Multiple sequence alignment - TraesCS6D01G038300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G038300 chr6D 100.000 3527 0 0 1 3527 15809845 15806319 0.000000e+00 6514.0
1 TraesCS6D01G038300 chr6D 90.471 2802 219 23 2 2781 15800262 15797487 0.000000e+00 3651.0
2 TraesCS6D01G038300 chr6D 85.273 1779 245 11 778 2548 15419831 15418062 0.000000e+00 1818.0
3 TraesCS6D01G038300 chr6D 87.968 748 55 10 324 1055 15784687 15783959 0.000000e+00 850.0
4 TraesCS6D01G038300 chr6A 91.524 2796 181 13 1 2779 16401677 16398921 0.000000e+00 3799.0
5 TraesCS6D01G038300 chr6A 90.376 2556 198 11 324 2856 16410708 16408178 0.000000e+00 3314.0
6 TraesCS6D01G038300 chr6A 85.014 1775 250 11 780 2548 16100379 16098615 0.000000e+00 1790.0
7 TraesCS6D01G038300 chr6A 86.341 205 17 5 3036 3236 16408100 16407903 2.760000e-51 213.0
8 TraesCS6D01G038300 chr6B 91.343 2495 192 9 303 2780 27806980 27804493 0.000000e+00 3389.0
9 TraesCS6D01G038300 chr6B 91.253 2458 190 9 343 2781 27820914 27818463 0.000000e+00 3325.0
10 TraesCS6D01G038300 chr6B 88.085 1561 182 3 990 2547 27779790 27778231 0.000000e+00 1849.0
11 TraesCS6D01G038300 chr6B 85.194 1729 238 14 778 2499 27171455 27169738 0.000000e+00 1759.0
12 TraesCS6D01G038300 chr6B 89.124 331 25 6 1 323 27807365 27807038 5.480000e-108 401.0
13 TraesCS6D01G038300 chr6B 87.324 71 5 2 476 546 27781069 27781003 1.050000e-10 78.7
14 TraesCS6D01G038300 chr6B 90.566 53 2 1 3366 3415 43280188 43280240 2.270000e-07 67.6
15 TraesCS6D01G038300 chr5A 93.878 49 3 0 3355 3403 617182647 617182599 1.360000e-09 75.0
16 TraesCS6D01G038300 chr4D 93.878 49 1 1 3354 3400 81986903 81986951 4.880000e-09 73.1
17 TraesCS6D01G038300 chr4D 97.619 42 1 0 3363 3404 497247597 497247556 4.880000e-09 73.1
18 TraesCS6D01G038300 chr3A 90.741 54 4 1 3363 3415 66054936 66054883 1.760000e-08 71.3
19 TraesCS6D01G038300 chr3A 100.000 38 0 0 3363 3400 456381718 456381681 1.760000e-08 71.3
20 TraesCS6D01G038300 chr2D 92.000 50 2 2 3352 3400 426932208 426932160 6.320000e-08 69.4
21 TraesCS6D01G038300 chr2B 89.286 56 5 1 3360 3414 26906381 26906436 6.320000e-08 69.4
22 TraesCS6D01G038300 chr5B 85.294 68 6 4 3366 3432 36731787 36731723 2.270000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G038300 chr6D 15806319 15809845 3526 True 6514.00 6514 100.0000 1 3527 1 chr6D.!!$R4 3526
1 TraesCS6D01G038300 chr6D 15797487 15800262 2775 True 3651.00 3651 90.4710 2 2781 1 chr6D.!!$R3 2779
2 TraesCS6D01G038300 chr6D 15418062 15419831 1769 True 1818.00 1818 85.2730 778 2548 1 chr6D.!!$R1 1770
3 TraesCS6D01G038300 chr6D 15783959 15784687 728 True 850.00 850 87.9680 324 1055 1 chr6D.!!$R2 731
4 TraesCS6D01G038300 chr6A 16398921 16401677 2756 True 3799.00 3799 91.5240 1 2779 1 chr6A.!!$R2 2778
5 TraesCS6D01G038300 chr6A 16098615 16100379 1764 True 1790.00 1790 85.0140 780 2548 1 chr6A.!!$R1 1768
6 TraesCS6D01G038300 chr6A 16407903 16410708 2805 True 1763.50 3314 88.3585 324 3236 2 chr6A.!!$R3 2912
7 TraesCS6D01G038300 chr6B 27818463 27820914 2451 True 3325.00 3325 91.2530 343 2781 1 chr6B.!!$R2 2438
8 TraesCS6D01G038300 chr6B 27804493 27807365 2872 True 1895.00 3389 90.2335 1 2780 2 chr6B.!!$R4 2779
9 TraesCS6D01G038300 chr6B 27169738 27171455 1717 True 1759.00 1759 85.1940 778 2499 1 chr6B.!!$R1 1721
10 TraesCS6D01G038300 chr6B 27778231 27781069 2838 True 963.85 1849 87.7045 476 2547 2 chr6B.!!$R3 2071

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 636 1.064060 AGTGTCAACTCTTTTGCACGC 59.936 47.619 0.00 0.00 34.25 5.34 F
1671 2629 0.902984 TACTCGTGCTCACCATGGGT 60.903 55.000 18.09 3.11 45.92 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2370 3328 0.973632 TCCACTCGGCGGCATAATAT 59.026 50.0 10.53 0.0 0.0 1.28 R
2894 3859 0.033504 TCCGAGGAAGTCACAAGCAC 59.966 55.0 0.00 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 9.878599 AATAGTCTTATGTTTGAACTTGAAACG 57.121 29.630 0.27 0.00 36.30 3.60
116 117 8.775220 TGAACTTGAAACGTTACATGTTTATG 57.225 30.769 2.30 0.74 37.43 1.90
179 180 9.825109 ATGTCCTAAAGCTTTTAGAGATAGTTC 57.175 33.333 18.47 2.98 0.00 3.01
181 182 9.308318 GTCCTAAAGCTTTTAGAGATAGTTCTG 57.692 37.037 18.47 0.00 30.30 3.02
252 254 7.144234 TCCCATAAAATAGGCAGCTAGTAAA 57.856 36.000 0.00 0.00 0.00 2.01
253 255 6.996282 TCCCATAAAATAGGCAGCTAGTAAAC 59.004 38.462 0.00 0.00 0.00 2.01
254 256 6.770785 CCCATAAAATAGGCAGCTAGTAAACA 59.229 38.462 0.00 0.00 0.00 2.83
255 257 7.255139 CCCATAAAATAGGCAGCTAGTAAACAC 60.255 40.741 0.00 0.00 0.00 3.32
256 258 7.282224 CCATAAAATAGGCAGCTAGTAAACACA 59.718 37.037 0.00 0.00 0.00 3.72
257 259 6.496338 AAAATAGGCAGCTAGTAAACACAC 57.504 37.500 0.00 0.00 0.00 3.82
258 260 4.819105 ATAGGCAGCTAGTAAACACACA 57.181 40.909 0.00 0.00 0.00 3.72
259 261 2.767505 AGGCAGCTAGTAAACACACAC 58.232 47.619 0.00 0.00 0.00 3.82
260 262 2.104111 AGGCAGCTAGTAAACACACACA 59.896 45.455 0.00 0.00 0.00 3.72
263 265 3.303132 GCAGCTAGTAAACACACACACAC 60.303 47.826 0.00 0.00 0.00 3.82
264 266 3.868661 CAGCTAGTAAACACACACACACA 59.131 43.478 0.00 0.00 0.00 3.72
332 406 5.830991 AGAGAGAGAGAGAGAGAGAGAGTAC 59.169 48.000 0.00 0.00 0.00 2.73
361 447 3.441163 CAGCCTAATGACGCGTTAACTA 58.559 45.455 15.53 4.57 0.00 2.24
384 470 9.823647 ACTATGGTGTCAGAAGTAATTAATCAG 57.176 33.333 0.00 0.00 0.00 2.90
438 524 2.493675 TGCAGCTACCTAGAGTCAACTG 59.506 50.000 0.00 0.00 0.00 3.16
463 551 7.433131 TGTTAATTTGTACTTAGCGTAGGATCG 59.567 37.037 0.00 0.00 0.00 3.69
467 555 3.558829 TGTACTTAGCGTAGGATCGAGTG 59.441 47.826 0.00 0.00 0.00 3.51
469 557 1.604755 CTTAGCGTAGGATCGAGTGCT 59.395 52.381 6.43 6.43 36.51 4.40
547 636 1.064060 AGTGTCAACTCTTTTGCACGC 59.936 47.619 0.00 0.00 34.25 5.34
602 1528 4.743651 GCCACTGCATATAAGTAGCTTGGA 60.744 45.833 6.82 0.00 35.46 3.53
631 1558 6.402983 CCTGATAAGTTCAACAAGACAGATGC 60.403 42.308 0.00 0.00 32.78 3.91
660 1587 9.171877 GATCCTTGTGAATCTCTTCATTAGTTT 57.828 33.333 0.00 0.00 43.08 2.66
724 1651 9.793259 AACATATAACTAATGGAGTAATGGTGG 57.207 33.333 0.00 0.00 37.44 4.61
960 1909 1.904032 CCCTGAGAGCTCCAAGGAC 59.096 63.158 26.62 7.52 0.00 3.85
979 1934 3.891977 GGACCAAGGAAGAAGAAGCTTTT 59.108 43.478 0.00 0.00 0.00 2.27
987 1942 4.263287 GGAAGAAGAAGCTTTTCTCCCTCT 60.263 45.833 18.16 4.03 33.92 3.69
1290 2248 3.267233 TCAAGGCTGGCCATGGGT 61.267 61.111 15.13 0.00 35.69 4.51
1302 2260 1.527611 CATGGGTGCCATCTGCGAT 60.528 57.895 0.00 0.00 43.15 4.58
1419 2377 2.103094 CACTATCCGCTTCCTCATTGGA 59.897 50.000 0.00 0.00 44.51 3.53
1491 2449 1.198713 ACAGCAAGATCATCGGGACT 58.801 50.000 0.00 0.00 0.00 3.85
1671 2629 0.902984 TACTCGTGCTCACCATGGGT 60.903 55.000 18.09 3.11 45.92 4.51
2091 3049 2.433604 CACATGCATGGTCCTCTACTCT 59.566 50.000 29.41 1.84 0.00 3.24
2106 3064 2.130272 ACTCTATCTGTGTCGAGGCA 57.870 50.000 0.00 0.00 0.00 4.75
2370 3328 3.319198 GGTGCCACCGAGGAGGAA 61.319 66.667 9.83 0.00 45.00 3.36
2373 3331 0.759346 GTGCCACCGAGGAGGAATAT 59.241 55.000 9.83 0.00 45.00 1.28
2430 3388 3.055719 CTCCACAACGCGGGCATT 61.056 61.111 12.47 0.00 0.00 3.56
2436 3394 0.955905 ACAACGCGGGCATTAAGTTT 59.044 45.000 12.47 0.00 0.00 2.66
2487 3445 4.388499 AACGCCATCCTCGCCGTT 62.388 61.111 0.00 0.00 38.87 4.44
2500 3458 4.047125 CCGTTCCTGCCACCCCAT 62.047 66.667 0.00 0.00 0.00 4.00
2534 3492 4.192317 CCCCAGCAAGTATAAGACTCAAC 58.808 47.826 0.00 0.00 37.44 3.18
2714 3673 5.990668 AGGAGGGATGTTGTCTGTAATTAC 58.009 41.667 8.75 8.75 0.00 1.89
2715 3674 5.487488 AGGAGGGATGTTGTCTGTAATTACA 59.513 40.000 17.16 17.16 34.56 2.41
2772 3731 5.185454 TGAGAAAATGTATCGTGCCTTCAT 58.815 37.500 0.00 0.00 0.00 2.57
2781 3740 0.807667 CGTGCCTTCATCTTCCTCGG 60.808 60.000 0.00 0.00 0.00 4.63
2782 3741 0.537188 GTGCCTTCATCTTCCTCGGA 59.463 55.000 0.00 0.00 0.00 4.55
2783 3742 1.066143 GTGCCTTCATCTTCCTCGGAA 60.066 52.381 0.00 0.00 0.00 4.30
2784 3743 1.066143 TGCCTTCATCTTCCTCGGAAC 60.066 52.381 0.00 0.00 0.00 3.62
2805 3770 4.196193 ACGTGTCTCCTTCATTTTCAACA 58.804 39.130 0.00 0.00 0.00 3.33
2861 3826 0.537188 AAGGAAGATGATGCGACGGT 59.463 50.000 0.00 0.00 0.00 4.83
2862 3827 0.179100 AGGAAGATGATGCGACGGTG 60.179 55.000 0.00 0.00 0.00 4.94
2863 3828 1.154205 GGAAGATGATGCGACGGTGG 61.154 60.000 0.00 0.00 0.00 4.61
2864 3829 1.766143 GAAGATGATGCGACGGTGGC 61.766 60.000 8.28 8.28 0.00 5.01
2865 3830 2.202932 GATGATGCGACGGTGGCT 60.203 61.111 16.06 2.05 0.00 4.75
2866 3831 1.815421 GATGATGCGACGGTGGCTT 60.815 57.895 16.06 9.84 0.00 4.35
2867 3832 0.529773 GATGATGCGACGGTGGCTTA 60.530 55.000 16.06 3.26 0.00 3.09
2868 3833 0.810031 ATGATGCGACGGTGGCTTAC 60.810 55.000 16.06 7.95 0.00 2.34
2869 3834 1.447140 GATGCGACGGTGGCTTACA 60.447 57.895 16.06 0.00 0.00 2.41
2870 3835 1.421410 GATGCGACGGTGGCTTACAG 61.421 60.000 16.06 0.00 0.00 2.74
2871 3836 1.884075 ATGCGACGGTGGCTTACAGA 61.884 55.000 16.06 0.00 0.00 3.41
2872 3837 1.153628 GCGACGGTGGCTTACAGAT 60.154 57.895 7.95 0.00 0.00 2.90
2873 3838 0.101759 GCGACGGTGGCTTACAGATA 59.898 55.000 7.95 0.00 0.00 1.98
2874 3839 1.269621 GCGACGGTGGCTTACAGATAT 60.270 52.381 7.95 0.00 0.00 1.63
2875 3840 2.030540 GCGACGGTGGCTTACAGATATA 60.031 50.000 7.95 0.00 0.00 0.86
2876 3841 3.551454 GCGACGGTGGCTTACAGATATAA 60.551 47.826 7.95 0.00 0.00 0.98
2877 3842 4.227538 CGACGGTGGCTTACAGATATAAG 58.772 47.826 0.00 0.00 35.59 1.73
2892 3857 8.795842 ACAGATATAAGCTCGCTAGTATAACT 57.204 34.615 0.00 0.00 0.00 2.24
2893 3858 9.233649 ACAGATATAAGCTCGCTAGTATAACTT 57.766 33.333 0.00 0.00 0.00 2.66
2894 3859 9.497030 CAGATATAAGCTCGCTAGTATAACTTG 57.503 37.037 0.00 0.00 0.00 3.16
2895 3860 9.233649 AGATATAAGCTCGCTAGTATAACTTGT 57.766 33.333 0.00 0.00 0.00 3.16
2898 3863 3.381908 AGCTCGCTAGTATAACTTGTGCT 59.618 43.478 0.00 0.00 32.81 4.40
2901 3866 5.068234 TCGCTAGTATAACTTGTGCTTGT 57.932 39.130 0.00 0.00 32.81 3.16
2926 3894 2.678934 TCGGAAGGTACTGGCGCT 60.679 61.111 7.64 0.00 40.86 5.92
2929 3897 2.202756 GAAGGTACTGGCGCTCCG 60.203 66.667 7.64 0.00 40.86 4.63
2939 3907 1.740296 GGCGCTCCGTACATGTTGT 60.740 57.895 7.64 0.00 0.00 3.32
2947 3915 4.025979 GCTCCGTACATGTTGTAGCATAAC 60.026 45.833 2.30 0.00 32.84 1.89
2948 3916 5.333299 TCCGTACATGTTGTAGCATAACT 57.667 39.130 2.30 0.00 32.84 2.24
2949 3917 5.106442 TCCGTACATGTTGTAGCATAACTG 58.894 41.667 2.30 0.00 32.84 3.16
2950 3918 4.868171 CCGTACATGTTGTAGCATAACTGT 59.132 41.667 2.30 0.00 32.84 3.55
2951 3919 5.350365 CCGTACATGTTGTAGCATAACTGTT 59.650 40.000 2.30 0.00 32.84 3.16
2952 3920 6.532302 CCGTACATGTTGTAGCATAACTGTTA 59.468 38.462 2.30 2.26 32.84 2.41
2953 3921 7.253983 CCGTACATGTTGTAGCATAACTGTTAG 60.254 40.741 2.30 0.47 32.84 2.34
2954 3922 7.486870 CGTACATGTTGTAGCATAACTGTTAGA 59.513 37.037 2.30 0.00 32.84 2.10
2955 3923 7.834068 ACATGTTGTAGCATAACTGTTAGAG 57.166 36.000 6.40 2.89 0.00 2.43
2956 3924 7.386851 ACATGTTGTAGCATAACTGTTAGAGT 58.613 34.615 6.40 0.00 35.94 3.24
2957 3925 8.528643 ACATGTTGTAGCATAACTGTTAGAGTA 58.471 33.333 6.40 0.00 33.09 2.59
2958 3926 9.534565 CATGTTGTAGCATAACTGTTAGAGTAT 57.465 33.333 6.40 0.00 33.09 2.12
2966 3934 7.711339 AGCATAACTGTTAGAGTATAACTTGGC 59.289 37.037 8.98 5.16 33.09 4.52
2967 3935 7.041984 GCATAACTGTTAGAGTATAACTTGGCC 60.042 40.741 8.98 0.00 33.09 5.36
2968 3936 6.622427 AACTGTTAGAGTATAACTTGGCCT 57.378 37.500 3.32 0.00 33.09 5.19
2981 3949 0.110486 TTGGCCTTGTCCTTGTCCTC 59.890 55.000 3.32 0.00 0.00 3.71
2984 3952 0.110486 GCCTTGTCCTTGTCCTCCAA 59.890 55.000 0.00 0.00 0.00 3.53
2986 3954 1.421646 CCTTGTCCTTGTCCTCCAACT 59.578 52.381 0.00 0.00 0.00 3.16
2987 3955 2.637872 CCTTGTCCTTGTCCTCCAACTA 59.362 50.000 0.00 0.00 0.00 2.24
2988 3956 3.557264 CCTTGTCCTTGTCCTCCAACTAC 60.557 52.174 0.00 0.00 0.00 2.73
2989 3957 2.972348 TGTCCTTGTCCTCCAACTACT 58.028 47.619 0.00 0.00 0.00 2.57
2990 3958 3.314693 TGTCCTTGTCCTCCAACTACTT 58.685 45.455 0.00 0.00 0.00 2.24
2991 3959 3.071023 TGTCCTTGTCCTCCAACTACTTG 59.929 47.826 0.00 0.00 0.00 3.16
2992 3960 3.071167 GTCCTTGTCCTCCAACTACTTGT 59.929 47.826 0.00 0.00 0.00 3.16
2993 3961 3.323979 TCCTTGTCCTCCAACTACTTGTC 59.676 47.826 0.00 0.00 0.00 3.18
2994 3962 3.557264 CCTTGTCCTCCAACTACTTGTCC 60.557 52.174 0.00 0.00 0.00 4.02
2995 3963 1.616865 TGTCCTCCAACTACTTGTCCG 59.383 52.381 0.00 0.00 0.00 4.79
2996 3964 1.891150 GTCCTCCAACTACTTGTCCGA 59.109 52.381 0.00 0.00 0.00 4.55
2997 3965 2.496470 GTCCTCCAACTACTTGTCCGAT 59.504 50.000 0.00 0.00 0.00 4.18
2998 3966 2.758979 TCCTCCAACTACTTGTCCGATC 59.241 50.000 0.00 0.00 0.00 3.69
2999 3967 2.159085 CCTCCAACTACTTGTCCGATCC 60.159 54.545 0.00 0.00 0.00 3.36
3000 3968 1.475280 TCCAACTACTTGTCCGATCCG 59.525 52.381 0.00 0.00 0.00 4.18
3010 3978 2.421314 CCGATCCGGTAGCATGCA 59.579 61.111 21.98 2.77 42.73 3.96
3011 3979 1.665916 CCGATCCGGTAGCATGCAG 60.666 63.158 21.98 7.95 42.73 4.41
3012 3980 2.313172 CGATCCGGTAGCATGCAGC 61.313 63.158 21.98 14.09 46.19 5.25
3028 3996 4.778415 GCTGGCGAGCGACGAAGA 62.778 66.667 4.51 0.00 45.77 2.87
3029 3997 2.578178 CTGGCGAGCGACGAAGAG 60.578 66.667 0.00 0.00 45.77 2.85
3030 3998 4.116328 TGGCGAGCGACGAAGAGG 62.116 66.667 0.00 0.00 45.77 3.69
3031 3999 3.812019 GGCGAGCGACGAAGAGGA 61.812 66.667 0.00 0.00 45.77 3.71
3032 4000 2.577378 GCGAGCGACGAAGAGGAC 60.577 66.667 0.00 0.00 45.77 3.85
3033 4001 2.868196 CGAGCGACGAAGAGGACA 59.132 61.111 0.00 0.00 45.77 4.02
3034 4002 1.429825 CGAGCGACGAAGAGGACAT 59.570 57.895 0.00 0.00 45.77 3.06
3035 4003 0.863538 CGAGCGACGAAGAGGACATG 60.864 60.000 0.00 0.00 45.77 3.21
3036 4004 1.142778 GAGCGACGAAGAGGACATGC 61.143 60.000 0.00 0.00 0.00 4.06
3037 4005 1.446099 GCGACGAAGAGGACATGCA 60.446 57.895 0.00 0.00 0.00 3.96
3038 4006 1.416813 GCGACGAAGAGGACATGCAG 61.417 60.000 0.00 0.00 0.00 4.41
3078 4046 1.905049 GCTAGCAATCGTTTTCGCAAC 59.095 47.619 10.63 0.00 43.73 4.17
3086 4054 2.058829 CGTTTTCGCAACCTGCTGGT 62.059 55.000 9.88 9.88 42.25 4.00
3100 4072 3.574396 CCTGCTGGTTATGTAGCTAGCTA 59.426 47.826 20.67 20.67 40.52 3.32
3108 4080 7.434492 TGGTTATGTAGCTAGCTAGAACAATC 58.566 38.462 28.32 22.92 0.00 2.67
3109 4081 6.583050 GGTTATGTAGCTAGCTAGAACAATCG 59.417 42.308 28.32 0.00 0.00 3.34
3132 4104 4.274459 GGCTACATGCTGAAATAAGACCAG 59.726 45.833 0.00 0.00 42.39 4.00
3133 4105 5.118990 GCTACATGCTGAAATAAGACCAGA 58.881 41.667 0.00 0.00 38.95 3.86
3135 4107 6.094048 GCTACATGCTGAAATAAGACCAGAAA 59.906 38.462 0.00 0.00 38.95 2.52
3137 4109 7.288810 ACATGCTGAAATAAGACCAGAAAAA 57.711 32.000 0.00 0.00 0.00 1.94
3138 4110 7.373493 ACATGCTGAAATAAGACCAGAAAAAG 58.627 34.615 0.00 0.00 0.00 2.27
3166 4138 3.955551 AGTAGCTAGGGTCAGACTTTAGC 59.044 47.826 20.38 20.38 37.57 3.09
3171 4143 5.303333 AGCTAGGGTCAGACTTTAGCTTATC 59.697 44.000 22.96 6.19 43.17 1.75
3175 4147 4.985409 GGGTCAGACTTTAGCTTATCGATG 59.015 45.833 8.54 0.00 0.00 3.84
3176 4148 5.221263 GGGTCAGACTTTAGCTTATCGATGA 60.221 44.000 8.54 0.00 0.00 2.92
3177 4149 6.451393 GGTCAGACTTTAGCTTATCGATGAT 58.549 40.000 8.54 0.00 0.00 2.45
3211 4183 4.953940 AAAGCCAGAAAATAAGCAACCA 57.046 36.364 0.00 0.00 0.00 3.67
3213 4185 2.562738 AGCCAGAAAATAAGCAACCACC 59.437 45.455 0.00 0.00 0.00 4.61
3220 4192 3.646736 AATAAGCAACCACCCTACTCC 57.353 47.619 0.00 0.00 0.00 3.85
3236 4208 1.681793 ACTCCGTACCCGATGATCTTG 59.318 52.381 0.00 0.00 35.63 3.02
3237 4209 0.387929 TCCGTACCCGATGATCTTGC 59.612 55.000 0.00 0.00 35.63 4.01
3238 4210 0.104120 CCGTACCCGATGATCTTGCA 59.896 55.000 0.00 0.00 35.63 4.08
3239 4211 1.270305 CCGTACCCGATGATCTTGCAT 60.270 52.381 0.00 0.00 35.63 3.96
3240 4212 1.794701 CGTACCCGATGATCTTGCATG 59.205 52.381 0.00 0.00 35.63 4.06
3241 4213 1.532868 GTACCCGATGATCTTGCATGC 59.467 52.381 11.82 11.82 0.00 4.06
3242 4214 1.162181 ACCCGATGATCTTGCATGCG 61.162 55.000 14.09 0.00 0.00 4.73
3243 4215 1.162181 CCCGATGATCTTGCATGCGT 61.162 55.000 14.09 0.00 0.00 5.24
3244 4216 1.501169 CCGATGATCTTGCATGCGTA 58.499 50.000 14.09 2.39 0.00 4.42
3245 4217 1.193203 CCGATGATCTTGCATGCGTAC 59.807 52.381 14.09 3.37 0.00 3.67
3246 4218 1.136803 CGATGATCTTGCATGCGTACG 60.137 52.381 14.09 11.84 0.00 3.67
3247 4219 1.193203 GATGATCTTGCATGCGTACGG 59.807 52.381 18.39 1.04 0.00 4.02
3248 4220 1.276844 GATCTTGCATGCGTACGGC 59.723 57.895 18.39 12.61 43.96 5.68
3249 4221 2.105960 GATCTTGCATGCGTACGGCC 62.106 60.000 18.39 1.18 42.61 6.13
3250 4222 4.222589 CTTGCATGCGTACGGCCG 62.223 66.667 26.86 26.86 42.61 6.13
3272 4244 3.827634 GCCAGGGGCGATTTAGTG 58.172 61.111 0.00 0.00 39.62 2.74
3273 4245 1.077716 GCCAGGGGCGATTTAGTGT 60.078 57.895 0.00 0.00 39.62 3.55
3274 4246 0.679960 GCCAGGGGCGATTTAGTGTT 60.680 55.000 0.00 0.00 39.62 3.32
3275 4247 1.834188 CCAGGGGCGATTTAGTGTTT 58.166 50.000 0.00 0.00 0.00 2.83
3276 4248 2.942306 GCCAGGGGCGATTTAGTGTTTA 60.942 50.000 0.00 0.00 39.62 2.01
3277 4249 3.551846 CCAGGGGCGATTTAGTGTTTAT 58.448 45.455 0.00 0.00 0.00 1.40
3278 4250 4.710324 CCAGGGGCGATTTAGTGTTTATA 58.290 43.478 0.00 0.00 0.00 0.98
3279 4251 5.313712 CCAGGGGCGATTTAGTGTTTATAT 58.686 41.667 0.00 0.00 0.00 0.86
3280 4252 5.768164 CCAGGGGCGATTTAGTGTTTATATT 59.232 40.000 0.00 0.00 0.00 1.28
3281 4253 6.264518 CCAGGGGCGATTTAGTGTTTATATTT 59.735 38.462 0.00 0.00 0.00 1.40
3282 4254 7.138736 CAGGGGCGATTTAGTGTTTATATTTG 58.861 38.462 0.00 0.00 0.00 2.32
3283 4255 7.012894 CAGGGGCGATTTAGTGTTTATATTTGA 59.987 37.037 0.00 0.00 0.00 2.69
3284 4256 7.724061 AGGGGCGATTTAGTGTTTATATTTGAT 59.276 33.333 0.00 0.00 0.00 2.57
3285 4257 7.807907 GGGGCGATTTAGTGTTTATATTTGATG 59.192 37.037 0.00 0.00 0.00 3.07
3286 4258 7.326063 GGGCGATTTAGTGTTTATATTTGATGC 59.674 37.037 0.00 0.00 0.00 3.91
3287 4259 7.059488 GGCGATTTAGTGTTTATATTTGATGCG 59.941 37.037 0.00 0.00 0.00 4.73
3288 4260 7.796660 GCGATTTAGTGTTTATATTTGATGCGA 59.203 33.333 0.00 0.00 0.00 5.10
3289 4261 9.644993 CGATTTAGTGTTTATATTTGATGCGAA 57.355 29.630 0.00 0.00 0.00 4.70
3295 4267 9.638239 AGTGTTTATATTTGATGCGAAACATTT 57.362 25.926 0.00 0.00 39.84 2.32
3307 4279 9.935682 TGATGCGAAACATTTATATTCTTCTTC 57.064 29.630 0.00 0.00 39.84 2.87
3316 4288 8.661345 ACATTTATATTCTTCTTCTAGACCCCC 58.339 37.037 0.00 0.00 0.00 5.40
3317 4289 8.660435 CATTTATATTCTTCTTCTAGACCCCCA 58.340 37.037 0.00 0.00 0.00 4.96
3318 4290 7.857404 TTATATTCTTCTTCTAGACCCCCAG 57.143 40.000 0.00 0.00 0.00 4.45
3319 4291 3.562108 TTCTTCTTCTAGACCCCCAGT 57.438 47.619 0.00 0.00 0.00 4.00
3320 4292 3.103080 TCTTCTTCTAGACCCCCAGTC 57.897 52.381 0.00 0.00 46.71 3.51
3333 4305 5.999044 GACCCCCAGTCGTATATATCTAGA 58.001 45.833 0.00 0.00 35.30 2.43
3334 4306 5.753716 ACCCCCAGTCGTATATATCTAGAC 58.246 45.833 0.00 0.00 0.00 2.59
3335 4307 5.491800 ACCCCCAGTCGTATATATCTAGACT 59.508 44.000 0.00 10.21 42.20 3.24
3336 4308 6.675746 ACCCCCAGTCGTATATATCTAGACTA 59.324 42.308 13.75 0.00 39.82 2.59
3337 4309 7.147514 ACCCCCAGTCGTATATATCTAGACTAG 60.148 44.444 13.75 2.81 39.82 2.57
3338 4310 7.070946 CCCCCAGTCGTATATATCTAGACTAGA 59.929 44.444 14.53 14.53 39.82 2.43
3339 4311 8.145767 CCCCAGTCGTATATATCTAGACTAGAG 58.854 44.444 17.02 2.85 39.82 2.43
3340 4312 8.698210 CCCAGTCGTATATATCTAGACTAGAGT 58.302 40.741 17.02 10.86 39.82 3.24
3345 4317 9.368674 TCGTATATATCTAGACTAGAGTTGTGC 57.631 37.037 17.02 8.24 38.38 4.57
3346 4318 9.152595 CGTATATATCTAGACTAGAGTTGTGCA 57.847 37.037 17.02 0.00 38.38 4.57
3349 4321 7.889873 ATATCTAGACTAGAGTTGTGCAAGT 57.110 36.000 17.02 0.08 38.38 3.16
3350 4322 8.982091 ATATCTAGACTAGAGTTGTGCAAGTA 57.018 34.615 17.02 2.20 38.38 2.24
3351 4323 6.745159 TCTAGACTAGAGTTGTGCAAGTAG 57.255 41.667 8.17 0.00 0.00 2.57
3352 4324 6.473758 TCTAGACTAGAGTTGTGCAAGTAGA 58.526 40.000 8.17 0.00 0.00 2.59
3353 4325 7.113437 TCTAGACTAGAGTTGTGCAAGTAGAT 58.887 38.462 8.17 0.00 0.00 1.98
3354 4326 8.265764 TCTAGACTAGAGTTGTGCAAGTAGATA 58.734 37.037 8.17 0.00 0.00 1.98
3355 4327 7.090953 AGACTAGAGTTGTGCAAGTAGATAC 57.909 40.000 0.00 0.00 0.00 2.24
3356 4328 6.887545 AGACTAGAGTTGTGCAAGTAGATACT 59.112 38.462 0.00 0.00 38.39 2.12
3357 4329 7.066525 AGACTAGAGTTGTGCAAGTAGATACTC 59.933 40.741 0.00 0.00 34.99 2.59
3358 4330 5.331876 AGAGTTGTGCAAGTAGATACTCC 57.668 43.478 0.00 0.00 34.99 3.85
3359 4331 4.160626 AGAGTTGTGCAAGTAGATACTCCC 59.839 45.833 0.00 0.00 34.99 4.30
3360 4332 4.097418 AGTTGTGCAAGTAGATACTCCCT 58.903 43.478 0.00 0.00 34.99 4.20
3361 4333 4.160626 AGTTGTGCAAGTAGATACTCCCTC 59.839 45.833 0.00 0.00 34.99 4.30
3362 4334 2.688446 TGTGCAAGTAGATACTCCCTCG 59.312 50.000 0.00 0.00 34.99 4.63
3363 4335 2.688958 GTGCAAGTAGATACTCCCTCGT 59.311 50.000 0.00 0.00 34.99 4.18
3364 4336 2.688446 TGCAAGTAGATACTCCCTCGTG 59.312 50.000 0.00 0.00 34.99 4.35
3365 4337 2.688958 GCAAGTAGATACTCCCTCGTGT 59.311 50.000 0.00 0.00 34.99 4.49
3366 4338 3.881688 GCAAGTAGATACTCCCTCGTGTA 59.118 47.826 0.00 0.00 34.99 2.90
3367 4339 4.337555 GCAAGTAGATACTCCCTCGTGTAA 59.662 45.833 0.00 0.00 34.99 2.41
3368 4340 5.163581 GCAAGTAGATACTCCCTCGTGTAAA 60.164 44.000 0.00 0.00 34.99 2.01
3369 4341 6.626623 GCAAGTAGATACTCCCTCGTGTAAAA 60.627 42.308 0.00 0.00 34.99 1.52
3370 4342 7.318141 CAAGTAGATACTCCCTCGTGTAAAAA 58.682 38.462 0.00 0.00 34.99 1.94
3392 4364 7.639162 AAAACGCTCTTATATTATGAGACGG 57.361 36.000 16.71 7.11 35.72 4.79
3393 4365 6.570672 AACGCTCTTATATTATGAGACGGA 57.429 37.500 16.71 0.00 35.72 4.69
3394 4366 6.184580 ACGCTCTTATATTATGAGACGGAG 57.815 41.667 16.71 6.33 35.72 4.63
3395 4367 5.124138 ACGCTCTTATATTATGAGACGGAGG 59.876 44.000 16.71 3.20 35.72 4.30
3396 4368 5.449314 CGCTCTTATATTATGAGACGGAGGG 60.449 48.000 0.00 0.00 33.20 4.30
3397 4369 5.652891 GCTCTTATATTATGAGACGGAGGGA 59.347 44.000 0.00 0.00 33.20 4.20
3398 4370 6.183360 GCTCTTATATTATGAGACGGAGGGAG 60.183 46.154 0.00 0.00 33.20 4.30
3399 4371 6.791371 TCTTATATTATGAGACGGAGGGAGT 58.209 40.000 0.00 0.00 0.00 3.85
3400 4372 6.659668 TCTTATATTATGAGACGGAGGGAGTG 59.340 42.308 0.00 0.00 0.00 3.51
3401 4373 1.776662 TTATGAGACGGAGGGAGTGG 58.223 55.000 0.00 0.00 0.00 4.00
3402 4374 0.629596 TATGAGACGGAGGGAGTGGT 59.370 55.000 0.00 0.00 0.00 4.16
3403 4375 0.629596 ATGAGACGGAGGGAGTGGTA 59.370 55.000 0.00 0.00 0.00 3.25
3404 4376 0.406750 TGAGACGGAGGGAGTGGTAA 59.593 55.000 0.00 0.00 0.00 2.85
3405 4377 1.006758 TGAGACGGAGGGAGTGGTAAT 59.993 52.381 0.00 0.00 0.00 1.89
3406 4378 2.108970 GAGACGGAGGGAGTGGTAATT 58.891 52.381 0.00 0.00 0.00 1.40
3407 4379 1.831736 AGACGGAGGGAGTGGTAATTG 59.168 52.381 0.00 0.00 0.00 2.32
3408 4380 1.829222 GACGGAGGGAGTGGTAATTGA 59.171 52.381 0.00 0.00 0.00 2.57
3409 4381 2.434702 GACGGAGGGAGTGGTAATTGAT 59.565 50.000 0.00 0.00 0.00 2.57
3410 4382 2.170607 ACGGAGGGAGTGGTAATTGATG 59.829 50.000 0.00 0.00 0.00 3.07
3411 4383 2.434336 CGGAGGGAGTGGTAATTGATGA 59.566 50.000 0.00 0.00 0.00 2.92
3412 4384 3.493350 CGGAGGGAGTGGTAATTGATGAG 60.493 52.174 0.00 0.00 0.00 2.90
3413 4385 3.456277 GGAGGGAGTGGTAATTGATGAGT 59.544 47.826 0.00 0.00 0.00 3.41
3414 4386 4.080299 GGAGGGAGTGGTAATTGATGAGTT 60.080 45.833 0.00 0.00 0.00 3.01
3415 4387 4.848357 AGGGAGTGGTAATTGATGAGTTG 58.152 43.478 0.00 0.00 0.00 3.16
3416 4388 4.536090 AGGGAGTGGTAATTGATGAGTTGA 59.464 41.667 0.00 0.00 0.00 3.18
3417 4389 5.192522 AGGGAGTGGTAATTGATGAGTTGAT 59.807 40.000 0.00 0.00 0.00 2.57
3418 4390 5.297776 GGGAGTGGTAATTGATGAGTTGATG 59.702 44.000 0.00 0.00 0.00 3.07
3419 4391 5.220931 GGAGTGGTAATTGATGAGTTGATGC 60.221 44.000 0.00 0.00 0.00 3.91
3420 4392 4.641989 AGTGGTAATTGATGAGTTGATGCC 59.358 41.667 0.00 0.00 0.00 4.40
3421 4393 4.398988 GTGGTAATTGATGAGTTGATGCCA 59.601 41.667 0.00 0.00 0.00 4.92
3422 4394 5.015515 TGGTAATTGATGAGTTGATGCCAA 58.984 37.500 0.00 0.00 0.00 4.52
3433 4405 4.820284 GTTGATGCCAACTAATAGAGGC 57.180 45.455 17.13 17.13 46.84 4.70
3434 4406 4.455606 GTTGATGCCAACTAATAGAGGCT 58.544 43.478 21.76 12.10 46.84 4.58
3435 4407 4.884164 GTTGATGCCAACTAATAGAGGCTT 59.116 41.667 21.76 17.62 46.84 4.35
3436 4408 6.055588 GTTGATGCCAACTAATAGAGGCTTA 58.944 40.000 21.76 9.33 46.84 3.09
3437 4409 6.203723 GTTGATGCCAACTAATAGAGGCTTAG 59.796 42.308 21.76 3.84 46.84 2.18
3438 4410 8.645498 GTTGATGCCAACTAATAGAGGCTTAGG 61.645 44.444 21.76 4.44 46.84 2.69
3439 4411 4.957684 GCCAACTAATAGAGGCTTAGGA 57.042 45.455 16.84 0.00 43.70 2.94
3440 4412 4.633175 GCCAACTAATAGAGGCTTAGGAC 58.367 47.826 16.84 0.00 43.70 3.85
3441 4413 4.345547 GCCAACTAATAGAGGCTTAGGACT 59.654 45.833 16.84 0.00 43.70 3.85
3442 4414 5.163290 GCCAACTAATAGAGGCTTAGGACTT 60.163 44.000 16.84 0.00 43.70 3.01
3443 4415 6.284459 CCAACTAATAGAGGCTTAGGACTTG 58.716 44.000 0.00 0.00 31.75 3.16
3444 4416 6.284459 CAACTAATAGAGGCTTAGGACTTGG 58.716 44.000 0.00 0.00 31.75 3.61
3445 4417 4.902448 ACTAATAGAGGCTTAGGACTTGGG 59.098 45.833 0.00 0.00 31.75 4.12
3446 4418 3.708236 ATAGAGGCTTAGGACTTGGGA 57.292 47.619 0.00 0.00 0.00 4.37
3447 4419 1.574263 AGAGGCTTAGGACTTGGGAC 58.426 55.000 0.00 0.00 0.00 4.46
3448 4420 0.542333 GAGGCTTAGGACTTGGGACC 59.458 60.000 0.00 0.00 0.00 4.46
3449 4421 0.178873 AGGCTTAGGACTTGGGACCA 60.179 55.000 0.00 0.00 0.00 4.02
3450 4422 0.035343 GGCTTAGGACTTGGGACCAC 60.035 60.000 0.00 0.00 0.00 4.16
3451 4423 0.391263 GCTTAGGACTTGGGACCACG 60.391 60.000 0.00 0.00 0.00 4.94
3452 4424 1.263356 CTTAGGACTTGGGACCACGA 58.737 55.000 1.49 0.00 0.00 4.35
3453 4425 1.621814 CTTAGGACTTGGGACCACGAA 59.378 52.381 1.49 0.00 0.00 3.85
3454 4426 1.946984 TAGGACTTGGGACCACGAAT 58.053 50.000 1.49 0.00 0.00 3.34
3455 4427 1.064825 AGGACTTGGGACCACGAATT 58.935 50.000 1.49 0.00 0.00 2.17
3456 4428 1.003233 AGGACTTGGGACCACGAATTC 59.997 52.381 1.49 0.00 0.00 2.17
3457 4429 1.076332 GACTTGGGACCACGAATTCG 58.924 55.000 25.64 25.64 46.33 3.34
3471 4443 4.634349 CGAATTCGTACGGTCTTTCAAA 57.366 40.909 19.67 0.00 34.11 2.69
3472 4444 4.380290 CGAATTCGTACGGTCTTTCAAAC 58.620 43.478 19.67 0.00 34.11 2.93
3473 4445 4.149396 CGAATTCGTACGGTCTTTCAAACT 59.851 41.667 19.67 0.00 34.11 2.66
3474 4446 5.587033 AATTCGTACGGTCTTTCAAACTC 57.413 39.130 16.52 0.00 0.00 3.01
3475 4447 3.713858 TCGTACGGTCTTTCAAACTCA 57.286 42.857 16.52 0.00 0.00 3.41
3476 4448 4.247267 TCGTACGGTCTTTCAAACTCAT 57.753 40.909 16.52 0.00 0.00 2.90
3477 4449 4.232221 TCGTACGGTCTTTCAAACTCATC 58.768 43.478 16.52 0.00 0.00 2.92
3478 4450 3.985279 CGTACGGTCTTTCAAACTCATCA 59.015 43.478 7.57 0.00 0.00 3.07
3479 4451 4.446385 CGTACGGTCTTTCAAACTCATCAA 59.554 41.667 7.57 0.00 0.00 2.57
3480 4452 5.050634 CGTACGGTCTTTCAAACTCATCAAA 60.051 40.000 7.57 0.00 0.00 2.69
3481 4453 5.828299 ACGGTCTTTCAAACTCATCAAAA 57.172 34.783 0.00 0.00 0.00 2.44
3482 4454 5.821204 ACGGTCTTTCAAACTCATCAAAAG 58.179 37.500 0.00 0.00 0.00 2.27
3483 4455 5.588648 ACGGTCTTTCAAACTCATCAAAAGA 59.411 36.000 0.00 0.00 34.51 2.52
3484 4456 6.263168 ACGGTCTTTCAAACTCATCAAAAGAT 59.737 34.615 0.00 0.00 38.01 2.40
3485 4457 6.580041 CGGTCTTTCAAACTCATCAAAAGATG 59.420 38.462 0.00 0.00 38.01 2.90
3486 4458 6.364435 GGTCTTTCAAACTCATCAAAAGATGC 59.636 38.462 0.72 0.00 38.01 3.91
3487 4459 6.087291 GTCTTTCAAACTCATCAAAAGATGCG 59.913 38.462 0.72 0.00 38.01 4.73
3488 4460 5.437289 TTCAAACTCATCAAAAGATGCGT 57.563 34.783 0.72 0.00 32.58 5.24
3489 4461 5.034554 TCAAACTCATCAAAAGATGCGTC 57.965 39.130 0.00 0.00 30.28 5.19
3490 4462 4.756642 TCAAACTCATCAAAAGATGCGTCT 59.243 37.500 1.48 1.48 30.28 4.18
3491 4463 5.931724 TCAAACTCATCAAAAGATGCGTCTA 59.068 36.000 9.33 0.00 33.30 2.59
3492 4464 5.786401 AACTCATCAAAAGATGCGTCTAC 57.214 39.130 9.33 0.00 33.30 2.59
3493 4465 3.859961 ACTCATCAAAAGATGCGTCTACG 59.140 43.478 9.33 0.81 43.27 3.51
3494 4466 4.104696 TCATCAAAAGATGCGTCTACGA 57.895 40.909 9.33 6.60 43.02 3.43
3495 4467 4.682787 TCATCAAAAGATGCGTCTACGAT 58.317 39.130 9.33 8.64 43.02 3.73
3496 4468 4.740205 TCATCAAAAGATGCGTCTACGATC 59.260 41.667 9.33 6.74 43.02 3.69
3497 4469 4.104696 TCAAAAGATGCGTCTACGATCA 57.895 40.909 9.33 0.00 43.02 2.92
3498 4470 4.682787 TCAAAAGATGCGTCTACGATCAT 58.317 39.130 9.33 1.00 43.02 2.45
3499 4471 4.740205 TCAAAAGATGCGTCTACGATCATC 59.260 41.667 9.33 10.27 43.02 2.92
3500 4472 4.576216 AAAGATGCGTCTACGATCATCT 57.424 40.909 9.33 15.44 44.81 2.90
3501 4473 3.822594 AGATGCGTCTACGATCATCTC 57.177 47.619 6.67 0.11 41.75 2.75
3502 4474 3.407698 AGATGCGTCTACGATCATCTCT 58.592 45.455 6.67 1.94 41.75 3.10
3503 4475 3.818210 AGATGCGTCTACGATCATCTCTT 59.182 43.478 6.67 1.01 41.75 2.85
3504 4476 4.277174 AGATGCGTCTACGATCATCTCTTT 59.723 41.667 6.67 0.75 41.75 2.52
3505 4477 3.953766 TGCGTCTACGATCATCTCTTTC 58.046 45.455 6.71 0.00 43.02 2.62
3506 4478 2.968006 GCGTCTACGATCATCTCTTTCG 59.032 50.000 6.71 0.00 43.02 3.46
3507 4479 2.968006 CGTCTACGATCATCTCTTTCGC 59.032 50.000 0.00 0.00 43.02 4.70
3508 4480 3.303461 CGTCTACGATCATCTCTTTCGCT 60.303 47.826 0.00 0.00 43.02 4.93
3509 4481 4.602995 GTCTACGATCATCTCTTTCGCTT 58.397 43.478 0.00 0.00 36.37 4.68
3510 4482 4.439449 GTCTACGATCATCTCTTTCGCTTG 59.561 45.833 0.00 0.00 36.37 4.01
3511 4483 1.929836 ACGATCATCTCTTTCGCTTGC 59.070 47.619 0.00 0.00 36.37 4.01
3512 4484 1.071633 CGATCATCTCTTTCGCTTGCG 60.072 52.381 8.87 8.87 0.00 4.85
3513 4485 1.929836 GATCATCTCTTTCGCTTGCGT 59.070 47.619 14.70 0.00 0.00 5.24
3514 4486 1.070821 TCATCTCTTTCGCTTGCGTG 58.929 50.000 14.70 4.26 0.00 5.34
3515 4487 0.792640 CATCTCTTTCGCTTGCGTGT 59.207 50.000 14.70 0.00 0.00 4.49
3516 4488 1.071605 ATCTCTTTCGCTTGCGTGTC 58.928 50.000 14.70 0.00 0.00 3.67
3517 4489 0.944311 TCTCTTTCGCTTGCGTGTCC 60.944 55.000 14.70 0.00 0.00 4.02
3518 4490 0.946221 CTCTTTCGCTTGCGTGTCCT 60.946 55.000 14.70 0.00 0.00 3.85
3519 4491 1.205064 CTTTCGCTTGCGTGTCCTG 59.795 57.895 14.70 0.00 0.00 3.86
3520 4492 1.221466 CTTTCGCTTGCGTGTCCTGA 61.221 55.000 14.70 0.00 0.00 3.86
3521 4493 0.602638 TTTCGCTTGCGTGTCCTGAT 60.603 50.000 14.70 0.00 0.00 2.90
3522 4494 0.245266 TTCGCTTGCGTGTCCTGATA 59.755 50.000 14.70 0.00 0.00 2.15
3523 4495 0.457853 TCGCTTGCGTGTCCTGATAC 60.458 55.000 14.70 0.00 0.00 2.24
3524 4496 1.421410 CGCTTGCGTGTCCTGATACC 61.421 60.000 6.86 0.00 0.00 2.73
3525 4497 1.090052 GCTTGCGTGTCCTGATACCC 61.090 60.000 0.00 0.00 0.00 3.69
3526 4498 0.249120 CTTGCGTGTCCTGATACCCA 59.751 55.000 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 8.428186 ACGTTTCAAGTTCAAACATAAGACTA 57.572 30.769 3.20 0.00 33.99 2.59
84 85 9.227490 CATGTAACGTTTCAAGTTCAAACATAA 57.773 29.630 11.76 0.00 33.99 1.90
179 180 3.587797 AGCCAATGAAAATCTGCACAG 57.412 42.857 0.00 0.00 0.00 3.66
181 182 4.563061 AGAAAGCCAATGAAAATCTGCAC 58.437 39.130 0.00 0.00 0.00 4.57
240 242 2.223377 GTGTGTGTGTTTACTAGCTGCC 59.777 50.000 0.00 0.00 0.00 4.85
252 254 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
253 255 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
254 256 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
255 257 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
256 258 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
257 259 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
258 260 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
259 261 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
260 262 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
263 265 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
264 266 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
332 406 2.205074 CGTCATTAGGCTGCTAACTGG 58.795 52.381 0.00 0.00 0.00 4.00
361 447 7.056635 CCCTGATTAATTACTTCTGACACCAT 58.943 38.462 0.00 0.00 0.00 3.55
399 485 1.748493 GCAGAGCTAGCTGTAGTCTGT 59.252 52.381 24.99 0.00 37.08 3.41
438 524 7.645340 TCGATCCTACGCTAAGTACAAATTAAC 59.355 37.037 0.00 0.00 0.00 2.01
463 551 4.442706 TGAGATATTCCGGAAAAGCACTC 58.557 43.478 23.08 22.19 0.00 3.51
467 555 4.035675 CAGGTTGAGATATTCCGGAAAAGC 59.964 45.833 23.08 18.31 0.00 3.51
469 557 3.945285 GCAGGTTGAGATATTCCGGAAAA 59.055 43.478 23.08 6.83 0.00 2.29
547 636 2.987149 CTGTTGCAAGTACGTACAGGAG 59.013 50.000 26.55 13.92 34.14 3.69
602 1528 4.762251 GTCTTGTTGAACTTATCAGGGCTT 59.238 41.667 0.00 0.00 39.77 4.35
631 1558 4.498241 TGAAGAGATTCACAAGGATCGTG 58.502 43.478 0.00 0.00 35.63 4.35
660 1587 7.655732 TCTGTTTCTTAATTTGTGAGATCGTCA 59.344 33.333 0.00 0.00 0.00 4.35
793 1725 5.945784 GGCATATTCTTTGGCATATACTCCA 59.054 40.000 0.00 0.00 39.31 3.86
943 1892 0.906756 TGGTCCTTGGAGCTCTCAGG 60.907 60.000 20.19 20.19 0.00 3.86
960 1909 4.217334 GGAGAAAAGCTTCTTCTTCCTTGG 59.783 45.833 18.62 0.00 42.19 3.61
987 1942 4.079844 TCCATTTCCATATCCTCTTGTGCA 60.080 41.667 0.00 0.00 0.00 4.57
1290 2248 1.342496 CCTAGAAGATCGCAGATGGCA 59.658 52.381 0.00 0.00 45.12 4.92
1302 2260 1.512996 CGTATCGCGGGCCTAGAAGA 61.513 60.000 6.13 1.40 36.85 2.87
1419 2377 1.212935 ACAAAGGTGGCAAGTGAGACT 59.787 47.619 0.00 0.00 0.00 3.24
1470 2428 2.766263 AGTCCCGATGATCTTGCTGTTA 59.234 45.455 0.00 0.00 0.00 2.41
1671 2629 1.361204 TGCCATCAGGAAGGTCTTGA 58.639 50.000 0.00 0.00 36.90 3.02
1758 2716 1.300311 CGTGCGGTAGTTGGTGACA 60.300 57.895 0.00 0.00 39.83 3.58
2091 3049 1.313091 ACGCTGCCTCGACACAGATA 61.313 55.000 12.92 0.00 35.90 1.98
2106 3064 3.299977 TAGACGGCACCACACGCT 61.300 61.111 0.00 0.00 0.00 5.07
2205 3163 4.991687 GTGAAGAAGAGGAACTGTGTAAGG 59.008 45.833 0.00 0.00 41.55 2.69
2208 3166 3.635373 ACGTGAAGAAGAGGAACTGTGTA 59.365 43.478 0.00 0.00 41.55 2.90
2370 3328 0.973632 TCCACTCGGCGGCATAATAT 59.026 50.000 10.53 0.00 0.00 1.28
2373 3331 2.185867 GTCCACTCGGCGGCATAA 59.814 61.111 10.53 0.00 0.00 1.90
2430 3388 1.144969 CGCTGTTCTCGGCAAACTTA 58.855 50.000 0.17 0.00 45.42 2.24
2436 3394 2.258591 GAGACGCTGTTCTCGGCA 59.741 61.111 0.17 0.00 45.42 5.69
2487 3445 2.124768 TGAGATGGGGTGGCAGGA 59.875 61.111 0.00 0.00 0.00 3.86
2500 3458 3.680786 CTGGGGCGTGTCGTGAGA 61.681 66.667 0.00 0.00 38.16 3.27
2570 3528 9.999009 ACGTACATATGCAGTGTATATACATAC 57.001 33.333 18.27 11.70 38.63 2.39
2609 3567 2.933834 ACCACACACCTAGGCCCC 60.934 66.667 9.30 0.00 0.00 5.80
2714 3673 9.770097 ATCATGTCCTAACATATTACAAGACTG 57.230 33.333 0.00 0.00 44.41 3.51
2715 3674 9.770097 CATCATGTCCTAACATATTACAAGACT 57.230 33.333 0.00 0.00 44.41 3.24
2749 3708 4.574892 TGAAGGCACGATACATTTTCTCA 58.425 39.130 0.00 0.00 0.00 3.27
2772 3731 0.879765 GAGACACGTTCCGAGGAAGA 59.120 55.000 4.57 0.00 34.49 2.87
2781 3740 5.205565 GTTGAAAATGAAGGAGACACGTTC 58.794 41.667 0.00 0.00 41.82 3.95
2782 3741 4.638421 TGTTGAAAATGAAGGAGACACGTT 59.362 37.500 0.00 0.00 0.00 3.99
2783 3742 4.196193 TGTTGAAAATGAAGGAGACACGT 58.804 39.130 0.00 0.00 0.00 4.49
2784 3743 4.811555 TGTTGAAAATGAAGGAGACACG 57.188 40.909 0.00 0.00 0.00 4.49
2785 3744 6.507023 ACAATGTTGAAAATGAAGGAGACAC 58.493 36.000 0.00 0.00 0.00 3.67
2839 3804 2.420022 CCGTCGCATCATCTTCCTTTTT 59.580 45.455 0.00 0.00 0.00 1.94
2843 3808 0.179100 CACCGTCGCATCATCTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
2856 3821 3.988517 GCTTATATCTGTAAGCCACCGTC 59.011 47.826 7.28 0.00 46.84 4.79
2866 3831 9.887629 AGTTATACTAGCGAGCTTATATCTGTA 57.112 33.333 1.86 0.00 0.00 2.74
2867 3832 8.795842 AGTTATACTAGCGAGCTTATATCTGT 57.204 34.615 1.86 0.00 0.00 3.41
2868 3833 9.497030 CAAGTTATACTAGCGAGCTTATATCTG 57.503 37.037 1.86 0.00 0.00 2.90
2869 3834 9.233649 ACAAGTTATACTAGCGAGCTTATATCT 57.766 33.333 1.86 2.89 0.00 1.98
2870 3835 9.279904 CACAAGTTATACTAGCGAGCTTATATC 57.720 37.037 1.86 0.74 0.00 1.63
2871 3836 7.755822 GCACAAGTTATACTAGCGAGCTTATAT 59.244 37.037 1.86 4.68 0.00 0.86
2872 3837 7.040617 AGCACAAGTTATACTAGCGAGCTTATA 60.041 37.037 1.86 0.00 0.00 0.98
2873 3838 5.921408 GCACAAGTTATACTAGCGAGCTTAT 59.079 40.000 1.86 0.00 0.00 1.73
2874 3839 5.067413 AGCACAAGTTATACTAGCGAGCTTA 59.933 40.000 1.86 0.00 0.00 3.09
2875 3840 4.113354 GCACAAGTTATACTAGCGAGCTT 58.887 43.478 1.86 0.00 0.00 3.74
2876 3841 3.381908 AGCACAAGTTATACTAGCGAGCT 59.618 43.478 2.25 2.25 0.00 4.09
2877 3842 3.707793 AGCACAAGTTATACTAGCGAGC 58.292 45.455 0.00 0.00 0.00 5.03
2878 3843 5.004821 CACAAGCACAAGTTATACTAGCGAG 59.995 44.000 0.00 0.00 0.00 5.03
2879 3844 4.862574 CACAAGCACAAGTTATACTAGCGA 59.137 41.667 0.00 0.00 0.00 4.93
2880 3845 4.862574 TCACAAGCACAAGTTATACTAGCG 59.137 41.667 0.00 0.00 0.00 4.26
2881 3846 5.869888 AGTCACAAGCACAAGTTATACTAGC 59.130 40.000 0.00 0.00 0.00 3.42
2882 3847 7.063544 GGAAGTCACAAGCACAAGTTATACTAG 59.936 40.741 0.00 0.00 0.00 2.57
2883 3848 6.872020 GGAAGTCACAAGCACAAGTTATACTA 59.128 38.462 0.00 0.00 0.00 1.82
2884 3849 5.701290 GGAAGTCACAAGCACAAGTTATACT 59.299 40.000 0.00 0.00 0.00 2.12
2885 3850 5.701290 AGGAAGTCACAAGCACAAGTTATAC 59.299 40.000 0.00 0.00 0.00 1.47
2886 3851 5.865085 AGGAAGTCACAAGCACAAGTTATA 58.135 37.500 0.00 0.00 0.00 0.98
2887 3852 4.718961 AGGAAGTCACAAGCACAAGTTAT 58.281 39.130 0.00 0.00 0.00 1.89
2888 3853 4.127171 GAGGAAGTCACAAGCACAAGTTA 58.873 43.478 0.00 0.00 0.00 2.24
2889 3854 2.945668 GAGGAAGTCACAAGCACAAGTT 59.054 45.455 0.00 0.00 0.00 2.66
2890 3855 2.565841 GAGGAAGTCACAAGCACAAGT 58.434 47.619 0.00 0.00 0.00 3.16
2891 3856 1.528586 CGAGGAAGTCACAAGCACAAG 59.471 52.381 0.00 0.00 0.00 3.16
2892 3857 1.581934 CGAGGAAGTCACAAGCACAA 58.418 50.000 0.00 0.00 0.00 3.33
2893 3858 0.249868 CCGAGGAAGTCACAAGCACA 60.250 55.000 0.00 0.00 0.00 4.57
2894 3859 0.033504 TCCGAGGAAGTCACAAGCAC 59.966 55.000 0.00 0.00 0.00 4.40
2895 3860 0.756294 TTCCGAGGAAGTCACAAGCA 59.244 50.000 0.00 0.00 0.00 3.91
2926 3894 5.106442 CAGTTATGCTACAACATGTACGGA 58.894 41.667 0.00 0.00 0.00 4.69
2929 3897 8.697846 TCTAACAGTTATGCTACAACATGTAC 57.302 34.615 0.00 0.00 0.00 2.90
2947 3915 6.407202 ACAAGGCCAAGTTATACTCTAACAG 58.593 40.000 5.01 0.00 0.00 3.16
2948 3916 6.368779 ACAAGGCCAAGTTATACTCTAACA 57.631 37.500 5.01 0.00 0.00 2.41
2949 3917 5.816258 GGACAAGGCCAAGTTATACTCTAAC 59.184 44.000 5.01 0.00 0.00 2.34
2950 3918 5.724854 AGGACAAGGCCAAGTTATACTCTAA 59.275 40.000 5.01 0.00 0.00 2.10
2951 3919 5.278061 AGGACAAGGCCAAGTTATACTCTA 58.722 41.667 5.01 0.00 0.00 2.43
2952 3920 4.104831 AGGACAAGGCCAAGTTATACTCT 58.895 43.478 5.01 0.00 0.00 3.24
2953 3921 4.489306 AGGACAAGGCCAAGTTATACTC 57.511 45.455 5.01 0.00 0.00 2.59
2954 3922 4.042934 ACAAGGACAAGGCCAAGTTATACT 59.957 41.667 5.01 0.00 0.00 2.12
2955 3923 4.332828 ACAAGGACAAGGCCAAGTTATAC 58.667 43.478 5.01 0.00 0.00 1.47
2956 3924 4.566907 GGACAAGGACAAGGCCAAGTTATA 60.567 45.833 5.01 0.00 0.00 0.98
2957 3925 3.421844 GACAAGGACAAGGCCAAGTTAT 58.578 45.455 5.01 0.00 0.00 1.89
2958 3926 2.488347 GGACAAGGACAAGGCCAAGTTA 60.488 50.000 5.01 0.00 0.00 2.24
2959 3927 1.692411 GACAAGGACAAGGCCAAGTT 58.308 50.000 5.01 0.00 0.00 2.66
2960 3928 0.178990 GGACAAGGACAAGGCCAAGT 60.179 55.000 5.01 1.60 0.00 3.16
2961 3929 0.111253 AGGACAAGGACAAGGCCAAG 59.889 55.000 5.01 0.00 0.00 3.61
2962 3930 0.110486 GAGGACAAGGACAAGGCCAA 59.890 55.000 5.01 0.00 0.00 4.52
2963 3931 1.761174 GAGGACAAGGACAAGGCCA 59.239 57.895 5.01 0.00 0.00 5.36
2964 3932 1.002011 GGAGGACAAGGACAAGGCC 60.002 63.158 0.00 0.00 0.00 5.19
2965 3933 0.110486 TTGGAGGACAAGGACAAGGC 59.890 55.000 0.00 0.00 33.18 4.35
2966 3934 1.421646 AGTTGGAGGACAAGGACAAGG 59.578 52.381 0.00 0.00 40.38 3.61
2967 3935 2.938956 AGTTGGAGGACAAGGACAAG 57.061 50.000 0.00 0.00 40.38 3.16
2968 3936 3.314693 AGTAGTTGGAGGACAAGGACAA 58.685 45.455 0.00 0.00 40.38 3.18
2981 3949 1.922570 CGGATCGGACAAGTAGTTGG 58.077 55.000 14.69 0.00 38.07 3.77
2994 3962 2.313172 GCTGCATGCTACCGGATCG 61.313 63.158 20.33 0.00 38.95 3.69
2995 3963 3.647824 GCTGCATGCTACCGGATC 58.352 61.111 20.33 0.00 38.95 3.36
3010 3978 4.785512 CTTCGTCGCTCGCCAGCT 62.786 66.667 0.79 0.00 44.40 4.24
3011 3979 4.778415 TCTTCGTCGCTCGCCAGC 62.778 66.667 0.00 0.00 42.96 4.85
3012 3980 2.578178 CTCTTCGTCGCTCGCCAG 60.578 66.667 0.00 0.00 39.67 4.85
3013 3981 4.116328 CCTCTTCGTCGCTCGCCA 62.116 66.667 0.00 0.00 39.67 5.69
3014 3982 3.812019 TCCTCTTCGTCGCTCGCC 61.812 66.667 0.00 0.00 39.67 5.54
3015 3983 2.577378 GTCCTCTTCGTCGCTCGC 60.577 66.667 0.00 0.00 39.67 5.03
3016 3984 0.863538 CATGTCCTCTTCGTCGCTCG 60.864 60.000 0.00 0.00 41.41 5.03
3017 3985 1.142778 GCATGTCCTCTTCGTCGCTC 61.143 60.000 0.00 0.00 0.00 5.03
3018 3986 1.153745 GCATGTCCTCTTCGTCGCT 60.154 57.895 0.00 0.00 0.00 4.93
3019 3987 1.416813 CTGCATGTCCTCTTCGTCGC 61.417 60.000 0.00 0.00 0.00 5.19
3020 3988 0.171231 TCTGCATGTCCTCTTCGTCG 59.829 55.000 0.00 0.00 0.00 5.12
3021 3989 1.067565 TGTCTGCATGTCCTCTTCGTC 60.068 52.381 0.00 0.00 0.00 4.20
3022 3990 0.969149 TGTCTGCATGTCCTCTTCGT 59.031 50.000 0.00 0.00 0.00 3.85
3023 3991 1.728971 GTTGTCTGCATGTCCTCTTCG 59.271 52.381 0.00 0.00 0.00 3.79
3024 3992 3.051081 AGTTGTCTGCATGTCCTCTTC 57.949 47.619 0.00 0.00 0.00 2.87
3025 3993 4.623932 TTAGTTGTCTGCATGTCCTCTT 57.376 40.909 0.00 0.00 0.00 2.85
3026 3994 4.202357 TGTTTAGTTGTCTGCATGTCCTCT 60.202 41.667 0.00 0.00 0.00 3.69
3027 3995 4.065088 TGTTTAGTTGTCTGCATGTCCTC 58.935 43.478 0.00 0.00 0.00 3.71
3028 3996 4.085357 TGTTTAGTTGTCTGCATGTCCT 57.915 40.909 0.00 0.00 0.00 3.85
3029 3997 6.683974 ATATGTTTAGTTGTCTGCATGTCC 57.316 37.500 0.00 0.00 0.00 4.02
3030 3998 8.023128 ACAAATATGTTTAGTTGTCTGCATGTC 58.977 33.333 0.00 0.00 41.42 3.06
3031 3999 7.885297 ACAAATATGTTTAGTTGTCTGCATGT 58.115 30.769 0.00 0.00 41.42 3.21
3078 4046 2.366916 AGCTAGCTACATAACCAGCAGG 59.633 50.000 17.69 0.00 40.36 4.85
3086 4054 6.678878 CCGATTGTTCTAGCTAGCTACATAA 58.321 40.000 20.67 14.04 0.00 1.90
3087 4055 5.335740 GCCGATTGTTCTAGCTAGCTACATA 60.336 44.000 20.67 10.84 0.00 2.29
3088 4056 4.559704 GCCGATTGTTCTAGCTAGCTACAT 60.560 45.833 20.67 9.85 0.00 2.29
3090 4058 3.004944 AGCCGATTGTTCTAGCTAGCTAC 59.995 47.826 20.67 14.33 30.07 3.58
3132 4104 3.879892 CCCTAGCTACTCCATGCTTTTTC 59.120 47.826 0.00 0.00 40.35 2.29
3133 4105 3.267031 ACCCTAGCTACTCCATGCTTTTT 59.733 43.478 0.00 0.00 40.35 1.94
3135 4107 2.436173 GACCCTAGCTACTCCATGCTTT 59.564 50.000 0.00 0.00 40.35 3.51
3137 4109 1.062886 TGACCCTAGCTACTCCATGCT 60.063 52.381 0.00 0.00 42.67 3.79
3138 4110 1.342819 CTGACCCTAGCTACTCCATGC 59.657 57.143 0.00 0.00 0.00 4.06
3188 4160 5.527214 GTGGTTGCTTATTTTCTGGCTTTTT 59.473 36.000 0.00 0.00 0.00 1.94
3189 4161 5.056480 GTGGTTGCTTATTTTCTGGCTTTT 58.944 37.500 0.00 0.00 0.00 2.27
3190 4162 4.503123 GGTGGTTGCTTATTTTCTGGCTTT 60.503 41.667 0.00 0.00 0.00 3.51
3191 4163 3.006859 GGTGGTTGCTTATTTTCTGGCTT 59.993 43.478 0.00 0.00 0.00 4.35
3192 4164 2.562738 GGTGGTTGCTTATTTTCTGGCT 59.437 45.455 0.00 0.00 0.00 4.75
3220 4192 1.794701 CATGCAAGATCATCGGGTACG 59.205 52.381 0.00 0.00 42.74 3.67
3255 4227 0.679960 AACACTAAATCGCCCCTGGC 60.680 55.000 0.00 0.00 46.75 4.85
3256 4228 1.834188 AAACACTAAATCGCCCCTGG 58.166 50.000 0.00 0.00 0.00 4.45
3257 4229 6.877611 AATATAAACACTAAATCGCCCCTG 57.122 37.500 0.00 0.00 0.00 4.45
3258 4230 7.057894 TCAAATATAAACACTAAATCGCCCCT 58.942 34.615 0.00 0.00 0.00 4.79
3259 4231 7.266922 TCAAATATAAACACTAAATCGCCCC 57.733 36.000 0.00 0.00 0.00 5.80
3260 4232 7.326063 GCATCAAATATAAACACTAAATCGCCC 59.674 37.037 0.00 0.00 0.00 6.13
3261 4233 7.059488 CGCATCAAATATAAACACTAAATCGCC 59.941 37.037 0.00 0.00 0.00 5.54
3262 4234 7.796660 TCGCATCAAATATAAACACTAAATCGC 59.203 33.333 0.00 0.00 0.00 4.58
3263 4235 9.644993 TTCGCATCAAATATAAACACTAAATCG 57.355 29.630 0.00 0.00 0.00 3.34
3269 4241 9.638239 AAATGTTTCGCATCAAATATAAACACT 57.362 25.926 0.00 0.00 39.01 3.55
3281 4253 9.935682 GAAGAAGAATATAAATGTTTCGCATCA 57.064 29.630 0.00 0.00 36.67 3.07
3290 4262 8.661345 GGGGGTCTAGAAGAAGAATATAAATGT 58.339 37.037 0.00 0.00 0.00 2.71
3291 4263 8.660435 TGGGGGTCTAGAAGAAGAATATAAATG 58.340 37.037 0.00 0.00 0.00 2.32
3292 4264 8.814448 TGGGGGTCTAGAAGAAGAATATAAAT 57.186 34.615 0.00 0.00 0.00 1.40
3293 4265 7.849904 ACTGGGGGTCTAGAAGAAGAATATAAA 59.150 37.037 0.00 0.00 0.00 1.40
3294 4266 7.371043 ACTGGGGGTCTAGAAGAAGAATATAA 58.629 38.462 0.00 0.00 0.00 0.98
3295 4267 6.935036 ACTGGGGGTCTAGAAGAAGAATATA 58.065 40.000 0.00 0.00 0.00 0.86
3296 4268 5.793967 ACTGGGGGTCTAGAAGAAGAATAT 58.206 41.667 0.00 0.00 0.00 1.28
3297 4269 5.209659 GACTGGGGGTCTAGAAGAAGAATA 58.790 45.833 0.00 0.00 41.46 1.75
3298 4270 4.034410 GACTGGGGGTCTAGAAGAAGAAT 58.966 47.826 0.00 0.00 41.46 2.40
3299 4271 3.442076 GACTGGGGGTCTAGAAGAAGAA 58.558 50.000 0.00 0.00 41.46 2.52
3300 4272 2.620886 CGACTGGGGGTCTAGAAGAAGA 60.621 54.545 0.00 0.00 42.44 2.87
3301 4273 1.751924 CGACTGGGGGTCTAGAAGAAG 59.248 57.143 0.00 0.00 42.44 2.85
3302 4274 1.076677 ACGACTGGGGGTCTAGAAGAA 59.923 52.381 0.00 0.00 42.44 2.52
3303 4275 0.702902 ACGACTGGGGGTCTAGAAGA 59.297 55.000 0.00 0.00 42.44 2.87
3304 4276 2.431954 TACGACTGGGGGTCTAGAAG 57.568 55.000 0.00 0.00 42.44 2.85
3305 4277 4.736611 ATATACGACTGGGGGTCTAGAA 57.263 45.455 0.00 0.00 42.44 2.10
3306 4278 5.730207 AGATATATACGACTGGGGGTCTAGA 59.270 44.000 0.00 0.00 42.44 2.43
3307 4279 6.003859 AGATATATACGACTGGGGGTCTAG 57.996 45.833 0.00 0.00 42.44 2.43
3308 4280 6.905215 TCTAGATATATACGACTGGGGGTCTA 59.095 42.308 0.00 0.00 42.44 2.59
3309 4281 4.949966 AGATATATACGACTGGGGGTCT 57.050 45.455 0.00 0.00 42.44 3.85
3310 4282 5.821995 GTCTAGATATATACGACTGGGGGTC 59.178 48.000 0.00 0.00 41.28 4.46
3311 4283 5.491800 AGTCTAGATATATACGACTGGGGGT 59.508 44.000 0.00 0.00 33.99 4.95
3312 4284 6.003859 AGTCTAGATATATACGACTGGGGG 57.996 45.833 0.00 0.00 33.99 5.40
3313 4285 8.020777 TCTAGTCTAGATATATACGACTGGGG 57.979 42.308 5.41 9.38 36.46 4.96
3314 4286 8.698210 ACTCTAGTCTAGATATATACGACTGGG 58.302 40.741 10.06 11.34 36.46 4.45
3319 4291 9.368674 GCACAACTCTAGTCTAGATATATACGA 57.631 37.037 10.06 0.00 33.66 3.43
3320 4292 9.152595 TGCACAACTCTAGTCTAGATATATACG 57.847 37.037 10.06 0.00 33.66 3.06
3323 4295 9.581289 ACTTGCACAACTCTAGTCTAGATATAT 57.419 33.333 10.06 0.00 33.66 0.86
3324 4296 8.982091 ACTTGCACAACTCTAGTCTAGATATA 57.018 34.615 10.06 0.00 33.66 0.86
3325 4297 7.889873 ACTTGCACAACTCTAGTCTAGATAT 57.110 36.000 10.06 0.00 33.66 1.63
3326 4298 8.265764 TCTACTTGCACAACTCTAGTCTAGATA 58.734 37.037 10.06 0.00 33.66 1.98
3327 4299 7.113437 TCTACTTGCACAACTCTAGTCTAGAT 58.887 38.462 10.06 0.00 33.66 1.98
3328 4300 6.473758 TCTACTTGCACAACTCTAGTCTAGA 58.526 40.000 9.28 9.28 0.00 2.43
3329 4301 6.745159 TCTACTTGCACAACTCTAGTCTAG 57.255 41.667 0.00 0.00 0.00 2.43
3330 4302 8.047911 AGTATCTACTTGCACAACTCTAGTCTA 58.952 37.037 0.00 0.00 31.13 2.59
3331 4303 6.887545 AGTATCTACTTGCACAACTCTAGTCT 59.112 38.462 0.00 0.00 31.13 3.24
3332 4304 7.090953 AGTATCTACTTGCACAACTCTAGTC 57.909 40.000 0.00 0.00 31.13 2.59
3333 4305 6.095720 GGAGTATCTACTTGCACAACTCTAGT 59.904 42.308 0.00 0.00 36.50 2.57
3334 4306 6.460399 GGGAGTATCTACTTGCACAACTCTAG 60.460 46.154 0.00 0.00 36.50 2.43
3335 4307 5.360144 GGGAGTATCTACTTGCACAACTCTA 59.640 44.000 0.00 0.00 36.50 2.43
3336 4308 4.160626 GGGAGTATCTACTTGCACAACTCT 59.839 45.833 0.00 0.00 36.50 3.24
3337 4309 4.160626 AGGGAGTATCTACTTGCACAACTC 59.839 45.833 0.00 0.00 36.50 3.01
3338 4310 4.097418 AGGGAGTATCTACTTGCACAACT 58.903 43.478 0.00 0.00 36.50 3.16
3339 4311 4.434520 GAGGGAGTATCTACTTGCACAAC 58.565 47.826 0.00 0.00 36.50 3.32
3340 4312 3.130516 CGAGGGAGTATCTACTTGCACAA 59.869 47.826 0.00 0.00 36.50 3.33
3341 4313 2.688446 CGAGGGAGTATCTACTTGCACA 59.312 50.000 0.00 0.00 36.50 4.57
3342 4314 2.688958 ACGAGGGAGTATCTACTTGCAC 59.311 50.000 0.00 0.00 36.50 4.57
3343 4315 2.688446 CACGAGGGAGTATCTACTTGCA 59.312 50.000 0.00 0.00 36.50 4.08
3344 4316 2.688958 ACACGAGGGAGTATCTACTTGC 59.311 50.000 0.00 0.00 36.50 4.01
3345 4317 6.446781 TTTACACGAGGGAGTATCTACTTG 57.553 41.667 0.00 0.00 36.50 3.16
3346 4318 7.472334 TTTTTACACGAGGGAGTATCTACTT 57.528 36.000 0.00 0.00 36.50 2.24
3367 4339 7.924412 TCCGTCTCATAATATAAGAGCGTTTTT 59.076 33.333 0.00 0.00 31.69 1.94
3368 4340 7.431249 TCCGTCTCATAATATAAGAGCGTTTT 58.569 34.615 0.00 0.00 31.69 2.43
3369 4341 6.978338 TCCGTCTCATAATATAAGAGCGTTT 58.022 36.000 0.00 0.00 31.69 3.60
3370 4342 6.349445 CCTCCGTCTCATAATATAAGAGCGTT 60.349 42.308 0.00 0.00 31.69 4.84
3371 4343 5.124138 CCTCCGTCTCATAATATAAGAGCGT 59.876 44.000 0.00 0.00 31.69 5.07
3372 4344 5.449314 CCCTCCGTCTCATAATATAAGAGCG 60.449 48.000 0.00 0.00 0.00 5.03
3373 4345 5.652891 TCCCTCCGTCTCATAATATAAGAGC 59.347 44.000 0.00 0.00 0.00 4.09
3374 4346 6.887545 ACTCCCTCCGTCTCATAATATAAGAG 59.112 42.308 0.00 0.00 0.00 2.85
3375 4347 6.659668 CACTCCCTCCGTCTCATAATATAAGA 59.340 42.308 0.00 0.00 0.00 2.10
3376 4348 6.127591 CCACTCCCTCCGTCTCATAATATAAG 60.128 46.154 0.00 0.00 0.00 1.73
3377 4349 5.715279 CCACTCCCTCCGTCTCATAATATAA 59.285 44.000 0.00 0.00 0.00 0.98
3378 4350 5.222275 ACCACTCCCTCCGTCTCATAATATA 60.222 44.000 0.00 0.00 0.00 0.86
3379 4351 4.090090 CCACTCCCTCCGTCTCATAATAT 58.910 47.826 0.00 0.00 0.00 1.28
3380 4352 3.117246 ACCACTCCCTCCGTCTCATAATA 60.117 47.826 0.00 0.00 0.00 0.98
3381 4353 2.320781 CCACTCCCTCCGTCTCATAAT 58.679 52.381 0.00 0.00 0.00 1.28
3382 4354 1.006758 ACCACTCCCTCCGTCTCATAA 59.993 52.381 0.00 0.00 0.00 1.90
3383 4355 0.629596 ACCACTCCCTCCGTCTCATA 59.370 55.000 0.00 0.00 0.00 2.15
3384 4356 0.629596 TACCACTCCCTCCGTCTCAT 59.370 55.000 0.00 0.00 0.00 2.90
3385 4357 0.406750 TTACCACTCCCTCCGTCTCA 59.593 55.000 0.00 0.00 0.00 3.27
3386 4358 1.777941 ATTACCACTCCCTCCGTCTC 58.222 55.000 0.00 0.00 0.00 3.36
3387 4359 1.831736 CAATTACCACTCCCTCCGTCT 59.168 52.381 0.00 0.00 0.00 4.18
3388 4360 1.829222 TCAATTACCACTCCCTCCGTC 59.171 52.381 0.00 0.00 0.00 4.79
3389 4361 1.946984 TCAATTACCACTCCCTCCGT 58.053 50.000 0.00 0.00 0.00 4.69
3390 4362 2.434336 TCATCAATTACCACTCCCTCCG 59.566 50.000 0.00 0.00 0.00 4.63
3391 4363 3.456277 ACTCATCAATTACCACTCCCTCC 59.544 47.826 0.00 0.00 0.00 4.30
3392 4364 4.762289 ACTCATCAATTACCACTCCCTC 57.238 45.455 0.00 0.00 0.00 4.30
3393 4365 4.536090 TCAACTCATCAATTACCACTCCCT 59.464 41.667 0.00 0.00 0.00 4.20
3394 4366 4.843728 TCAACTCATCAATTACCACTCCC 58.156 43.478 0.00 0.00 0.00 4.30
3395 4367 5.220931 GCATCAACTCATCAATTACCACTCC 60.221 44.000 0.00 0.00 0.00 3.85
3396 4368 5.220931 GGCATCAACTCATCAATTACCACTC 60.221 44.000 0.00 0.00 0.00 3.51
3397 4369 4.641989 GGCATCAACTCATCAATTACCACT 59.358 41.667 0.00 0.00 0.00 4.00
3398 4370 4.398988 TGGCATCAACTCATCAATTACCAC 59.601 41.667 0.00 0.00 0.00 4.16
3399 4371 4.598022 TGGCATCAACTCATCAATTACCA 58.402 39.130 0.00 0.00 0.00 3.25
3400 4372 5.581126 TTGGCATCAACTCATCAATTACC 57.419 39.130 0.00 0.00 0.00 2.85
3418 4390 4.345547 AGTCCTAAGCCTCTATTAGTTGGC 59.654 45.833 16.87 16.87 45.21 4.52
3419 4391 6.284459 CAAGTCCTAAGCCTCTATTAGTTGG 58.716 44.000 0.00 0.00 0.00 3.77
3420 4392 6.284459 CCAAGTCCTAAGCCTCTATTAGTTG 58.716 44.000 0.00 0.00 0.00 3.16
3421 4393 5.367060 CCCAAGTCCTAAGCCTCTATTAGTT 59.633 44.000 0.00 0.00 0.00 2.24
3422 4394 4.902448 CCCAAGTCCTAAGCCTCTATTAGT 59.098 45.833 0.00 0.00 0.00 2.24
3423 4395 5.011227 GTCCCAAGTCCTAAGCCTCTATTAG 59.989 48.000 0.00 0.00 0.00 1.73
3424 4396 4.900054 GTCCCAAGTCCTAAGCCTCTATTA 59.100 45.833 0.00 0.00 0.00 0.98
3425 4397 3.712218 GTCCCAAGTCCTAAGCCTCTATT 59.288 47.826 0.00 0.00 0.00 1.73
3426 4398 3.310193 GTCCCAAGTCCTAAGCCTCTAT 58.690 50.000 0.00 0.00 0.00 1.98
3427 4399 2.626149 GGTCCCAAGTCCTAAGCCTCTA 60.626 54.545 0.00 0.00 0.00 2.43
3428 4400 1.574263 GTCCCAAGTCCTAAGCCTCT 58.426 55.000 0.00 0.00 0.00 3.69
3429 4401 0.542333 GGTCCCAAGTCCTAAGCCTC 59.458 60.000 0.00 0.00 0.00 4.70
3430 4402 0.178873 TGGTCCCAAGTCCTAAGCCT 60.179 55.000 0.00 0.00 0.00 4.58
3431 4403 0.035343 GTGGTCCCAAGTCCTAAGCC 60.035 60.000 0.00 0.00 0.00 4.35
3432 4404 0.391263 CGTGGTCCCAAGTCCTAAGC 60.391 60.000 0.00 0.00 0.00 3.09
3433 4405 1.263356 TCGTGGTCCCAAGTCCTAAG 58.737 55.000 0.00 0.00 0.00 2.18
3434 4406 1.719529 TTCGTGGTCCCAAGTCCTAA 58.280 50.000 0.00 0.00 0.00 2.69
3435 4407 1.946984 ATTCGTGGTCCCAAGTCCTA 58.053 50.000 0.00 0.00 0.00 2.94
3436 4408 1.003233 GAATTCGTGGTCCCAAGTCCT 59.997 52.381 0.00 0.00 0.00 3.85
3437 4409 1.450025 GAATTCGTGGTCCCAAGTCC 58.550 55.000 0.00 0.00 0.00 3.85
3438 4410 1.076332 CGAATTCGTGGTCCCAAGTC 58.924 55.000 19.67 0.00 34.11 3.01
3439 4411 3.226884 CGAATTCGTGGTCCCAAGT 57.773 52.632 19.67 0.00 34.11 3.16
3450 4422 4.149396 AGTTTGAAAGACCGTACGAATTCG 59.851 41.667 25.64 25.64 46.33 3.34
3451 4423 5.176223 TGAGTTTGAAAGACCGTACGAATTC 59.824 40.000 18.76 14.60 0.00 2.17
3452 4424 5.051816 TGAGTTTGAAAGACCGTACGAATT 58.948 37.500 18.76 5.27 0.00 2.17
3453 4425 4.624015 TGAGTTTGAAAGACCGTACGAAT 58.376 39.130 18.76 3.94 0.00 3.34
3454 4426 4.044336 TGAGTTTGAAAGACCGTACGAA 57.956 40.909 18.76 0.00 0.00 3.85
3455 4427 3.713858 TGAGTTTGAAAGACCGTACGA 57.286 42.857 18.76 0.00 0.00 3.43
3456 4428 3.985279 TGATGAGTTTGAAAGACCGTACG 59.015 43.478 8.69 8.69 0.00 3.67
3457 4429 5.917541 TTGATGAGTTTGAAAGACCGTAC 57.082 39.130 0.00 0.00 0.00 3.67
3458 4430 6.764085 TCTTTTGATGAGTTTGAAAGACCGTA 59.236 34.615 0.00 0.00 32.97 4.02
3459 4431 5.588648 TCTTTTGATGAGTTTGAAAGACCGT 59.411 36.000 0.00 0.00 32.97 4.83
3460 4432 6.060028 TCTTTTGATGAGTTTGAAAGACCG 57.940 37.500 0.00 0.00 32.97 4.79
3475 4447 4.682787 TGATCGTAGACGCATCTTTTGAT 58.317 39.130 0.00 0.00 42.51 2.57
3476 4448 4.104696 TGATCGTAGACGCATCTTTTGA 57.895 40.909 0.00 0.00 42.51 2.69
3477 4449 4.999484 GATGATCGTAGACGCATCTTTTG 58.001 43.478 12.55 0.00 43.70 2.44
3482 4454 3.822594 AGAGATGATCGTAGACGCATC 57.177 47.619 12.13 12.13 45.84 3.91
3483 4455 4.541779 GAAAGAGATGATCGTAGACGCAT 58.458 43.478 0.00 0.00 42.51 4.73
3484 4456 3.546218 CGAAAGAGATGATCGTAGACGCA 60.546 47.826 0.00 0.00 42.51 5.24
3485 4457 2.968006 CGAAAGAGATGATCGTAGACGC 59.032 50.000 0.00 0.00 42.51 5.19
3486 4458 2.968006 GCGAAAGAGATGATCGTAGACG 59.032 50.000 0.00 0.00 42.51 4.18
3487 4459 4.217754 AGCGAAAGAGATGATCGTAGAC 57.782 45.455 0.00 0.00 42.51 2.59
3488 4460 4.602006 CAAGCGAAAGAGATGATCGTAGA 58.398 43.478 0.00 0.00 45.75 2.59
3489 4461 3.181377 GCAAGCGAAAGAGATGATCGTAG 59.819 47.826 0.00 0.00 38.75 3.51
3490 4462 3.116300 GCAAGCGAAAGAGATGATCGTA 58.884 45.455 0.00 0.00 38.75 3.43
3491 4463 1.929836 GCAAGCGAAAGAGATGATCGT 59.070 47.619 0.00 0.00 38.75 3.73
3492 4464 1.071633 CGCAAGCGAAAGAGATGATCG 60.072 52.381 9.11 0.00 42.83 3.69
3493 4465 1.929836 ACGCAAGCGAAAGAGATGATC 59.070 47.619 22.30 0.00 42.83 2.92
3494 4466 1.662629 CACGCAAGCGAAAGAGATGAT 59.337 47.619 22.30 0.00 42.83 2.45
3495 4467 1.070821 CACGCAAGCGAAAGAGATGA 58.929 50.000 22.30 0.00 42.83 2.92
3496 4468 0.792640 ACACGCAAGCGAAAGAGATG 59.207 50.000 22.30 9.30 42.83 2.90
3497 4469 1.071605 GACACGCAAGCGAAAGAGAT 58.928 50.000 22.30 0.00 42.83 2.75
3498 4470 0.944311 GGACACGCAAGCGAAAGAGA 60.944 55.000 22.30 0.00 42.83 3.10
3499 4471 0.946221 AGGACACGCAAGCGAAAGAG 60.946 55.000 22.30 7.61 42.83 2.85
3500 4472 1.069090 AGGACACGCAAGCGAAAGA 59.931 52.632 22.30 0.00 42.83 2.52
3501 4473 1.205064 CAGGACACGCAAGCGAAAG 59.795 57.895 22.30 12.36 42.83 2.62
3502 4474 0.602638 ATCAGGACACGCAAGCGAAA 60.603 50.000 22.30 0.00 42.83 3.46
3503 4475 0.245266 TATCAGGACACGCAAGCGAA 59.755 50.000 22.30 0.00 42.83 4.70
3504 4476 0.457853 GTATCAGGACACGCAAGCGA 60.458 55.000 22.30 0.00 42.83 4.93
3505 4477 1.421410 GGTATCAGGACACGCAAGCG 61.421 60.000 13.50 13.50 46.03 4.68
3506 4478 1.090052 GGGTATCAGGACACGCAAGC 61.090 60.000 0.00 0.00 45.62 4.01
3508 4480 2.367529 TGGGTATCAGGACACGCAA 58.632 52.632 0.00 0.00 35.02 4.85
3509 4481 4.121906 TGGGTATCAGGACACGCA 57.878 55.556 0.00 0.00 35.51 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.