.465742 TCTCTTGACATGCAGCCTATC 57.534 47.619 0.00 0.00 0.00 2.08
2657 6416 3.036819 TCTCTTGACATGCAGCCTATCT 58.963 45.455 0.00 0.00 0.00 1.98
2658 6417 4.218312 TCTCTTGACATGCAGCCTATCTA 58.782 43.478 0.00 0.00 0.00 1.98
2659 6418 4.038522 TCTCTTGACATGCAGCCTATCTAC 59.961 45.833 0.00 0.00 0.00 2.59
2660 6419 3.706086 TCTTGACATGCAGCCTATCTACA 59.294 43.478 0.00 0.00 0.00 2.74
2661 6420 4.346127 TCTTGACATGCAGCCTATCTACAT 59.654 41.667 0.00 0.00 0.00 2.29
2662 6421 4.263018 TGACATGCAGCCTATCTACATC 57.737 45.455 0.00 0.00 0.00 3.06
2663 6422 3.642848 TGACATGCAGCCTATCTACATCA 59.357 43.478 0.00 0.00 0.00 3.07
2664 6423 4.285260 TGACATGCAGCCTATCTACATCAT 59.715 41.667 0.00 0.00 0.00 2.45
2665 6424 4.829968 ACATGCAGCCTATCTACATCATC 58.170 43.478 0.00 0.00 0.00 2.92
2666 6425 4.285260 ACATGCAGCCTATCTACATCATCA 59.715 41.667 0.00 0.00 0.00 3.07
2667 6426 4.961438 TGCAGCCTATCTACATCATCAA 57.039 40.909 0.00 0.00 0.00 2.57
2668 6427 5.294734 TGCAGCCTATCTACATCATCAAA 57.705 39.130 0.00 0.00 0.00 2.69
2669 6428 5.872963 TGCAGCCTATCTACATCATCAAAT 58.127 37.500 0.00 0.00 0.00 2.32
2670 6429 7.008021 TGCAGCCTATCTACATCATCAAATA 57.992 36.000 0.00 0.00 0.00 1.40
2671 6430 7.101700 TGCAGCCTATCTACATCATCAAATAG 58.898 38.462 0.00 0.00 0.00 1.73
2672 6431 7.102346 GCAGCCTATCTACATCATCAAATAGT 58.898 38.462 0.00 0.00 0.00 2.12
2673 6432 7.277539 GCAGCCTATCTACATCATCAAATAGTC 59.722 40.741 0.00 0.00 0.00 2.59
2674 6433 8.530311 CAGCCTATCTACATCATCAAATAGTCT 58.470 37.037 0.00 0.00 0.00 3.24
2675 6434 8.748412 AGCCTATCTACATCATCAAATAGTCTC 58.252 37.037 0.00 0.00 0.00 3.36
2676 6435 8.526978 GCCTATCTACATCATCAAATAGTCTCA 58.473 37.037 0.00 0.00 0.00 3.27
2677 6436 9.853555 CCTATCTACATCATCAAATAGTCTCAC 57.146 37.037 0.00 0.00 0.00 3.51
2680 6439 9.708092 ATCTACATCATCAAATAGTCTCACATG 57.292 33.333 0.00 0.00 0.00 3.21
2681 6440 6.615264 ACATCATCAAATAGTCTCACATGC 57.385 37.500 0.00 0.00 0.00 4.06
2682 6441 6.117488 ACATCATCAAATAGTCTCACATGCA 58.883 36.000 0.00 0.00 0.00 3.96
2683 6442 6.600427 ACATCATCAAATAGTCTCACATGCAA 59.400 34.615 0.00 0.00 0.00 4.08
2684 6443 7.121611 ACATCATCAAATAGTCTCACATGCAAA 59.878 33.333 0.00 0.00 0.00 3.68
2685 6444 7.451501 TCATCAAATAGTCTCACATGCAAAA 57.548 32.000 0.00 0.00 0.00 2.44
2686 6445 7.884257 TCATCAAATAGTCTCACATGCAAAAA 58.116 30.769 0.00 0.00 0.00 1.94
2687 6446 8.525316 TCATCAAATAGTCTCACATGCAAAAAT 58.475 29.630 0.00 0.00 0.00 1.82
2688 6447 9.791820 CATCAAATAGTCTCACATGCAAAAATA 57.208 29.630 0.00 0.00 0.00 1.40
2690 6449 9.013229 TCAAATAGTCTCACATGCAAAAATAGT 57.987 29.630 0.00 0.00 0.00 2.12
2691 6450 9.630098 CAAATAGTCTCACATGCAAAAATAGTT 57.370 29.630 0.00 0.00 0.00 2.24
2694 6453 9.846248 ATAGTCTCACATGCAAAAATAGTTTTC 57.154 29.630 0.00 0.00 34.64 2.29
2695 6454 7.147976 AGTCTCACATGCAAAAATAGTTTTCC 58.852 34.615 0.00 0.00 34.64 3.13
2696 6455 6.366061 GTCTCACATGCAAAAATAGTTTTCCC 59.634 38.462 0.00 0.00 34.64 3.97
2697 6456 5.546526 TCACATGCAAAAATAGTTTTCCCC 58.453 37.500 0.00 0.00 34.64 4.81
2698 6457 5.306678 TCACATGCAAAAATAGTTTTCCCCT 59.693 36.000 0.00 0.00 34.64 4.79
2699 6458 5.639082 CACATGCAAAAATAGTTTTCCCCTC 59.361 40.000 0.00 0.00 34.64 4.30
2700 6459 5.543790 ACATGCAAAAATAGTTTTCCCCTCT 59.456 36.000 0.00 0.00 34.64 3.69
2701 6460 5.722021 TGCAAAAATAGTTTTCCCCTCTC 57.278 39.130 0.00 0.00 34.64 3.20
2702 6461 5.144100 TGCAAAAATAGTTTTCCCCTCTCA 58.856 37.500 0.00 0.00 34.64 3.27
2703 6462 5.010617 TGCAAAAATAGTTTTCCCCTCTCAC 59.989 40.000 0.00 0.00 34.64 3.51
2704 6463 5.243954 GCAAAAATAGTTTTCCCCTCTCACT 59.756 40.000 0.00 0.00 34.64 3.41
2705 6464 6.433093 GCAAAAATAGTTTTCCCCTCTCACTA 59.567 38.462 0.00 0.00 34.64 2.74
2706 6465 7.039993 GCAAAAATAGTTTTCCCCTCTCACTAA 60.040 37.037 0.00 0.00 34.64 2.24
2707 6466 7.997773 AAAATAGTTTTCCCCTCTCACTAAC 57.002 36.000 0.00 0.00 0.00 2.34
2708 6467 5.695424 ATAGTTTTCCCCTCTCACTAACC 57.305 43.478 0.00 0.00 0.00 2.85
2709 6468 3.599348 AGTTTTCCCCTCTCACTAACCT 58.401 45.455 0.00 0.00 0.00 3.50
2710 6469 3.981375 AGTTTTCCCCTCTCACTAACCTT 59.019 43.478 0.00 0.00 0.00 3.50
2711 6470 4.041815 AGTTTTCCCCTCTCACTAACCTTC 59.958 45.833 0.00 0.00 0.00 3.46
2712 6471 1.848652 TCCCCTCTCACTAACCTTCG 58.151 55.000 0.00 0.00 0.00 3.79
2713 6472 1.076677 TCCCCTCTCACTAACCTTCGT 59.923 52.381 0.00 0.00 0.00 3.85
2714 6473 1.900486 CCCCTCTCACTAACCTTCGTT 59.100 52.381 0.00 0.00 35.90 3.85
2715 6474 2.353803 CCCCTCTCACTAACCTTCGTTG 60.354 54.545 0.00 0.00 33.17 4.10
2716 6475 2.561419 CCCTCTCACTAACCTTCGTTGA 59.439 50.000 0.00 0.00 33.17 3.18
2717 6476 3.195825 CCCTCTCACTAACCTTCGTTGAT 59.804 47.826 0.00 0.00 33.17 2.57
2718 6477 4.425520 CCTCTCACTAACCTTCGTTGATC 58.574 47.826 0.00 0.00 33.17 2.92
2719 6478 4.425520 CTCTCACTAACCTTCGTTGATCC 58.574 47.826 0.00 0.00 33.17 3.36
2720 6479 3.830178 TCTCACTAACCTTCGTTGATCCA 59.170 43.478 0.00 0.00 33.17 3.41
2721 6480 4.082190 TCTCACTAACCTTCGTTGATCCAG 60.082 45.833 0.00 0.00 33.17 3.86
2722 6481 3.830178 TCACTAACCTTCGTTGATCCAGA 59.170 43.478 0.00 0.00 33.17 3.86
2723 6482 4.282449 TCACTAACCTTCGTTGATCCAGAA 59.718 41.667 0.00 0.00 33.17 3.02
2724 6483 5.046591 TCACTAACCTTCGTTGATCCAGAAT 60.047 40.000 0.00 0.00 33.17 2.40
2725 6484 5.292101 CACTAACCTTCGTTGATCCAGAATC 59.708 44.000 0.00 0.00 33.17 2.52
2726 6485 3.268023 ACCTTCGTTGATCCAGAATCC 57.732 47.619 0.00 0.00 33.01 3.01
2727 6486 2.571653 ACCTTCGTTGATCCAGAATCCA 59.428 45.455 0.00 0.00 33.01 3.41
2728 6487 3.009033 ACCTTCGTTGATCCAGAATCCAA 59.991 43.478 0.00 0.00 33.01 3.53
2729 6488 4.009675 CCTTCGTTGATCCAGAATCCAAA 58.990 43.478 0.00 0.00 33.01 3.28
2730 6489 4.458989 CCTTCGTTGATCCAGAATCCAAAA 59.541 41.667 0.00 0.00 33.01 2.44
2731 6490 5.392380 CCTTCGTTGATCCAGAATCCAAAAG 60.392 44.000 0.00 0.00 33.01 2.27
2732 6491 3.440173 TCGTTGATCCAGAATCCAAAAGC 59.560 43.478 0.00 0.00 33.01 3.51
2733 6492 3.428045 CGTTGATCCAGAATCCAAAAGCC 60.428 47.826 0.00 0.00 33.01 4.35
2734 6493 3.454719 TGATCCAGAATCCAAAAGCCA 57.545 42.857 0.00 0.00 33.01 4.75
2735 6494 3.091545 TGATCCAGAATCCAAAAGCCAC 58.908 45.455 0.00 0.00 33.01 5.01
2736 6495 2.673775 TCCAGAATCCAAAAGCCACA 57.326 45.000 0.00 0.00 0.00 4.17
2737 6496 3.173953 TCCAGAATCCAAAAGCCACAT 57.826 42.857 0.00 0.00 0.00 3.21
2738 6497 4.314522 TCCAGAATCCAAAAGCCACATA 57.685 40.909 0.00 0.00 0.00 2.29
2739 6498 4.870636 TCCAGAATCCAAAAGCCACATAT 58.129 39.130 0.00 0.00 0.00 1.78
2740 6499 4.889409 TCCAGAATCCAAAAGCCACATATC 59.111 41.667 0.00 0.00 0.00 1.63
2741 6500 4.891756 CCAGAATCCAAAAGCCACATATCT 59.108 41.667 0.00 0.00 0.00 1.98
2742 6501 5.009410 CCAGAATCCAAAAGCCACATATCTC 59.991 44.000 0.00 0.00 0.00 2.75
2743 6502 5.826737 CAGAATCCAAAAGCCACATATCTCT 59.173 40.000 0.00 0.00 0.00 3.10
2744 6503 5.826737 AGAATCCAAAAGCCACATATCTCTG 59.173 40.000 0.00 0.00 0.00 3.35
2745 6504 4.842531 TCCAAAAGCCACATATCTCTGA 57.157 40.909 0.00 0.00 0.00 3.27
2746 6505 5.178096 TCCAAAAGCCACATATCTCTGAA 57.822 39.130 0.00 0.00 0.00 3.02
2747 6506 5.188434 TCCAAAAGCCACATATCTCTGAAG 58.812 41.667 0.00 0.00 0.00 3.02
2748 6507 4.946157 CCAAAAGCCACATATCTCTGAAGT 59.054 41.667 0.00 0.00 0.00 3.01
2749 6508 5.163683 CCAAAAGCCACATATCTCTGAAGTG 60.164 44.000 0.00 0.00 0.00 3.16
2750 6509 3.191078 AGCCACATATCTCTGAAGTGC 57.809 47.619 0.00 0.00 0.00 4.40
2751 6510 2.502947 AGCCACATATCTCTGAAGTGCA 59.497 45.455 0.00 0.00 0.00 4.57
2752 6511 3.136077 AGCCACATATCTCTGAAGTGCAT 59.864 43.478 0.00 0.00 0.00 3.96
2753 6512 3.497640 GCCACATATCTCTGAAGTGCATC 59.502 47.826 0.00 0.00 0.00 3.91
2754 6513 4.743045 GCCACATATCTCTGAAGTGCATCT 60.743 45.833 0.00 0.00 0.00 2.90
2755 6514 5.366460 CCACATATCTCTGAAGTGCATCTT 58.634 41.667 0.00 0.00 39.32 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
179 183 3.507622 AGTTAATGCAGAGGAAAACAGGC 59.492 43.478 0.00 0.00 0.00 4.85
193 197 3.858247 ACGGTAGAGTCCAAGTTAATGC 58.142 45.455 0.00 0.00 0.00 3.56
209 213 1.539929 CGGTGGGTACAAACAACGGTA 60.540 52.381 12.33 0.00 43.58 4.02
246 256 2.279741 TCTGATAGCAACATCGCAACC 58.720 47.619 0.00 0.00 0.00 3.77
324 341 7.337167 GCTATCAACAGGATGGATGAGATATT 58.663 38.462 0.00 0.00 43.62 1.28
370 541 7.425606 CCAAAGTTACCATATCAAAGCCATAC 58.574 38.462 0.00 0.00 0.00 2.39
393 564 3.454812 GAGGAAGTATTACAGAAGGGCCA 59.545 47.826 6.18 0.00 0.00 5.36
394 565 3.181453 GGAGGAAGTATTACAGAAGGGCC 60.181 52.174 0.00 0.00 0.00 5.80
417 865 7.287696 ACAAAGTTGAGACACTTATTTTGGGAT 59.712 33.333 0.00 0.00 35.87 3.85
428 876 9.915629 CTAAAGATAGTACAAAGTTGAGACACT 57.084 33.333 0.00 0.00 0.00 3.55
429 877 9.694137 ACTAAAGATAGTACAAAGTTGAGACAC 57.306 33.333 0.00 0.00 40.62 3.67
455 903 7.437267 GTGTCTCAAGCTTAGTACAACTTTGTA 59.563 37.037 0.00 0.00 42.35 2.41
456 904 6.258068 GTGTCTCAAGCTTAGTACAACTTTGT 59.742 38.462 0.00 0.00 44.86 2.83
457 905 6.480320 AGTGTCTCAAGCTTAGTACAACTTTG 59.520 38.462 0.00 0.00 0.00 2.77
458 906 6.583562 AGTGTCTCAAGCTTAGTACAACTTT 58.416 36.000 0.00 0.00 0.00 2.66
459 907 6.163135 AGTGTCTCAAGCTTAGTACAACTT 57.837 37.500 0.00 0.00 0.00 2.66
460 908 5.793030 AGTGTCTCAAGCTTAGTACAACT 57.207 39.130 0.00 0.00 0.00 3.16
461 909 8.535690 AATAAGTGTCTCAAGCTTAGTACAAC 57.464 34.615 0.00 0.00 0.00 3.32
462 910 9.555727 AAAATAAGTGTCTCAAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
463 911 8.988934 CAAAATAAGTGTCTCAAGCTTAGTACA 58.011 33.333 0.00 0.36 0.00 2.90
464 912 8.443937 CCAAAATAAGTGTCTCAAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
465 913 7.606456 CCCAAAATAAGTGTCTCAAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
466 914 6.431234 CCCAAAATAAGTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
467 915 6.655003 TCCCAAAATAAGTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
468 916 6.430000 GTCCCAAAATAAGTGTCTCAAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
469 917 5.241728 GTCCCAAAATAAGTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
470 918 4.762251 GTCCCAAAATAAGTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
471 919 4.378459 CGTCCCAAAATAAGTGTCTCAAGC 60.378 45.833 0.00 0.00 0.00 4.01
472 920 4.154195 CCGTCCCAAAATAAGTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
474 922 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
476 924 3.326880 ACTCCGTCCCAAAATAAGTGTCT 59.673 43.478 0.00 0.00 0.00 3.41
481 929 8.502105 AAAGTAATACTCCGTCCCAAAATAAG 57.498 34.615 0.00 0.00 0.00 1.73
482 930 7.553760 GGAAAGTAATACTCCGTCCCAAAATAA 59.446 37.037 0.00 0.00 0.00 1.40
488 936 3.449737 CAGGAAAGTAATACTCCGTCCCA 59.550 47.826 11.75 0.00 34.22 4.37
489 937 3.703052 TCAGGAAAGTAATACTCCGTCCC 59.297 47.826 11.75 2.77 34.22 4.46
501 949 9.656040 TGTAAAATTTATAGCGTCAGGAAAGTA 57.344 29.630 0.00 0.00 0.00 2.24
502 950 8.556213 TGTAAAATTTATAGCGTCAGGAAAGT 57.444 30.769 0.00 0.00 0.00 2.66
503 951 8.665685 ACTGTAAAATTTATAGCGTCAGGAAAG 58.334 33.333 9.03 0.00 0.00 2.62
504 952 8.556213 ACTGTAAAATTTATAGCGTCAGGAAA 57.444 30.769 9.03 0.00 0.00 3.13
506 954 7.553334 AGACTGTAAAATTTATAGCGTCAGGA 58.447 34.615 9.03 0.00 0.00 3.86
507 955 7.707035 AGAGACTGTAAAATTTATAGCGTCAGG 59.293 37.037 9.03 0.00 0.00 3.86
508 956 8.635877 AGAGACTGTAAAATTTATAGCGTCAG 57.364 34.615 9.03 3.95 0.00 3.51
509 957 8.248253 TGAGAGACTGTAAAATTTATAGCGTCA 58.752 33.333 9.03 5.06 0.00 4.35
510 958 8.630278 TGAGAGACTGTAAAATTTATAGCGTC 57.370 34.615 9.03 6.53 0.00 5.19
511 959 9.035607 CATGAGAGACTGTAAAATTTATAGCGT 57.964 33.333 9.03 0.00 0.00 5.07
512 960 9.249457 TCATGAGAGACTGTAAAATTTATAGCG 57.751 33.333 9.03 0.00 0.00 4.26
528 3964 6.751425 CAGTAGAACACATCTTCATGAGAGAC 59.249 42.308 9.00 0.00 39.71 3.36
532 3968 5.417811 AGCAGTAGAACACATCTTCATGAG 58.582 41.667 0.00 0.00 39.71 2.90
597 4034 0.916358 CTCCTTGACCATGGACCCCT 60.916 60.000 21.47 0.00 32.10 4.79
668 4105 2.472695 ATGCTTGAACAAGTCGCCTA 57.527 45.000 14.62 0.00 40.45 3.93
826 4312 4.341366 TCCTGCCATAGTGTCATGTATG 57.659 45.455 0.00 0.00 0.00 2.39
894 4382 1.285023 CTGGTTGCTGTGCTGCTTC 59.715 57.895 0.00 0.00 0.00 3.86
912 4406 3.873805 GCTGTCAAGCTTTGGGAAC 57.126 52.632 0.00 0.00 46.60 3.62
931 4425 0.033504 ACACTGGTAGGAACGTGCTG 59.966 55.000 0.00 0.00 0.00 4.41
969 4463 2.347846 CCGTTTTCACCGTACTGAAACG 60.348 50.000 9.20 11.00 39.37 3.60
978 4472 3.731089 TGTCTATTTCCGTTTTCACCGT 58.269 40.909 0.00 0.00 0.00 4.83
979 4473 4.735662 TTGTCTATTTCCGTTTTCACCG 57.264 40.909 0.00 0.00 0.00 4.94
989 4485 2.733956 TGGCCACCATTGTCTATTTCC 58.266 47.619 0.00 0.00 0.00 3.13
1104 4600 2.028484 GACACCTTGTCCGCGACA 59.972 61.111 8.23 7.57 41.37 4.35
1117 4613 3.428045 GCATTGGCATTACCTTGAGACAC 60.428 47.826 0.00 0.00 40.72 3.67
1265 4774 0.894184 AGAAGAAGTCCTCGGCGACA 60.894 55.000 4.99 0.00 35.07 4.35
1362 4871 2.360350 CATGGTGTTGAGCCCGCT 60.360 61.111 0.00 0.00 0.00 5.52
1664 5173 0.036010 CAGGCTCCGATCCAAACACT 60.036 55.000 0.00 0.00 0.00 3.55
1778 5290 6.414890 ACTTCAACAAACAAACAAACAAACG 58.585 32.000 0.00 0.00 0.00 3.60
2047 5752 4.911610 CAGTTTAAGCTTGCATGTACACAC 59.088 41.667 9.86 0.00 0.00 3.82
2048 5753 4.819088 TCAGTTTAAGCTTGCATGTACACA 59.181 37.500 9.86 0.00 0.00 3.72
2050 5755 5.063204 ACTCAGTTTAAGCTTGCATGTACA 58.937 37.500 9.86 0.00 0.00 2.90
2051 5756 5.409826 AGACTCAGTTTAAGCTTGCATGTAC 59.590 40.000 9.86 0.00 0.00 2.90
2052 5757 5.551233 AGACTCAGTTTAAGCTTGCATGTA 58.449 37.500 9.86 0.00 0.00 2.29
2053 5758 4.392940 AGACTCAGTTTAAGCTTGCATGT 58.607 39.130 9.86 0.00 0.00 3.21
2054 5759 4.435253 CGAGACTCAGTTTAAGCTTGCATG 60.435 45.833 9.86 2.89 0.00 4.06
2056 5761 3.059884 CGAGACTCAGTTTAAGCTTGCA 58.940 45.455 9.86 0.00 0.00 4.08
2057 5762 3.060602 ACGAGACTCAGTTTAAGCTTGC 58.939 45.455 9.86 0.00 0.00 4.01
2058 5763 5.164041 GCTAACGAGACTCAGTTTAAGCTTG 60.164 44.000 9.86 0.00 32.32 4.01
2059 5764 4.924462 GCTAACGAGACTCAGTTTAAGCTT 59.076 41.667 17.91 3.48 32.32 3.74
2061 5766 4.235360 TGCTAACGAGACTCAGTTTAAGC 58.765 43.478 18.14 18.14 34.37 3.09
2062 5767 6.952935 ATTGCTAACGAGACTCAGTTTAAG 57.047 37.500 14.76 10.02 0.00 1.85
2064 5769 6.530534 GCTTATTGCTAACGAGACTCAGTTTA 59.469 38.462 14.76 3.89 38.95 2.01
2065 5770 5.348997 GCTTATTGCTAACGAGACTCAGTTT 59.651 40.000 14.76 3.04 38.95 2.66
2066 5771 4.865365 GCTTATTGCTAACGAGACTCAGTT 59.135 41.667 14.22 14.22 38.95 3.16
2067 5772 4.425520 GCTTATTGCTAACGAGACTCAGT 58.574 43.478 2.82 0.00 38.95 3.41
2068 5773 3.483922 CGCTTATTGCTAACGAGACTCAG 59.516 47.826 2.82 0.00 40.11 3.35
2069 5774 3.119602 ACGCTTATTGCTAACGAGACTCA 60.120 43.478 2.82 0.00 40.11 3.41
2070 5775 3.240861 CACGCTTATTGCTAACGAGACTC 59.759 47.826 0.00 0.00 40.11 3.36
2074 5779 2.666508 ACACACGCTTATTGCTAACGAG 59.333 45.455 0.00 0.00 40.11 4.18
2075 5780 2.679450 ACACACGCTTATTGCTAACGA 58.321 42.857 0.00 0.00 40.11 3.85
2076 5781 3.855379 TCTACACACGCTTATTGCTAACG 59.145 43.478 0.00 0.00 40.11 3.18
2078 5783 5.656480 TCATCTACACACGCTTATTGCTAA 58.344 37.500 0.00 0.00 40.11 3.09
2080 5785 4.115516 CTCATCTACACACGCTTATTGCT 58.884 43.478 0.00 0.00 40.11 3.91
2081 5786 3.246226 CCTCATCTACACACGCTTATTGC 59.754 47.826 0.00 0.00 38.57 3.56
2082 5787 3.804325 CCCTCATCTACACACGCTTATTG 59.196 47.826 0.00 0.00 0.00 1.90
2085 5790 2.730382 TCCCTCATCTACACACGCTTA 58.270 47.619 0.00 0.00 0.00 3.09
2086 5791 1.557099 TCCCTCATCTACACACGCTT 58.443 50.000 0.00 0.00 0.00 4.68
2088 5793 1.927895 CTTCCCTCATCTACACACGC 58.072 55.000 0.00 0.00 0.00 5.34
2090 5795 2.234908 ACAGCTTCCCTCATCTACACAC 59.765 50.000 0.00 0.00 0.00 3.82
2092 5797 2.497675 TCACAGCTTCCCTCATCTACAC 59.502 50.000 0.00 0.00 0.00 2.90
2094 5799 3.055819 TGTTCACAGCTTCCCTCATCTAC 60.056 47.826 0.00 0.00 0.00 2.59
2096 5801 1.980765 TGTTCACAGCTTCCCTCATCT 59.019 47.619 0.00 0.00 0.00 2.90
2098 5803 2.619849 CCATGTTCACAGCTTCCCTCAT 60.620 50.000 0.00 0.00 0.00 2.90
2100 5805 1.457346 CCATGTTCACAGCTTCCCTC 58.543 55.000 0.00 0.00 0.00 4.30
2101 5806 0.610232 GCCATGTTCACAGCTTCCCT 60.610 55.000 0.00 0.00 0.00 4.20
2102 5807 0.895100 TGCCATGTTCACAGCTTCCC 60.895 55.000 0.00 0.00 0.00 3.97
2103 5808 0.961019 TTGCCATGTTCACAGCTTCC 59.039 50.000 0.00 0.00 0.00 3.46
2104 5809 1.610522 ACTTGCCATGTTCACAGCTTC 59.389 47.619 0.00 0.00 0.00 3.86
2105 5810 1.696063 ACTTGCCATGTTCACAGCTT 58.304 45.000 0.00 0.00 0.00 3.74
2108 5813 2.101249 ACCAAACTTGCCATGTTCACAG 59.899 45.455 0.00 0.00 0.00 3.66
2109 5814 2.100584 GACCAAACTTGCCATGTTCACA 59.899 45.455 0.00 0.00 0.00 3.58
2110 5815 2.100584 TGACCAAACTTGCCATGTTCAC 59.899 45.455 0.00 0.00 0.00 3.18
2111 5816 2.361757 CTGACCAAACTTGCCATGTTCA 59.638 45.455 0.00 0.00 0.00 3.18
2112 5817 2.288395 CCTGACCAAACTTGCCATGTTC 60.288 50.000 0.00 0.00 0.00 3.18
2114 5819 1.331214 CCTGACCAAACTTGCCATGT 58.669 50.000 0.00 0.00 0.00 3.21
2117 5822 1.832167 GCCCTGACCAAACTTGCCA 60.832 57.895 0.00 0.00 0.00 4.92
2118 5823 2.919494 CGCCCTGACCAAACTTGCC 61.919 63.158 0.00 0.00 0.00 4.52
2119 5824 2.644992 CGCCCTGACCAAACTTGC 59.355 61.111 0.00 0.00 0.00 4.01
2149 5908 2.124320 GCGCCCTGAATGCCCTAA 60.124 61.111 0.00 0.00 0.00 2.69
2151 5910 4.809496 CAGCGCCCTGAATGCCCT 62.809 66.667 2.29 0.00 41.77 5.19
2152 5911 4.802051 TCAGCGCCCTGAATGCCC 62.802 66.667 2.29 0.00 44.79 5.36
2173 5932 0.316841 GCGCCCTGATTGTCCAAAAA 59.683 50.000 0.00 0.00 0.00 1.94
2174 5933 0.539438 AGCGCCCTGATTGTCCAAAA 60.539 50.000 2.29 0.00 0.00 2.44
2175 5934 1.074775 AGCGCCCTGATTGTCCAAA 59.925 52.632 2.29 0.00 0.00 3.28
2176 5935 1.675310 CAGCGCCCTGATTGTCCAA 60.675 57.895 2.29 0.00 41.77 3.53
2177 5936 2.046023 CAGCGCCCTGATTGTCCA 60.046 61.111 2.29 0.00 41.77 4.02
2178 5937 1.244019 AAACAGCGCCCTGATTGTCC 61.244 55.000 2.29 0.00 41.77 4.02
2179 5938 0.598065 AAAACAGCGCCCTGATTGTC 59.402 50.000 2.29 0.00 41.77 3.18
2180 5939 1.039856 AAAAACAGCGCCCTGATTGT 58.960 45.000 2.29 0.00 41.77 2.71
2181 5940 3.892200 AAAAACAGCGCCCTGATTG 57.108 47.368 2.29 0.00 41.77 2.67
2198 5957 7.213678 CCTGATTGTAAAAACTGCCCTAAAAA 58.786 34.615 0.00 0.00 0.00 1.94
2199 5958 6.239458 CCCTGATTGTAAAAACTGCCCTAAAA 60.239 38.462 0.00 0.00 0.00 1.52
2200 5959 5.245075 CCCTGATTGTAAAAACTGCCCTAAA 59.755 40.000 0.00 0.00 0.00 1.85
2201 5960 4.770010 CCCTGATTGTAAAAACTGCCCTAA 59.230 41.667 0.00 0.00 0.00 2.69
2202 5961 4.043561 TCCCTGATTGTAAAAACTGCCCTA 59.956 41.667 0.00 0.00 0.00 3.53
2203 5962 3.165071 CCCTGATTGTAAAAACTGCCCT 58.835 45.455 0.00 0.00 0.00 5.19
2204 5963 3.161866 TCCCTGATTGTAAAAACTGCCC 58.838 45.455 0.00 0.00 0.00 5.36
2205 5964 3.367395 GCTCCCTGATTGTAAAAACTGCC 60.367 47.826 0.00 0.00 0.00 4.85
2206 5965 3.507622 AGCTCCCTGATTGTAAAAACTGC 59.492 43.478 0.00 0.00 0.00 4.40
2207 5966 4.761739 TCAGCTCCCTGATTGTAAAAACTG 59.238 41.667 0.00 0.00 42.98 3.16
2208 5967 4.985538 TCAGCTCCCTGATTGTAAAAACT 58.014 39.130 0.00 0.00 42.98 2.66
2225 5984 2.581354 GGGCGAGACACATCAGCT 59.419 61.111 0.00 0.00 33.06 4.24
2229 5988 2.887568 CTGCGGGCGAGACACATC 60.888 66.667 0.00 0.00 0.00 3.06
2247 6006 1.550065 CGAGACGTGCTTGTATCCTG 58.450 55.000 0.00 0.00 0.00 3.86
2248 6007 0.179134 GCGAGACGTGCTTGTATCCT 60.179 55.000 0.00 0.00 0.00 3.24
2249 6008 1.146358 GGCGAGACGTGCTTGTATCC 61.146 60.000 0.00 0.00 0.00 2.59
2258 6017 1.444553 GTCCTTGAGGCGAGACGTG 60.445 63.158 0.00 0.00 34.44 4.49
2259 6018 2.963371 GTCCTTGAGGCGAGACGT 59.037 61.111 0.00 0.00 34.44 4.34
2289 6048 0.179020 CCTGCTCGATTATGGGCCAA 60.179 55.000 11.89 0.00 0.00 4.52
2302 6061 5.238650 ACAAAAACTGTACATGTACCTGCTC 59.761 40.000 28.67 7.64 36.10 4.26
2303 6062 5.130350 ACAAAAACTGTACATGTACCTGCT 58.870 37.500 28.67 13.18 36.10 4.24
2469 6228 9.691362 GGTATCAACAATTTTTGTGATTACACT 57.309 29.630 4.35 0.00 44.59 3.55
2470 6229 9.469807 TGGTATCAACAATTTTTGTGATTACAC 57.530 29.630 4.35 0.00 44.59 2.90
2471 6230 9.469807 GTGGTATCAACAATTTTTGTGATTACA 57.530 29.630 4.35 0.00 44.59 2.41
2472 6231 9.691362 AGTGGTATCAACAATTTTTGTGATTAC 57.309 29.630 4.35 3.69 44.59 1.89
2504 6263 9.409312 GTGAACATGTTTTGAATGTCATGAATA 57.591 29.630 13.36 0.00 39.68 1.75
2505 6264 7.927092 TGTGAACATGTTTTGAATGTCATGAAT 59.073 29.630 13.36 0.00 39.68 2.57
2506 6265 7.222417 GTGTGAACATGTTTTGAATGTCATGAA 59.778 33.333 13.36 0.00 39.68 2.57
2507 6266 6.696583 GTGTGAACATGTTTTGAATGTCATGA 59.303 34.615 13.36 0.00 39.68 3.07
2508 6267 6.476053 TGTGTGAACATGTTTTGAATGTCATG 59.524 34.615 13.36 0.00 42.00 3.07
2509 6268 6.571605 TGTGTGAACATGTTTTGAATGTCAT 58.428 32.000 13.36 0.00 37.27 3.06
2510 6269 5.958955 TGTGTGAACATGTTTTGAATGTCA 58.041 33.333 13.36 0.09 37.27 3.58
2511 6270 7.467557 AATGTGTGAACATGTTTTGAATGTC 57.532 32.000 13.36 0.00 37.27 3.06
2512 6271 7.548427 TGAAATGTGTGAACATGTTTTGAATGT 59.452 29.630 13.36 0.00 39.95 2.71
2513 6272 7.907194 TGAAATGTGTGAACATGTTTTGAATG 58.093 30.769 13.36 0.00 0.00 2.67
2514 6273 8.489990 TTGAAATGTGTGAACATGTTTTGAAT 57.510 26.923 13.36 1.08 0.00 2.57
2515 6274 7.895975 TTGAAATGTGTGAACATGTTTTGAA 57.104 28.000 13.36 0.00 0.00 2.69
2516 6275 7.895975 TTTGAAATGTGTGAACATGTTTTGA 57.104 28.000 13.36 0.00 0.00 2.69
2521 6280 9.545105 ACATTATTTTGAAATGTGTGAACATGT 57.455 25.926 0.00 0.00 43.96 3.21
2524 6283 9.175060 CGTACATTATTTTGAAATGTGTGAACA 57.825 29.630 10.81 0.00 44.94 3.18
2525 6284 9.176181 ACGTACATTATTTTGAAATGTGTGAAC 57.824 29.630 10.81 1.92 44.94 3.18
2526 6285 9.175060 CACGTACATTATTTTGAAATGTGTGAA 57.825 29.630 10.81 0.00 44.94 3.18
2527 6286 8.560374 TCACGTACATTATTTTGAAATGTGTGA 58.440 29.630 13.61 13.61 44.94 3.58
2528 6287 8.720909 TCACGTACATTATTTTGAAATGTGTG 57.279 30.769 10.81 10.74 44.94 3.82
2625 6384 8.997323 GCTGCATGTCAAGAGAAATAATATAGT 58.003 33.333 0.00 0.00 0.00 2.12
2626 6385 8.449397 GGCTGCATGTCAAGAGAAATAATATAG 58.551 37.037 0.50 0.00 0.00 1.31
2627 6386 8.159447 AGGCTGCATGTCAAGAGAAATAATATA 58.841 33.333 0.50 0.00 0.00 0.86
2628 6387 7.002879 AGGCTGCATGTCAAGAGAAATAATAT 58.997 34.615 0.50 0.00 0.00 1.28
2629 6388 6.359804 AGGCTGCATGTCAAGAGAAATAATA 58.640 36.000 0.50 0.00 0.00 0.98
2630 6389 5.198965 AGGCTGCATGTCAAGAGAAATAAT 58.801 37.500 0.50 0.00 0.00 1.28
2631 6390 4.592942 AGGCTGCATGTCAAGAGAAATAA 58.407 39.130 0.50 0.00 0.00 1.40
2632 6391 4.226427 AGGCTGCATGTCAAGAGAAATA 57.774 40.909 0.50 0.00 0.00 1.40
2633 6392 3.083122 AGGCTGCATGTCAAGAGAAAT 57.917 42.857 0.50 0.00 0.00 2.17
2634 6393 2.574006 AGGCTGCATGTCAAGAGAAA 57.426 45.000 0.50 0.00 0.00 2.52
2635 6394 3.453717 AGATAGGCTGCATGTCAAGAGAA 59.546 43.478 13.29 0.00 0.00 2.87
2636 6395 3.036819 AGATAGGCTGCATGTCAAGAGA 58.963 45.455 13.29 0.00 0.00 3.10
2637 6396 3.472283 AGATAGGCTGCATGTCAAGAG 57.528 47.619 13.29 0.00 0.00 2.85
2638 6397 3.706086 TGTAGATAGGCTGCATGTCAAGA 59.294 43.478 13.29 0.00 34.08 3.02
2639 6398 4.063998 TGTAGATAGGCTGCATGTCAAG 57.936 45.455 13.29 0.00 34.08 3.02
2640 6399 4.694760 ATGTAGATAGGCTGCATGTCAA 57.305 40.909 13.29 0.00 46.40 3.18
2646 6405 4.961438 TTGATGATGTAGATAGGCTGCA 57.039 40.909 0.50 0.00 43.53 4.41
2647 6406 7.102346 ACTATTTGATGATGTAGATAGGCTGC 58.898 38.462 0.00 0.00 0.00 5.25
2648 6407 8.530311 AGACTATTTGATGATGTAGATAGGCTG 58.470 37.037 0.00 0.00 34.91 4.85
2649 6408 8.663209 AGACTATTTGATGATGTAGATAGGCT 57.337 34.615 0.00 0.00 32.13 4.58
2650 6409 8.526978 TGAGACTATTTGATGATGTAGATAGGC 58.473 37.037 0.00 0.00 0.00 3.93
2651 6410 9.853555 GTGAGACTATTTGATGATGTAGATAGG 57.146 37.037 0.00 0.00 0.00 2.57
2654 6413 9.708092 CATGTGAGACTATTTGATGATGTAGAT 57.292 33.333 0.00 0.00 0.00 1.98
2655 6414 7.654923 GCATGTGAGACTATTTGATGATGTAGA 59.345 37.037 0.00 0.00 0.00 2.59
2656 6415 7.440255 TGCATGTGAGACTATTTGATGATGTAG 59.560 37.037 0.00 0.00 0.00 2.74
2657 6416 7.274447 TGCATGTGAGACTATTTGATGATGTA 58.726 34.615 0.00 0.00 0.00 2.29
2658 6417 6.117488 TGCATGTGAGACTATTTGATGATGT 58.883 36.000 0.00 0.00 0.00 3.06
2659 6418 6.613755 TGCATGTGAGACTATTTGATGATG 57.386 37.500 0.00 0.00 0.00 3.07
2660 6419 7.634671 TTTGCATGTGAGACTATTTGATGAT 57.365 32.000 0.00 0.00 0.00 2.45
2661 6420 7.451501 TTTTGCATGTGAGACTATTTGATGA 57.548 32.000 0.00 0.00 0.00 2.92
2662 6421 8.697846 ATTTTTGCATGTGAGACTATTTGATG 57.302 30.769 0.00 0.00 0.00 3.07
2664 6423 9.013229 ACTATTTTTGCATGTGAGACTATTTGA 57.987 29.630 0.00 0.00 0.00 2.69
2665 6424 9.630098 AACTATTTTTGCATGTGAGACTATTTG 57.370 29.630 0.00 0.00 0.00 2.32
2668 6427 9.846248 GAAAACTATTTTTGCATGTGAGACTAT 57.154 29.630 0.00 0.00 34.94 2.12
2669 6428 8.296713 GGAAAACTATTTTTGCATGTGAGACTA 58.703 33.333 5.15 0.00 41.43 2.59
2670 6429 7.147976 GGAAAACTATTTTTGCATGTGAGACT 58.852 34.615 5.15 0.00 41.43 3.24
2671 6430 6.366061 GGGAAAACTATTTTTGCATGTGAGAC 59.634 38.462 11.03 0.00 43.07 3.36
2672 6431 6.454795 GGGAAAACTATTTTTGCATGTGAGA 58.545 36.000 11.03 0.00 43.07 3.27
2673 6432 5.639082 GGGGAAAACTATTTTTGCATGTGAG 59.361 40.000 11.03 0.00 43.07 3.51
2674 6433 5.306678 AGGGGAAAACTATTTTTGCATGTGA 59.693 36.000 11.03 0.00 43.07 3.58
2675 6434 5.550290 AGGGGAAAACTATTTTTGCATGTG 58.450 37.500 11.03 0.00 43.07 3.21
2676 6435 5.543790 AGAGGGGAAAACTATTTTTGCATGT 59.456 36.000 11.03 0.00 43.07 3.21
2677 6436 6.041423 AGAGGGGAAAACTATTTTTGCATG 57.959 37.500 11.03 0.00 43.07 4.06
2678 6437 5.779771 TGAGAGGGGAAAACTATTTTTGCAT 59.220 36.000 11.03 0.65 43.07 3.96
2679 6438 5.010617 GTGAGAGGGGAAAACTATTTTTGCA 59.989 40.000 11.03 0.00 43.07 4.08
2680 6439 5.243954 AGTGAGAGGGGAAAACTATTTTTGC 59.756 40.000 1.78 1.78 41.15 3.68
2681 6440 6.901081 AGTGAGAGGGGAAAACTATTTTTG 57.099 37.500 0.00 0.00 34.94 2.44
2682 6441 7.450634 GGTTAGTGAGAGGGGAAAACTATTTTT 59.549 37.037 0.00 0.00 37.65 1.94
2683 6442 6.946583 GGTTAGTGAGAGGGGAAAACTATTTT 59.053 38.462 0.00 0.00 35.12 1.82
2684 6443 6.274908 AGGTTAGTGAGAGGGGAAAACTATTT 59.725 38.462 0.00 0.00 0.00 1.40
2685 6444 5.791141 AGGTTAGTGAGAGGGGAAAACTATT 59.209 40.000 0.00 0.00 0.00 1.73
2686 6445 5.351405 AGGTTAGTGAGAGGGGAAAACTAT 58.649 41.667 0.00 0.00 0.00 2.12
2687 6446 4.759953 AGGTTAGTGAGAGGGGAAAACTA 58.240 43.478 0.00 0.00 0.00 2.24
2688 6447 3.599348 AGGTTAGTGAGAGGGGAAAACT 58.401 45.455 0.00 0.00 0.00 2.66
2689 6448 4.325119 GAAGGTTAGTGAGAGGGGAAAAC 58.675 47.826 0.00 0.00 0.00 2.43
2690 6449 3.007614 CGAAGGTTAGTGAGAGGGGAAAA 59.992 47.826 0.00 0.00 0.00 2.29
2691 6450 2.565834 CGAAGGTTAGTGAGAGGGGAAA 59.434 50.000 0.00 0.00 0.00 3.13
2692 6451 2.176889 CGAAGGTTAGTGAGAGGGGAA 58.823 52.381 0.00 0.00 0.00 3.97
2693 6452 1.076677 ACGAAGGTTAGTGAGAGGGGA 59.923 52.381 0.00 0.00 0.00 4.81
2694 6453 1.558233 ACGAAGGTTAGTGAGAGGGG 58.442 55.000 0.00 0.00 0.00 4.79
2695 6454 2.561419 TCAACGAAGGTTAGTGAGAGGG 59.439 50.000 0.00 0.00 33.72 4.30
2696 6455 3.936372 TCAACGAAGGTTAGTGAGAGG 57.064 47.619 0.00 0.00 33.72 3.69
2697 6456 4.082190 TGGATCAACGAAGGTTAGTGAGAG 60.082 45.833 0.00 0.00 33.72 3.20
2698 6457 3.830178 TGGATCAACGAAGGTTAGTGAGA 59.170 43.478 0.00 0.00 33.72 3.27
2699 6458 4.082190 TCTGGATCAACGAAGGTTAGTGAG 60.082 45.833 0.00 0.00 33.72 3.51
2700 6459 3.830178 TCTGGATCAACGAAGGTTAGTGA 59.170 43.478 0.00 0.00 33.72 3.41
2701 6460 4.188247 TCTGGATCAACGAAGGTTAGTG 57.812 45.455 0.00 0.00 33.72 2.74
2702 6461 4.884668 TTCTGGATCAACGAAGGTTAGT 57.115 40.909 0.00 0.00 33.72 2.24
2703 6462 4.811557 GGATTCTGGATCAACGAAGGTTAG 59.188 45.833 0.00 0.00 36.43 2.34
2704 6463 4.224147 TGGATTCTGGATCAACGAAGGTTA 59.776 41.667 0.00 0.00 36.43 2.85
2705 6464 3.009033 TGGATTCTGGATCAACGAAGGTT 59.991 43.478 0.00 0.00 36.43 3.50
2706 6465 2.571653 TGGATTCTGGATCAACGAAGGT 59.428 45.455 0.00 0.00 36.43 3.50
2707 6466 3.266510 TGGATTCTGGATCAACGAAGG 57.733 47.619 0.00 0.00 36.43 3.46
2708 6467 5.627499 TTTTGGATTCTGGATCAACGAAG 57.373 39.130 0.00 0.00 36.43 3.79
2709 6468 4.082787 GCTTTTGGATTCTGGATCAACGAA 60.083 41.667 0.00 0.00 36.43 3.85
2710 6469 3.440173 GCTTTTGGATTCTGGATCAACGA 59.560 43.478 0.00 0.00 36.43 3.85
2711 6470 3.428045 GGCTTTTGGATTCTGGATCAACG 60.428 47.826 0.00 0.00 36.43 4.10
2712 6471 3.511146 TGGCTTTTGGATTCTGGATCAAC 59.489 43.478 0.00 0.00 36.43 3.18
2713 6472 3.511146 GTGGCTTTTGGATTCTGGATCAA 59.489 43.478 0.00 0.00 36.43 2.57
2714 6473 3.091545 GTGGCTTTTGGATTCTGGATCA 58.908 45.455 0.00 0.00 36.43 2.92
2715 6474 3.091545 TGTGGCTTTTGGATTCTGGATC 58.908 45.455 0.00 0.00 0.00 3.36
2716 6475 3.173953 TGTGGCTTTTGGATTCTGGAT 57.826 42.857 0.00 0.00 0.00 3.41
2717 6476 2.673775 TGTGGCTTTTGGATTCTGGA 57.326 45.000 0.00 0.00 0.00 3.86
2718 6477 4.891756 AGATATGTGGCTTTTGGATTCTGG 59.108 41.667 0.00 0.00 0.00 3.86
2719 6478 5.826737 AGAGATATGTGGCTTTTGGATTCTG 59.173 40.000 0.00 0.00 0.00 3.02
2720 6479 5.826737 CAGAGATATGTGGCTTTTGGATTCT 59.173 40.000 0.00 0.00 0.00 2.40
2721 6480 5.824624 TCAGAGATATGTGGCTTTTGGATTC 59.175 40.000 0.00 0.00 0.00 2.52
2722 6481 5.759059 TCAGAGATATGTGGCTTTTGGATT 58.241 37.500 0.00 0.00 0.00 3.01
2723 6482 5.378230 TCAGAGATATGTGGCTTTTGGAT 57.622 39.130 0.00 0.00 0.00 3.41
2724 6483 4.842531 TCAGAGATATGTGGCTTTTGGA 57.157 40.909 0.00 0.00 0.00 3.53
2725 6484 4.946157 ACTTCAGAGATATGTGGCTTTTGG 59.054 41.667 0.00 0.00 0.00 3.28
2726 6485 5.675575 GCACTTCAGAGATATGTGGCTTTTG 60.676 44.000 0.00 0.00 0.00 2.44
2727 6486 4.397417 GCACTTCAGAGATATGTGGCTTTT 59.603 41.667 0.00 0.00 0.00 2.27
2728 6487 3.944015 GCACTTCAGAGATATGTGGCTTT 59.056 43.478 0.00 0.00 0.00 3.51
2729 6488 3.054875 TGCACTTCAGAGATATGTGGCTT 60.055 43.478 0.00 0.00 0.00 4.35
2730 6489 2.502947 TGCACTTCAGAGATATGTGGCT 59.497 45.455 0.00 0.00 0.00 4.75
2731 6490 2.910199 TGCACTTCAGAGATATGTGGC 58.090 47.619 0.00 0.00 0.00 5.01
2732 6491 4.958509 AGATGCACTTCAGAGATATGTGG 58.041 43.478 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.