Multiple sequence alignment - TraesCS6D01G038200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G038200 chr6D 100.000 3527 0 0 1 3527 15800265 15796739 0.000000e+00 6514.0
1 TraesCS6D01G038200 chr6D 90.471 2802 219 23 4 2779 15809844 15807065 0.000000e+00 3651.0
2 TraesCS6D01G038200 chr6D 83.262 2109 278 46 452 2531 15748504 15746442 0.000000e+00 1869.0
3 TraesCS6D01G038200 chr6D 85.216 1779 246 12 778 2548 15419831 15418062 0.000000e+00 1812.0
4 TraesCS6D01G038200 chr6D 90.387 749 50 6 309 1055 15784687 15783959 0.000000e+00 965.0
5 TraesCS6D01G038200 chr6D 89.583 96 8 2 159 254 15784783 15784690 1.720000e-23 121.0
6 TraesCS6D01G038200 chr6B 91.936 3212 240 13 328 3525 27820914 27817708 0.000000e+00 4479.0
7 TraesCS6D01G038200 chr6B 94.111 2615 144 10 272 2883 27806996 27804389 0.000000e+00 3967.0
8 TraesCS6D01G038200 chr6B 88.100 1605 179 9 952 2547 27779832 27778231 0.000000e+00 1895.0
9 TraesCS6D01G038200 chr6B 86.385 213 22 3 2909 3115 27804392 27804181 3.540000e-55 226.0
10 TraesCS6D01G038200 chr6B 87.324 71 5 2 461 531 27781069 27781003 1.050000e-10 78.7
11 TraesCS6D01G038200 chr6A 92.883 2993 194 12 312 3295 16401381 16398399 0.000000e+00 4329.0
12 TraesCS6D01G038200 chr6A 89.907 2477 221 15 309 2781 16410708 16408257 0.000000e+00 3162.0
13 TraesCS6D01G038200 chr6A 86.058 1786 203 34 777 2531 16388427 16386657 0.000000e+00 1877.0
14 TraesCS6D01G038200 chr6A 85.418 1735 241 8 797 2526 15953615 15951888 0.000000e+00 1792.0
15 TraesCS6D01G038200 chr6A 90.000 280 17 2 4 272 16401676 16401397 5.600000e-93 351.0
16 TraesCS6D01G038200 chr6A 89.873 79 8 0 3413 3491 16398360 16398282 6.230000e-18 102.0
17 TraesCS6D01G038200 chr2D 100.000 30 0 0 3087 3116 45087938 45087909 4.920000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G038200 chr6D 15796739 15800265 3526 True 6514.00 6514 100.000000 1 3527 1 chr6D.!!$R3 3526
1 TraesCS6D01G038200 chr6D 15807065 15809844 2779 True 3651.00 3651 90.471000 4 2779 1 chr6D.!!$R4 2775
2 TraesCS6D01G038200 chr6D 15746442 15748504 2062 True 1869.00 1869 83.262000 452 2531 1 chr6D.!!$R2 2079
3 TraesCS6D01G038200 chr6D 15418062 15419831 1769 True 1812.00 1812 85.216000 778 2548 1 chr6D.!!$R1 1770
4 TraesCS6D01G038200 chr6D 15783959 15784783 824 True 543.00 965 89.985000 159 1055 2 chr6D.!!$R5 896
5 TraesCS6D01G038200 chr6B 27817708 27820914 3206 True 4479.00 4479 91.936000 328 3525 1 chr6B.!!$R1 3197
6 TraesCS6D01G038200 chr6B 27804181 27806996 2815 True 2096.50 3967 90.248000 272 3115 2 chr6B.!!$R3 2843
7 TraesCS6D01G038200 chr6B 27778231 27781069 2838 True 986.85 1895 87.712000 461 2547 2 chr6B.!!$R2 2086
8 TraesCS6D01G038200 chr6A 16408257 16410708 2451 True 3162.00 3162 89.907000 309 2781 1 chr6A.!!$R3 2472
9 TraesCS6D01G038200 chr6A 16386657 16388427 1770 True 1877.00 1877 86.058000 777 2531 1 chr6A.!!$R2 1754
10 TraesCS6D01G038200 chr6A 15951888 15953615 1727 True 1792.00 1792 85.418000 797 2526 1 chr6A.!!$R1 1729
11 TraesCS6D01G038200 chr6A 16398282 16401676 3394 True 1594.00 4329 90.918667 4 3491 3 chr6A.!!$R4 3487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 308 0.107703 AGACACACACACACACCCAG 60.108 55.0 0.00 0.0 0.00 4.45 F
274 310 0.107703 ACACACACACACACCCAGAG 60.108 55.0 0.00 0.0 0.00 3.35 F
554 771 0.716108 CTGTACGTACTTGCAGCAGC 59.284 55.0 25.12 0.0 42.57 5.25 F
1650 2566 1.071434 TGATGTTGGTGGTGATGGGA 58.929 50.0 0.00 0.0 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2109 3025 0.321210 CACCATAGACGGCACCACAA 60.321 55.000 0.00 0.0 0.00 3.33 R
2223 3139 1.980844 GAGTATTGCGACGACGTGAAA 59.019 47.619 4.58 0.0 41.98 2.69 R
2391 3307 0.459489 CCTTGCTCTTCTCCTCCTCG 59.541 60.000 0.00 0.0 0.00 4.63 R
3149 4076 0.032130 TCTGAGGAAGTCACACGCAC 59.968 55.000 0.00 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 108 7.504922 TGTGAAAAGTCGAACTTGAAATTTG 57.495 32.000 0.00 0.00 38.66 2.32
97 118 8.469125 GTCGAACTTGAAATTTGACATGTTTAC 58.531 33.333 0.00 3.31 39.40 2.01
127 149 8.408601 AGATGAACTTAACCACATATGCATTTC 58.591 33.333 3.54 0.00 0.00 2.17
179 201 6.152932 AGTTTTCATGCAGATTTTCACTGT 57.847 33.333 0.00 0.00 37.64 3.55
200 222 8.352201 CACTGTCTTTCTTCATAATGTTTCCAA 58.648 33.333 0.00 0.00 0.00 3.53
269 305 1.006832 GACAGACACACACACACACC 58.993 55.000 0.00 0.00 0.00 4.16
272 308 0.107703 AGACACACACACACACCCAG 60.108 55.000 0.00 0.00 0.00 4.45
273 309 0.107897 GACACACACACACACCCAGA 60.108 55.000 0.00 0.00 0.00 3.86
274 310 0.107703 ACACACACACACACCCAGAG 60.108 55.000 0.00 0.00 0.00 3.35
275 311 0.815213 CACACACACACACCCAGAGG 60.815 60.000 0.00 0.00 40.04 3.69
550 767 0.739813 GGCCCTGTACGTACTTGCAG 60.740 60.000 25.12 14.38 0.00 4.41
554 771 0.716108 CTGTACGTACTTGCAGCAGC 59.284 55.000 25.12 0.00 42.57 5.25
633 1512 8.763049 TGATAAGTTCAACAAGACAGATGTAG 57.237 34.615 0.00 0.00 0.00 2.74
682 1561 8.257306 AGTTGGACAAACACACAAATTAAGAAT 58.743 29.630 0.00 0.00 41.61 2.40
715 1594 9.661563 AGAACGTCAAACATATAACTAATGGAA 57.338 29.630 0.00 0.00 0.00 3.53
766 1650 8.686334 GCTCAAGGAAAAATGAATGGAATACTA 58.314 33.333 0.00 0.00 0.00 1.82
851 1740 7.012704 AGTGGTTCAAGCATGCTATAAATACAG 59.987 37.037 23.00 2.95 0.00 2.74
886 1775 2.166741 TTTCGAGCACAAACACAACG 57.833 45.000 0.00 0.00 0.00 4.10
931 1838 3.576118 AGCTAAGCACTTGTCTCTCAGAA 59.424 43.478 0.00 0.00 0.00 3.02
1420 2336 4.006989 CACAATCCGTTTCCTCATTGGTA 58.993 43.478 0.00 0.00 37.07 3.25
1650 2566 1.071434 TGATGTTGGTGGTGATGGGA 58.929 50.000 0.00 0.00 0.00 4.37
2109 3025 1.217511 CATCTGTGTCGAGGCTGCT 59.782 57.895 0.00 0.00 0.00 4.24
2154 3070 2.746671 TTCGTCTCTCGGCGCTCT 60.747 61.111 7.64 0.00 40.32 4.09
2166 3082 2.811101 CGCTCTCTCGGCCTCATT 59.189 61.111 0.00 0.00 0.00 2.57
2223 3139 1.202818 GGGCTCACACAGTTCCTCTTT 60.203 52.381 0.00 0.00 0.00 2.52
2508 3424 4.440145 GGTACCCCACCTCACGTA 57.560 61.111 0.00 0.00 44.79 3.57
2698 3616 3.966543 CAACCCCTTGGAGGCGGT 61.967 66.667 2.47 2.47 39.59 5.68
2705 3623 0.323629 CCTTGGAGGCGGTTTGTAGA 59.676 55.000 0.00 0.00 0.00 2.59
2710 3628 2.224670 TGGAGGCGGTTTGTAGAATGTT 60.225 45.455 0.00 0.00 0.00 2.71
2790 3711 3.313526 CACATTCCTCGTGGATCCATTTC 59.686 47.826 19.62 4.01 42.81 2.17
2809 3730 6.362283 CCATTTCCATCGTTGTTTTGTACTTC 59.638 38.462 0.00 0.00 0.00 3.01
2860 3781 0.400213 ATGGAAACCGACTGCCTTCA 59.600 50.000 0.00 0.00 0.00 3.02
2874 3795 0.169230 CCTTCAGTCAGTCGACCTCG 59.831 60.000 13.01 0.94 43.73 4.63
2876 3797 1.241990 TTCAGTCAGTCGACCTCGGG 61.242 60.000 13.01 0.00 43.73 5.14
2885 3806 1.134788 GTCGACCTCGGGAAACATCAT 60.135 52.381 3.51 0.00 40.29 2.45
2907 3828 4.687215 TGTGGTGGCGCTGCTCTC 62.687 66.667 7.64 0.00 0.00 3.20
2986 3907 2.325082 CGGCCAACCTTCCAACTCG 61.325 63.158 2.24 0.00 0.00 4.18
2987 3908 1.228154 GGCCAACCTTCCAACTCGT 60.228 57.895 0.00 0.00 0.00 4.18
3018 3944 5.689819 CAAAGTCTGCTTGCGTATTTTACT 58.310 37.500 0.00 0.00 34.71 2.24
3039 3965 0.820871 AGAACTGGCTCGATGAGACC 59.179 55.000 0.00 0.00 36.76 3.85
3076 4003 3.068881 CCTCTTGGCTGTCCGGAA 58.931 61.111 5.23 0.00 34.14 4.30
3077 4004 1.374947 CCTCTTGGCTGTCCGGAAA 59.625 57.895 5.23 0.00 34.14 3.13
3115 4042 4.695455 TGAATAAAGCTCTCAAGTTTCCCG 59.305 41.667 0.00 0.00 0.00 5.14
3117 4044 0.951040 AAGCTCTCAAGTTTCCCGCG 60.951 55.000 0.00 0.00 0.00 6.46
3118 4045 2.391389 GCTCTCAAGTTTCCCGCGG 61.391 63.158 21.04 21.04 0.00 6.46
3166 4093 1.069090 GGTGCGTGTGACTTCCTCA 59.931 57.895 0.00 0.00 0.00 3.86
3186 4113 2.428890 CAGAAGGTACTAGTGCTCCCTG 59.571 54.545 10.95 10.67 38.49 4.45
3205 4132 3.691118 CCTGCATGTTGTAGCATAACTGT 59.309 43.478 0.00 0.00 40.42 3.55
3213 4140 7.652300 TGTTGTAGCATAACTGTTCAAGTAG 57.348 36.000 0.00 0.00 38.56 2.57
3229 4156 0.517316 GTAGAACTTGCCCTTGTGCG 59.483 55.000 0.00 0.00 0.00 5.34
3233 4160 0.889186 AACTTGCCCTTGTGCGGTAG 60.889 55.000 0.00 0.00 0.00 3.18
3284 4212 7.118390 GGATGAATAGGACATGCATACAACTAC 59.882 40.741 0.00 0.00 36.40 2.73
3397 4328 8.554490 AATATACATGAAGTAGGGTCAGACTT 57.446 34.615 0.00 0.00 38.60 3.01
3406 4337 7.123847 TGAAGTAGGGTCAGACTTTAGGTTATC 59.876 40.741 0.00 0.00 36.04 1.75
3407 4338 6.500336 AGTAGGGTCAGACTTTAGGTTATCA 58.500 40.000 0.00 0.00 0.00 2.15
3418 4349 7.875041 AGACTTTAGGTTATCAATGATGATCGG 59.125 37.037 5.91 0.00 42.75 4.18
3456 4387 2.726821 CAACCACCCTACTCCGTACTA 58.273 52.381 0.00 0.00 0.00 1.82
3465 4396 4.125703 CCTACTCCGTACTAACTCGATGT 58.874 47.826 0.00 0.00 0.00 3.06
3479 4410 4.507710 ACTCGATGTTCTTGCATGTGTAT 58.492 39.130 0.00 0.00 0.00 2.29
3485 4416 0.330941 TCTTGCATGTGTATGGGCCA 59.669 50.000 9.61 9.61 34.79 5.36
3492 4423 3.159472 CATGTGTATGGGCCATAATGCT 58.841 45.455 27.20 10.48 0.00 3.79
3493 4424 2.585330 TGTGTATGGGCCATAATGCTG 58.415 47.619 27.20 0.00 0.00 4.41
3494 4425 2.174424 TGTGTATGGGCCATAATGCTGA 59.826 45.455 27.20 2.99 0.00 4.26
3498 4429 2.057137 TGGGCCATAATGCTGAAGAC 57.943 50.000 0.00 0.00 0.00 3.01
3501 4432 2.360165 GGGCCATAATGCTGAAGACTTG 59.640 50.000 4.39 0.00 0.00 3.16
3502 4433 3.019564 GGCCATAATGCTGAAGACTTGT 58.980 45.455 0.00 0.00 0.00 3.16
3503 4434 3.445096 GGCCATAATGCTGAAGACTTGTT 59.555 43.478 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.846943 AATGAATAGTGACAAACATGAGTACA 57.153 30.769 0.00 0.00 0.00 2.90
41 43 9.197694 TCACAAAAATAAATAATTTGGTCGGTG 57.802 29.630 0.00 0.00 37.85 4.94
55 57 9.627395 TCAAGTTCGACTTTTCACAAAAATAAA 57.373 25.926 0.00 0.00 36.03 1.40
97 118 8.839343 TGCATATGTGGTTAAGTTCATCTTATG 58.161 33.333 4.29 0.00 38.27 1.90
114 135 4.400251 AGGTTCCACAGAAATGCATATGTG 59.600 41.667 23.06 23.06 42.09 3.21
127 149 3.425162 AAGCTTTAGGAGGTTCCACAG 57.575 47.619 0.00 0.00 42.17 3.66
179 201 8.648698 TCCATTGGAAACATTATGAAGAAAGA 57.351 30.769 1.94 0.00 42.32 2.52
216 238 8.450578 AATGCATGTTACTAGCTGCTTATTTA 57.549 30.769 7.79 0.00 35.66 1.40
254 276 0.107897 TCTGGGTGTGTGTGTGTGTC 60.108 55.000 0.00 0.00 0.00 3.67
269 305 0.185901 CTCTCTCTCTCCCCCTCTGG 59.814 65.000 0.00 0.00 0.00 3.86
272 308 1.421646 CTCTCTCTCTCTCTCCCCCTC 59.578 61.905 0.00 0.00 0.00 4.30
273 309 1.010793 TCTCTCTCTCTCTCTCCCCCT 59.989 57.143 0.00 0.00 0.00 4.79
274 310 1.421646 CTCTCTCTCTCTCTCTCCCCC 59.578 61.905 0.00 0.00 0.00 5.40
275 311 2.370189 CTCTCTCTCTCTCTCTCTCCCC 59.630 59.091 0.00 0.00 0.00 4.81
276 312 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
277 313 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
278 314 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
279 315 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
280 316 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
281 317 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
282 318 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
283 319 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
284 320 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
285 321 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
554 771 3.518003 GCAGTGGCAGGGCATTAG 58.482 61.111 5.51 0.00 40.72 1.73
633 1512 7.278875 ACTAATGAAGAGATTCACAAGGATCC 58.721 38.462 2.48 2.48 33.23 3.36
682 1561 5.661056 ATATGTTTGACGTTCTCCTCTGA 57.339 39.130 0.00 0.00 0.00 3.27
715 1594 7.658525 TCCTCAAATTAATGCACACCATTAT 57.341 32.000 0.00 0.00 43.83 1.28
766 1650 5.400703 GTTTCCTTTCGTCTAGATCGTTCT 58.599 41.667 12.36 0.97 35.90 3.01
851 1740 4.747605 GCTCGAAAAGATGAGAAGGATACC 59.252 45.833 0.00 0.00 34.04 2.73
886 1775 8.626526 AGCTAGCTAACTCTCTAGTTTGTAATC 58.373 37.037 17.69 0.00 43.60 1.75
931 1838 2.096220 CTCTCAGAGCTGCAATGTGT 57.904 50.000 1.02 0.00 0.00 3.72
1420 2336 2.550830 ACGAAAGTGGCAAGTGAGAT 57.449 45.000 0.00 0.00 46.97 2.75
1650 2566 1.762957 CCCATGGTGAGGACGAGTAAT 59.237 52.381 11.73 0.00 0.00 1.89
2109 3025 0.321210 CACCATAGACGGCACCACAA 60.321 55.000 0.00 0.00 0.00 3.33
2223 3139 1.980844 GAGTATTGCGACGACGTGAAA 59.019 47.619 4.58 0.00 41.98 2.69
2391 3307 0.459489 CCTTGCTCTTCTCCTCCTCG 59.541 60.000 0.00 0.00 0.00 4.63
2587 3503 3.782046 AGAGGAACGTGCATGTACATAC 58.218 45.455 12.96 3.18 0.00 2.39
2695 3613 6.206048 AGACCCTAAAAACATTCTACAAACCG 59.794 38.462 0.00 0.00 0.00 4.44
2698 3616 8.528044 ACAAGACCCTAAAAACATTCTACAAA 57.472 30.769 0.00 0.00 0.00 2.83
2710 3628 9.590451 CTCGTAACATATTACAAGACCCTAAAA 57.410 33.333 0.00 0.00 40.77 1.52
2790 3711 4.219033 GCAGAAGTACAAAACAACGATGG 58.781 43.478 0.00 0.00 0.00 3.51
2809 3730 3.291809 TGAAGCATCAAACATGTGCAG 57.708 42.857 0.00 0.00 41.19 4.41
2834 3755 1.608590 CAGTCGGTTTCCATTGTTGCT 59.391 47.619 0.00 0.00 0.00 3.91
2836 3757 1.335872 GGCAGTCGGTTTCCATTGTTG 60.336 52.381 0.00 0.00 0.00 3.33
2837 3758 0.958822 GGCAGTCGGTTTCCATTGTT 59.041 50.000 0.00 0.00 0.00 2.83
2860 3781 0.538977 TTTCCCGAGGTCGACTGACT 60.539 55.000 16.46 3.76 44.83 3.41
2863 3784 0.246635 ATGTTTCCCGAGGTCGACTG 59.753 55.000 16.46 5.79 43.02 3.51
2874 3795 1.747355 CCACAGAGCATGATGTTTCCC 59.253 52.381 0.00 0.00 0.00 3.97
2876 3797 2.163010 CCACCACAGAGCATGATGTTTC 59.837 50.000 0.00 0.00 0.00 2.78
2885 3806 4.994471 CAGCGCCACCACAGAGCA 62.994 66.667 2.29 0.00 0.00 4.26
2907 3828 5.978919 CAGAAGCTAGCTCTTAGTTCATCTG 59.021 44.000 19.65 18.63 0.00 2.90
3011 3937 4.537135 TCGAGCCAGTTCTCAGTAAAAT 57.463 40.909 0.00 0.00 33.41 1.82
3018 3944 1.474478 GTCTCATCGAGCCAGTTCTCA 59.526 52.381 0.00 0.00 33.41 3.27
3067 3994 1.533625 TGCATTCCTTTTCCGGACAG 58.466 50.000 1.83 2.66 31.44 3.51
3070 3997 3.963129 ACTAATGCATTCCTTTTCCGGA 58.037 40.909 16.86 0.00 0.00 5.14
3071 3998 4.157656 TCAACTAATGCATTCCTTTTCCGG 59.842 41.667 16.86 0.00 0.00 5.14
3072 3999 5.309323 TCAACTAATGCATTCCTTTTCCG 57.691 39.130 16.86 0.00 0.00 4.30
3076 4003 8.534496 AGCTTTATTCAACTAATGCATTCCTTT 58.466 29.630 16.86 4.76 35.38 3.11
3077 4004 8.071177 AGCTTTATTCAACTAATGCATTCCTT 57.929 30.769 16.86 5.44 35.38 3.36
3100 4027 2.391389 CCGCGGGAAACTTGAGAGC 61.391 63.158 20.10 0.00 0.00 4.09
3115 4042 9.528018 TCATCTTCCATTTATTTTAATTTCCGC 57.472 29.630 0.00 0.00 0.00 5.54
3149 4076 0.032130 TCTGAGGAAGTCACACGCAC 59.968 55.000 0.00 0.00 0.00 5.34
3156 4083 5.010933 CACTAGTACCTTCTGAGGAAGTCA 58.989 45.833 0.00 0.00 46.74 3.41
3157 4084 4.142337 GCACTAGTACCTTCTGAGGAAGTC 60.142 50.000 0.00 0.00 46.74 3.01
3166 4093 2.741145 CAGGGAGCACTAGTACCTTCT 58.259 52.381 0.00 0.00 0.00 2.85
3186 4113 5.295431 TGAACAGTTATGCTACAACATGC 57.705 39.130 0.00 0.00 0.00 4.06
3213 4140 0.887387 TACCGCACAAGGGCAAGTTC 60.887 55.000 0.00 0.00 35.02 3.01
3265 4193 9.271828 CAAATATGTAGTTGTATGCATGTCCTA 57.728 33.333 10.16 1.46 0.00 2.94
3305 4233 4.218417 ACATAACCAGAAGCTTGCGAAAAT 59.782 37.500 2.10 0.00 0.00 1.82
3364 4292 8.880244 ACCCTACTTCATGTATATTTCATGCTA 58.120 33.333 12.69 5.84 41.40 3.49
3372 4300 8.554490 AAGTCTGACCCTACTTCATGTATATT 57.446 34.615 3.76 0.00 30.08 1.28
3374 4302 7.973048 AAAGTCTGACCCTACTTCATGTATA 57.027 36.000 3.76 0.00 34.91 1.47
3382 4313 6.958192 TGATAACCTAAAGTCTGACCCTACTT 59.042 38.462 3.76 0.00 37.54 2.24
3385 4316 7.622081 TCATTGATAACCTAAAGTCTGACCCTA 59.378 37.037 3.76 0.00 0.00 3.53
3388 4319 7.987458 TCATCATTGATAACCTAAAGTCTGACC 59.013 37.037 3.76 0.00 0.00 4.02
3397 4328 4.929211 CGCCGATCATCATTGATAACCTAA 59.071 41.667 0.00 0.00 42.73 2.69
3406 4337 1.082300 GCTGCGCCGATCATCATTG 60.082 57.895 4.18 0.00 0.00 2.82
3407 4338 2.256591 GGCTGCGCCGATCATCATT 61.257 57.895 4.18 0.00 39.62 2.57
3418 4349 1.227999 TGCTTATATTCGGGCTGCGC 61.228 55.000 0.00 0.00 0.00 6.09
3456 4387 3.141398 ACACATGCAAGAACATCGAGTT 58.859 40.909 0.00 0.00 44.93 3.01
3465 4396 1.272369 TGGCCCATACACATGCAAGAA 60.272 47.619 0.00 0.00 0.00 2.52
3479 4410 1.565759 AGTCTTCAGCATTATGGCCCA 59.434 47.619 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.