Multiple sequence alignment - TraesCS6D01G038600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G038600 chr6D 100.000 2978 0 0 1 2978 16145331 16142354 0.000000e+00 5500.0
1 TraesCS6D01G038600 chr6D 91.579 95 5 1 520 611 16151838 16151744 8.660000e-26 128.0
2 TraesCS6D01G038600 chr6A 90.495 1778 103 31 626 2357 16444816 16443059 0.000000e+00 2287.0
3 TraesCS6D01G038600 chr6A 93.675 585 32 3 2396 2978 16442677 16442096 0.000000e+00 870.0
4 TraesCS6D01G038600 chr6A 94.081 321 17 2 2530 2848 447834890 447834570 1.240000e-133 486.0
5 TraesCS6D01G038600 chr6A 86.307 241 19 8 2311 2539 447838520 447838282 1.770000e-62 250.0
6 TraesCS6D01G038600 chr6B 88.570 1671 121 30 623 2267 27904416 27902790 0.000000e+00 1964.0
7 TraesCS6D01G038600 chr6B 89.240 1552 112 32 660 2177 28063078 28064608 0.000000e+00 1890.0
8 TraesCS6D01G038600 chr6B 83.140 172 20 6 2814 2978 266758900 266758731 6.650000e-32 148.0
9 TraesCS6D01G038600 chr3D 89.441 322 28 4 2660 2978 227174644 227174962 4.620000e-108 401.0
10 TraesCS6D01G038600 chr3D 77.477 333 58 14 1185 1510 81689805 81690127 1.820000e-42 183.0
11 TraesCS6D01G038600 chr1B 92.580 283 16 3 2697 2977 529317254 529317533 4.620000e-108 401.0
12 TraesCS6D01G038600 chr1B 86.239 109 8 2 2750 2852 653530126 653530233 8.730000e-21 111.0
13 TraesCS6D01G038600 chr3B 78.664 614 100 19 1318 1921 111668956 111669548 2.170000e-101 379.0
14 TraesCS6D01G038600 chr3B 88.889 99 10 1 2358 2456 728289280 728289183 1.450000e-23 121.0
15 TraesCS6D01G038600 chr3A 88.050 318 30 4 2663 2978 619775368 619775679 1.300000e-98 370.0
16 TraesCS6D01G038600 chr3A 76.305 249 35 18 1185 1424 95941026 95941259 8.730000e-21 111.0
17 TraesCS6D01G038600 chr5A 77.859 411 74 13 1116 1522 457511690 457512087 3.840000e-59 239.0
18 TraesCS6D01G038600 chr5A 76.368 402 77 13 1116 1511 457086423 457086812 1.810000e-47 200.0
19 TraesCS6D01G038600 chr5A 75.638 431 78 10 1124 1536 70482911 70482490 3.920000e-44 189.0
20 TraesCS6D01G038600 chr5D 77.616 411 75 13 1116 1522 355797706 355797309 1.780000e-57 233.0
21 TraesCS6D01G038600 chr5D 75.231 432 78 16 1124 1536 75354348 75353927 8.480000e-41 178.0
22 TraesCS6D01G038600 chr5B 77.372 411 76 13 1116 1522 420732863 420732466 8.300000e-56 228.0
23 TraesCS6D01G038600 chr5B 76.808 401 77 12 1116 1511 419727586 419727975 8.360000e-51 211.0
24 TraesCS6D01G038600 chr2B 88.535 157 18 0 2508 2664 416060631 416060787 1.090000e-44 191.0
25 TraesCS6D01G038600 chr2B 73.363 443 75 29 16 444 16034317 16034730 1.120000e-24 124.0
26 TraesCS6D01G038600 chr2B 82.877 146 15 5 2320 2456 710995436 710995292 4.030000e-24 122.0
27 TraesCS6D01G038600 chr2B 87.500 96 8 3 2358 2450 357172585 357172491 1.130000e-19 108.0
28 TraesCS6D01G038600 chr7A 83.951 162 25 1 1770 1931 721189659 721189499 1.430000e-33 154.0
29 TraesCS6D01G038600 chrUn 89.899 99 9 1 2358 2456 13810392 13810295 3.120000e-25 126.0
30 TraesCS6D01G038600 chrUn 89.899 99 9 1 2358 2456 362507975 362507878 3.120000e-25 126.0
31 TraesCS6D01G038600 chr2A 89.899 99 9 1 2358 2456 177895816 177895719 3.120000e-25 126.0
32 TraesCS6D01G038600 chr2A 91.398 93 7 1 2361 2453 306145799 306145708 3.120000e-25 126.0
33 TraesCS6D01G038600 chr2A 86.598 97 11 2 2358 2453 376800588 376800493 4.060000e-19 106.0
34 TraesCS6D01G038600 chr7B 88.889 99 10 1 2358 2456 723887761 723887664 1.450000e-23 121.0
35 TraesCS6D01G038600 chr4B 80.986 142 20 5 2355 2491 545863767 545863906 4.060000e-19 106.0
36 TraesCS6D01G038600 chr4B 96.970 33 1 0 1347 1379 460869774 460869742 4.150000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G038600 chr6D 16142354 16145331 2977 True 5500.0 5500 100.000 1 2978 1 chr6D.!!$R1 2977
1 TraesCS6D01G038600 chr6A 16442096 16444816 2720 True 1578.5 2287 92.085 626 2978 2 chr6A.!!$R1 2352
2 TraesCS6D01G038600 chr6A 447834570 447838520 3950 True 368.0 486 90.194 2311 2848 2 chr6A.!!$R2 537
3 TraesCS6D01G038600 chr6B 27902790 27904416 1626 True 1964.0 1964 88.570 623 2267 1 chr6B.!!$R1 1644
4 TraesCS6D01G038600 chr6B 28063078 28064608 1530 False 1890.0 1890 89.240 660 2177 1 chr6B.!!$F1 1517
5 TraesCS6D01G038600 chr3B 111668956 111669548 592 False 379.0 379 78.664 1318 1921 1 chr3B.!!$F1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
479 480 0.036765 ACGAACGGCCAGAAGCAATA 60.037 50.0 2.24 0.0 46.5 1.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2338 2436 0.099082 GTTTTTCGTCCGGTGCAACA 59.901 50.0 0.98 0.0 39.98 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 9.883142 AATGTCTTGAAATTTGGTACTTTTGAA 57.117 25.926 0.00 0.00 0.00 2.69
130 131 9.883142 ATGTCTTGAAATTTGGTACTTTTGAAA 57.117 25.926 0.00 0.00 0.00 2.69
131 132 9.712305 TGTCTTGAAATTTGGTACTTTTGAAAA 57.288 25.926 0.00 0.00 0.00 2.29
132 133 9.967245 GTCTTGAAATTTGGTACTTTTGAAAAC 57.033 29.630 0.00 0.00 0.00 2.43
133 134 9.157104 TCTTGAAATTTGGTACTTTTGAAAACC 57.843 29.630 0.00 0.00 0.00 3.27
134 135 7.851387 TGAAATTTGGTACTTTTGAAAACCC 57.149 32.000 0.00 0.00 0.00 4.11
135 136 6.824196 TGAAATTTGGTACTTTTGAAAACCCC 59.176 34.615 0.00 0.00 0.00 4.95
136 137 4.388378 TTTGGTACTTTTGAAAACCCCG 57.612 40.909 0.00 0.00 0.00 5.73
137 138 3.294038 TGGTACTTTTGAAAACCCCGA 57.706 42.857 0.00 0.00 0.00 5.14
138 139 3.629087 TGGTACTTTTGAAAACCCCGAA 58.371 40.909 0.00 0.00 0.00 4.30
139 140 4.216708 TGGTACTTTTGAAAACCCCGAAT 58.783 39.130 0.00 0.00 0.00 3.34
140 141 4.650131 TGGTACTTTTGAAAACCCCGAATT 59.350 37.500 0.00 0.00 0.00 2.17
141 142 5.128991 TGGTACTTTTGAAAACCCCGAATTT 59.871 36.000 0.00 0.00 0.00 1.82
142 143 5.693104 GGTACTTTTGAAAACCCCGAATTTC 59.307 40.000 0.00 0.00 36.35 2.17
143 144 5.346181 ACTTTTGAAAACCCCGAATTTCA 57.654 34.783 0.00 0.00 42.17 2.69
144 145 5.924356 ACTTTTGAAAACCCCGAATTTCAT 58.076 33.333 2.20 0.00 43.04 2.57
145 146 6.353323 ACTTTTGAAAACCCCGAATTTCATT 58.647 32.000 2.20 0.00 43.04 2.57
146 147 6.826231 ACTTTTGAAAACCCCGAATTTCATTT 59.174 30.769 2.20 0.00 43.04 2.32
147 148 7.988028 ACTTTTGAAAACCCCGAATTTCATTTA 59.012 29.630 2.20 0.00 43.04 1.40
148 149 7.954788 TTTGAAAACCCCGAATTTCATTTAG 57.045 32.000 2.20 0.00 43.04 1.85
149 150 6.902771 TGAAAACCCCGAATTTCATTTAGA 57.097 33.333 0.00 0.00 39.81 2.10
150 151 6.919721 TGAAAACCCCGAATTTCATTTAGAG 58.080 36.000 0.00 0.00 39.81 2.43
151 152 6.717540 TGAAAACCCCGAATTTCATTTAGAGA 59.282 34.615 0.00 0.00 39.81 3.10
152 153 7.231722 TGAAAACCCCGAATTTCATTTAGAGAA 59.768 33.333 0.00 0.00 39.81 2.87
153 154 6.759497 AACCCCGAATTTCATTTAGAGAAG 57.241 37.500 0.00 0.00 0.00 2.85
154 155 5.193679 ACCCCGAATTTCATTTAGAGAAGG 58.806 41.667 0.00 0.00 0.00 3.46
155 156 5.045140 ACCCCGAATTTCATTTAGAGAAGGA 60.045 40.000 0.00 0.00 0.00 3.36
156 157 5.885912 CCCCGAATTTCATTTAGAGAAGGAA 59.114 40.000 0.00 0.00 0.00 3.36
157 158 6.377146 CCCCGAATTTCATTTAGAGAAGGAAA 59.623 38.462 1.80 1.80 32.66 3.13
158 159 7.093945 CCCCGAATTTCATTTAGAGAAGGAAAA 60.094 37.037 3.24 0.00 31.98 2.29
159 160 7.755373 CCCGAATTTCATTTAGAGAAGGAAAAC 59.245 37.037 3.24 1.51 31.98 2.43
160 161 8.515414 CCGAATTTCATTTAGAGAAGGAAAACT 58.485 33.333 3.24 0.00 31.98 2.66
219 220 7.744087 AAAAATGAATTAGAAAACAAGGGGC 57.256 32.000 0.00 0.00 0.00 5.80
220 221 6.686484 AAATGAATTAGAAAACAAGGGGCT 57.314 33.333 0.00 0.00 0.00 5.19
221 222 5.921962 ATGAATTAGAAAACAAGGGGCTC 57.078 39.130 0.00 0.00 0.00 4.70
222 223 3.756434 TGAATTAGAAAACAAGGGGCTCG 59.244 43.478 0.00 0.00 0.00 5.03
223 224 3.713826 ATTAGAAAACAAGGGGCTCGA 57.286 42.857 0.00 0.00 0.00 4.04
224 225 2.467566 TAGAAAACAAGGGGCTCGAC 57.532 50.000 0.00 0.00 0.00 4.20
225 226 0.602905 AGAAAACAAGGGGCTCGACG 60.603 55.000 0.00 0.00 0.00 5.12
226 227 0.601841 GAAAACAAGGGGCTCGACGA 60.602 55.000 0.00 0.00 0.00 4.20
227 228 0.883370 AAAACAAGGGGCTCGACGAC 60.883 55.000 0.00 0.00 0.00 4.34
228 229 3.569049 AACAAGGGGCTCGACGACG 62.569 63.158 0.00 0.00 41.26 5.12
229 230 3.744719 CAAGGGGCTCGACGACGA 61.745 66.667 9.98 9.98 46.56 4.20
252 253 3.505184 CGGCCCATTACCGTGTGC 61.505 66.667 0.00 0.00 45.70 4.57
253 254 3.138128 GGCCCATTACCGTGTGCC 61.138 66.667 0.00 0.00 35.53 5.01
254 255 3.505184 GCCCATTACCGTGTGCCG 61.505 66.667 0.00 0.00 0.00 5.69
263 264 3.739167 CGTGTGCCGGGAGAAAAA 58.261 55.556 2.18 0.00 0.00 1.94
264 265 1.574428 CGTGTGCCGGGAGAAAAAG 59.426 57.895 2.18 0.00 0.00 2.27
265 266 1.852067 CGTGTGCCGGGAGAAAAAGG 61.852 60.000 2.18 0.00 0.00 3.11
266 267 1.228429 TGTGCCGGGAGAAAAAGGG 60.228 57.895 2.18 0.00 0.00 3.95
267 268 1.977009 GTGCCGGGAGAAAAAGGGG 60.977 63.158 2.18 0.00 0.00 4.79
268 269 2.157452 TGCCGGGAGAAAAAGGGGA 61.157 57.895 2.18 0.00 0.00 4.81
269 270 1.076014 GCCGGGAGAAAAAGGGGAA 59.924 57.895 2.18 0.00 0.00 3.97
270 271 0.965866 GCCGGGAGAAAAAGGGGAAG 60.966 60.000 2.18 0.00 0.00 3.46
271 272 0.696501 CCGGGAGAAAAAGGGGAAGA 59.303 55.000 0.00 0.00 0.00 2.87
272 273 1.285078 CCGGGAGAAAAAGGGGAAGAT 59.715 52.381 0.00 0.00 0.00 2.40
273 274 2.644676 CGGGAGAAAAAGGGGAAGATC 58.355 52.381 0.00 0.00 0.00 2.75
274 275 2.684038 CGGGAGAAAAAGGGGAAGATCC 60.684 54.545 0.00 0.00 35.23 3.36
275 276 2.311841 GGGAGAAAAAGGGGAAGATCCA 59.688 50.000 0.00 0.00 38.64 3.41
276 277 3.625853 GGAGAAAAAGGGGAAGATCCAG 58.374 50.000 0.00 0.00 38.64 3.86
277 278 3.625853 GAGAAAAAGGGGAAGATCCAGG 58.374 50.000 0.00 0.00 38.64 4.45
278 279 2.313041 AGAAAAAGGGGAAGATCCAGGG 59.687 50.000 0.00 0.00 38.64 4.45
279 280 2.074922 AAAAGGGGAAGATCCAGGGA 57.925 50.000 0.00 0.00 38.64 4.20
280 281 2.310413 AAAGGGGAAGATCCAGGGAT 57.690 50.000 0.00 0.00 38.64 3.85
295 296 2.457759 GGATCCATCCCTGGTCTCC 58.542 63.158 6.95 0.00 43.61 3.71
296 297 1.130678 GGATCCATCCCTGGTCTCCC 61.131 65.000 6.95 0.00 43.61 4.30
297 298 1.460305 ATCCATCCCTGGTCTCCCG 60.460 63.158 0.00 0.00 43.61 5.14
298 299 2.257541 ATCCATCCCTGGTCTCCCGT 62.258 60.000 0.00 0.00 43.61 5.28
299 300 2.735772 CCATCCCTGGTCTCCCGTG 61.736 68.421 0.00 0.00 37.79 4.94
300 301 1.990060 CATCCCTGGTCTCCCGTGT 60.990 63.158 0.00 0.00 0.00 4.49
301 302 1.990060 ATCCCTGGTCTCCCGTGTG 60.990 63.158 0.00 0.00 0.00 3.82
302 303 3.706373 CCCTGGTCTCCCGTGTGG 61.706 72.222 0.00 0.00 0.00 4.17
303 304 2.603473 CCTGGTCTCCCGTGTGGA 60.603 66.667 0.00 0.00 42.41 4.02
304 305 2.657237 CTGGTCTCCCGTGTGGAC 59.343 66.667 0.00 0.00 38.61 4.02
305 306 2.920912 TGGTCTCCCGTGTGGACC 60.921 66.667 0.00 0.00 46.80 4.46
306 307 2.920912 GGTCTCCCGTGTGGACCA 60.921 66.667 6.49 0.00 46.14 4.02
307 308 2.342648 GTCTCCCGTGTGGACCAC 59.657 66.667 18.28 18.28 38.61 4.16
308 309 2.123208 TCTCCCGTGTGGACCACA 60.123 61.111 23.72 23.72 44.78 4.17
309 310 2.207229 TCTCCCGTGTGGACCACAG 61.207 63.158 27.81 19.62 45.43 3.66
310 311 3.883744 CTCCCGTGTGGACCACAGC 62.884 68.421 27.81 19.60 45.43 4.40
312 313 4.293648 CCGTGTGGACCACAGCGA 62.294 66.667 32.68 13.06 45.43 4.93
313 314 2.048222 CGTGTGGACCACAGCGAT 60.048 61.111 29.79 0.00 45.43 4.58
314 315 2.094659 CGTGTGGACCACAGCGATC 61.095 63.158 29.79 18.39 45.43 3.69
315 316 1.293498 GTGTGGACCACAGCGATCT 59.707 57.895 27.81 0.00 45.43 2.75
316 317 0.320771 GTGTGGACCACAGCGATCTT 60.321 55.000 27.81 0.00 45.43 2.40
317 318 1.067142 GTGTGGACCACAGCGATCTTA 60.067 52.381 27.81 0.00 45.43 2.10
318 319 1.204704 TGTGGACCACAGCGATCTTAG 59.795 52.381 23.72 0.00 39.62 2.18
319 320 0.175760 TGGACCACAGCGATCTTAGC 59.824 55.000 0.00 0.00 0.00 3.09
320 321 0.530870 GGACCACAGCGATCTTAGCC 60.531 60.000 0.00 0.00 34.64 3.93
321 322 0.175760 GACCACAGCGATCTTAGCCA 59.824 55.000 0.00 0.00 34.64 4.75
322 323 0.833287 ACCACAGCGATCTTAGCCAT 59.167 50.000 0.00 0.00 34.64 4.40
323 324 1.202580 ACCACAGCGATCTTAGCCATC 60.203 52.381 0.00 0.00 34.64 3.51
324 325 1.202568 CCACAGCGATCTTAGCCATCA 60.203 52.381 0.00 0.00 34.64 3.07
325 326 1.863454 CACAGCGATCTTAGCCATCAC 59.137 52.381 0.00 0.00 34.64 3.06
326 327 1.482182 ACAGCGATCTTAGCCATCACA 59.518 47.619 0.00 0.00 34.64 3.58
327 328 2.103771 ACAGCGATCTTAGCCATCACAT 59.896 45.455 0.00 0.00 34.64 3.21
328 329 2.735663 CAGCGATCTTAGCCATCACATC 59.264 50.000 0.00 0.00 34.64 3.06
329 330 2.366590 AGCGATCTTAGCCATCACATCA 59.633 45.455 0.00 0.00 34.64 3.07
330 331 2.478134 GCGATCTTAGCCATCACATCAC 59.522 50.000 0.00 0.00 0.00 3.06
331 332 3.801638 GCGATCTTAGCCATCACATCACT 60.802 47.826 0.00 0.00 0.00 3.41
332 333 4.375272 CGATCTTAGCCATCACATCACTT 58.625 43.478 0.00 0.00 0.00 3.16
333 334 4.210746 CGATCTTAGCCATCACATCACTTG 59.789 45.833 0.00 0.00 0.00 3.16
334 335 4.558226 TCTTAGCCATCACATCACTTGT 57.442 40.909 0.00 0.00 39.91 3.16
344 345 2.854963 ACATCACTTGTGTGCTCATGT 58.145 42.857 0.46 0.76 43.49 3.21
345 346 3.216800 ACATCACTTGTGTGCTCATGTT 58.783 40.909 0.46 0.00 43.49 2.71
346 347 4.388485 ACATCACTTGTGTGCTCATGTTA 58.612 39.130 0.46 0.00 43.49 2.41
347 348 5.005740 ACATCACTTGTGTGCTCATGTTAT 58.994 37.500 0.46 0.00 43.49 1.89
348 349 5.106436 ACATCACTTGTGTGCTCATGTTATG 60.106 40.000 0.46 10.27 43.49 1.90
349 350 3.752747 TCACTTGTGTGCTCATGTTATGG 59.247 43.478 0.46 0.00 43.49 2.74
350 351 3.752747 CACTTGTGTGCTCATGTTATGGA 59.247 43.478 0.00 0.00 37.38 3.41
351 352 4.216042 CACTTGTGTGCTCATGTTATGGAA 59.784 41.667 0.00 0.00 37.38 3.53
352 353 4.456911 ACTTGTGTGCTCATGTTATGGAAG 59.543 41.667 0.00 0.00 0.00 3.46
353 354 4.019792 TGTGTGCTCATGTTATGGAAGT 57.980 40.909 0.00 0.00 0.00 3.01
354 355 3.752747 TGTGTGCTCATGTTATGGAAGTG 59.247 43.478 0.00 0.00 0.00 3.16
355 356 3.753272 GTGTGCTCATGTTATGGAAGTGT 59.247 43.478 0.00 0.00 0.00 3.55
356 357 4.935205 GTGTGCTCATGTTATGGAAGTGTA 59.065 41.667 0.00 0.00 0.00 2.90
357 358 5.586243 GTGTGCTCATGTTATGGAAGTGTAT 59.414 40.000 0.00 0.00 0.00 2.29
358 359 5.817296 TGTGCTCATGTTATGGAAGTGTATC 59.183 40.000 0.00 0.00 0.00 2.24
359 360 5.817296 GTGCTCATGTTATGGAAGTGTATCA 59.183 40.000 0.00 0.00 0.00 2.15
360 361 6.018425 GTGCTCATGTTATGGAAGTGTATCAG 60.018 42.308 0.00 0.00 0.00 2.90
361 362 6.051717 GCTCATGTTATGGAAGTGTATCAGT 58.948 40.000 0.00 0.00 0.00 3.41
362 363 6.540189 GCTCATGTTATGGAAGTGTATCAGTT 59.460 38.462 0.00 0.00 0.00 3.16
363 364 7.066284 GCTCATGTTATGGAAGTGTATCAGTTT 59.934 37.037 0.00 0.00 0.00 2.66
364 365 8.267620 TCATGTTATGGAAGTGTATCAGTTTG 57.732 34.615 0.00 0.00 0.00 2.93
365 366 7.882791 TCATGTTATGGAAGTGTATCAGTTTGT 59.117 33.333 0.00 0.00 0.00 2.83
366 367 9.161629 CATGTTATGGAAGTGTATCAGTTTGTA 57.838 33.333 0.00 0.00 0.00 2.41
367 368 9.733556 ATGTTATGGAAGTGTATCAGTTTGTAA 57.266 29.630 0.00 0.00 0.00 2.41
368 369 9.214957 TGTTATGGAAGTGTATCAGTTTGTAAG 57.785 33.333 0.00 0.00 0.00 2.34
369 370 9.431887 GTTATGGAAGTGTATCAGTTTGTAAGA 57.568 33.333 0.00 0.00 0.00 2.10
371 372 7.724305 TGGAAGTGTATCAGTTTGTAAGAAC 57.276 36.000 0.00 0.00 0.00 3.01
372 373 7.276658 TGGAAGTGTATCAGTTTGTAAGAACA 58.723 34.615 0.00 0.00 31.94 3.18
373 374 7.441157 TGGAAGTGTATCAGTTTGTAAGAACAG 59.559 37.037 0.00 0.00 36.83 3.16
374 375 7.656137 GGAAGTGTATCAGTTTGTAAGAACAGA 59.344 37.037 0.00 0.00 36.83 3.41
375 376 8.958119 AAGTGTATCAGTTTGTAAGAACAGAA 57.042 30.769 0.00 0.00 36.83 3.02
376 377 8.958119 AGTGTATCAGTTTGTAAGAACAGAAA 57.042 30.769 0.00 0.00 36.83 2.52
377 378 8.827677 AGTGTATCAGTTTGTAAGAACAGAAAC 58.172 33.333 0.00 0.00 36.83 2.78
378 379 8.068380 GTGTATCAGTTTGTAAGAACAGAAACC 58.932 37.037 0.00 0.00 36.83 3.27
379 380 5.728351 TCAGTTTGTAAGAACAGAAACCG 57.272 39.130 0.00 0.00 36.83 4.44
380 381 4.573201 TCAGTTTGTAAGAACAGAAACCGG 59.427 41.667 0.00 0.00 36.83 5.28
381 382 4.334481 CAGTTTGTAAGAACAGAAACCGGT 59.666 41.667 0.00 0.00 36.83 5.28
382 383 4.334481 AGTTTGTAAGAACAGAAACCGGTG 59.666 41.667 8.52 0.00 36.83 4.94
383 384 2.841215 TGTAAGAACAGAAACCGGTGG 58.159 47.619 8.52 0.22 0.00 4.61
384 385 1.534163 GTAAGAACAGAAACCGGTGGC 59.466 52.381 8.52 2.67 0.00 5.01
385 386 1.164041 AAGAACAGAAACCGGTGGCG 61.164 55.000 8.52 0.00 0.00 5.69
386 387 1.595929 GAACAGAAACCGGTGGCGA 60.596 57.895 8.52 0.00 0.00 5.54
387 388 0.953960 GAACAGAAACCGGTGGCGAT 60.954 55.000 8.52 0.00 0.00 4.58
388 389 0.536460 AACAGAAACCGGTGGCGATT 60.536 50.000 8.52 0.00 0.00 3.34
389 390 0.536460 ACAGAAACCGGTGGCGATTT 60.536 50.000 8.52 0.00 0.00 2.17
390 391 0.596082 CAGAAACCGGTGGCGATTTT 59.404 50.000 8.52 0.00 0.00 1.82
391 392 0.596082 AGAAACCGGTGGCGATTTTG 59.404 50.000 8.52 0.00 0.00 2.44
392 393 0.594110 GAAACCGGTGGCGATTTTGA 59.406 50.000 8.52 0.00 0.00 2.69
393 394 1.001158 GAAACCGGTGGCGATTTTGAA 60.001 47.619 8.52 0.00 0.00 2.69
394 395 1.033574 AACCGGTGGCGATTTTGAAA 58.966 45.000 8.52 0.00 0.00 2.69
395 396 1.253100 ACCGGTGGCGATTTTGAAAT 58.747 45.000 6.12 0.00 0.00 2.17
396 397 2.438411 ACCGGTGGCGATTTTGAAATA 58.562 42.857 6.12 0.00 0.00 1.40
397 398 2.820787 ACCGGTGGCGATTTTGAAATAA 59.179 40.909 6.12 0.00 0.00 1.40
398 399 3.256136 ACCGGTGGCGATTTTGAAATAAA 59.744 39.130 6.12 0.00 0.00 1.40
399 400 4.238514 CCGGTGGCGATTTTGAAATAAAA 58.761 39.130 0.00 0.00 0.00 1.52
400 401 4.686554 CCGGTGGCGATTTTGAAATAAAAA 59.313 37.500 0.00 0.00 33.76 1.94
401 402 5.350091 CCGGTGGCGATTTTGAAATAAAAAT 59.650 36.000 0.00 0.00 41.34 1.82
402 403 6.239945 CGGTGGCGATTTTGAAATAAAAATG 58.760 36.000 0.00 0.00 39.31 2.32
403 404 6.090088 CGGTGGCGATTTTGAAATAAAAATGA 59.910 34.615 0.00 0.00 39.31 2.57
404 405 7.359598 CGGTGGCGATTTTGAAATAAAAATGAA 60.360 33.333 0.00 0.00 39.31 2.57
405 406 8.450180 GGTGGCGATTTTGAAATAAAAATGAAT 58.550 29.630 0.00 0.00 39.31 2.57
406 407 9.476761 GTGGCGATTTTGAAATAAAAATGAATC 57.523 29.630 0.00 0.00 39.31 2.52
407 408 9.212641 TGGCGATTTTGAAATAAAAATGAATCA 57.787 25.926 0.00 0.00 39.31 2.57
430 431 1.886886 TTTCTTCACTTACCGGTGGC 58.113 50.000 19.93 0.00 37.75 5.01
431 432 0.759959 TTCTTCACTTACCGGTGGCA 59.240 50.000 19.93 0.00 37.75 4.92
432 433 0.981183 TCTTCACTTACCGGTGGCAT 59.019 50.000 19.93 0.00 37.75 4.40
433 434 1.086696 CTTCACTTACCGGTGGCATG 58.913 55.000 19.93 10.45 37.75 4.06
434 435 0.687920 TTCACTTACCGGTGGCATGA 59.312 50.000 19.93 12.76 37.75 3.07
435 436 0.908910 TCACTTACCGGTGGCATGAT 59.091 50.000 19.93 0.00 37.75 2.45
436 437 1.016627 CACTTACCGGTGGCATGATG 58.983 55.000 19.93 0.21 33.95 3.07
437 438 0.107214 ACTTACCGGTGGCATGATGG 60.107 55.000 19.93 0.00 0.00 3.51
438 439 0.819259 CTTACCGGTGGCATGATGGG 60.819 60.000 19.93 0.00 0.00 4.00
439 440 1.567208 TTACCGGTGGCATGATGGGT 61.567 55.000 19.93 0.00 0.00 4.51
440 441 0.691413 TACCGGTGGCATGATGGGTA 60.691 55.000 19.93 0.00 0.00 3.69
441 442 1.225983 CCGGTGGCATGATGGGTAA 59.774 57.895 0.00 0.00 0.00 2.85
442 443 0.178992 CCGGTGGCATGATGGGTAAT 60.179 55.000 0.00 0.00 0.00 1.89
443 444 1.691196 CGGTGGCATGATGGGTAATT 58.309 50.000 0.00 0.00 0.00 1.40
444 445 1.337703 CGGTGGCATGATGGGTAATTG 59.662 52.381 0.00 0.00 0.00 2.32
445 446 2.387757 GGTGGCATGATGGGTAATTGT 58.612 47.619 0.00 0.00 0.00 2.71
446 447 2.765699 GGTGGCATGATGGGTAATTGTT 59.234 45.455 0.00 0.00 0.00 2.83
447 448 3.430651 GGTGGCATGATGGGTAATTGTTG 60.431 47.826 0.00 0.00 0.00 3.33
448 449 3.195396 GTGGCATGATGGGTAATTGTTGT 59.805 43.478 0.00 0.00 0.00 3.32
449 450 3.446873 TGGCATGATGGGTAATTGTTGTC 59.553 43.478 0.00 0.00 0.00 3.18
450 451 3.446873 GGCATGATGGGTAATTGTTGTCA 59.553 43.478 0.00 0.00 0.00 3.58
451 452 4.081752 GGCATGATGGGTAATTGTTGTCAA 60.082 41.667 0.00 0.00 37.98 3.18
452 453 5.395546 GGCATGATGGGTAATTGTTGTCAAT 60.396 40.000 0.00 0.00 44.94 2.57
467 468 3.117434 GTCAATTTCCATGACGAACGG 57.883 47.619 0.00 0.00 37.98 4.44
468 469 1.466950 TCAATTTCCATGACGAACGGC 59.533 47.619 0.00 0.00 0.00 5.68
469 470 0.808755 AATTTCCATGACGAACGGCC 59.191 50.000 0.00 0.00 0.00 6.13
470 471 0.322098 ATTTCCATGACGAACGGCCA 60.322 50.000 2.24 0.00 0.00 5.36
471 472 0.953471 TTTCCATGACGAACGGCCAG 60.953 55.000 2.24 0.00 0.00 4.85
472 473 1.822114 TTCCATGACGAACGGCCAGA 61.822 55.000 2.24 0.00 0.00 3.86
473 474 1.375396 CCATGACGAACGGCCAGAA 60.375 57.895 2.24 0.00 0.00 3.02
474 475 1.361668 CCATGACGAACGGCCAGAAG 61.362 60.000 2.24 0.00 0.00 2.85
475 476 1.741770 ATGACGAACGGCCAGAAGC 60.742 57.895 2.24 0.00 42.60 3.86
476 477 2.357034 GACGAACGGCCAGAAGCA 60.357 61.111 2.24 0.00 46.50 3.91
477 478 1.959226 GACGAACGGCCAGAAGCAA 60.959 57.895 2.24 0.00 46.50 3.91
478 479 1.298859 GACGAACGGCCAGAAGCAAT 61.299 55.000 2.24 0.00 46.50 3.56
479 480 0.036765 ACGAACGGCCAGAAGCAATA 60.037 50.000 2.24 0.00 46.50 1.90
480 481 1.083489 CGAACGGCCAGAAGCAATAA 58.917 50.000 2.24 0.00 46.50 1.40
481 482 1.670811 CGAACGGCCAGAAGCAATAAT 59.329 47.619 2.24 0.00 46.50 1.28
482 483 2.097466 CGAACGGCCAGAAGCAATAATT 59.903 45.455 2.24 0.00 46.50 1.40
483 484 3.695816 GAACGGCCAGAAGCAATAATTC 58.304 45.455 2.24 0.00 46.50 2.17
484 485 2.024414 ACGGCCAGAAGCAATAATTCC 58.976 47.619 2.24 0.00 46.50 3.01
485 486 2.301346 CGGCCAGAAGCAATAATTCCT 58.699 47.619 2.24 0.00 46.50 3.36
486 487 2.689983 CGGCCAGAAGCAATAATTCCTT 59.310 45.455 2.24 0.00 46.50 3.36
487 488 3.131046 CGGCCAGAAGCAATAATTCCTTT 59.869 43.478 2.24 0.00 46.50 3.11
488 489 4.338118 CGGCCAGAAGCAATAATTCCTTTA 59.662 41.667 2.24 0.00 46.50 1.85
489 490 5.010012 CGGCCAGAAGCAATAATTCCTTTAT 59.990 40.000 2.24 0.00 46.50 1.40
490 491 6.461509 CGGCCAGAAGCAATAATTCCTTTATT 60.462 38.462 2.24 0.00 46.50 1.40
491 492 7.255451 CGGCCAGAAGCAATAATTCCTTTATTA 60.255 37.037 2.24 0.00 46.50 0.98
492 493 8.588472 GGCCAGAAGCAATAATTCCTTTATTAT 58.412 33.333 0.00 0.00 46.50 1.28
493 494 9.987272 GCCAGAAGCAATAATTCCTTTATTATT 57.013 29.630 0.00 0.00 38.23 1.40
538 539 8.819643 AAGACGTAAGATAAGATTTAGATGGC 57.180 34.615 0.00 0.00 43.62 4.40
539 540 8.184304 AGACGTAAGATAAGATTTAGATGGCT 57.816 34.615 0.00 0.00 43.62 4.75
540 541 8.085296 AGACGTAAGATAAGATTTAGATGGCTG 58.915 37.037 0.00 0.00 43.62 4.85
541 542 7.155328 ACGTAAGATAAGATTTAGATGGCTGG 58.845 38.462 0.00 0.00 43.62 4.85
542 543 7.155328 CGTAAGATAAGATTTAGATGGCTGGT 58.845 38.462 0.00 0.00 43.02 4.00
543 544 7.116948 CGTAAGATAAGATTTAGATGGCTGGTG 59.883 40.741 0.00 0.00 43.02 4.17
544 545 5.312079 AGATAAGATTTAGATGGCTGGTGC 58.688 41.667 0.00 0.00 38.76 5.01
545 546 3.659183 AAGATTTAGATGGCTGGTGCT 57.341 42.857 0.00 0.00 39.59 4.40
546 547 4.778213 AAGATTTAGATGGCTGGTGCTA 57.222 40.909 0.00 0.00 39.59 3.49
547 548 4.078639 AGATTTAGATGGCTGGTGCTAC 57.921 45.455 0.00 0.00 39.59 3.58
548 549 2.710096 TTTAGATGGCTGGTGCTACC 57.290 50.000 0.00 0.00 39.22 3.18
549 550 0.464036 TTAGATGGCTGGTGCTACCG 59.536 55.000 0.00 0.00 42.58 4.02
550 551 0.686441 TAGATGGCTGGTGCTACCGT 60.686 55.000 0.00 0.00 42.58 4.83
551 552 1.815421 GATGGCTGGTGCTACCGTG 60.815 63.158 0.00 0.00 42.58 4.94
552 553 3.329542 ATGGCTGGTGCTACCGTGG 62.330 63.158 0.00 0.00 42.58 4.94
553 554 3.702048 GGCTGGTGCTACCGTGGA 61.702 66.667 0.00 0.00 42.58 4.02
554 555 2.125512 GCTGGTGCTACCGTGGAG 60.126 66.667 0.00 0.00 42.58 3.86
555 556 2.579201 CTGGTGCTACCGTGGAGG 59.421 66.667 0.00 0.00 42.58 4.30
556 557 1.982395 CTGGTGCTACCGTGGAGGA 60.982 63.158 0.00 0.00 42.58 3.71
557 558 1.534476 TGGTGCTACCGTGGAGGAA 60.534 57.895 0.00 0.00 42.58 3.36
558 559 1.218316 GGTGCTACCGTGGAGGAAG 59.782 63.158 0.00 0.00 45.00 3.46
559 560 1.255667 GGTGCTACCGTGGAGGAAGA 61.256 60.000 0.00 0.00 45.00 2.87
560 561 0.606604 GTGCTACCGTGGAGGAAGAA 59.393 55.000 0.00 0.00 45.00 2.52
561 562 1.207329 GTGCTACCGTGGAGGAAGAAT 59.793 52.381 0.00 0.00 45.00 2.40
562 563 1.906574 TGCTACCGTGGAGGAAGAATT 59.093 47.619 0.00 0.00 45.00 2.17
563 564 2.304761 TGCTACCGTGGAGGAAGAATTT 59.695 45.455 0.00 0.00 45.00 1.82
564 565 3.516300 TGCTACCGTGGAGGAAGAATTTA 59.484 43.478 0.00 0.00 45.00 1.40
565 566 4.163458 TGCTACCGTGGAGGAAGAATTTAT 59.837 41.667 0.00 0.00 45.00 1.40
566 567 4.511826 GCTACCGTGGAGGAAGAATTTATG 59.488 45.833 0.00 0.00 45.00 1.90
567 568 3.886123 ACCGTGGAGGAAGAATTTATGG 58.114 45.455 0.00 0.00 45.00 2.74
568 569 3.265995 ACCGTGGAGGAAGAATTTATGGT 59.734 43.478 0.00 0.00 45.00 3.55
569 570 4.263771 ACCGTGGAGGAAGAATTTATGGTT 60.264 41.667 0.00 0.00 45.00 3.67
570 571 4.096382 CCGTGGAGGAAGAATTTATGGTTG 59.904 45.833 0.00 0.00 45.00 3.77
571 572 4.941263 CGTGGAGGAAGAATTTATGGTTGA 59.059 41.667 0.00 0.00 0.00 3.18
572 573 5.065218 CGTGGAGGAAGAATTTATGGTTGAG 59.935 44.000 0.00 0.00 0.00 3.02
573 574 6.180472 GTGGAGGAAGAATTTATGGTTGAGA 58.820 40.000 0.00 0.00 0.00 3.27
574 575 6.317391 GTGGAGGAAGAATTTATGGTTGAGAG 59.683 42.308 0.00 0.00 0.00 3.20
575 576 5.825151 GGAGGAAGAATTTATGGTTGAGAGG 59.175 44.000 0.00 0.00 0.00 3.69
576 577 6.353082 GGAGGAAGAATTTATGGTTGAGAGGA 60.353 42.308 0.00 0.00 0.00 3.71
577 578 6.418946 AGGAAGAATTTATGGTTGAGAGGAC 58.581 40.000 0.00 0.00 0.00 3.85
578 579 6.012508 AGGAAGAATTTATGGTTGAGAGGACA 60.013 38.462 0.00 0.00 0.00 4.02
579 580 6.094186 GGAAGAATTTATGGTTGAGAGGACAC 59.906 42.308 0.00 0.00 0.00 3.67
580 581 6.126863 AGAATTTATGGTTGAGAGGACACA 57.873 37.500 0.00 0.00 0.00 3.72
581 582 6.725364 AGAATTTATGGTTGAGAGGACACAT 58.275 36.000 0.00 0.00 0.00 3.21
582 583 6.825721 AGAATTTATGGTTGAGAGGACACATC 59.174 38.462 0.00 0.00 0.00 3.06
583 584 5.762179 TTTATGGTTGAGAGGACACATCT 57.238 39.130 0.00 0.00 0.00 2.90
584 585 5.762179 TTATGGTTGAGAGGACACATCTT 57.238 39.130 0.00 0.00 0.00 2.40
585 586 3.685139 TGGTTGAGAGGACACATCTTC 57.315 47.619 0.00 0.00 0.00 2.87
586 587 2.303022 TGGTTGAGAGGACACATCTTCC 59.697 50.000 0.00 0.00 31.23 3.46
587 588 2.611518 GTTGAGAGGACACATCTTCCG 58.388 52.381 0.00 0.00 38.29 4.30
588 589 1.186200 TGAGAGGACACATCTTCCGG 58.814 55.000 0.00 0.00 38.29 5.14
589 590 1.187087 GAGAGGACACATCTTCCGGT 58.813 55.000 0.00 0.00 38.29 5.28
590 591 2.291346 TGAGAGGACACATCTTCCGGTA 60.291 50.000 0.00 0.00 38.29 4.02
591 592 2.758979 GAGAGGACACATCTTCCGGTAA 59.241 50.000 0.00 0.00 38.29 2.85
592 593 3.170717 AGAGGACACATCTTCCGGTAAA 58.829 45.455 0.00 0.00 38.29 2.01
593 594 3.581332 AGAGGACACATCTTCCGGTAAAA 59.419 43.478 0.00 0.00 38.29 1.52
594 595 3.671716 AGGACACATCTTCCGGTAAAAC 58.328 45.455 0.00 0.00 38.29 2.43
595 596 2.745821 GGACACATCTTCCGGTAAAACC 59.254 50.000 0.00 0.00 34.05 3.27
596 597 3.404899 GACACATCTTCCGGTAAAACCA 58.595 45.455 0.00 0.00 38.47 3.67
597 598 3.408634 ACACATCTTCCGGTAAAACCAG 58.591 45.455 0.00 0.00 38.47 4.00
598 599 2.161609 CACATCTTCCGGTAAAACCAGC 59.838 50.000 0.00 0.00 38.47 4.85
599 600 1.396996 CATCTTCCGGTAAAACCAGCG 59.603 52.381 0.00 0.00 38.47 5.18
600 601 0.952010 TCTTCCGGTAAAACCAGCGC 60.952 55.000 0.00 0.00 38.47 5.92
601 602 2.235536 CTTCCGGTAAAACCAGCGCG 62.236 60.000 0.00 0.00 38.47 6.86
602 603 2.992607 TTCCGGTAAAACCAGCGCGT 62.993 55.000 8.43 0.00 38.47 6.01
603 604 1.737371 CCGGTAAAACCAGCGCGTA 60.737 57.895 8.43 0.00 38.47 4.42
604 605 1.689352 CCGGTAAAACCAGCGCGTAG 61.689 60.000 8.43 0.00 38.47 3.51
605 606 1.422662 GGTAAAACCAGCGCGTAGC 59.577 57.895 8.43 0.00 45.23 3.58
618 619 2.162716 CGTAGCAGTGTGGAAAGGC 58.837 57.895 0.00 0.00 0.00 4.35
619 620 0.320771 CGTAGCAGTGTGGAAAGGCT 60.321 55.000 0.00 0.00 38.55 4.58
620 621 1.067142 CGTAGCAGTGTGGAAAGGCTA 60.067 52.381 0.00 0.00 36.10 3.93
621 622 2.418746 CGTAGCAGTGTGGAAAGGCTAT 60.419 50.000 0.00 0.00 39.07 2.97
649 650 2.674796 ATCTGAGGTTTGGTACGAGC 57.325 50.000 0.00 0.00 0.00 5.03
657 658 2.223377 GGTTTGGTACGAGCACAAAGAG 59.777 50.000 0.00 0.00 35.06 2.85
662 663 2.059541 GTACGAGCACAAAGAGACACC 58.940 52.381 0.00 0.00 0.00 4.16
701 710 3.261897 AGACAAGTCAGACGGAAATCCAT 59.738 43.478 2.72 0.00 35.14 3.41
705 714 0.911769 TCAGACGGAAATCCATGGCT 59.088 50.000 6.96 0.00 35.14 4.75
791 805 1.303317 ATCGGGCAGGGACAACAAC 60.303 57.895 0.00 0.00 0.00 3.32
856 874 1.824852 TCAGCAGGTGAATCGAAGCTA 59.175 47.619 0.00 0.00 29.64 3.32
858 876 0.933796 GCAGGTGAATCGAAGCTAGC 59.066 55.000 6.62 6.62 0.00 3.42
859 877 1.472376 GCAGGTGAATCGAAGCTAGCT 60.472 52.381 12.68 12.68 0.00 3.32
913 932 3.181475 GCGAAGACCATCATCTACTCCAA 60.181 47.826 0.00 0.00 0.00 3.53
914 933 4.615949 CGAAGACCATCATCTACTCCAAG 58.384 47.826 0.00 0.00 0.00 3.61
915 934 4.098654 CGAAGACCATCATCTACTCCAAGT 59.901 45.833 0.00 0.00 0.00 3.16
942 961 1.762370 TGAGCTAATCAATGGCGGAGA 59.238 47.619 0.00 0.00 34.02 3.71
975 1017 1.377366 GCCCGTGTCTCATCTCTCGA 61.377 60.000 0.00 0.00 0.00 4.04
980 1022 1.813178 GTGTCTCATCTCTCGACCACA 59.187 52.381 0.00 0.00 0.00 4.17
995 1041 1.739667 CACAGTCTGACGACCCACA 59.260 57.895 6.91 0.00 41.16 4.17
1197 1249 0.395862 TCTTCTCCCGCCTCTACCTG 60.396 60.000 0.00 0.00 0.00 4.00
1538 1603 2.974698 GGCGATCATGGCCGGAAG 60.975 66.667 5.05 0.00 41.39 3.46
1540 1605 2.537560 GCGATCATGGCCGGAAGTG 61.538 63.158 5.05 0.00 0.00 3.16
1541 1606 2.537560 CGATCATGGCCGGAAGTGC 61.538 63.158 5.05 0.00 0.00 4.40
1542 1607 1.153086 GATCATGGCCGGAAGTGCT 60.153 57.895 5.05 0.00 0.00 4.40
1543 1608 1.442526 GATCATGGCCGGAAGTGCTG 61.443 60.000 5.05 0.00 0.00 4.41
1544 1609 1.913951 ATCATGGCCGGAAGTGCTGA 61.914 55.000 5.05 0.00 0.00 4.26
1549 1617 1.442526 GGCCGGAAGTGCTGATGATG 61.443 60.000 5.05 0.00 0.00 3.07
1552 1620 1.405933 CCGGAAGTGCTGATGATGACA 60.406 52.381 0.00 0.00 0.00 3.58
1739 1812 2.514824 GAACCCGATGGCTCCTGC 60.515 66.667 0.00 0.00 38.76 4.85
1836 1909 2.728817 GCCGCGTACTATCAGGCT 59.271 61.111 4.92 0.00 44.06 4.58
1947 2020 3.458163 TCGTCGGCCCTCATGGAC 61.458 66.667 0.00 0.00 39.70 4.02
1982 2055 1.613925 CCTCTCCGGCGAATGATCTAA 59.386 52.381 9.30 0.00 0.00 2.10
2057 2143 5.972935 ACTTTACACAAACTGAAAAAGGGG 58.027 37.500 0.00 0.00 33.90 4.79
2300 2398 7.862675 AGAACACCAGCTCTATACCTTAATTT 58.137 34.615 0.00 0.00 0.00 1.82
2357 2455 0.099082 TGTTGCACCGGACGAAAAAC 59.901 50.000 9.46 4.39 0.00 2.43
2642 6484 8.219105 AGTTTTAAATAACGACGAATGAGTCAC 58.781 33.333 0.00 0.00 40.98 3.67
2717 6559 7.208379 CACAATAAGTTTGACAGTTTGTGTG 57.792 36.000 0.00 0.00 40.56 3.82
2723 6565 7.633193 AAGTTTGACAGTTTGTGTGGTATTA 57.367 32.000 0.00 0.00 40.56 0.98
2888 6731 4.394300 GGCCATAGATATCACATGTTGCTC 59.606 45.833 5.32 0.00 0.00 4.26
2956 6801 7.907389 TCTTCTGGTCAATATAAACAGACTGT 58.093 34.615 1.07 1.07 37.86 3.55
2957 6802 7.819415 TCTTCTGGTCAATATAAACAGACTGTG 59.181 37.037 9.33 0.00 37.86 3.66
2969 6814 1.991264 CAGACTGTGACAAGATGCTCG 59.009 52.381 0.00 0.00 0.00 5.03
2970 6815 1.067283 AGACTGTGACAAGATGCTCGG 60.067 52.381 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 9.883142 TTCAAAAGTACCAAATTTCAAGACATT 57.117 25.926 0.00 0.00 0.00 2.71
104 105 9.883142 TTTCAAAAGTACCAAATTTCAAGACAT 57.117 25.926 0.00 0.00 0.00 3.06
105 106 9.712305 TTTTCAAAAGTACCAAATTTCAAGACA 57.288 25.926 0.00 0.00 0.00 3.41
106 107 9.967245 GTTTTCAAAAGTACCAAATTTCAAGAC 57.033 29.630 0.00 0.00 0.00 3.01
107 108 9.157104 GGTTTTCAAAAGTACCAAATTTCAAGA 57.843 29.630 0.00 0.00 0.00 3.02
108 109 8.394877 GGGTTTTCAAAAGTACCAAATTTCAAG 58.605 33.333 0.00 0.00 32.20 3.02
109 110 7.337184 GGGGTTTTCAAAAGTACCAAATTTCAA 59.663 33.333 0.00 0.00 32.20 2.69
110 111 6.824196 GGGGTTTTCAAAAGTACCAAATTTCA 59.176 34.615 0.00 0.00 32.20 2.69
111 112 6.018588 CGGGGTTTTCAAAAGTACCAAATTTC 60.019 38.462 0.00 0.00 32.20 2.17
112 113 5.818336 CGGGGTTTTCAAAAGTACCAAATTT 59.182 36.000 0.00 0.00 32.20 1.82
113 114 5.128991 TCGGGGTTTTCAAAAGTACCAAATT 59.871 36.000 0.00 0.00 32.20 1.82
114 115 4.650131 TCGGGGTTTTCAAAAGTACCAAAT 59.350 37.500 0.00 0.00 32.20 2.32
115 116 4.021916 TCGGGGTTTTCAAAAGTACCAAA 58.978 39.130 0.00 0.00 32.20 3.28
116 117 3.629087 TCGGGGTTTTCAAAAGTACCAA 58.371 40.909 0.00 0.00 32.20 3.67
117 118 3.294038 TCGGGGTTTTCAAAAGTACCA 57.706 42.857 0.00 0.00 32.20 3.25
118 119 4.859304 ATTCGGGGTTTTCAAAAGTACC 57.141 40.909 0.00 0.00 0.00 3.34
119 120 6.274579 TGAAATTCGGGGTTTTCAAAAGTAC 58.725 36.000 0.00 0.00 38.52 2.73
120 121 6.466885 TGAAATTCGGGGTTTTCAAAAGTA 57.533 33.333 0.00 0.00 38.52 2.24
121 122 5.346181 TGAAATTCGGGGTTTTCAAAAGT 57.654 34.783 0.00 0.00 38.52 2.66
122 123 6.859420 AATGAAATTCGGGGTTTTCAAAAG 57.141 33.333 2.60 0.00 43.04 2.27
123 124 8.204836 TCTAAATGAAATTCGGGGTTTTCAAAA 58.795 29.630 2.60 0.00 43.04 2.44
124 125 7.727181 TCTAAATGAAATTCGGGGTTTTCAAA 58.273 30.769 2.60 0.00 43.04 2.69
125 126 7.231722 TCTCTAAATGAAATTCGGGGTTTTCAA 59.768 33.333 2.60 0.00 43.04 2.69
126 127 6.717540 TCTCTAAATGAAATTCGGGGTTTTCA 59.282 34.615 1.08 1.08 43.70 2.69
127 128 7.153217 TCTCTAAATGAAATTCGGGGTTTTC 57.847 36.000 0.00 0.00 33.67 2.29
128 129 7.309805 CCTTCTCTAAATGAAATTCGGGGTTTT 60.310 37.037 0.00 0.00 33.67 2.43
129 130 6.152831 CCTTCTCTAAATGAAATTCGGGGTTT 59.847 38.462 0.00 0.00 33.67 3.27
130 131 5.652452 CCTTCTCTAAATGAAATTCGGGGTT 59.348 40.000 0.00 0.00 33.67 4.11
131 132 5.045140 TCCTTCTCTAAATGAAATTCGGGGT 60.045 40.000 0.00 0.00 33.67 4.95
132 133 5.437060 TCCTTCTCTAAATGAAATTCGGGG 58.563 41.667 0.00 0.00 33.67 5.73
133 134 7.391148 TTTCCTTCTCTAAATGAAATTCGGG 57.609 36.000 0.00 0.00 33.67 5.14
134 135 8.515414 AGTTTTCCTTCTCTAAATGAAATTCGG 58.485 33.333 0.00 0.00 33.67 4.30
193 194 9.448438 GCCCCTTGTTTTCTAATTCATTTTTAT 57.552 29.630 0.00 0.00 0.00 1.40
194 195 8.655901 AGCCCCTTGTTTTCTAATTCATTTTTA 58.344 29.630 0.00 0.00 0.00 1.52
195 196 7.517320 AGCCCCTTGTTTTCTAATTCATTTTT 58.483 30.769 0.00 0.00 0.00 1.94
196 197 7.078249 AGCCCCTTGTTTTCTAATTCATTTT 57.922 32.000 0.00 0.00 0.00 1.82
197 198 6.572314 CGAGCCCCTTGTTTTCTAATTCATTT 60.572 38.462 0.00 0.00 0.00 2.32
198 199 5.105756 CGAGCCCCTTGTTTTCTAATTCATT 60.106 40.000 0.00 0.00 0.00 2.57
199 200 4.399303 CGAGCCCCTTGTTTTCTAATTCAT 59.601 41.667 0.00 0.00 0.00 2.57
200 201 3.756434 CGAGCCCCTTGTTTTCTAATTCA 59.244 43.478 0.00 0.00 0.00 2.57
201 202 4.007659 TCGAGCCCCTTGTTTTCTAATTC 58.992 43.478 0.00 0.00 0.00 2.17
202 203 3.756963 GTCGAGCCCCTTGTTTTCTAATT 59.243 43.478 0.00 0.00 0.00 1.40
203 204 3.344515 GTCGAGCCCCTTGTTTTCTAAT 58.655 45.455 0.00 0.00 0.00 1.73
204 205 2.774687 GTCGAGCCCCTTGTTTTCTAA 58.225 47.619 0.00 0.00 0.00 2.10
205 206 1.337447 CGTCGAGCCCCTTGTTTTCTA 60.337 52.381 0.00 0.00 0.00 2.10
206 207 0.602905 CGTCGAGCCCCTTGTTTTCT 60.603 55.000 0.00 0.00 0.00 2.52
207 208 0.601841 TCGTCGAGCCCCTTGTTTTC 60.602 55.000 0.00 0.00 0.00 2.29
208 209 0.883370 GTCGTCGAGCCCCTTGTTTT 60.883 55.000 0.00 0.00 0.00 2.43
209 210 1.301479 GTCGTCGAGCCCCTTGTTT 60.301 57.895 0.00 0.00 0.00 2.83
210 211 2.342648 GTCGTCGAGCCCCTTGTT 59.657 61.111 0.00 0.00 0.00 2.83
211 212 4.052229 CGTCGTCGAGCCCCTTGT 62.052 66.667 0.00 0.00 39.71 3.16
212 213 3.744719 TCGTCGTCGAGCCCCTTG 61.745 66.667 0.00 0.00 41.35 3.61
246 247 1.574428 CTTTTTCTCCCGGCACACG 59.426 57.895 0.00 0.00 43.80 4.49
247 248 1.524008 CCCTTTTTCTCCCGGCACAC 61.524 60.000 0.00 0.00 0.00 3.82
248 249 1.228429 CCCTTTTTCTCCCGGCACA 60.228 57.895 0.00 0.00 0.00 4.57
249 250 1.977009 CCCCTTTTTCTCCCGGCAC 60.977 63.158 0.00 0.00 0.00 5.01
250 251 1.721093 TTCCCCTTTTTCTCCCGGCA 61.721 55.000 0.00 0.00 0.00 5.69
251 252 0.965866 CTTCCCCTTTTTCTCCCGGC 60.966 60.000 0.00 0.00 0.00 6.13
252 253 0.696501 TCTTCCCCTTTTTCTCCCGG 59.303 55.000 0.00 0.00 0.00 5.73
253 254 2.644676 GATCTTCCCCTTTTTCTCCCG 58.355 52.381 0.00 0.00 0.00 5.14
254 255 2.311841 TGGATCTTCCCCTTTTTCTCCC 59.688 50.000 0.00 0.00 35.03 4.30
255 256 3.625853 CTGGATCTTCCCCTTTTTCTCC 58.374 50.000 0.00 0.00 35.03 3.71
256 257 3.625853 CCTGGATCTTCCCCTTTTTCTC 58.374 50.000 0.00 0.00 35.03 2.87
257 258 2.313041 CCCTGGATCTTCCCCTTTTTCT 59.687 50.000 0.00 0.00 35.03 2.52
258 259 2.311841 TCCCTGGATCTTCCCCTTTTTC 59.688 50.000 0.00 0.00 35.03 2.29
259 260 2.368170 TCCCTGGATCTTCCCCTTTTT 58.632 47.619 0.00 0.00 35.03 1.94
260 261 2.074922 TCCCTGGATCTTCCCCTTTT 57.925 50.000 0.00 0.00 35.03 2.27
261 262 2.139382 GATCCCTGGATCTTCCCCTTT 58.861 52.381 17.19 0.00 45.42 3.11
262 263 1.826447 GATCCCTGGATCTTCCCCTT 58.174 55.000 17.19 0.00 45.42 3.95
263 264 3.587279 GATCCCTGGATCTTCCCCT 57.413 57.895 17.19 0.00 45.42 4.79
277 278 2.457759 GGAGACCAGGGATGGATCC 58.542 63.158 4.20 4.20 46.41 3.36
298 299 1.204704 CTAAGATCGCTGTGGTCCACA 59.795 52.381 23.38 23.38 42.45 4.17
299 300 1.927895 CTAAGATCGCTGTGGTCCAC 58.072 55.000 15.64 15.64 34.56 4.02
300 301 0.175760 GCTAAGATCGCTGTGGTCCA 59.824 55.000 0.00 0.00 0.00 4.02
301 302 0.530870 GGCTAAGATCGCTGTGGTCC 60.531 60.000 0.00 0.00 0.00 4.46
302 303 0.175760 TGGCTAAGATCGCTGTGGTC 59.824 55.000 0.00 0.00 0.00 4.02
303 304 0.833287 ATGGCTAAGATCGCTGTGGT 59.167 50.000 0.00 0.00 0.00 4.16
304 305 1.202568 TGATGGCTAAGATCGCTGTGG 60.203 52.381 0.00 0.00 0.00 4.17
305 306 1.863454 GTGATGGCTAAGATCGCTGTG 59.137 52.381 0.00 0.00 0.00 3.66
306 307 1.482182 TGTGATGGCTAAGATCGCTGT 59.518 47.619 0.00 0.00 32.54 4.40
307 308 2.229675 TGTGATGGCTAAGATCGCTG 57.770 50.000 0.00 0.00 32.54 5.18
308 309 2.366590 TGATGTGATGGCTAAGATCGCT 59.633 45.455 0.00 0.00 32.54 4.93
309 310 2.478134 GTGATGTGATGGCTAAGATCGC 59.522 50.000 0.00 0.00 0.00 4.58
310 311 3.987547 AGTGATGTGATGGCTAAGATCG 58.012 45.455 0.00 0.00 0.00 3.69
311 312 5.121811 ACAAGTGATGTGATGGCTAAGATC 58.878 41.667 0.00 0.00 41.93 2.75
312 313 5.108187 ACAAGTGATGTGATGGCTAAGAT 57.892 39.130 0.00 0.00 41.93 2.40
313 314 4.558226 ACAAGTGATGTGATGGCTAAGA 57.442 40.909 0.00 0.00 41.93 2.10
324 325 2.854963 ACATGAGCACACAAGTGATGT 58.145 42.857 7.28 3.19 45.89 3.06
325 326 3.909776 AACATGAGCACACAAGTGATG 57.090 42.857 7.28 2.57 45.89 3.07
329 330 4.019792 TCCATAACATGAGCACACAAGT 57.980 40.909 0.00 0.00 0.00 3.16
330 331 4.456911 ACTTCCATAACATGAGCACACAAG 59.543 41.667 0.00 0.00 0.00 3.16
331 332 4.216042 CACTTCCATAACATGAGCACACAA 59.784 41.667 0.00 0.00 0.00 3.33
332 333 3.752747 CACTTCCATAACATGAGCACACA 59.247 43.478 0.00 0.00 0.00 3.72
333 334 3.753272 ACACTTCCATAACATGAGCACAC 59.247 43.478 0.00 0.00 0.00 3.82
334 335 4.019792 ACACTTCCATAACATGAGCACA 57.980 40.909 0.00 0.00 0.00 4.57
335 336 5.817296 TGATACACTTCCATAACATGAGCAC 59.183 40.000 0.00 0.00 0.00 4.40
336 337 5.988287 TGATACACTTCCATAACATGAGCA 58.012 37.500 0.00 0.00 0.00 4.26
337 338 6.051717 ACTGATACACTTCCATAACATGAGC 58.948 40.000 0.00 0.00 0.00 4.26
338 339 8.393366 CAAACTGATACACTTCCATAACATGAG 58.607 37.037 0.00 0.00 0.00 2.90
339 340 7.882791 ACAAACTGATACACTTCCATAACATGA 59.117 33.333 0.00 0.00 0.00 3.07
340 341 8.044060 ACAAACTGATACACTTCCATAACATG 57.956 34.615 0.00 0.00 0.00 3.21
341 342 9.733556 TTACAAACTGATACACTTCCATAACAT 57.266 29.630 0.00 0.00 0.00 2.71
342 343 9.214957 CTTACAAACTGATACACTTCCATAACA 57.785 33.333 0.00 0.00 0.00 2.41
343 344 9.431887 TCTTACAAACTGATACACTTCCATAAC 57.568 33.333 0.00 0.00 0.00 1.89
345 346 9.431887 GTTCTTACAAACTGATACACTTCCATA 57.568 33.333 0.00 0.00 0.00 2.74
346 347 7.936847 TGTTCTTACAAACTGATACACTTCCAT 59.063 33.333 0.00 0.00 0.00 3.41
347 348 7.276658 TGTTCTTACAAACTGATACACTTCCA 58.723 34.615 0.00 0.00 0.00 3.53
348 349 7.656137 TCTGTTCTTACAAACTGATACACTTCC 59.344 37.037 0.00 0.00 33.73 3.46
349 350 8.589335 TCTGTTCTTACAAACTGATACACTTC 57.411 34.615 0.00 0.00 33.73 3.01
350 351 8.958119 TTCTGTTCTTACAAACTGATACACTT 57.042 30.769 0.00 0.00 37.09 3.16
351 352 8.827677 GTTTCTGTTCTTACAAACTGATACACT 58.172 33.333 10.18 0.00 38.12 3.55
352 353 8.068380 GGTTTCTGTTCTTACAAACTGATACAC 58.932 37.037 14.22 6.30 39.00 2.90
353 354 7.042321 CGGTTTCTGTTCTTACAAACTGATACA 60.042 37.037 14.22 0.00 39.00 2.29
354 355 7.288672 CGGTTTCTGTTCTTACAAACTGATAC 58.711 38.462 0.00 7.94 35.07 2.24
355 356 6.425721 CCGGTTTCTGTTCTTACAAACTGATA 59.574 38.462 0.00 0.00 35.07 2.15
356 357 5.238650 CCGGTTTCTGTTCTTACAAACTGAT 59.761 40.000 0.00 0.00 35.07 2.90
357 358 4.573201 CCGGTTTCTGTTCTTACAAACTGA 59.427 41.667 0.00 0.00 35.07 3.41
358 359 4.334481 ACCGGTTTCTGTTCTTACAAACTG 59.666 41.667 0.00 0.00 33.82 3.16
359 360 4.334481 CACCGGTTTCTGTTCTTACAAACT 59.666 41.667 2.97 0.00 32.92 2.66
360 361 4.496840 CCACCGGTTTCTGTTCTTACAAAC 60.497 45.833 2.97 0.00 32.92 2.93
361 362 3.628487 CCACCGGTTTCTGTTCTTACAAA 59.372 43.478 2.97 0.00 32.92 2.83
362 363 3.207778 CCACCGGTTTCTGTTCTTACAA 58.792 45.455 2.97 0.00 32.92 2.41
363 364 2.841215 CCACCGGTTTCTGTTCTTACA 58.159 47.619 2.97 0.00 0.00 2.41
364 365 1.534163 GCCACCGGTTTCTGTTCTTAC 59.466 52.381 2.97 0.00 0.00 2.34
365 366 1.874739 CGCCACCGGTTTCTGTTCTTA 60.875 52.381 2.97 0.00 0.00 2.10
366 367 1.164041 CGCCACCGGTTTCTGTTCTT 61.164 55.000 2.97 0.00 0.00 2.52
367 368 1.597027 CGCCACCGGTTTCTGTTCT 60.597 57.895 2.97 0.00 0.00 3.01
368 369 0.953960 ATCGCCACCGGTTTCTGTTC 60.954 55.000 2.97 0.00 34.56 3.18
369 370 0.536460 AATCGCCACCGGTTTCTGTT 60.536 50.000 2.97 0.00 33.10 3.16
370 371 0.536460 AAATCGCCACCGGTTTCTGT 60.536 50.000 2.97 0.00 43.84 3.41
371 372 0.596082 AAAATCGCCACCGGTTTCTG 59.404 50.000 2.97 0.00 46.26 3.02
372 373 0.596082 CAAAATCGCCACCGGTTTCT 59.404 50.000 2.97 0.00 46.26 2.52
373 374 0.594110 TCAAAATCGCCACCGGTTTC 59.406 50.000 2.97 0.00 46.26 2.78
375 376 1.033574 TTTCAAAATCGCCACCGGTT 58.966 45.000 2.97 0.00 40.01 4.44
376 377 1.253100 ATTTCAAAATCGCCACCGGT 58.747 45.000 0.00 0.00 34.56 5.28
377 378 3.495670 TTATTTCAAAATCGCCACCGG 57.504 42.857 0.00 0.00 34.56 5.28
378 379 5.830900 TTTTTATTTCAAAATCGCCACCG 57.169 34.783 0.00 0.00 0.00 4.94
379 380 7.357951 TCATTTTTATTTCAAAATCGCCACC 57.642 32.000 0.00 0.00 34.70 4.61
380 381 9.476761 GATTCATTTTTATTTCAAAATCGCCAC 57.523 29.630 0.00 0.00 34.70 5.01
381 382 9.212641 TGATTCATTTTTATTTCAAAATCGCCA 57.787 25.926 0.00 0.00 34.70 5.69
409 410 2.619646 GCCACCGGTAAGTGAAGAAAAA 59.380 45.455 6.87 0.00 40.34 1.94
410 411 2.223745 GCCACCGGTAAGTGAAGAAAA 58.776 47.619 6.87 0.00 40.34 2.29
411 412 1.141254 TGCCACCGGTAAGTGAAGAAA 59.859 47.619 6.87 0.00 40.34 2.52
412 413 0.759959 TGCCACCGGTAAGTGAAGAA 59.240 50.000 6.87 0.00 40.34 2.52
413 414 0.981183 ATGCCACCGGTAAGTGAAGA 59.019 50.000 6.87 0.00 40.34 2.87
414 415 1.086696 CATGCCACCGGTAAGTGAAG 58.913 55.000 6.87 0.00 40.34 3.02
415 416 0.687920 TCATGCCACCGGTAAGTGAA 59.312 50.000 6.87 0.00 40.34 3.18
416 417 0.908910 ATCATGCCACCGGTAAGTGA 59.091 50.000 6.87 10.21 40.34 3.41
417 418 1.016627 CATCATGCCACCGGTAAGTG 58.983 55.000 6.87 4.30 37.51 3.16
418 419 0.107214 CCATCATGCCACCGGTAAGT 60.107 55.000 6.87 0.00 0.00 2.24
419 420 0.819259 CCCATCATGCCACCGGTAAG 60.819 60.000 6.87 2.34 0.00 2.34
420 421 1.225983 CCCATCATGCCACCGGTAA 59.774 57.895 6.87 0.00 0.00 2.85
421 422 0.691413 TACCCATCATGCCACCGGTA 60.691 55.000 6.87 0.00 0.00 4.02
422 423 1.567208 TTACCCATCATGCCACCGGT 61.567 55.000 0.00 0.00 0.00 5.28
423 424 0.178992 ATTACCCATCATGCCACCGG 60.179 55.000 0.00 0.00 0.00 5.28
424 425 1.337703 CAATTACCCATCATGCCACCG 59.662 52.381 0.00 0.00 0.00 4.94
425 426 2.387757 ACAATTACCCATCATGCCACC 58.612 47.619 0.00 0.00 0.00 4.61
426 427 3.195396 ACAACAATTACCCATCATGCCAC 59.805 43.478 0.00 0.00 0.00 5.01
427 428 3.439154 ACAACAATTACCCATCATGCCA 58.561 40.909 0.00 0.00 0.00 4.92
428 429 3.446873 TGACAACAATTACCCATCATGCC 59.553 43.478 0.00 0.00 0.00 4.40
429 430 4.717233 TGACAACAATTACCCATCATGC 57.283 40.909 0.00 0.00 0.00 4.06
441 442 5.703978 TCGTCATGGAAATTGACAACAAT 57.296 34.783 4.86 0.00 46.99 2.71
442 443 5.277825 GTTCGTCATGGAAATTGACAACAA 58.722 37.500 4.86 0.00 42.90 2.83
443 444 4.553742 CGTTCGTCATGGAAATTGACAACA 60.554 41.667 4.86 0.00 42.90 3.33
444 445 3.906008 CGTTCGTCATGGAAATTGACAAC 59.094 43.478 4.86 6.77 42.90 3.32
445 446 3.058570 CCGTTCGTCATGGAAATTGACAA 60.059 43.478 4.86 0.00 42.90 3.18
446 447 2.482336 CCGTTCGTCATGGAAATTGACA 59.518 45.455 4.86 0.00 42.90 3.58
447 448 2.727916 GCCGTTCGTCATGGAAATTGAC 60.728 50.000 0.00 0.00 40.06 3.18
448 449 1.466950 GCCGTTCGTCATGGAAATTGA 59.533 47.619 0.00 0.00 32.27 2.57
449 450 1.467374 GGCCGTTCGTCATGGAAATTG 60.467 52.381 0.00 0.00 32.27 2.32
450 451 0.808755 GGCCGTTCGTCATGGAAATT 59.191 50.000 0.00 0.00 32.27 1.82
451 452 0.322098 TGGCCGTTCGTCATGGAAAT 60.322 50.000 0.00 0.00 32.27 2.17
452 453 0.953471 CTGGCCGTTCGTCATGGAAA 60.953 55.000 0.00 0.00 32.27 3.13
453 454 1.375396 CTGGCCGTTCGTCATGGAA 60.375 57.895 0.00 0.00 32.27 3.53
454 455 1.822114 TTCTGGCCGTTCGTCATGGA 61.822 55.000 0.00 0.00 32.27 3.41
455 456 1.361668 CTTCTGGCCGTTCGTCATGG 61.362 60.000 0.00 0.00 34.05 3.66
456 457 1.970917 GCTTCTGGCCGTTCGTCATG 61.971 60.000 0.00 0.00 34.27 3.07
457 458 1.741770 GCTTCTGGCCGTTCGTCAT 60.742 57.895 0.00 0.00 34.27 3.06
458 459 2.357034 GCTTCTGGCCGTTCGTCA 60.357 61.111 0.00 0.00 34.27 4.35
459 460 1.298859 ATTGCTTCTGGCCGTTCGTC 61.299 55.000 0.00 0.00 40.92 4.20
460 461 0.036765 TATTGCTTCTGGCCGTTCGT 60.037 50.000 0.00 0.00 40.92 3.85
461 462 1.083489 TTATTGCTTCTGGCCGTTCG 58.917 50.000 0.00 0.00 40.92 3.95
462 463 3.489229 GGAATTATTGCTTCTGGCCGTTC 60.489 47.826 0.00 0.00 40.92 3.95
463 464 2.427095 GGAATTATTGCTTCTGGCCGTT 59.573 45.455 0.00 0.00 40.92 4.44
464 465 2.024414 GGAATTATTGCTTCTGGCCGT 58.976 47.619 0.00 0.00 40.92 5.68
465 466 2.301346 AGGAATTATTGCTTCTGGCCG 58.699 47.619 0.00 0.00 40.92 6.13
466 467 4.743057 AAAGGAATTATTGCTTCTGGCC 57.257 40.909 11.89 0.00 40.66 5.36
467 468 9.987272 AATAATAAAGGAATTATTGCTTCTGGC 57.013 29.630 11.89 0.00 42.73 4.85
512 513 9.909644 GCCATCTAAATCTTATCTTACGTCTTA 57.090 33.333 0.00 0.00 0.00 2.10
513 514 8.643324 AGCCATCTAAATCTTATCTTACGTCTT 58.357 33.333 0.00 0.00 0.00 3.01
514 515 8.085296 CAGCCATCTAAATCTTATCTTACGTCT 58.915 37.037 0.00 0.00 0.00 4.18
515 516 7.329717 CCAGCCATCTAAATCTTATCTTACGTC 59.670 40.741 0.00 0.00 0.00 4.34
516 517 7.155328 CCAGCCATCTAAATCTTATCTTACGT 58.845 38.462 0.00 0.00 0.00 3.57
517 518 7.116948 CACCAGCCATCTAAATCTTATCTTACG 59.883 40.741 0.00 0.00 0.00 3.18
518 519 7.095017 GCACCAGCCATCTAAATCTTATCTTAC 60.095 40.741 0.00 0.00 33.58 2.34
519 520 6.936900 GCACCAGCCATCTAAATCTTATCTTA 59.063 38.462 0.00 0.00 33.58 2.10
520 521 5.767168 GCACCAGCCATCTAAATCTTATCTT 59.233 40.000 0.00 0.00 33.58 2.40
521 522 5.072872 AGCACCAGCCATCTAAATCTTATCT 59.927 40.000 0.00 0.00 43.56 1.98
522 523 5.312079 AGCACCAGCCATCTAAATCTTATC 58.688 41.667 0.00 0.00 43.56 1.75
523 524 5.316158 AGCACCAGCCATCTAAATCTTAT 57.684 39.130 0.00 0.00 43.56 1.73
524 525 4.778213 AGCACCAGCCATCTAAATCTTA 57.222 40.909 0.00 0.00 43.56 2.10
525 526 3.659183 AGCACCAGCCATCTAAATCTT 57.341 42.857 0.00 0.00 43.56 2.40
526 527 3.181450 GGTAGCACCAGCCATCTAAATCT 60.181 47.826 1.01 0.00 43.56 2.40
527 528 3.142174 GGTAGCACCAGCCATCTAAATC 58.858 50.000 1.01 0.00 43.56 2.17
528 529 2.485479 CGGTAGCACCAGCCATCTAAAT 60.485 50.000 6.21 0.00 43.56 1.40
529 530 1.134521 CGGTAGCACCAGCCATCTAAA 60.135 52.381 6.21 0.00 43.56 1.85
530 531 0.464036 CGGTAGCACCAGCCATCTAA 59.536 55.000 6.21 0.00 43.56 2.10
531 532 0.686441 ACGGTAGCACCAGCCATCTA 60.686 55.000 6.21 0.00 43.56 1.98
532 533 1.990060 ACGGTAGCACCAGCCATCT 60.990 57.895 6.21 0.00 43.56 2.90
533 534 1.815421 CACGGTAGCACCAGCCATC 60.815 63.158 6.21 0.00 43.56 3.51
534 535 2.268920 CACGGTAGCACCAGCCAT 59.731 61.111 6.21 0.00 43.56 4.40
535 536 4.015406 CCACGGTAGCACCAGCCA 62.015 66.667 6.21 0.00 43.56 4.75
536 537 3.665675 CTCCACGGTAGCACCAGCC 62.666 68.421 6.21 0.00 43.56 4.85
537 538 2.125512 CTCCACGGTAGCACCAGC 60.126 66.667 6.21 0.00 38.47 4.85
538 539 1.541310 TTCCTCCACGGTAGCACCAG 61.541 60.000 6.21 2.29 38.47 4.00
539 540 1.534476 TTCCTCCACGGTAGCACCA 60.534 57.895 6.21 0.00 38.47 4.17
540 541 1.218316 CTTCCTCCACGGTAGCACC 59.782 63.158 0.00 0.00 34.05 5.01
541 542 0.606604 TTCTTCCTCCACGGTAGCAC 59.393 55.000 0.00 0.00 30.72 4.40
542 543 1.568504 ATTCTTCCTCCACGGTAGCA 58.431 50.000 0.00 0.00 30.72 3.49
543 544 2.693267 AATTCTTCCTCCACGGTAGC 57.307 50.000 0.00 0.00 30.72 3.58
544 545 5.057149 CCATAAATTCTTCCTCCACGGTAG 58.943 45.833 0.00 0.00 0.00 3.18
545 546 4.472108 ACCATAAATTCTTCCTCCACGGTA 59.528 41.667 0.00 0.00 0.00 4.02
546 547 3.265995 ACCATAAATTCTTCCTCCACGGT 59.734 43.478 0.00 0.00 0.00 4.83
547 548 3.886123 ACCATAAATTCTTCCTCCACGG 58.114 45.455 0.00 0.00 0.00 4.94
548 549 4.941263 TCAACCATAAATTCTTCCTCCACG 59.059 41.667 0.00 0.00 0.00 4.94
549 550 6.180472 TCTCAACCATAAATTCTTCCTCCAC 58.820 40.000 0.00 0.00 0.00 4.02
550 551 6.387192 TCTCAACCATAAATTCTTCCTCCA 57.613 37.500 0.00 0.00 0.00 3.86
551 552 5.825151 CCTCTCAACCATAAATTCTTCCTCC 59.175 44.000 0.00 0.00 0.00 4.30
552 553 6.540551 GTCCTCTCAACCATAAATTCTTCCTC 59.459 42.308 0.00 0.00 0.00 3.71
553 554 6.012508 TGTCCTCTCAACCATAAATTCTTCCT 60.013 38.462 0.00 0.00 0.00 3.36
554 555 6.094186 GTGTCCTCTCAACCATAAATTCTTCC 59.906 42.308 0.00 0.00 0.00 3.46
555 556 6.655003 TGTGTCCTCTCAACCATAAATTCTTC 59.345 38.462 0.00 0.00 0.00 2.87
556 557 6.542821 TGTGTCCTCTCAACCATAAATTCTT 58.457 36.000 0.00 0.00 0.00 2.52
557 558 6.126863 TGTGTCCTCTCAACCATAAATTCT 57.873 37.500 0.00 0.00 0.00 2.40
558 559 6.825721 AGATGTGTCCTCTCAACCATAAATTC 59.174 38.462 0.00 0.00 0.00 2.17
559 560 6.725364 AGATGTGTCCTCTCAACCATAAATT 58.275 36.000 0.00 0.00 0.00 1.82
560 561 6.319048 AGATGTGTCCTCTCAACCATAAAT 57.681 37.500 0.00 0.00 0.00 1.40
561 562 5.762179 AGATGTGTCCTCTCAACCATAAA 57.238 39.130 0.00 0.00 0.00 1.40
562 563 5.338381 GGAAGATGTGTCCTCTCAACCATAA 60.338 44.000 0.00 0.00 31.94 1.90
563 564 4.162320 GGAAGATGTGTCCTCTCAACCATA 59.838 45.833 0.00 0.00 31.94 2.74
564 565 3.054802 GGAAGATGTGTCCTCTCAACCAT 60.055 47.826 0.00 0.00 31.94 3.55
565 566 2.303022 GGAAGATGTGTCCTCTCAACCA 59.697 50.000 0.00 0.00 31.94 3.67
566 567 2.675317 CGGAAGATGTGTCCTCTCAACC 60.675 54.545 0.00 0.00 32.53 3.77
567 568 2.611518 CGGAAGATGTGTCCTCTCAAC 58.388 52.381 0.00 0.00 32.53 3.18
568 569 1.550524 CCGGAAGATGTGTCCTCTCAA 59.449 52.381 0.00 0.00 32.53 3.02
569 570 1.186200 CCGGAAGATGTGTCCTCTCA 58.814 55.000 0.00 0.00 32.53 3.27
570 571 1.187087 ACCGGAAGATGTGTCCTCTC 58.813 55.000 9.46 0.00 32.53 3.20
571 572 2.526888 TACCGGAAGATGTGTCCTCT 57.473 50.000 9.46 0.00 32.53 3.69
572 573 3.604875 TTTACCGGAAGATGTGTCCTC 57.395 47.619 9.46 0.00 32.53 3.71
573 574 3.558533 GGTTTTACCGGAAGATGTGTCCT 60.559 47.826 9.46 0.00 32.53 3.85
574 575 2.745821 GGTTTTACCGGAAGATGTGTCC 59.254 50.000 9.46 0.00 0.00 4.02
575 576 3.404899 TGGTTTTACCGGAAGATGTGTC 58.595 45.455 9.46 0.00 42.58 3.67
576 577 3.495434 TGGTTTTACCGGAAGATGTGT 57.505 42.857 9.46 0.00 42.58 3.72
586 587 1.705727 CTACGCGCTGGTTTTACCG 59.294 57.895 5.73 0.00 42.58 4.02
587 588 1.293267 TGCTACGCGCTGGTTTTACC 61.293 55.000 5.73 0.00 40.11 2.85
588 589 0.094730 CTGCTACGCGCTGGTTTTAC 59.905 55.000 5.73 0.00 40.11 2.01
589 590 0.320073 ACTGCTACGCGCTGGTTTTA 60.320 50.000 5.73 0.00 41.39 1.52
590 591 1.597027 ACTGCTACGCGCTGGTTTT 60.597 52.632 5.73 0.00 41.39 2.43
591 592 2.030562 ACTGCTACGCGCTGGTTT 59.969 55.556 5.73 0.00 41.39 3.27
592 593 2.738521 CACTGCTACGCGCTGGTT 60.739 61.111 5.73 0.00 41.39 3.67
593 594 3.991051 ACACTGCTACGCGCTGGT 61.991 61.111 5.73 0.00 41.39 4.00
594 595 3.481903 CACACTGCTACGCGCTGG 61.482 66.667 5.73 0.00 41.39 4.85
595 596 3.481903 CCACACTGCTACGCGCTG 61.482 66.667 5.73 0.00 42.62 5.18
596 597 2.709125 TTTCCACACTGCTACGCGCT 62.709 55.000 5.73 0.00 40.11 5.92
597 598 2.227968 CTTTCCACACTGCTACGCGC 62.228 60.000 5.73 0.00 39.77 6.86
598 599 1.626654 CCTTTCCACACTGCTACGCG 61.627 60.000 3.53 3.53 0.00 6.01
599 600 1.912371 GCCTTTCCACACTGCTACGC 61.912 60.000 0.00 0.00 0.00 4.42
600 601 0.320771 AGCCTTTCCACACTGCTACG 60.321 55.000 0.00 0.00 0.00 3.51
601 602 2.762535 TAGCCTTTCCACACTGCTAC 57.237 50.000 0.00 0.00 33.63 3.58
602 603 2.837591 TCATAGCCTTTCCACACTGCTA 59.162 45.455 0.00 0.00 38.73 3.49
603 604 1.630369 TCATAGCCTTTCCACACTGCT 59.370 47.619 0.00 0.00 36.11 4.24
604 605 2.113860 TCATAGCCTTTCCACACTGC 57.886 50.000 0.00 0.00 0.00 4.40
605 606 5.614308 TCATATCATAGCCTTTCCACACTG 58.386 41.667 0.00 0.00 0.00 3.66
606 607 5.894298 TCATATCATAGCCTTTCCACACT 57.106 39.130 0.00 0.00 0.00 3.55
607 608 8.263640 AGATATCATATCATAGCCTTTCCACAC 58.736 37.037 7.43 0.00 0.00 3.82
608 609 8.262933 CAGATATCATATCATAGCCTTTCCACA 58.737 37.037 7.43 0.00 0.00 4.17
609 610 8.481314 TCAGATATCATATCATAGCCTTTCCAC 58.519 37.037 7.43 0.00 0.00 4.02
610 611 8.613922 TCAGATATCATATCATAGCCTTTCCA 57.386 34.615 7.43 0.00 0.00 3.53
611 612 8.149647 CCTCAGATATCATATCATAGCCTTTCC 58.850 40.741 7.43 0.00 0.00 3.13
612 613 8.703743 ACCTCAGATATCATATCATAGCCTTTC 58.296 37.037 7.43 0.00 0.00 2.62
613 614 8.621126 ACCTCAGATATCATATCATAGCCTTT 57.379 34.615 7.43 0.00 0.00 3.11
614 615 8.621126 AACCTCAGATATCATATCATAGCCTT 57.379 34.615 7.43 0.00 0.00 4.35
615 616 8.484575 CAAACCTCAGATATCATATCATAGCCT 58.515 37.037 7.43 0.00 0.00 4.58
616 617 7.714377 CCAAACCTCAGATATCATATCATAGCC 59.286 40.741 7.43 0.00 0.00 3.93
617 618 8.263640 ACCAAACCTCAGATATCATATCATAGC 58.736 37.037 7.43 0.00 0.00 2.97
620 621 8.253810 CGTACCAAACCTCAGATATCATATCAT 58.746 37.037 7.43 0.00 0.00 2.45
621 622 7.450323 TCGTACCAAACCTCAGATATCATATCA 59.550 37.037 7.43 0.00 0.00 2.15
645 646 1.528586 CTTGGTGTCTCTTTGTGCTCG 59.471 52.381 0.00 0.00 0.00 5.03
649 650 5.239306 TGCTTTATCTTGGTGTCTCTTTGTG 59.761 40.000 0.00 0.00 0.00 3.33
657 658 7.094805 TGTCTATTGTTGCTTTATCTTGGTGTC 60.095 37.037 0.00 0.00 0.00 3.67
662 663 8.506437 TGACTTGTCTATTGTTGCTTTATCTTG 58.494 33.333 2.35 0.00 0.00 3.02
701 710 2.548057 CACTAGCTTTTCGTTTGAGCCA 59.452 45.455 0.00 0.00 37.11 4.75
705 714 5.119588 CGTATTCCACTAGCTTTTCGTTTGA 59.880 40.000 0.00 0.00 0.00 2.69
791 805 3.186047 CAAAGTAGACGCCGGCCG 61.186 66.667 23.46 21.04 44.21 6.13
913 932 5.686124 GCCATTGATTAGCTCAAGGACTACT 60.686 44.000 0.00 0.00 46.17 2.57
914 933 4.513318 GCCATTGATTAGCTCAAGGACTAC 59.487 45.833 0.00 0.00 46.17 2.73
915 934 4.708177 GCCATTGATTAGCTCAAGGACTA 58.292 43.478 0.00 0.00 46.17 2.59
942 961 4.411212 AGACACGGGCCCTAATTAATACTT 59.589 41.667 22.43 0.00 0.00 2.24
975 1017 1.456892 TGGGTCGTCAGACTGTGGT 60.457 57.895 1.59 0.00 46.29 4.16
980 1022 0.320771 GCAATGTGGGTCGTCAGACT 60.321 55.000 0.00 0.00 46.29 3.24
995 1041 4.617486 CCATCGCGCGCATGCAAT 62.617 61.111 32.61 9.61 42.97 3.56
1536 1601 2.079158 CCGTTGTCATCATCAGCACTT 58.921 47.619 0.00 0.00 0.00 3.16
1538 1603 1.442769 ACCGTTGTCATCATCAGCAC 58.557 50.000 0.00 0.00 0.00 4.40
1540 1605 3.181510 GGTAAACCGTTGTCATCATCAGC 60.182 47.826 0.00 0.00 0.00 4.26
1541 1606 3.374058 GGGTAAACCGTTGTCATCATCAG 59.626 47.826 0.00 0.00 36.71 2.90
1542 1607 3.340034 GGGTAAACCGTTGTCATCATCA 58.660 45.455 0.00 0.00 36.71 3.07
1586 1654 2.311070 ATGGGGTGCAGCAGGATCA 61.311 57.895 19.06 7.78 0.00 2.92
1836 1909 3.636231 CACCCGCTCCCCTTGACA 61.636 66.667 0.00 0.00 0.00 3.58
1982 2055 5.215252 TGACCAGAAAAGTCGATCTTCTT 57.785 39.130 4.42 0.00 37.04 2.52
2057 2143 1.647084 GACCCGTCACAAACAGCAC 59.353 57.895 0.00 0.00 0.00 4.40
2338 2436 0.099082 GTTTTTCGTCCGGTGCAACA 59.901 50.000 0.98 0.00 39.98 3.33
2357 2455 1.973281 ACAATGGCCCACGAAGCAG 60.973 57.895 0.00 0.00 0.00 4.24
2563 6405 7.658179 ATGTTTGTGCAATCTATACGGATAG 57.342 36.000 8.50 8.50 37.04 2.08
2631 6473 7.203218 TGATAATGTTCCTAGTGACTCATTCG 58.797 38.462 0.00 0.00 33.08 3.34
2642 6484 8.893219 TTGCTATGTCTTGATAATGTTCCTAG 57.107 34.615 0.00 0.00 0.00 3.02
2689 6531 7.965655 CACAAACTGTCAAACTTATTGTGTACA 59.034 33.333 8.71 0.00 40.55 2.90
2784 6626 5.768164 ACAAGGTCGAAGTGGTTTTATGAAT 59.232 36.000 0.00 0.00 0.00 2.57
2876 6719 1.985473 AGCCTTTGAGCAACATGTGA 58.015 45.000 0.00 0.00 34.23 3.58
2888 6731 8.424274 ACTTAAATCTTTTTCACAAGCCTTTG 57.576 30.769 0.00 0.00 40.24 2.77
2956 6801 1.375908 GTGGCCGAGCATCTTGTCA 60.376 57.895 0.00 0.00 0.00 3.58
2957 6802 2.109126 GGTGGCCGAGCATCTTGTC 61.109 63.158 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.